0s autopkgtest [07:33:18]: starting date and time: 2026-01-23 07:33:18+0000 0s autopkgtest [07:33:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:33:18]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p6z3gkwq/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade nipype --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-3.secgroup --name adt-resolute-i386-nipype-20260123-073317-juju-7f2275-prod-proposed-migration-environment-20-2ae92fec-29d5-4a88-8de8-f84ba0a24c65 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-i386-nipype-20260123-073317-juju-7f2275-prod-proposed-migration-environment-20-2ae92fec-29d5-4a88-8de8-f84ba0a24c65 from image adt/ubuntu-resolute-amd64-server-20260123.img (UUID 789dbc23-4f1b-4e7c-bcab-98e6eebf04f2)... 87s autopkgtest [07:34:45]: testbed dpkg architecture: amd64 87s autopkgtest [07:34:45]: testbed apt version: 3.1.13 87s autopkgtest [07:34:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s autopkgtest [07:34:45]: testbed release detected to be: None 88s autopkgtest [07:34:46]: updating testbed package index (apt update) 88s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 89s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 89s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 89s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.5 kB] 89s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 89s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1058 kB] 89s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 89s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [104 kB] 92s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [124 kB] 92s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3384 B] 92s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 92s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 92s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 92s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [926 kB] 92s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [402 kB] 92s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.3 kB] 92s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.6 kB] 92s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 92s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [564 B] 93s Fetched 2920 kB in 4s (752 kB/s) 93s Reading package lists... 94s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 94s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 94s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 94s Reading package lists... 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s The following packages were automatically installed and are no longer required: 95s python3.13 python3.13-minimal 95s Use 'sudo apt autoremove' to remove them. 95s The following NEW packages will be installed: 95s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 95s The following packages will be upgraded: 95s libpython3-stdlib python3 python3-gdbm python3-minimal 95s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 6769 kB of archives. 95s After this operation, 24.5 MB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 96s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 96s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 96s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 96s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 96s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 96s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 96s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 96s dpkg-preconfigure: unable to re-open stdin: No such file or directory 96s Fetched 6769 kB in 1s (6347 kB/s) 96s Selecting previously unselected package libpython3.14-minimal:amd64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124176 files and directories currently installed.) 96s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 96s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 96s Selecting previously unselected package python3.14-minimal. 96s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 96s Unpacking python3.14-minimal (3.14.2-1) ... 96s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 96s Setting up python3.14-minimal (3.14.2-1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 97s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 97s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 97s Setting up python3-minimal (3.14.2-1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 97s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 97s running python pre-rtupdate hooks for python3.14... 97s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 97s Selecting previously unselected package libpython3.14-stdlib:amd64. 97s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ... 97s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 97s Selecting previously unselected package python3.14. 97s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ... 97s Unpacking python3.14 (3.14.2-1) ... 97s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ... 97s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 97s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 97s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 97s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 97s Setting up python3.14 (3.14.2-1) ... 98s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 98s Setting up python3-gdbm (3.14.2-1) ... 98s Setting up python3 (3.14.2-1) ... 98s running python rtupdate hooks for python3.14... 98s running python post-rtupdate hooks for python3.14... 98s Processing triggers for man-db (2.13.1-1) ... 99s Processing triggers for systemd (259-1ubuntu2) ... 99s autopkgtest [07:34:57]: upgrading testbed (apt dist-upgrade and autopurge) 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s The following packages were automatically installed and are no longer required: 99s python3.13 python3.13-minimal 99s Use 'sudo apt autoremove' to remove them. 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Solving dependencies... 99s The following packages will be REMOVED: 99s python3.13* python3.13-minimal* 100s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 100s After this operation, 7860 kB disk space will be freed. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124948 files and directories currently installed.) 100s Removing python3.13 (3.13.11-1) ... 100s Removing python3.13-minimal (3.13.11-1) ... 100s Processing triggers for man-db (2.13.1-1) ... 100s Processing triggers for systemd (259-1ubuntu2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124921 files and directories currently installed.) 100s Purging configuration files for python3.13-minimal (3.13.11-1) ... 103s autopkgtest [07:35:00]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 103s autopkgtest [07:35:01]: @@@@@@@@@@@@@@@@@@@@ apt-source nipype 104s Get:1 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (dsc) [2988 B] 104s Get:2 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (tar) [2925 kB] 104s Get:3 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (diff) [17.5 kB] 104s gpgv: Signature made Sat Dec 20 11:29:54 2025 UTC 104s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 104s gpgv: issuer "emollier@debian.org" 104s gpgv: Can't check signature: No public key 104s dpkg-source: warning: cannot verify inline signature for ./nipype_1.10.0-1.dsc: no acceptable signature found 104s autopkgtest [07:35:02]: testing package nipype version 1.10.0-1 105s autopkgtest [07:35:03]: build not needed 105s autopkgtest [07:35:03]: test run-unit-test: preparing testbed 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Solving dependencies... 