0s autopkgtest [17:33:18]: starting date and time: 2025-10-29 17:33:18+0000 0s autopkgtest [17:33:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:33:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d8_7vr8d/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:netcdf4-python --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=netcdf4-python/1.7.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-10.secgroup --name adt-resolute-i386-python-ase-20251029-173318-juju-7f2275-prod-proposed-migration-environment-2-9910686d-72bb-4222-b699-4b892318f03b --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-python-ase-20251029-173318-juju-7f2275-prod-proposed-migration-environment-2-9910686d-72bb-4222-b699-4b892318f03b from image adt/ubuntu-resolute-amd64-server-20251029.img (UUID 2345c089-5627-4919-bdd0-dff8360b43c0)... 29s autopkgtest [17:33:47]: testbed dpkg architecture: amd64 29s autopkgtest [17:33:47]: testbed apt version: 3.1.11 30s autopkgtest [17:33:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [17:33:48]: testbed release detected to be: None 31s autopkgtest [17:33:49]: updating testbed package index (apt update) 31s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 31s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 31s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 31s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 31s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [205 kB] 31s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 31s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3643 kB] 31s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB] 31s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [185 kB] 31s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [287 kB] 31s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5760 B] 32s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.6 kB] 32s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [4212 B] 32s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 32s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [2559 kB] 32s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [1131 kB] 32s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [71.9 kB] 32s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [19.9 kB] 32s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [47.4 kB] 32s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [2072 B] 33s Fetched 8354 kB in 1s (7286 kB/s) 33s Reading package lists... 34s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 34s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 34s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 34s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 34s Reading package lists... 34s Reading package lists... 34s Building dependency tree... 34s Reading state information... 35s Calculating upgrade... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s autopkgtest [17:33:53]: upgrading testbed (apt dist-upgrade and autopurge) 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Calculating upgrade... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Solving dependencies... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s autopkgtest [17:33:56]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 38s autopkgtest [17:33:56]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 40s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (dsc) [2638 B] 40s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (tar) [2597 kB] 40s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (diff) [10.3 kB] 40s gpgv: Signature made Thu Mar 6 03:39:08 2025 UTC 40s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 40s gpgv: Can't check signature: No public key 40s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.24.0-1.dsc: no acceptable signature found 40s autopkgtest [17:33:58]: testing package python-ase version 3.24.0-1 40s autopkgtest [17:33:58]: build not needed 41s autopkgtest [17:33:59]: test command1: preparing testbed 41s Reading package lists... 42s Building dependency tree... 42s Reading state information... 42s Solving dependencies... 42s The following NEW packages will be installed: 42s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 42s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 42s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 42s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libjbig0 42s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 42s liblapack3 liblcms2-2 liblerc4 libnetcdf22 libopenjp2-7 libqhull-r8.0 42s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 42s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 42s python-matplotlib-data python3-all python3-ase python3-brotli python3-cftime 42s python3-contourpy python3-cycler python3-dateutil python3-decorator 42s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 42s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 42s python3-numpy python3-numpy-dev python3-packaging python3-pil 42s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pycodcif 42s python3-pytest python3-pytest-mock python3-scipy python3-spglib 42s python3-sympy python3-tk python3-ufolib2 python3-zopfli python3.13-tk 42s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 42s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 42s Need to get 84.1 MB of archives. 42s After this operation, 374 MB of additional disk space will be used. 42s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 42s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 42s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 42s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 42s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 43s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 43s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 43s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 43s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 43s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 43s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 43s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsymspg2 amd64 2.6.0-3build1 [209 kB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spglib amd64 2.6.0-3build1 [32.6 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 44s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 44s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-1 [171 kB] 44s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 44s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 44s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 44s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 44s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 44s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 44s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 44s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 