0s autopkgtest [03:47:43]: starting date and time: 2025-11-14 03:47:43+0000 0s autopkgtest [03:47:43]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:47:43]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qjzikuc1/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:2.3.4+ds-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-10.secgroup --name adt-resolute-i386-multiqc-20251114-034743-juju-7f2275-prod-proposed-migration-environment-15-3fa5e2d1-18f3-45e0-9b1d-ce15350bc6af --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-multiqc-20251114-034743-juju-7f2275-prod-proposed-migration-environment-15-3fa5e2d1-18f3-45e0-9b1d-ce15350bc6af from image adt/ubuntu-resolute-amd64-server-20251113.img (UUID d44790b8-9c68-4bcd-ba8f-9a124f30eed8)... 43s autopkgtest [03:48:26]: testbed dpkg architecture: amd64 43s autopkgtest [03:48:26]: testbed apt version: 3.1.11 44s autopkgtest [03:48:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s autopkgtest [03:48:27]: testbed release detected to be: None 45s autopkgtest [03:48:28]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 45s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 45s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 46s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [83.2 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.4 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [787 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [117 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [160 kB] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3120 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 46s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 46s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 46s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [236 kB] 46s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [477 kB] 46s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [16.0 kB] 46s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.9 kB] 46s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5984 B] 46s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [628 B] 47s Fetched 2088 kB in 1s (1929 kB/s) 48s Reading package lists... 48s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Reading package lists... 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s The following packages will be upgraded: 49s 3cpio cron cron-daemon-common fwupd libcap2 libcap2-bin libfwupd3 libpam-cap 49s liburcu8t64 libxml2-16 lto-disabled-list 49s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 7045 kB of archives. 49s After this operation, 53.2 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 cron amd64 3.0pl1-200ubuntu1 [88.6 kB] 49s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libcap2 amd64 1:2.75-10ubuntu1 [31.1 kB] 49s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libpam-cap amd64 1:2.75-10ubuntu1 [12.7 kB] 49s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libcap2-bin amd64 1:2.75-10ubuntu1 [33.5 kB] 49s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [632 kB] 50s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cron-daemon-common all 3.0pl1-200ubuntu1 [15.7 kB] 50s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 liburcu8t64 amd64 0.15.5-1 [64.2 kB] 50s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.12.0-1ubuntu1 [286 kB] 50s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fwupd amd64 2.0.17-6 [5730 kB] 50s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfwupd3 amd64 2.0.17-6 [139 kB] 50s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 lto-disabled-list all 72 [12.4 kB] 51s dpkg-preconfigure: unable to re-open stdin: No such file or directory 51s Fetched 7045 kB in 1s (6363 kB/s) 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82963 files and directories currently installed.) 51s Preparing to unpack .../cron_3.0pl1-200ubuntu1_amd64.deb ... 51s Unpacking cron (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 51s Preparing to unpack .../libcap2_1%3a2.75-10ubuntu1_amd64.deb ... 51s Unpacking libcap2:amd64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 51s Setting up libcap2:amd64 (1:2.75-10ubuntu1) ... 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82963 files and directories currently installed.) 51s Preparing to unpack .../0-libpam-cap_1%3a2.75-10ubuntu1_amd64.deb ... 51s Unpacking libpam-cap:amd64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 51s Preparing to unpack .../1-libcap2-bin_1%3a2.75-10ubuntu1_amd64.deb ... 51s Unpacking libcap2-bin (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 51s Preparing to unpack .../2-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... 51s Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) over (2.14.5+dfsg-0.2build1) ... 51s Preparing to unpack .../3-cron-daemon-common_3.0pl1-200ubuntu1_all.deb ... 51s Unpacking cron-daemon-common (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 51s Preparing to unpack .../4-liburcu8t64_0.15.5-1_amd64.deb ... 51s Unpacking liburcu8t64:amd64 (0.15.5-1) over (0.15.4-1) ... 51s Preparing to unpack .../5-3cpio_0.12.0-1ubuntu1_amd64.deb ... 51s Unpacking 3cpio (0.12.0-1ubuntu1) over (0.11.0-2ubuntu2) ... 51s Preparing to unpack .../6-fwupd_2.0.17-6_amd64.deb ... 51s Unpacking fwupd (2.0.17-6) over (2.0.17-2) ... 52s Preparing to unpack .../7-libfwupd3_2.0.17-6_amd64.deb ... 52s Unpacking libfwupd3:amd64 (2.0.17-6) over (2.0.17-2) ... 52s Preparing to unpack .../8-lto-disabled-list_72_all.deb ... 52s Unpacking lto-disabled-list (72) over (71) ... 52s Setting up liburcu8t64:amd64 (0.15.5-1) ... 52s Setting up 3cpio (0.12.0-1ubuntu1) ... 52s Setting up lto-disabled-list (72) ... 52s Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... 52s Setting up libfwupd3:amd64 (2.0.17-6) ... 52s Setting up libcap2-bin (1:2.75-10ubuntu1) ... 52s Setting up libpam-cap:amd64 (1:2.75-10ubuntu1) ... 52s Setting up fwupd (2.0.17-6) ... 52s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 52s fwupd.service is a disabled or a static unit not running, not starting it. 52s Setting up cron-daemon-common (3.0pl1-200ubuntu1) ... 52s Setting up cron (3.0pl1-200ubuntu1) ... 53s Processing triggers for dbus (1.16.2-2ubuntu2) ... 53s Processing triggers for libc-bin (2.42-2ubuntu2) ... 53s Processing triggers for man-db (2.13.1-1) ... 54s autopkgtest [03:48:37]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Solving dependencies... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [03:48:38]: rebooting testbed after setup commands that affected boot 82s autopkgtest [03:49:05]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 84s autopkgtest [03:49:07]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 88s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 88s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 88s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 88s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 88s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 88s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 88s gpgv: issuer "tchet@debian.org" 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 89s autopkgtest [03:49:12]: testing package multiqc version 1.21+dfsg-2 89s autopkgtest [03:49:12]: build not needed 90s autopkgtest [03:49:13]: test run-unit-test: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 91s The following NEW packages will be installed: 91s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 91s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 91s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 91s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 91s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 91s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 91s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 91s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 91s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 91s python3-decorator python3-fastjsonschema python3-fonttools python3-fs 91s python3-humanfriendly python3-humanize python3-importlib-metadata 91s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 91s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 91s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 91s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 91s python3-pyaml-env python3-pytz python3-rich-click python3-scipy 91s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 91s python3-tz python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 91s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 91s 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 96.8 MB of archives. 