106s The following NEW packages will be installed: 106s diffstat docutils-common fontconfig fontconfig-config fonts-dejavu-core 106s fonts-dejavu-mono gettext graphviz libaec0 libaom3 libblas3 libcairo2 106s libcdt6 libcgraph8 libdatrie1 libde265-0 libdeflate0 libfontconfig1 libgd3 106s libgfortran5 libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 106s libgvplugin-pango8 libgvpr2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 106s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libimagequant0 106s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-underscore libjson-perl 106s liblapack3 liblerc4 libltdl7 liblzf1 libpango-1.0-0 libpangocairo-1.0-0 106s libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libqhull-r8.0 libsharpyuv0 106s libsz2 libthai-data libthai0 libtiff6 libwebp7 libxcb-render0 libxcb-shm0 106s libxdot4 libxpm4 libxrender1 libxslt1.1 python-nipype-doc python3-acres 106s python3-alabaster python3-all python3-ci-info python3-click 106s python3-decorator python3-deepdiff python3-defusedxml python3-dipy 106s python3-dipy-lib python3-docutils python3-etelemetry python3-execnet 106s python3-filelock python3-h5py python3-h5py-serial python3-imagesize 106s python3-iniconfig python3-jsonpickle python3-looseversion python3-lxml 106s python3-networkx python3-nibabel python3-nipype python3-numpy 106s python3-numpy-dev python3-orderly-set python3-pandas python3-pandas-lib 106s python3-pluggy python3-prov python3-psutil python3-puremagic python3-pydot 106s python3-pytest python3-pytest-xdist python3-pytz python3-rdflib 106s python3-roman-numerals python3-scipy python3-setuptools-scm 106s python3-simplejson python3-snowballstemmer python3-sphinx python3-tqdm 106s python3-traits python3-trx-python python3.13 python3.13-minimal quilt 106s sgml-base sphinx-common xml-core 107s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 93.3 MB of archives. 107s After this operation, 478 MB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-minimal amd64 3.13.11-1 [2408 kB] 107s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 107s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 107s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 107s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 107s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 108s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13 amd64 3.13.11-1 [758 kB] 108s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 diffstat amd64 1.68-1 [30.3 kB] 108s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 108s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19build1 [20.3 kB] 108s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 docutils-common all 0.22.4+dfsg-1 [130 kB] 108s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 108s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 108s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 108s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 108s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.15.0-2.4ubuntu1 [178 kB] 108s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 108s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 gettext amd64 0.23.2-1 [1019 kB] 108s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcdt6 amd64 14.1.1-2ubuntu2 [20.1 kB] 108s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcgraph8 amd64 14.1.1-2ubuntu2 [55.3 kB] 108s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 108s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpathplan4 amd64 14.1.1-2ubuntu2 [26.3 kB] 108s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxdot4 amd64 14.1.1-2ubuntu2 [23.5 kB] 108s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvc7 amd64 14.1.1-2ubuntu2 [397 kB] 108s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvpr2 amd64 14.1.1-2ubuntu2 [128 kB] 108s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 108s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 108s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 108s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 108s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 108s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 108s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 108s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 108s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 108s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 108s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 108s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 108s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 108s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 108s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 108s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 108s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 108s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 108s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 108s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 108s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libgd3 amd64 2.3.3-13ubuntu1 [130 kB] 108s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvplugin-gd8 amd64 14.1.1-2ubuntu2 [25.5 kB] 108s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 108s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 108s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 108s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 108s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 108s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.4-1 [240 kB] 108s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.4-1 [53.2 kB] 108s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.4-1 [29.0 kB] 108s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvplugin-pango8 amd64 14.1.1-2ubuntu2 [24.6 kB] 108s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 graphviz amd64 14.1.1-2ubuntu2 [58.5 kB] 108s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 108s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 108s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 108s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 108s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 108s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-underscore all 1.13.7~dfsg+~1.13.0-1 [86.4 kB] 108s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 108s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 108s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 108s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 108s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-nipype-doc all 1.10.0-1 [1243 kB] 108s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-acres all 0.5.0-2 [8256 B] 108s Get:70 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.14.2-1 [890 B] 108s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ci-info all 0.3.0-1build1 [7556 B] 108s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 108s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 108s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jsonpickle all 4.0.2+dfsg-2 [40.1 kB] 108s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-orderly-set all 5.5.0-2 [15.3 kB] 108s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-deepdiff all 8.6.1-1 [75.5 kB] 108s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-defusedxml all 0.7.1-3build1 [42.4 kB] 108s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 108s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 108s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-3 [18.8 MB] 108s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nibabel all 5.3.3-1 [2699 kB] 109s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-7 [93.3 kB] 109s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-setuptools-scm all 8.2.1-4 [32.8 kB] 109s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-trx-python all 0.3-2 [41.0 kB] 109s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dipy-lib amd64 1.11.0-3 [3875 kB] 109s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dipy all 1.11.0-3 [3623 kB] 109s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-roman-numerals all 4.1.0-1 [8660 B] 109s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-docutils all 0.22.4+dfsg-1 [439 kB] 109s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-etelemetry all 0.3.1-1build1 [7550 B] 109s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-execnet all 2.1.1-1build1 [33.5 kB] 109s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-filelock all 3.20.3-1 [13.5 kB] 109s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-imagesize all 1.4.1-1build1 [6900 B] 109s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 109s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-looseversion all 1.3.0-3build1 [8498 B] 