44s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 45s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 45s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 45s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 45s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 45s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 45s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 45s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 45s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 45s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 45s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 45s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 45s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 45s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 45s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 45s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 45s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 45s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 45s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 45s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 45s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 45s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 45s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 45s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 45s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 45s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 45s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-1build2 [265 kB] 45s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 45s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 45s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 45s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 45s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 45s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 45s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 45s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 45s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 45s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 45s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.7-1 [884 B] 45s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 45s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 45s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 46s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 46s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.7-3build2 [63.0 kB] 46s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 46s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 46s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 47s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ase all 3.24.0-1 [1787 kB] 47s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 ase all 3.24.0-1 [31.1 kB] 47s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 47s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 47s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-3build1 [1411 kB] 47s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3build1 [59.8 kB] 47s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 47s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cftime amd64 1.6.4-2build1 [337 kB] 47s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 47s Get:81 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-netcdf4 amd64 1.7.3-1 [908 kB] 47s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 47s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycodcif amd64 3.11.0+dfsg-1build1 [78.2 kB] 47s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 47s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.14.0-3 [11.8 kB] 47s Fetched 84.1 MB in 6s (15.1 MB/s) 47s Selecting previously unselected package python3-numpy-dev:amd64. 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78531 files and directories currently installed.) 48s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 48s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 48s Selecting previously unselected package libblas3:amd64. 48s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 48s Unpacking libblas3:amd64 (3.12.1-6build1) ... 48s Selecting previously unselected package libgfortran5:amd64. 48s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 48s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 48s Selecting previously unselected package liblapack3:amd64. 48s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 48s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 48s Selecting previously unselected package python3-numpy. 48s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 48s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 48s Selecting previously unselected package fonts-font-awesome. 48s Preparing to unpack .../05-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 48s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 48s Selecting previously unselected package fonts-glyphicons-halflings. 48s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 48s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 48s Selecting previously unselected package libjs-bootstrap. 48s Preparing to unpack .../07-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 48s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 48s Selecting previously unselected package libjs-jquery. 48s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 48s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 48s Selecting previously unselected package libjs-jquery-ui. 48s Preparing to unpack .../09-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 48s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 48s Selecting previously unselected package python3-decorator. 48s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 48s Unpacking python3-decorator (5.2.1-2) ... 48s Selecting previously unselected package python3-scipy. 48s Preparing to unpack .../11-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 48s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 48s Selecting previously unselected package libsymspg2:amd64. 48s Preparing to unpack .../12-libsymspg2_2.6.0-3build1_amd64.deb ... 48s Unpacking libsymspg2:amd64 (2.6.0-3build1) ... 48s Selecting previously unselected package python3-spglib. 48s Preparing to unpack .../13-python3-spglib_2.6.0-3build1_amd64.deb ... 48s Unpacking python3-spglib (2.6.0-3build1) ... 48s Selecting previously unselected package fonts-dejavu-mono. 48s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 48s Unpacking fonts-dejavu-mono (2.37-8) ... 48s Selecting previously unselected package fonts-dejavu-core. 48s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 48s Unpacking fonts-dejavu-core (2.37-8) ... 48s Selecting previously unselected package fonts-lyx. 48s Preparing to unpack .../16-fonts-lyx_2.4.4-1_all.deb ... 