109s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 109s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 109s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rdflib all 7.1.1-3 [427 kB] 109s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pydot all 4.0.1-1 [35.8 kB] 109s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-prov all 2.1.1-1 [101 kB] 109s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-puremagic all 1.30-1 [39.5 kB] 109s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-simplejson amd64 3.20.1-1build1 [62.4 kB] 109s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traits amd64 6.4.3-2build3 [4094 kB] 109s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 109s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nipype all 1.10.0-1 [1961 kB] 110s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 110s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 110s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 110s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 110s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 110s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-xdist all 3.8.0-4 [34.7 kB] 110s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-snowballstemmer all 3.0.1-1 [65.9 kB] 110s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-common all 8.2.3-12 [657 kB] 110s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-alabaster all 0.7.16-0.1build1 [18.6 kB] 110s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-sphinx all 8.2.3-12 [483 kB] 110s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 quilt all 0.68-1 [439 kB] 110s Fetched 93.3 MB in 4s (21.6 MB/s) 110s Selecting previously unselected package python3.13-minimal. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124923 files and directories currently installed.) 110s Preparing to unpack .../000-python3.13-minimal_3.13.11-1_amd64.deb ... 110s Unpacking python3.13-minimal (3.13.11-1) ... 110s Selecting previously unselected package python3-numpy-dev:amd64. 111s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 111s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 111s Selecting previously unselected package libblas3:amd64. 111s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_amd64.deb ... 111s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 111s Selecting previously unselected package libgfortran5:amd64. 111s Preparing to unpack .../003-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 111s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 111s Selecting previously unselected package liblapack3:amd64. 111s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 111s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 111s Selecting previously unselected package python3-numpy. 111s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 111s Unpacking python3-numpy (1:2.3.5+ds-3) ... 111s Selecting previously unselected package python3.13. 111s Preparing to unpack .../006-python3.13_3.13.11-1_amd64.deb ... 111s Unpacking python3.13 (3.13.11-1) ... 111s Selecting previously unselected package diffstat. 111s Preparing to unpack .../007-diffstat_1.68-1_amd64.deb ... 111s Unpacking diffstat (1.68-1) ... 111s Selecting previously unselected package sgml-base. 111s Preparing to unpack .../008-sgml-base_1.31+nmu1_all.deb ... 111s Unpacking sgml-base (1.31+nmu1) ... 111s Selecting previously unselected package xml-core. 111s Preparing to unpack .../009-xml-core_0.19build1_all.deb ... 111s Unpacking xml-core (0.19build1) ... 111s Selecting previously unselected package docutils-common. 111s Preparing to unpack .../010-docutils-common_0.22.4+dfsg-1_all.deb ... 111s Unpacking docutils-common (0.22.4+dfsg-1) ... 111s Selecting previously unselected package fonts-dejavu-mono. 111s Preparing to unpack .../011-fonts-dejavu-mono_2.37-8build1_all.deb ... 111s Unpacking fonts-dejavu-mono (2.37-8build1) ... 111s Selecting previously unselected package fonts-dejavu-core. 111s Preparing to unpack .../012-fonts-dejavu-core_2.37-8build1_all.deb ... 111s Unpacking fonts-dejavu-core (2.37-8build1) ... 111s Selecting previously unselected package fontconfig-config. 111s Preparing to unpack .../013-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 111s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 111s Selecting previously unselected package libfontconfig1:amd64. 111s Preparing to unpack .../014-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 111s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 111s Selecting previously unselected package fontconfig. 111s Preparing to unpack .../015-fontconfig_2.15.0-2.4ubuntu1_amd64.deb ... 111s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 111s Selecting previously unselected package libgomp1:amd64. 111s Preparing to unpack .../016-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 111s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 111s Selecting previously unselected package gettext. 111s Preparing to unpack .../017-gettext_0.23.2-1_amd64.deb ... 111s Unpacking gettext (0.23.2-1) ... 111s Selecting previously unselected package libcdt6:amd64. 111s Preparing to unpack .../018-libcdt6_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libcdt6:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libcgraph8:amd64. 111s Preparing to unpack .../019-libcgraph8_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libcgraph8:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libltdl7:amd64. 111s Preparing to unpack .../020-libltdl7_2.5.4-9_amd64.deb ... 111s Unpacking libltdl7:amd64 (2.5.4-9) ... 111s Selecting previously unselected package libpathplan4:amd64. 111s Preparing to unpack .../021-libpathplan4_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libpathplan4:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libxdot4:amd64. 111s Preparing to unpack .../022-libxdot4_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libxdot4:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libgvc7:amd64. 111s Preparing to unpack .../023-libgvc7_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libgvc7:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libgvpr2:amd64. 111s Preparing to unpack .../024-libgvpr2_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libgvpr2:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libpixman-1-0:amd64. 111s Preparing to unpack .../025-libpixman-1-0_0.46.4-1_amd64.deb ... 111s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 111s Selecting previously unselected package libxcb-render0:amd64. 111s Preparing to unpack .../026-libxcb-render0_1.17.0-2build1_amd64.deb ... 111s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 111s Selecting previously unselected package libxcb-shm0:amd64. 111s Preparing to unpack .../027-libxcb-shm0_1.17.0-2build1_amd64.deb ... 111s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 111s Selecting previously unselected package libxrender1:amd64. 111s Preparing to unpack .../028-libxrender1_1%3a0.9.12-1_amd64.deb ... 111s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 111s Selecting previously unselected package libcairo2:amd64. 111s Preparing to unpack .../029-libcairo2_1.18.4-3_amd64.deb ... 111s Unpacking libcairo2:amd64 (1.18.4-3) ... 111s Selecting previously unselected package libsharpyuv0:amd64. 111s Preparing to unpack .../030-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 111s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 111s Selecting previously unselected package libaom3:amd64. 111s Preparing to unpack .../031-libaom3_3.13.1-2_amd64.deb ... 111s Unpacking libaom3:amd64 (3.13.1-2) ... 111s Selecting previously unselected package libheif-plugin-aomdec:amd64. 111s Preparing to unpack .../032-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 111s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 111s Selecting previously unselected package libde265-0:amd64. 111s Preparing to unpack .../033-libde265-0_1.0.16-1build1_amd64.deb ... 111s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 111s Selecting previously unselected package libheif-plugin-libde265:amd64. 111s Preparing to unpack .../034-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 111s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 111s Selecting previously unselected package libheif1:amd64. 111s Preparing to unpack .../035-libheif1_1.21.2-1_amd64.deb ... 111s Unpacking libheif1:amd64 (1.21.2-1) ... 111s Selecting previously unselected package libimagequant0:amd64. 111s Preparing to unpack .../036-libimagequant0_2.18.0-1build1_amd64.deb ... 111s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 111s Selecting previously unselected package libjpeg-turbo8:amd64. 111s Preparing to unpack .../037-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 111s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 111s Selecting previously unselected package libjpeg8:amd64. 111s Preparing to unpack .../038-libjpeg8_8c-2ubuntu11_amd64.deb ... 111s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libdeflate0:amd64. 111s Preparing to unpack .../039-libdeflate0_1.23-2_amd64.deb ... 111s Unpacking libdeflate0:amd64 (1.23-2) ... 111s Selecting previously unselected package libjbig0:amd64. 111s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 111s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 111s Selecting previously unselected package liblerc4:amd64. 111s Preparing to unpack .../041-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 111s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 111s Selecting previously unselected package libwebp7:amd64. 111s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_amd64.deb ... 111s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 111s Selecting previously unselected package libtiff6:amd64. 111s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 111s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 111s Selecting previously unselected package libxpm4:amd64. 111s Preparing to unpack .../044-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 111s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 111s Selecting previously unselected package libgd3:amd64. 111s Preparing to unpack .../045-libgd3_2.3.3-13ubuntu1_amd64.deb ... 111s Unpacking libgd3:amd64 (2.3.3-13ubuntu1) ... 111s Selecting previously unselected package libgvplugin-gd8:amd64. 111s Preparing to unpack .../046-libgvplugin-gd8_14.1.1-2ubuntu2_amd64.deb ... 111s Unpacking libgvplugin-gd8:amd64 (14.1.1-2ubuntu2) ... 111s Selecting previously unselected package libgraphite2-3:amd64. 111s Preparing to unpack .../047-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 111s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 111s Selecting previously unselected package libharfbuzz0b:amd64. 111s Preparing to unpack .../048-libharfbuzz0b_12.3.0-4_amd64.deb ... 111s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 111s Selecting previously unselected package libthai-data. 111s Preparing to unpack .../049-libthai-data_0.1.30-1_all.deb ... 111s Unpacking libthai-data (0.1.30-1) ... 111s Selecting previously unselected package libdatrie1:amd64. 111s Preparing to unpack .../050-libdatrie1_0.2.14-1_amd64.deb ... 111s Unpacking libdatrie1:amd64 (0.2.14-1) ... 111s Selecting previously unselected package libthai0:amd64. 111s Preparing to unpack .../051-libthai0_0.1.30-1_amd64.deb ... 111s Unpacking libthai0:amd64 (0.1.30-1) ... 111s Selecting previously unselected package libpango-1.0-0:amd64. 111s Preparing to unpack .../052-libpango-1.0-0_1.56.4-1_amd64.deb ... 111s Unpacking libpango-1.0-0:amd64 (1.56.4-1) ... 112s Selecting previously unselected package libpangoft2-1.0-0:amd64. 112s Preparing to unpack .../053-libpangoft2-1.0-0_1.56.4-1_amd64.deb ... 112s Unpacking libpangoft2-1.0-0:amd64 (1.56.4-1) ... 112s Selecting previously unselected package libpangocairo-1.0-0:amd64. 112s Preparing to unpack .../054-libpangocairo-1.0-0_1.56.4-1_amd64.deb ... 112s Unpacking libpangocairo-1.0-0:amd64 (1.56.4-1) ... 112s Selecting previously unselected package libgvplugin-pango8:amd64. 112s Preparing to unpack .../055-libgvplugin-pango8_14.1.1-2ubuntu2_amd64.deb ... 112s Unpacking libgvplugin-pango8:amd64 (14.1.1-2ubuntu2) ... 112s Selecting previously unselected package graphviz. 112s Preparing to unpack .../056-graphviz_14.1.1-2ubuntu2_amd64.deb ... 112s Unpacking graphviz (14.1.1-2ubuntu2) ... 112s Selecting previously unselected package libaec0:amd64. 112s Preparing to unpack .../057-libaec0_1.1.4-2_amd64.deb ... 112s Unpacking libaec0:amd64 (1.1.4-2) ... 112s Selecting previously unselected package libsz2:amd64. 112s Preparing to unpack .../058-libsz2_1.1.4-2_amd64.deb ... 112s Unpacking libsz2:amd64 (1.1.4-2) ... 112s Selecting previously unselected package libhdf5-310:amd64. 112s Preparing to unpack .../059-libhdf5-310_1.14.5+repack-4_amd64.deb ... 112s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 112s Selecting previously unselected package libhdf5-hl-310:amd64. 112s Preparing to unpack .../060-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 112s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 112s Selecting previously unselected package libjs-jquery. 112s Preparing to unpack .../061-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 112s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 112s Selecting previously unselected package libjs-underscore. 112s Preparing to unpack .../062-libjs-underscore_1.13.7~dfsg+~1.13.0-1_all.deb ... 112s Unpacking libjs-underscore (1.13.7~dfsg+~1.13.0-1) ... 112s Selecting previously unselected package libjson-perl. 112s Preparing to unpack .../063-libjson-perl_4.10000-1_all.deb ... 112s Unpacking libjson-perl (4.10000-1) ... 112s Selecting previously unselected package liblzf1:amd64. 112s Preparing to unpack .../064-liblzf1_3.6-4build1_amd64.deb ... 112s Unpacking liblzf1:amd64 (3.6-4build1) ... 112s Selecting previously unselected package libqhull-r8.0:amd64. 112s Preparing to unpack .../065-libqhull-r8.0_2020.2-8_amd64.deb ... 112s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 112s Selecting previously unselected package libxslt1.1:amd64. 112s Preparing to unpack .../066-libxslt1.1_1.1.43-0.3_amd64.deb ... 112s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 112s Selecting previously unselected package python-nipype-doc. 112s Preparing to unpack .../067-python-nipype-doc_1.10.0-1_all.deb ... 112s Unpacking python-nipype-doc (1.10.0-1) ... 112s Selecting previously unselected package python3-acres. 112s Preparing to unpack .../068-python3-acres_0.5.0-2_all.deb ... 112s Unpacking python3-acres (0.5.0-2) ... 112s Selecting previously unselected package python3-all. 112s Preparing to unpack .../069-python3-all_3.14.2-1_amd64.deb ... 112s Unpacking python3-all (3.14.2-1) ... 112s Selecting previously unselected package python3-ci-info. 112s Preparing to unpack .../070-python3-ci-info_0.3.0-1build1_all.deb ... 112s Unpacking python3-ci-info (0.3.0-1build1) ... 112s Selecting previously unselected package python3-click. 112s Preparing to unpack .../071-python3-click_8.2.0+0.really.8.1.8-1build1_all.deb ... 112s Unpacking python3-click (8.2.0+0.really.8.1.8-1build1) ... 112s Selecting previously unselected package python3-decorator. 112s Preparing to unpack .../072-python3-decorator_5.2.1-2_all.deb ... 112s Unpacking python3-decorator (5.2.1-2) ... 112s Selecting previously unselected package python3-jsonpickle. 112s Preparing to unpack .../073-python3-jsonpickle_4.0.2+dfsg-2_all.deb ... 112s Unpacking python3-jsonpickle (4.0.2+dfsg-2) ... 112s Selecting previously unselected package python3-orderly-set. 112s Preparing to unpack .../074-python3-orderly-set_5.5.0-2_all.deb ... 112s Unpacking python3-orderly-set (5.5.0-2) ... 112s Selecting previously unselected package python3-deepdiff. 112s Preparing to unpack .../075-python3-deepdiff_8.6.1-1_all.deb ... 112s Unpacking python3-deepdiff (8.6.1-1) ... 112s Selecting previously unselected package python3-defusedxml. 112s Preparing to unpack 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unselected package quilt. 113s Preparing to unpack .../114-quilt_0.68-1_all.deb ... 113s Unpacking quilt (0.68-1) ... 113s Setting up libxdot4:amd64 (14.1.1-2ubuntu2) ... 113s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 113s Setting up python3-iniconfig (2.1.0-2) ... 114s Setting up libcdt6:amd64 (14.1.1-2ubuntu2) ... 