48s Unpacking fonts-lyx (2.4.4-1) ... 48s Selecting previously unselected package python-matplotlib-data. 48s Preparing to unpack .../17-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 48s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 48s Selecting previously unselected package python3-dateutil. 48s Preparing to unpack .../18-python3-dateutil_2.9.0-4_all.deb ... 48s Unpacking python3-dateutil (2.9.0-4) ... 48s Selecting previously unselected package libgomp1:amd64. 48s Preparing to unpack .../19-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 48s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 48s Selecting previously unselected package libimagequant0:amd64. 48s Preparing to unpack .../20-libimagequant0_2.18.0-1build1_amd64.deb ... 48s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 48s Selecting previously unselected package libjpeg-turbo8:amd64. 48s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 48s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 48s Selecting previously unselected package libjpeg8:amd64. 48s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_amd64.deb ... 48s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 48s Selecting previously unselected package liblcms2-2:amd64. 48s Preparing to unpack .../23-liblcms2-2_2.16-2_amd64.deb ... 48s Unpacking liblcms2-2:amd64 (2.16-2) ... 48s Selecting previously unselected package libopenjp2-7:amd64. 48s Preparing to unpack .../24-libopenjp2-7_2.5.3-2.1_amd64.deb ... 48s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 48s Selecting previously unselected package libgraphite2-3:amd64. 48s Preparing to unpack .../25-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 48s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 48s Selecting previously unselected package libharfbuzz0b:amd64. 48s Preparing to unpack .../26-libharfbuzz0b_12.1.0-1_amd64.deb ... 48s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 48s Selecting previously unselected package libraqm0:amd64. 48s Preparing to unpack .../27-libraqm0_0.10.3-1_amd64.deb ... 48s Unpacking libraqm0:amd64 (0.10.3-1) ... 48s Selecting previously unselected package libdeflate0:amd64. 48s Preparing to unpack .../28-libdeflate0_1.23-2_amd64.deb ... 48s Unpacking libdeflate0:amd64 (1.23-2) ... 48s Selecting previously unselected package libjbig0:amd64. 48s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 48s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 48s Selecting previously unselected package liblerc4:amd64. 48s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 48s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 48s Selecting previously unselected package libsharpyuv0:amd64. 48s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_amd64.deb ... 48s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 48s Selecting previously unselected package libwebp7:amd64. 48s Preparing to unpack .../32-libwebp7_1.5.0-0.1_amd64.deb ... 48s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 48s Selecting previously unselected package libtiff6:amd64. 48s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 48s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 48s Selecting previously unselected package libwebpdemux2:amd64. 48s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_amd64.deb ... 48s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 49s Selecting previously unselected package libwebpmux3:amd64. 49s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_amd64.deb ... 49s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 49s Selecting previously unselected package python3-pil:amd64. 49s Preparing to unpack .../36-python3-pil_11.3.0-1ubuntu2_amd64.deb ... 49s Unpacking python3-pil:amd64 (11.3.0-1ubuntu2) ... 49s Selecting previously unselected package libtcl8.6:amd64. 49s Preparing to unpack .../37-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 49s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 49s Selecting previously unselected package fontconfig-config. 49s Preparing to unpack .../38-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 49s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 49s Selecting previously unselected package libfontconfig1:amd64. 49s Preparing to unpack .../39-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 49s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 49s Selecting previously unselected package libxrender1:amd64. 49s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_amd64.deb ... 49s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 49s Selecting previously unselected package libxft2:amd64. 49s Preparing to unpack .../41-libxft2_2.3.6-1build1_amd64.deb ... 49s Unpacking libxft2:amd64 (2.3.6-1build1) ... 49s Selecting previously unselected package x11-common. 49s Preparing to unpack .../42-x11-common_1%3a7.7+24ubuntu1_all.deb ... 49s Unpacking x11-common (1:7.7+24ubuntu1) ... 49s Selecting previously unselected package libxss1:amd64. 49s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_amd64.deb ... 49s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 49s Selecting previously unselected package libtk8.6:amd64. 49s Preparing to unpack .../44-libtk8.6_8.6.17-1_amd64.deb ... 49s Unpacking libtk8.6:amd64 (8.6.17-1) ... 49s Selecting previously unselected package python3.14-tk. 49s Preparing to unpack .../45-python3.14-tk_3.14.0-4_amd64.deb ... 49s Unpacking python3.14-tk (3.14.0-4) ... 49s Selecting previously unselected package python3.13-tk. 49s Preparing to unpack .../46-python3.13-tk_3.13.9-1_amd64.deb ... 49s Unpacking python3.13-tk (3.13.9-1) ... 49s Selecting previously unselected package tk8.6-blt2.5. 49s Preparing to unpack .../47-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 49s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 49s Selecting previously unselected package blt. 49s Preparing to unpack .../48-blt_2.5.3+dfsg-8_amd64.deb ... 49s Unpacking blt (2.5.3+dfsg-8) ... 49s Selecting previously unselected package python3-tk:amd64. 49s Preparing to unpack .../49-python3-tk_3.13.9-1_amd64.deb ... 49s Unpacking python3-tk:amd64 (3.13.9-1) ... 49s Selecting previously unselected package python3-pil.imagetk:amd64. 49s Preparing to unpack .../50-python3-pil.imagetk_11.3.0-1ubuntu2_amd64.deb ... 49s Unpacking python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 49s Selecting previously unselected package python3-contourpy. 49s Preparing to unpack .../51-python3-contourpy_1.3.1-1build2_amd64.deb ... 49s Unpacking python3-contourpy (1.3.1-1build2) ... 49s Selecting previously unselected package python3-cycler. 49s Preparing to unpack .../52-python3-cycler_0.12.1-2_all.deb ... 49s Unpacking python3-cycler (0.12.1-2) ... 49s Selecting previously unselected package python3-brotli. 49s Preparing to unpack .../53-python3-brotli_1.1.0-2build6_amd64.deb ... 49s Unpacking python3-brotli (1.1.0-2build6) ... 49s Selecting previously unselected package python3-platformdirs. 49s Preparing to unpack .../54-python3-platformdirs_4.3.7-1_all.deb ... 49s Unpacking python3-platformdirs (4.3.7-1) ... 49s Selecting previously unselected package python3-fs. 49s Preparing to unpack .../55-python3-fs_2.4.16-7_all.deb ... 49s Unpacking python3-fs (2.4.16-7) ... 49s Selecting previously unselected package libxslt1.1:amd64. 49s Preparing to unpack .../56-libxslt1.1_1.1.43-0.3_amd64.deb ... 49s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 49s Selecting previously unselected package python3-lxml:amd64. 49s Preparing to unpack .../57-python3-lxml_6.0.1-1build1_amd64.deb ... 49s Unpacking python3-lxml:amd64 (6.0.1-1build1) ... 49s Selecting previously unselected package python3-lz4. 49s Preparing to unpack .../58-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 49s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 49s Selecting previously unselected package python3-mpmath. 49s Preparing to unpack .../59-python3-mpmath_1.3.0-1_all.deb ... 49s Unpacking python3-mpmath (1.3.0-1) ... 49s Selecting previously unselected package python3-sympy. 49s Preparing to unpack .../60-python3-sympy_1.13.3-5_all.deb ... 49s Unpacking python3-sympy (1.13.3-5) ... 49s Selecting previously unselected package python3-ufolib2. 49s Preparing to unpack .../61-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 49s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 49s Selecting previously unselected package python3-all. 49s Preparing to unpack .../62-python3-all_3.13.7-1_amd64.deb ... 49s Unpacking python3-all (3.13.7-1) ... 49s Selecting previously unselected package libzopfli1. 49s Preparing to unpack .../63-libzopfli1_1.0.3-3_amd64.deb ... 49s Unpacking libzopfli1 (1.0.3-3) ... 49s Selecting previously unselected package python3-zopfli. 49s Preparing to unpack .../64-python3-zopfli_0.2.3.post1-1_amd64.deb ... 49s Unpacking python3-zopfli (0.2.3.post1-1) ... 49s Selecting previously unselected package unicode-data. 49s Preparing to unpack .../65-unicode-data_16.0.0-1_all.deb ... 49s Unpacking unicode-data (16.0.0-1) ... 49s Selecting previously unselected package python3-fonttools. 49s Preparing to unpack .../66-python3-fonttools_4.57.0-2build1_amd64.deb ... 49s Unpacking python3-fonttools (4.57.0-2build1) ... 49s Selecting previously unselected package python3-kiwisolver. 49s Preparing to unpack .../67-python3-kiwisolver_1.4.7-3build2_amd64.deb ... 49s Unpacking python3-kiwisolver (1.4.7-3build2) ... 49s Selecting previously unselected package python3-packaging. 49s Preparing to unpack .../68-python3-packaging_25.0-1_all.deb ... 49s Unpacking python3-packaging (25.0-1) ... 49s Selecting previously unselected package libqhull-r8.0:amd64. 49s Preparing to unpack .../69-libqhull-r8.0_2020.2-6build1_amd64.deb ... 49s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 49s Selecting previously unselected package python3-matplotlib. 49s Preparing to unpack .../70-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 49s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 49s Selecting previously unselected package python3-ase. 49s Preparing to unpack .../71-python3-ase_3.24.0-1_all.deb ... 49s Unpacking python3-ase (3.24.0-1) ... 50s Selecting previously unselected package ase. 50s Preparing to unpack .../72-ase_3.24.0-1_all.deb ... 50s Unpacking ase (3.24.0-1) ... 50s Selecting previously unselected package libaec0:amd64. 50s Preparing to unpack .../73-libaec0_1.1.3-1_amd64.deb ... 50s Unpacking libaec0:amd64 (1.1.3-1) ... 50s Selecting previously unselected package libsz2:amd64. 50s Preparing to unpack .../74-libsz2_1.1.3-1_amd64.deb ... 50s Unpacking libsz2:amd64 (1.1.3-1) ... 50s Selecting previously unselected package libhdf5-310:amd64. 50s Preparing to unpack .../75-libhdf5-310_1.14.5+repack-3build1_amd64.deb ... 50s Unpacking libhdf5-310:amd64 (1.14.5+repack-3build1) ... 50s Selecting previously unselected package libhdf5-hl-310:amd64. 50s Preparing to unpack .../76-libhdf5-hl-310_1.14.5+repack-3build1_amd64.deb ... 50s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 50s Selecting previously unselected package libnetcdf22:amd64. 50s Preparing to unpack .../77-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 50s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 50s Selecting previously unselected package python3-cftime. 50s Preparing to unpack .../78-python3-cftime_1.6.4-2build1_amd64.deb ... 50s Unpacking python3-cftime (1.6.4-2build1) ... 50s Selecting previously unselected package python3-iniconfig. 50s Preparing to unpack .../79-python3-iniconfig_1.1.1-2_all.deb ... 50s Unpacking python3-iniconfig (1.1.1-2) ... 50s Selecting previously unselected package python3-netcdf4. 50s Preparing to unpack .../80-python3-netcdf4_1.7.3-1_amd64.deb ... 50s Unpacking python3-netcdf4 (1.7.3-1) ... 50s Selecting previously unselected package python3-pluggy. 50s Preparing to unpack .../81-python3-pluggy_1.6.0-1_all.deb ... 50s Unpacking python3-pluggy (1.6.0-1) ... 50s Selecting previously unselected package python3-pycodcif. 50s Preparing to unpack .../82-python3-pycodcif_3.11.0+dfsg-1build1_amd64.deb ... 50s Unpacking python3-pycodcif (3.11.0+dfsg-1build1) ... 50s Selecting previously unselected package python3-pytest. 50s Preparing to unpack .../83-python3-pytest_8.3.5-2_all.deb ... 50s Unpacking python3-pytest (8.3.5-2) ... 50s Selecting previously unselected package python3-pytest-mock. 50s Preparing to unpack .../84-python3-pytest-mock_3.14.0-3_all.deb ... 50s Unpacking python3-pytest-mock (3.14.0-3) ... 50s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 50s Setting up liblcms2-2:amd64 (2.16-2) ... 50s Setting up python3-iniconfig (1.1.1-2) ... 50s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 50s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 50s Setting up libxrender1:amd64 (1:0.9.12-1) ... 50s Setting up python3-lz4 (4.4.4+dfsg-3) ... 50s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 50s Setting up fonts-lyx (2.4.4-1) ... 50s Setting up x11-common (1:7.7+24ubuntu1) ... 50s Setting up libdeflate0:amd64 (1.23-2) ... 50s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 50s Setting up python3-all (3.13.7-1) ... 50s Setting up python3-pycodcif (3.11.0+dfsg-1build1) ... 50s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 50s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 50s Setting up libaec0:amd64 (1.1.3-1) ... 50s Setting up python3-platformdirs (4.3.7-1) ... 50s Setting up python3-fs (2.4.16-7) ... 50s Setting up unicode-data (16.0.0-1) ... 50s Setting up libsymspg2:amd64 (2.6.0-3build1) ... 50s Setting up python3-decorator (5.2.1-2) ... 50s Setting up libblas3:amd64 (3.12.1-6build1) ... 50s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 50s Setting up python3-packaging (25.0-1) ... 