114s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 114s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 114s Setting up libaom3:amd64 (3.13.1-2) ... 114s Setting up python3-filelock (3.20.3-1) ... 114s Setting up python3-jsonpickle (4.0.2+dfsg-2) ... 114s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 114s Setting up libxpm4:amd64 (1:3.5.17-1build3) ... 114s Setting up python3-traits (6.4.3-2build3) ... 114s Setting up libxrender1:amd64 (1:0.9.12-1) ... 114s Setting up libdatrie1:amd64 (0.2.14-1) ... 114s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 114s Setting up python3-defusedxml (0.7.1-3build1) ... 115s Setting up python3-alabaster 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/usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 118s Setting up python3-orderly-set (5.5.0-2) ... 118s Setting up python3-snowballstemmer (3.0.1-1) ... 118s Setting up libpathplan4:amd64 (14.1.1-2ubuntu2) ... 118s Setting up liblzf1:amd64 (3.6-4build1) ... 118s Setting up diffstat (1.68-1) ... 118s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 118s Setting up fonts-dejavu-mono (2.37-8build1) ... 118s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 118s Setting up fonts-dejavu-core (2.37-8build1) ... 118s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 118s Setting up libltdl7:amd64 (2.5.4-9) ... 118s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 118s Setting up python3-ci-info (0.3.0-1build1) ... 118s Setting up python3-pluggy (1.6.0-2) ... 118s Setting up libcgraph8:amd64 (14.1.1-2ubuntu2) ... 118s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 118s Setting up libgvpr2:amd64 (14.1.1-2ubuntu2) ... 118s Setting up python3-looseversion (1.3.0-3build1) ... 118s Setting up python3-rdflib (7.1.1-3) ... 119s Setting up libjson-perl (4.10000-1) ... 119s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 119s Setting up python3-roman-numerals (4.1.0-1) ... 119s Setting up python3.13-minimal (3.13.11-1) ... 119s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 119s Setting up libthai-data (0.1.30-1) ... 119s Setting up sgml-base (1.31+nmu1) ... 119s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 119s Setting up libde265-0:amd64 (1.0.16-1build1) ... 119s Setting up python3-execnet (2.1.1-1build1) ... 120s Setting up libsz2:amd64 (1.1.4-2) ... 120s Setting up libjs-underscore (1.13.7~dfsg+~1.13.0-1) ... 120s Setting up python3-imagesize (1.4.1-1build1) ... 120s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 120s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 120s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 120s Setting up gettext (0.23.2-1) ... 120s Setting up python3.13 (3.13.11-1) ... 120s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 120s Setting up python3-pytest (9.0.2-2) ... 121s Setting up python3-all (3.14.2-1) ... 121s Setting up quilt (0.68-1) ... 121s Setting up python3-etelemetry (0.3.1-1build1) ... 121s Setting up libthai0:amd64 (0.1.30-1) ... 121s Setting up python-nipype-doc (1.10.0-1) ... 121s Setting up sphinx-common (8.2.3-12) ... 121s Setting up python3-numpy (1:2.3.5+ds-3) ... 123s Setting up libgvc7:amd64 (14.1.1-2ubuntu2) ... 123s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 123s Setting up python3-lxml:amd64 (6.0.2-1) ... 123s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 123s Setting up xml-core (0.19build1) ... 123s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 123s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 123s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 125s Regenerating fonts cache... done. 125s Setting up python3-deepdiff (8.6.1-1) ... 126s Setting up python3-scipy (1.16.3-3) ... 130s Setting up python3-pytest-xdist (3.8.0-4) ... 130s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 130s Setting up libpango-1.0-0:amd64 (1.56.4-1) ... 130s Setting up python3-h5py-serial (3.15.1-4) ... 130s Setting up libcairo2:amd64 (1.18.4-3) ... 130s Setting up python3-dipy-lib:amd64 (1.11.0-3) ... 130s Setting up python3-pandas (2.3.3+dfsg-3) ... 136s Setting up python3-nibabel (5.3.3-1) ... 136s Setting up python3-h5py (3.15.1-4) ... 137s Setting up libpangoft2-1.0-0:amd64 (1.56.4-1) ... 137s Setting up libpangocairo-1.0-0:amd64 (1.56.4-1) ... 137s Setting up python3-trx-python (0.3-2) ... 137s Setting up libgvplugin-pango8:amd64 (14.1.1-2ubuntu2) ... 137s Setting up python3-dipy (1.11.0-3) ... 138s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 138s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 138s Setting up libheif1:amd64 (1.21.2-1) ... 138s Setting up libgd3:amd64 (2.3.3-13ubuntu1) ... 138s Setting up libgvplugin-gd8:amd64 (14.1.1-2ubuntu2) ... 138s Setting up graphviz (14.1.1-2ubuntu2) ... 138s Setting up python3-pydot (4.0.1-1) ... 138s Setting up python3-prov (2.1.1-1) ... 138s Setting up python3-nipype (1.10.0-1) ... 140s Processing triggers for systemd (259-1ubuntu2) ... 140s Processing triggers for man-db (2.13.1-1) ... 140s Processing triggers for install-info (7.2-5) ... 140s Processing triggers for libc-bin (2.42-2ubuntu4) ... 140s Processing triggers for sgml-base (1.31+nmu1) ... 140s Setting up docutils-common (0.22.4+dfsg-1) ... 140s Processing triggers for sgml-base (1.31+nmu1) ... 140s Setting up python3-docutils (0.22.4+dfsg-1) ... 141s Setting up python3-sphinx (8.2.3-12) ... 143s autopkgtest [07:35:41]: test environment configured for cross building 143s autopkgtest [07:35:41]: test run-unit-test: [----------------------- 143s File series fully applied, ends at patch debian/patches/stabilize-makefiles.patch 143s Skip following Tests: not nipype.interfaces.io.BIDSDataGrabber 143s Testing with python3.13 in /tmp/autopkgtest.eE4QPb/autopkgtest_tmp: 143s ============================= test session starts ============================== 143s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 143s cachedir: .pytest_cache 143s rootdir: /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype 143s configfile: pytest.ini 143s plugins: typeguard-4.4.4, xdist-3.8.0 150s collecting ... collected 3014 items / 1 deselected / 3013 selected 150s 150s nipype/algorithms/confounds.py::nipype.algorithms.confounds.CompCor PASSED [ 0%] 150s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TCompCor PASSED [ 0%] 150s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TSNR PASSED [ 0%] 150s nipype/algorithms/metrics.py::nipype.algorithms.metrics.ErrorMap PASSED [ 0%] 150s 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nipype/interfaces/fsl/tests/test_auto_ImageStats.py::test_ImageStats_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_outputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_inputs PASSED [ 44%] 156s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_outputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_inputs PASSED [ 45%] 156s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_inputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_outputs PASSED [ 46%] 156s nipype/interfaces/fsl/tests/test_auto_SliceTimer.py::test_SliceTimer_inputs PASSED [ 46%] 156s 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 47%] 156s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 156s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 48%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 156s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[None] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[GIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_GZ] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR_GZ] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[None] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[GIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_GZ] SKIPPED [ 52%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_PAIR] SKIPPED [ 53%] 156s 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53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_GZ] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR_GZ] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[None] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[GIFTI] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_GZ] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR] SKIPPED [ 