50s Setting up libzopfli1 (1.0.3-3) ... 50s Setting up python3-brotli (1.1.0-2build6) ... 50s Setting up python3-cycler (0.12.1-2) ... 51s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 51s Setting up fonts-dejavu-mono (2.37-8) ... 51s Setting up python3-kiwisolver (1.4.7-3build2) ... 51s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 51s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 51s Setting up fonts-dejavu-core (2.37-8) ... 51s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 51s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 51s Setting up python3-pluggy (1.6.0-1) ... 51s Setting up libwebp7:amd64 (1.5.0-0.1) ... 51s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 51s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 51s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 51s Setting up python3-dateutil (2.9.0-4) ... 51s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 51s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 51s Setting up python3-mpmath (1.3.0-1) ... 51s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 51s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 51s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 51s Setting up libsz2:amd64 (1.1.3-1) ... 51s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 51s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 51s Setting up python3-sympy (1.13.3-5) ... 54s Setting up liblapack3:amd64 (3.12.1-6build1) ... 54s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 54s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 54s Setting up python3-pytest (8.3.5-2) ... 55s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 55s Setting up python3-zopfli (0.2.3.post1-1) ... 55s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 55s Setting up libraqm0:amd64 (0.10.3-1) ... 55s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 56s Setting up libhdf5-310:amd64 (1.14.5+repack-3build1) ... 56s Setting up python3-pytest-mock (3.14.0-3) ... 56s Setting up python3-lxml:amd64 (6.0.1-1build1) ... 56s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 56s Setting up python3-contourpy (1.3.1-1build2) ... 56s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 56s Setting up python3-spglib (2.6.0-3build1) ... 56s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3build1) ... 56s Setting up libxft2:amd64 (2.3.6-1build1) ... 56s Setting up python3-scipy (1.15.3-1ubuntu1) ... 58s Setting up libtk8.6:amd64 (8.6.17-1) ... 58s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 58s Setting up python3.13-tk (3.13.9-1) ... 58s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 58s Setting up python3-cftime (1.6.4-2build1) ... 58s Setting up python3-netcdf4 (1.7.3-1) ... 58s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 58s Setting up python3.14-tk (3.14.0-4) ... 58s Setting up blt (2.5.3+dfsg-8) ... 58s Setting up python3-tk:amd64 (3.13.9-1) ... 58s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 58s Setting up python3-fonttools (4.57.0-2build1) ... 59s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 59s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 60s Setting up python3-ase (3.24.0-1) ... 61s Setting up ase (3.24.0-1) ... 61s Processing triggers for libc-bin (2.42-0ubuntu3) ... 61s Processing triggers for man-db (2.13.1-1) ... 62s autopkgtest [17:34:20]: test environment configured for cross building 62s autopkgtest [17:34:20]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 62s autopkgtest [17:34:20]: test command1: [----------------------- 63s About to run pytest with these parameters: 63s -p 63s no:cacheprovider 66s ============================= test session starts ============================== 66s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 66s 66s Libraries 66s ========= 66s 66s ase-3.24.0 /usr/lib/python3/dist-packages/ase 66s numpy-2.2.4 /usr/lib/python3/dist-packages/numpy 66s scipy-1.15.3 /usr/lib/python3/dist-packages/scipy 66s matplotlib-3.10.7+dfsg1 /usr/lib/python3/dist-packages/matplotlib 66s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 66s ase_ext not installed 66s flask not installed 66s psycopg2 not installed 66s pyamg not installed 66s 66s 66s Calculators 66s =========== 66s Config: No configuration file specified 66s Datafiles: ase-datafiles package not installed 66s 66s [ ] abinit not installed: 'abinit' 66s [ ] ace cfg= 66s [ ] aims not installed: 'aims' 66s [ ] amber cfg= 66s [ ] asap not installed: asap3 66s [ ] castep not installed: 'castep' 66s [ ] cp2k not installed: 'cp2k' 66s [ ] crystal cfg= 66s [ ] demon cfg= 66s [ ] demonnano cfg= 66s [ ] dftb not installed: No 'dftb' section 66s [ ] dftd3 not installed: 'dftd3' 66s [ ] dmol cfg= 66s [ ] elk not installed: No 'elk' section 66s [ ] espresso not installed: 'espresso' 66s [ ] exciting not installed: 'exciting' 66s [ ] gamess_us cfg= 66s [ ] gaussian cfg= 66s [ ] gpaw not installed: gpaw 66s [ ] gromacs not installed: 'gromacs' 66s [ ] gulp cfg= 66s [ ] hotbit cfg= 66s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 66s [ ] lammpsrun not installed: 'lammps' 66s [ ] mopac not installed: No 'mopac' section 66s [ ] nwchem not installed: No 'nwchem' section 66s [ ] octopus not installed: 'octopus' 66s [ ] onetep cfg= 66s [ ] openmx not installed: 'openmx' 66s [ ] orca not installed: 'orca' 66s [ ] plumed not installed: 66s [ ] psi4 not installed: psi4 66s [ ] qchem cfg= 66s [ ] siesta not installed: No 'siesta' section 66s [ ] turbomole cfg= 66s [ ] vasp not installed: 'vasp' 66s 66s * Use --calculators option to select calculators. 66s 66s * See "ase test --help-calculators" on how to configure calculators. 66s 66s * This listing only includes external calculators known by the test 66s system. Others are "configured" by setting an environment variable 66s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 66s the documentation of that individual calculator. 66s 66s 66s rootdir: /usr/lib/python3/dist-packages/ase/test 66s configfile: pytest.ini 66s plugins: mock-3.14.0, typeguard-4.4.2 66s collected 3522 items 66s 66s atoms/test_atom.py .. [ 0%] 66s atoms/test_atom_scaled_pos.py ... [ 0%] 66s atoms/test_atoms.py .............. [ 0%] 66s atoms/test_atoms_angle.py . [ 0%] 66s atoms/test_atoms_distance.py .. [ 0%] 66s atoms/test_atoms_formula.py . [ 0%] 66s atoms/test_atoms_get_duplicates.py . [ 0%] 66s atoms/test_atoms_get_positions.py ... [ 0%] 66s atoms/test_atoms_getitem.py ............. [ 1%] 66s atoms/test_atoms_indices.py . [ 1%] 66s atoms/test_atoms_info_copy.py . [ 1%] 66s atoms/test_atoms_instantiation.py .... [ 1%] 66s atoms/test_build.py . [ 1%] 66s atoms/test_center.py ........... [ 1%] 66s atoms/test_center_nonperiodic.py . [ 1%] 66s atoms/test_compare_atoms.py . [ 1%] 66s atoms/test_deprecated_get_set.py ... [ 1%] 66s atoms/test_get_angles.py . [ 1%] 66s atoms/test_h2.py . [ 1%] 66s atoms/test_mic.py . [ 1%] 66s atoms/test_momenta_velocities.py ... [ 1%] 66s atoms/test_permute_axes.py . [ 1%] 66s atoms/test_rotate.py . [ 2%] 66s atoms/test_rotate_euler.py . [ 2%] 66s atoms/test_scaled_positions.py . [ 2%] 66s atoms/test_set_get_angle.py . [ 2%] 66s bandstructure/test_bandpath.py ....... [ 2%] 66s bandstructure/test_bandstructure.py ... [ 2%] 66s bandstructure/test_bandstructure_json.py . [ 2%] 68s bandstructure/test_bandstructure_many.py ....................... [ 3%] 68s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 68s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 68s bravais/test_2d_cell_pbc.py ..... [ 3%] 68s bravais/test_bravais_type_engine.py ................. [ 3%] 68s bravais/test_eps.py .. [ 3%] 68s bravais/test_hex.py . [ 3%] 68s bravais/test_lattices.py ............................................... [ 5%] 68s .. [ 5%] 68s bravais/test_line_lattice.py . [ 5%] 69s bravais/test_main.py ......................... [ 6%] 69s bravais/test_orcc_mcl.py . [ 6%] 69s bravais/test_reduce.py . [ 6%] 69s bravais/test_standard_form.py ....................... [ 6%] 69s build_/test_attach.py .... [ 6%] 69s build_/test_build_bulk.py .............................................. [ 8%] 69s ........................................................................ [ 10%] 69s ........................................................................ [ 12%] 69s .................................................. [ 13%] 69s build_/test_bulk.py .......... [ 13%] 69s build_/test_connected.py .... [ 14%] 69s build_/test_minimize_rotation_and_translation.py .. [ 14%] 70s build_/test_supercells.py .............................................. [ 15%] 71s .............. [ 15%] 71s build_/test_surface.py ... [ 15%] 71s build_/test_surface_stack.py . [ 15%] 71s build_/test_surface_terminations.py . [ 16%] 71s calculator/abinit/test_abinit_cmdline.py s [ 16%] 71s calculator/abinit/test_main.py sssssssss [ 16%] 71s calculator/ace/test_ace.py s [ 16%] 71s calculator/ace/test_ace_calculator.py . [ 16%] 71s calculator/aims/test_H2O_aims.py s [ 16%] 71s calculator/aims/test_aims_interface.py s [ 16%] 71s calculator/aims/test_version.py . [ 16%] 71s calculator/amber/test_amber.py s [ 16%] 71s calculator/castep/test_castep_interface.py ........ [ 16%] 71s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 71s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 71s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 71s calculator/cp2k/test_cp2k_restart.py . [ 17%] 71s calculator/cp2k/test_cp2k_stress.py s [ 17%] 71s calculator/crystal/test_bulk.py s [ 17%] 71s calculator/crystal/test_graphene.py s [ 17%] 71s calculator/crystal/test_molecule.py s [ 17%] 71s calculator/demon/test_h2o.py s [ 17%] 71s calculator/demon/test_h2o_xas_xes.py s [ 17%] 71s calculator/demonnano/test_h2o.py s [ 17%] 71s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 71s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 71s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 71s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 71s calculator/dftb/test_dipole.py s [ 17%] 71s calculator/dftb/test_xtb_static.py s [ 17%] 71s calculator/dmol/test_Al_dmol.py s [ 17%] 71s calculator/dmol/test_water_dmol.py s [ 17%] 71s calculator/elk/test_elk.py ss [ 17%] 71s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 71s calculator/exciting/test_exciting.py sssss [ 18%] 71s calculator/exciting/test_runner.py ssss. [ 18%] 71s calculator/gamess_us/test_basis_ecp.py s [ 18%] 71s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 71s calculator/gaussian/test_h2of.py s [ 18%] 71s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 71s calculator/gaussian/test_water.py s [ 18%] 71s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 71s calculator/gpaw_/test_read_text_output.py . [ 18%] 72s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 72s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....sss [ 21%] 72s calculator/gromacs/test_gromacs.py .ss [ 21%] 72s calculator/kim/test_cutoff_skin.py s [ 21%] 72s calculator/kim/test_energy_forces_stress.py s [ 21%] 72s calculator/kim/test_modify_parameters.py s [ 21%] 72s calculator/kim/test_multi_neighlist.py s [ 21%] 72s calculator/kim/test_relax.py s [ 21%] 72s calculator/kim/test_single_atom.py s [ 21%] 72s calculator/kim/test_update_coords.py s [ 21%] 72s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 72s calculator/lammps/test_prism.py ........................................ [ 22%] 72s . [ 22%] 72s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 72s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 72s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 72s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 72s calculator/lammpslib/test_lammpslib_simple.py sssss [ 23%] 72s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 23%] 72s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 72s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 72s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 72s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 72s calculator/lammpsrun/test_lammps_units.py s [ 23%] 72s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 72s calculator/nwchem/test_nwchem_bands.py s [ 23%] 72s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 72s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 72s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 72s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 72s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 72s calculator/nwchem/test_nwchem_parser.py . [ 23%] 72s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 24%] 72s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 24%] 72s calculator/nwchem/test_nwchem_stress.py s [ 24%] 72s calculator/nwchem/test_nwchem_version.py s [ 24%] 72s calculator/octopus/test_big.py ss [ 24%] 72s calculator/onetep/test_onetep.py s [ 24%] 72s calculator/openmx/test_md.py s [ 24%] 72s calculator/openmx/test_version.py . [ 24%] 72s calculator/plumed/test_plumed.py ssssss [ 24%] 72s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 72s calculator/qchem/test_qchem_calculator.py s [ 24%] 72s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 72s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 72s calculator/siesta/test_bandstructure.py s [ 24%] 72s calculator/siesta/test_dos.py s [ 24%] 72s calculator/siesta/test_fdf_io.py s [ 24%] 72s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 72s calculator/siesta/test_siesta_version.py . [ 24%] 72s calculator/siesta/test_siesta_zmat.py sss [ 24%] 72s calculator/siesta/test_write_input.py sssss [ 24%] 72s calculator/socketio/test_h2_stiffness.py sssss [ 25%] 72s calculator/socketio/test_integration.py ss [ 25%] 72s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 25%] 72s