53%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR_GZ] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[None] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[GIFTI] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_GZ] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR] SKIPPED [ 54%] 156s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR_GZ] SKIPPED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.AvScale PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Complex PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertWarp PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertXFM PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ExtractROI PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageMaths PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageStats PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.InvWarp PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Merge PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.MotionOutliers PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Overlay PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotMotionParams PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotTimeSeries PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PowerSpectrum PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Reorient2Std PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.SigLoss PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slice PASSED [ 54%] 156s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slicer PASSED [ 54%] 156s 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[ 95%] 274s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 274s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 274s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 274s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 274s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 276s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 278s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 282s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 286s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 286s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 286s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 286s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 286s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 286s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 286s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 286s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 286s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 286s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 286s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 286s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 286s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 286s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 286s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 286s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 286s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 286s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 286s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 286s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 286s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 288s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 288s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 288s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 288s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 288s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 288s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 288s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 288s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 288s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 288s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 288s nipype/utils/tests/test_provenance.py::test_provenance PASSED [ 99%] 288s nipype/utils/tests/test_provenance.py::test_provenance_exists PASSED [ 99%] 289s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 289s 289s =============================== warnings summary =============================== 289s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 289s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 289s import sre_parse 289s 289s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 289s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 289s import sre_constants 289s 289s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 289s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 289s 289s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 289s 289s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 289s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 289s from dipy.viz.plotting import bundle_shape_profile 289s 289s nipype/pipeline/engine/tests/test_nodes.py:319 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 289s @pytest.mark.timeout(30) 289s 289s nipype/pipeline/plugins/tests/test_oar.py:33 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 289s @pytest.mark.timeout(60) 289s 289s nipype/pipeline/plugins/tests/test_pbs.py:32 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 289s @pytest.mark.timeout(60) 289s 289s nipype/utils/tests/test_provenance.py:16 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 289s @pytest.mark.timeout(60) 289s 289s nipype/utils/tests/test_provenance.py:29 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 289s @pytest.mark.timeout(60) 289s 289s nipype/workflows/__init__.py:27 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 289s warnings.warn(" ".join(_msg)) 289s 289s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 289s variance_explained = (s**2) / np.sum(s**2) 289s 289s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 289s warn( 289s 289s interfaces/dipy/tests/test_base.py::test_get_default_args 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 289s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 289s 289s interfaces/dipy/tests/test_base.py::test_get_default_args 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 289s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 289s 289s interfaces/dipy/tests/test_base.py::test_get_default_args 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 289s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 289s 289s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 289s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 289s warnings.warn( 289s 289s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 289s warnings.warn( 289s 289s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 289s warnings.warn( 289s 289s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 289s warnings.warn( 289s 289s pipeline/engine/tests/test_engine.py: 24 warnings 289s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 289s 289s See https://github.com/networkx/networkx/issues/5723 289s 289s pipeline/engine/tests/test_engine.py: 24 warnings 289s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 289s 289s See https://github.com/networkx/networkx/issues/5723 289s P = to_pydot(G) 289s 289s pipeline/engine/tests/test_utils.py::test_provenance 289s pipeline/engine/tests/test_utils.py::test_provenance 289s pipeline/engine/tests/test_utils.py::test_provenance 289s utils/tests/test_provenance.py::test_provenance_exists 289s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:269: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. 289s container = ConjunctiveGraph(identifier=identifier) 289s 289s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 289s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 289s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=4133) is multi-threaded, use of fork() may lead to deadlocks in the child. 289s self.pid = os.fork() 289s 289s utils/tests/test_misc.py::test_rgetcwd 289s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-0/test_rgetcwd0" instead. 