calculator/socketio/test_python_interface.py . [ 25%] 72s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 72s calculator/test_al.py s [ 25%] 72s calculator/test_bond_polarizability.py ... [ 25%] 72s calculator/test_calculator.py .. [ 25%] 72s calculator/test_ch4_energy.py sssssssssss [ 25%] 72s calculator/test_command.py ............................................. [ 27%] 72s .................. [ 27%] 72s calculator/test_dftd3.py sssssssssssssss [ 27%] 73s calculator/test_eam.py . [ 27%] 73s calculator/test_eam_run.py sssssssss [ 28%] 73s calculator/test_fd.py . [ 28%] 73s calculator/test_gulp.py s [ 28%] 73s calculator/test_gulp_opt.py s [ 28%] 73s calculator/test_h2.py sss [ 28%] 73s calculator/test_h2_bond_force.py sssssss [ 28%] 73s calculator/test_h2morse.py ..... [ 28%] 73s calculator/test_harmonic.py ...... [ 28%] 73s calculator/test_lj.py ....... [ 29%] 73s calculator/test_mopac.py ss [ 29%] 73s calculator/test_mopac_version.py ... [ 29%] 73s calculator/test_morse.py .... [ 29%] 73s calculator/test_orca.py .sssssss [ 29%] 73s calculator/test_orca_qmmm.py s [ 29%] 73s calculator/test_polarizability.py . [ 29%] 73s calculator/test_si_stress.py sssss [ 29%] 74s calculator/test_subprocess_calculator.py ..s. [ 29%] 74s calculator/test_traj.py sssss.sss [ 30%] 74s calculator/test_ts09.py .. [ 30%] 74s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 74s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 74s calculator/turbomole/test_turbomole_au13.py s [ 30%] 74s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 74s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 74s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 74s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 74s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 74s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 74s calculator/turbomole/test_turbomole_reader.py . [ 31%] 74s calculator/turbomole/test_turbomole_statpt.py s [ 31%] 74s calculator/vasp/test_chgcar.py . [ 31%] 74s calculator/vasp/test_vasp_Al_volrelax.py s [ 31%] 74s calculator/vasp/test_vasp_calculator.py ..................... [ 31%] 74s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 74s calculator/vasp/test_vasp_check_state.py s [ 31%] 74s calculator/vasp/test_vasp_co.py s [ 31%] 74s calculator/vasp/test_vasp_converge.py . [ 31%] 74s calculator/vasp/test_vasp_errors.py . [ 31%] 74s calculator/vasp/test_vasp_freq.py s [ 31%] 74s calculator/vasp/test_vasp_get_dos.py s [ 32%] 74s calculator/vasp/test_vasp_incar.py .......... [ 32%] 74s calculator/vasp/test_vasp_input.py ...................... [ 32%] 74s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 74s calculator/vasp/test_vasp_potcar.py ss [ 33%] 74s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 74s calculator/vasp/test_vasp_wdir.py s [ 33%] 74s calculator/vasp/test_vasp_xml.py s [ 33%] 74s calculator/vasp/test_version.py . [ 33%] 74s cell/test_cell.py ........... [ 33%] 74s cell/test_cell_completion.py . [ 33%] 74s cell/test_cell_conv.py . [ 33%] 74s cell/test_cell_uncompletion.py .. [ 33%] 75s cell/test_conventional_map.py ....................... [ 34%] 75s cell/test_minkowski_reduce.py ....................... [ 35%] 75s cell/test_niggli.py .................... [ 35%] 75s cell/test_niggli_ndim.py ............................ [ 36%] 75s cell/test_niggli_op.py . [ 36%] 75s cell/test_standard_form.py . [ 36%] 75s cell/test_supercell.py .... [ 36%] 75s cli/test_ag.py . [ 36%] 76s cli/test_bandstructure.py . [ 36%] 77s cli/test_bzplot.py ... [ 36%] 77s cli/test_complete.py . [ 36%] 77s cli/test_convert.py . [ 36%] 79s cli/test_diff.py ......... [ 37%] 80s cli/test_dimensionality.py .... [ 37%] 81s cli/test_exec.py ..... [ 37%] 82s cli/test_imports.py . [ 37%] 83s cli/test_info.py ..... [ 37%] 83s cli/test_run.py . [ 37%] 83s constraints/test_CO2linear_Au111.py .. [ 37%] 83s constraints/test_external_force.py . [ 37%] 84s constraints/test_fix_bond_length_mic.py .. [ 37%] 86s constraints/test_fix_symmetry.py ........... [ 38%] 86s constraints/test_fixatoms.py . [ 38%] 87s constraints/test_fixbondlength_CO2_Au111.py .. [ 38%] 87s constraints/test_fixbonds.py . [ 38%] 87s constraints/test_fixcartesian.py .. [ 38%] 88s constraints/test_fixcom.py ... [ 38%] 88s constraints/test_fixedline_fixedplane.py ............................... [ 39%] 88s ............. [ 39%] 88s constraints/test_fixedmode.py . [ 39%] 88s constraints/test_fixinternals.py ....... [ 39%] 89s constraints/test_fixscaled.py .. [ 39%] 89s constraints/test_fixsubsetcom.py ... [ 40%] 89s constraints/test_getindices.py . [ 40%] 89s constraints/test_hookean.py . [ 40%] 89s constraints/test_hookean_pbc.py . [ 40%] 89s constraints/test_mirror.py . [ 40%] 89s constraints/test_negativeindex.py . [ 40%] 89s constraints/test_parameteric_constr.py . [ 40%] 89s constraints/test_repeat_FixAtoms.py . [ 40%] 89s constraints/test_setpos.py . [ 40%] 91s db/test_cli.py ...... [ 40%] 96s db/test_db.py ..sss [ 40%] 96s db/test_db2.py ..xxx. [ 40%] 96s db/test_db_web.py ssss. [ 40%] 96s db/test_jsondb.py . [ 40%] 96s db/test_metadata.py .. [ 40%] 96s db/test_mysql.py ssssss [ 41%] 96s db/test_o2b2o.py . [ 41%] 96s db/test_row.py . [ 41%] 97s db/test_sql_db_ext_tables.py .xxx.xxx.xxx.xxx.xxx.xxx [ 41%] 97s db/test_sqlite.py .... [ 41%] 97s db/test_table.py . [ 42%] 97s db/test_update.py .. [ 42%] 97s dft/test_bandgap.py . [ 42%] 97s dft/test_bee.py ... [ 42%] 97s dft/test_bz.py . [ 42%] 97s dft/test_dos.py . [ 42%] 97s dft/test_hex.py . [ 42%] 97s dft/test_interpolate.py . [ 42%] 97s dft/test_kpt_density_monkhorst_pack.py . [ 42%] 97s dft/test_kpts_size_offsets.py ........ [ 42%] 98s dft/test_min_distance_monkhorst_pack.py ... [ 42%] 98s dft/test_monoclinic.py . [ 42%] 98s emt/test_emt.py . [ 42%] 98s emt/test_emt1.py . [ 42%] 98s emt/test_emt2.py . [ 42%] 98s emt/test_emt_h3o2m.py . [ 42%] 99s emt/test_emt_stress.py . [ 42%] 99s filter/test_cellfilter.py sssssssssssssssssss [ 43%] 99s filter/test_filter.py . [ 43%] 99s filter/test_strain.py ss [ 43%] 99s filter/test_strain_emt.py . [ 43%] 99s fio/aims/test_aims_out.py ......... [ 43%] 99s fio/aims/test_aims_out_chunks.py ....................................... [ 44%] 99s ............................................................... [ 46%] 99s fio/aims/test_geometry.py ........... [ 46%] 99s fio/aims/test_write_control.py ...x.......x [ 47%] 99s fio/castep/test_castep_reader.py ............... [ 47%] 99s fio/castep/test_read_bands.py . [ 47%] 99s fio/exciting/test_exciting.py ssssss [ 47%] 99s fio/octopus/test_input.py .... [ 48%] 99s fio/octopus/test_output.py ...... [ 48%] 99s fio/test_abinit.py ..... [ 48%] 99s fio/test_ace.py .. [ 48%] 99s fio/test_amber.py ... [ 48%] 99s fio/test_animate.py . [ 48%] 99s fio/test_atoms_bytes.py . [ 48%] 99s fio/test_bundletrajectory.py ...... [ 48%] 99s fio/test_castep.py ........... [ 49%] 99s fio/test_cfg.py . [ 49%] 99s fio/test_cif.py ..................... [ 49%] 99s fio/test_cifblock.py ........ [ 49%] 99s fio/test_cjson.py .. [ 49%] 99s fio/test_compression.py ...................... [ 50%] 99s fio/test_cube.py .... [ 50%] 99s fio/test_dftb.py ..... [ 50%] 99s fio/test_dlp.py ... [ 50%] 99s fio/test_dmol.py . [ 50%] 99s fio/test_elk.py ... [ 50%] 99s fio/test_eon_multi_image_read.py . [ 51%] 99s fio/test_eon_readwrite.py ...... [ 51%] 99s fio/test_espresso.py ................. [ 51%] 99s fio/test_espresso_ph.py ..... [ 51%] 99s fio/test_external_io_formats.py .... [ 51%] 100s fio/test_extxyz.py ................................. [ 52%] 100s fio/test_fileobj.py . [ 52%] 100s fio/test_formats.py ... [ 52%] 100s fio/test_gaussian.py .......... [ 53%] 100s fio/test_gaussian_gjf_input.py ........... [ 53%] 100s fio/test_gaussian_out.py .......... [ 53%] 100s fio/test_gen.py ......................... [ 54%] 100s fio/test_gpaw.py . [ 54%] 100s fio/test_gpumd.py .......... [ 54%] 100s fio/test_info.py . [ 54%] 100s fio/test_ioformats.py .sssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 100s sssssssssssssssssssssssssssssssssssssssssssssssss [ 57%] 100s fio/test_iread_path.py . [ 57%] 100s fio/test_json_arrays.py . [ 57%] 100s fio/test_jsonio.py .. [ 57%] 100s fio/test_jsonio_atoms.py ... [ 57%] 100s fio/test_lammpsdump.py .................. [ 58%] 100s fio/test_magmom.py . [ 58%] 100s fio/test_magres.py .. [ 58%] 100s fio/test_match_magic.py . [ 58%] 100s fio/test_mustem.py .. [ 58%] 100s fio/test_netcdftrajectory.py .... [ 58%] 100s fio/test_nomad.py . [ 58%] 100s fio/test_nwchem.py ..... [ 58%] 100s fio/test_oi.py ......................................................... [ 60%] 100s ......................... [ 61%] 100s fio/test_oldtraj.py . [ 61%] 101s fio/test_onetep.py .... [ 61%] 101s fio/test_openmx.py .. [ 61%] 101s fio/test_opls.py . [ 61%] 101s fio/test_orca.py ..... [ 61%] 101s fio/test_parallel.py . [ 61%] 101s fio/test_pdb_cell_io.py .... [ 61%] 101s fio/test_pdb_extra.py .. [ 61%] 101s fio/test_pickle_bundle_trajectory.py ..x.x.. [ 61%] 101s fio/test_povray.py ss.ss [ 62%] 101s fio/test_prismatic.py .. [ 62%] 101s fio/test_proteindatabank.py .......... [ 62%] 101s fio/test_py.py . [ 62%] 101s fio/test_pycodcif_read.py . [ 62%] 101s fio/test_qbox.py .. [ 62%] 101s fio/test_readwrite_errors.py ........ [ 62%] 101s fio/test_res.py . [ 62%] 101s fio/test_rmc6f.py ............ [ 63%] 101s fio/test_sdf.py .. [ 63%] 101s fio/test_siesta.py ... [ 63%] 101s fio/test_traj_bytesio.py . [ 63%] 101s fio/test_trajectory.py .... [ 63%] 101s fio/test_trajectory_heterogeneous.py . [ 63%] 101s fio/test_turbomole.py . [ 63%] 101s fio/test_ulm.py .... [ 63%] 101s fio/test_ulm_dummy.py . [ 63%] 101s fio/test_v_sim.py . [ 63%] 101s fio/test_vasp_structure.py ........ [ 63%] 101s fio/test_wout.py .. [ 63%] 101s fio/test_xsd_bond.py . [ 63%] 101s fio/test_xsf_spec.py . [ 64%] 101s fio/test_xyz.py ...... [ 64%] 101s fio/vasp/test_incar_writer.py ............. [ 64%] 101s fio/vasp/test_poscar.py . [ 64%] 101s fio/vasp/test_read_vasp_xml.py ....... [ 64%] 102s fio/vasp/test_vasp_out.py ....... [ 64%] 102s fio/vasp/test_vasp_outcar_parsers.py ............................ [ 65%] 102s fio/vasp/test_vasp_poscar.py ............ [ 66%] 102s forcefields/test_acn.py . [ 66%] 102s forcefields/test_aic.py . 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[ 98%] 157s vibrations/test_vib.py ................................... [ 99%] 157s vibrations/test_vibrations_example.py . [100%] 157s 157s =============================== warnings summary =============================== 157s :488 157s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 157s 157s calculator/turbomole/test_turbomole_calculator.py::test_turbomole_default 157s /usr/lib/python3/dist-packages/ase/calculators/turbomole/parameters.py:449: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 157s if k in list(self.parameter_spec[p].keys()): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s constraints/test_fix_symmetry.py::test_fail_md 157s /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 157s result = testfunction(**testargs) 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s db/test_mysql.py::test_write_read_with_calculator 157s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 157s def __hash__(self) -> int: 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s db/test_mysql.py::test_write_read_with_calculator 157s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 157s def __hash__(self) -> int: 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s db/test_mysql.py::test_write_read_with_calculator 157s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 157s def __hash__(self) -> int: 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s fio/test_oi.py::test_ioformat[eps] 157s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 157s class Tag(str): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s fio/test_oi.py::test_ioformat[eps] 157s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 157s class Tag(str): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 157s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 157s def lru_cache(maxsize=128, typed=False): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s geometry/test_analysis.py::test_analysis 157s /usr/lib/python3/dist-packages/scipy/sparse/_coo.py:215: ResourceWarning: unclosed database in 157s self.coords = tuple(np.asarray(idx, dtype=idx_dtype) 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s gui/test_run.py::test_surface 157s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 157s def __hash__(self) -> int: 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s md/test_bussi.py::test_bussi 157s /usr/lib/python3/dist-packages/ase/test/md/test_bussi.py:15: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 157s with pytest.raises(ValueError): 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s optimize/test_optimizers.py::test_run_twice[SciPyFminCG] 157s /usr/lib/python3/dist-packages/numpy/_core/_ufunc_config.py:454: ResourceWarning: unclosed file <_io.BufferedWriter name='fragile_BFGSLineSearch.traj'> 157s self._token = _extobj_contextvar.set(extobj) 157s Enable tracemalloc to get traceback where the object was allocated. 157s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 157s 157s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 157s ==== 2964 passed, 532 skipped, 26 xfailed, 20 warnings in 93.63s (0:01:33) ===== 157s :0: DeprecationWarning: builtin type swigvarlink has no __module__ attribute 158s autopkgtest [17:35:56]: test command1: -----------------------] 158s command1 PASS 158s autopkgtest [17:35:56]: test command1: - - - - - - - - - - results - - - - - - - - - - 158s autopkgtest [17:35:56]: @@@@@@@@@@@@@@@@@@@@ summary 158s command1 PASS