289s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 289s 289s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 289s = 2741 passed, 267 skipped, 1 deselected, 5 xfailed, 75 warnings in 144.95s (0:02:24) = 290s Testing with python3.14 in /tmp/autopkgtest.eE4QPb/autopkgtest_tmp: 290s ============================= test session starts ============================== 290s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 290s cachedir: .pytest_cache 290s rootdir: /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype 290s configfile: pytest.ini 290s plugins: typeguard-4.4.4, xdist-3.8.0 296s collecting ... collected 3014 items / 1 deselected / 3013 selected 296s 296s nipype/algorithms/confounds.py::nipype.algorithms.confounds.CompCor PASSED [ 0%] 296s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TCompCor PASSED [ 0%] 296s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TSNR PASSED [ 0%] 296s nipype/algorithms/metrics.py::nipype.algorithms.metrics.ErrorMap PASSED [ 0%] 296s nipype/algorithms/metrics.py::nipype.algorithms.metrics.FuzzyOverlap PASSED [ 0%] 296s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Overlap PASSED [ 0%] 296s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Similarity PASSED [ 0%] 296s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVColumn PASSED [ 0%] 296s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVRow 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 47%] 302s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 302s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 48%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 302s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 302s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 302s 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nipype/pipeline/engine/tests/test_utils.py::test_format_node PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_init PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_connect PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_add_nodes PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_disconnect PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_workflow_add PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_doubleconnect PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_nested_workflow_doubleconnect PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_duplicate_node_check PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-True] PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-False] PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-True] PASSED [ 94%] 321s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-False] PASSED [ 94%] 337s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-True] PASSED [ 94%] 353s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-False] PASSED [ 94%] 369s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-True] PASSED [ 94%] 385s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-False] PASSED [ 94%] 385s nipype/pipeline/engine/tests/test_workflows.py::test_config_setting PASSED [ 94%] 385s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.merge_dict PASSED [ 94%] 385s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.synchronize_iterables PASSED [ 94%] 385s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.walk PASSED [ 94%] 385s nipype/pipeline/plugins/sge.py::nipype.pipeline.plugins.sge.qsub_sanitize_job_name PASSED [ 94%] 385s nipype/pipeline/plugins/tests/test_base.py::test_scipy_sparse PASSED [ 94%] 385s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[Linear] PASSED [ 94%] 389s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[MultiProc] PASSED [ 95%] 393s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[LegacyMultiProc] PASSED [ 95%] 393s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-Linear] PASSED [ 95%] 398s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-MultiProc] PASSED [ 95%] 402s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-LegacyMultiProc] PASSED [ 95%] 403s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-Linear] PASSED [ 95%] 405s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-MultiProc] PASSED [ 95%] 408s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] PASSED [ 95%] 408s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[Linear] PASSED [ 95%] 412s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[MultiProc] PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[LegacyMultiProc] PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_debug.py::test_debug PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_false SKIPPED [ 95%] 418s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_true SKIPPED [ 95%] 418s nipype/pipeline/plugins/tests/test_linear.py::test_run_in_series PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_multiproc.py::test_run_multiproc SKIPPED [ 95%] 418s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_memory_than_specified PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_threads_than_specified PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_gpu_threads_than_specified PASSED [ 95%] 418s nipype/pipeline/plugins/tests/test_multiproc.py::test_hold_job_until_procs_available SKIPPED [ 95%] 418s nipype/pipeline/plugins/tests/test_oar.py::test_run_oargraph SKIPPED [ 95%] 418s nipype/pipeline/plugins/tests/test_pbs.py::test_run_pbsgraph SKIPPED [ 95%] 422s nipype/pipeline/plugins/tests/test_sgelike.py::test_crashfile_creation PASSED [ 95%] 422s nipype/pipeline/plugins/tests/test_somaflow.py::test_run_somaflow SKIPPED [ 95%] 422s nipype/pipeline/plugins/tests/test_tools.py::test_report_crash PASSED [ 95%] 422s nipype/testing/tests/test_utils.py::test_tempfatfs SKIPPED (Cannot m...) [ 95%] 422s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 422s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 422s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 422s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 422s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 424s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 426s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 430s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 434s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 434s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 434s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 434s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 434s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 434s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 434s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 434s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 434s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 434s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 434s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 434s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 434s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 434s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 434s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 434s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 434s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 434s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 434s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 434s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 434s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 436s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 436s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 436s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 436s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 436s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 436s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 436s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 436s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 436s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 436s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 436s nipype/utils/tests/test_provenance.py::test_provenance SKIPPED (Test...) [ 99%] 436s nipype/utils/tests/test_provenance.py::test_provenance_exists SKIPPED [ 99%] 437s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 437s 437s =================================== FAILURES =================================== 437s _______________________________ test_provenance ________________________________ 437s 437s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-1/test_provenance0') 437s 437s def test_provenance(tmpdir): 437s metawf = pe.Workflow(name="meta") 437s metawf.base_dir = tmpdir.strpath 437s metawf.add_nodes([create_wf("wf%d" % i) for i in range(1)]) 437s eg = metawf.run(plugin="Linear") 437s prov_base = tmpdir.join("workflow_provenance_test").strpath 437s > psg = write_workflow_prov(eg, prov_base, format="all") 437s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 437s 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/engine/tests/test_utils.py:161: 437s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/engine/utils.py:1609: in write_workflow_prov 437s ps.write_provenance(filename, format=format) 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/provenance.py:455: in write_provenance 437s self.g.serialize(filename + ext, format="rdf", rdf_format=rdf_format) 437s /usr/lib/python3/dist-packages/prov/model.py:2727: in serialize 437s serializer = serializers.get(format)(self) 437s ^^^^^^^^^^^^^^^^^^^^^^^ 437s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:83: in get 437s Registry.load_serializers() 437s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:67: in load_serializers 437s from prov.serializers.provrdf import ProvRDFSerializer 437s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:15: in 437s from rdflib.graph import ConjunctiveGraph # type: ignore[import-not-found] 437s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 437s /usr/lib/python3/dist-packages/rdflib/__init__.py:168: in 437s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 437s /usr/lib/python3/dist-packages/rdflib/graph.py:292: in 437s from rdflib.resource import Resource 437s /usr/lib/python3/dist-packages/rdflib/resource.py:296: in 437s class Resource: 437s /usr/lib/python3/dist-packages/rdflib/resource.py:379: in Resource 437s def value(self, p=RDF.value, o=None, default=None, any=True): 437s ^^^^^^^^^ 437s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:285: in __getattr__ 437s return cls.__getitem__(name) 437s ^^^^^^^^^^^^^^^^^^^^^ 437s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 437s 437s cls = Namespace(Namespace('http://www.w3.org/1999/02/22-rdf-syntax-ns#')) 437s name = 'value', default = None 437s 437s @lru_cache(maxsize=None) 437s def __getitem__(cls, name: str, default=None) -> URIRef: 437s name = str(name) 437s 437s if name in _DFNS_RESERVED_ATTRS: 437s raise KeyError( 437s f"DefinedNamespace like object has no access item named {name!r}" 437s ) 437s elif name in _IGNORED_ATTR_LOOKUP: 437s raise KeyError() 437s if (cls._warn or cls._fail) and name not in cls: 437s if cls._fail: 437s > raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 437s E AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 437s 437s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:268: AttributeError 437s ----------------------------- Captured stdout call ----------------------------- 437s 260123-07:38:39,100 nipype.workflow INFO: 437s Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 437s 260123-07:38:39,101 nipype.workflow INFO: 437s Running serially. 437s 260123-07:38:39,101 nipype.workflow INFO: 437s [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 437s 260123-07:38:39,102 nipype.workflow INFO: 437s [Node] Executing "proc" 437s 260123-07:38:39,102 nipype.workflow INFO: 437s [Node] Finished "proc", elapsed time 0.000127s. 437s 260123-07:38:39,103 nipype.workflow INFO: 437s [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 437s 260123-07:38:39,104 nipype.workflow INFO: 437s [Node] Executing "proc2" 437s 260123-07:38:39,104 nipype.workflow INFO: 437s [Node] Finished "proc2", elapsed time 0.000131s. 437s ------------------------------ Captured log call ------------------------------- 437s INFO nipype.workflow:workflows.py:613 Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 437s INFO nipype.workflow:linear.py:31 Running serially. 437s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 437s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc" 437s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc", elapsed time 0.000127s. 437s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 437s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc2" 437s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc2", elapsed time 0.000131s. 437s =============================== warnings summary =============================== 437s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 437s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 437s import sre_parse 437s 437s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 437s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 437s import sre_constants 437s 437s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 437s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 437s 437s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 437s 437s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 437s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 437s from dipy.viz.plotting import bundle_shape_profile 437s 437s nipype/pipeline/engine/tests/test_nodes.py:319 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 437s @pytest.mark.timeout(30) 437s 437s nipype/pipeline/plugins/tests/test_oar.py:33 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 437s @pytest.mark.timeout(60) 437s 437s nipype/pipeline/plugins/tests/test_pbs.py:32 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 437s @pytest.mark.timeout(60) 437s 437s nipype/utils/tests/test_provenance.py:16 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 437s @pytest.mark.timeout(60) 437s 437s nipype/utils/tests/test_provenance.py:29 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 437s @pytest.mark.timeout(60) 437s 437s nipype/workflows/__init__.py:27 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 437s warnings.warn(" ".join(_msg)) 437s 437s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 437s variance_explained = (s**2) / np.sum(s**2) 437s 437s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 437s warn( 437s 437s interfaces/dipy/tests/test_base.py::test_get_default_args 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 437s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 437s 437s interfaces/dipy/tests/test_base.py::test_get_default_args 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 437s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 437s 437s interfaces/dipy/tests/test_base.py::test_get_default_args 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 437s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 437s 437s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 437s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 437s warnings.warn( 437s 437s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 437s warnings.warn( 437s 437s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 437s warnings.warn( 437s 437s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 437s warnings.warn( 437s 437s pipeline/engine/tests/test_engine.py: 24 warnings 437s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 437s 437s See https://github.com/networkx/networkx/issues/5723 437s 437s pipeline/engine/tests/test_engine.py: 24 warnings 437s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 437s 437s See https://github.com/networkx/networkx/issues/5723 437s P = to_pydot(G) 437s 437s utils/tests/test_misc.py::test_rgetcwd 437s /tmp/autopkgtest.eE4QPb/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-1/test_rgetcwd0" instead. 437s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 437s 437s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 437s =========================== short test summary info ============================ 437s FAILED nipype/pipeline/engine/tests/test_utils.py::test_provenance - Attribut... 437s = 1 failed, 2738 passed, 269 skipped, 1 deselected, 5 xfailed, 69 warnings in 145.73s (0:02:25) = 439s autopkgtest [07:40:37]: test run-unit-test: -----------------------] 439s autopkgtest [07:40:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 439s run-unit-test FAIL non-zero exit status 1 439s autopkgtest [07:40:37]: @@@@@@@@@@@@@@@@@@@@ summary 439s run-unit-test FAIL non-zero exit status 1