91s After this operation, 495 MB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-3ubuntu1 [147 kB] 91s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7 [259 kB] 91s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7 [2739 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-numpy amd64 1:2.3.4+ds-3ubuntu1 [8126 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 92s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 92s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 92s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 92s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 92s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 92s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 92s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 92s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 92s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 92s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 92s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-2 [171 kB] 92s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 92s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 92s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 92s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 92s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 92s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 92s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 92s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 92s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 92s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 92s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 92s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 92s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 92s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 92s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-7 [197 kB] 92s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 92s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 92s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 92s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 92s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 92s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 92s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 92s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 92s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 92s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 92s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 92s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 93s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanize all 4.12.1-1 [58.3 kB] 93s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 93s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown all 3.8.2-2 [75.2 kB] 93s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 93s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 93s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 93s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 93s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 93s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 93s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 93s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-2 [255 kB] 93s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 93s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 93s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 93s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-8ubuntu1 [91.1 kB] 93s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 93s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 93s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 93s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 93s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 93s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 93s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 93s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 93s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 93s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 94s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 94s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 94s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 94s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 94s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-4 [1746 B] 94s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 94s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 94s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 94s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 94s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 94s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 94s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyaml-env all 1.2.1-2 [9090 B] 94s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rich-click all 1.6.0-2 [18.0 kB] 94s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 94s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-colormath all 3.0.0-4 [36.6 kB] 94s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spectra all 0.1.0-1 [17.2 kB] 94s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lzstring all 1.0.4-3 [6262 B] 94s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 multiqc all 1.21+dfsg-2 [733 kB] 95s Fetched 96.8 MB in 3s (31.2 MB/s) 95s Selecting previously unselected package python3-numpy-dev:amd64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82962 files and directories currently installed.) 95s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.4+ds-3ubuntu1_amd64.deb ... 95s Unpacking python3-numpy-dev:amd64 (1:2.3.4+ds-3ubuntu1) ... 95s Selecting previously unselected package libblas3:amd64. 95s Preparing to unpack .../01-libblas3_3.12.1-7_amd64.deb ... 95s Unpacking libblas3:amd64 (3.12.1-7) ... 95s Selecting previously unselected package libgfortran5:amd64. 95s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 95s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 95s Selecting previously unselected package liblapack3:amd64. 95s Preparing to unpack .../03-liblapack3_3.12.1-7_amd64.deb ... 95s Unpacking liblapack3:amd64 (3.12.1-7) ... 95s Selecting previously unselected package python3-numpy. 95s Preparing to unpack .../04-python3-numpy_1%3a2.3.4+ds-3ubuntu1_amd64.deb ... 95s Unpacking python3-numpy (1:2.3.4+ds-3ubuntu1) ... 95s Selecting previously unselected package libtcl8.6:amd64. 95s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 95s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8) ... 95s Selecting previously unselected package fontconfig-config. 95s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 95s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 95s Selecting previously unselected package libfontconfig1:amd64. 95s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 95s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 95s Selecting previously unselected package libxrender1:amd64. 95s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_amd64.deb ... 95s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 95s Selecting previously unselected package libxft2:amd64. 95s Preparing to unpack .../11-libxft2_2.3.6-1build1_amd64.deb ... 95s Unpacking libxft2:amd64 (2.3.6-1build1) ... 95s Selecting previously unselected package x11-common. 95s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 95s Unpacking x11-common (1:7.7+24ubuntu1) ... 95s Selecting previously unselected package libxss1:amd64. 95s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 95s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 95s Selecting previously unselected package libtk8.6:amd64. 95s Preparing to unpack .../14-libtk8.6_8.6.17-1_amd64.deb ... 95s Unpacking libtk8.6:amd64 (8.6.17-1) ... 95s Selecting previously unselected package tk8.6-blt2.5. 95s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 95s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 95s Selecting previously unselected package blt. 95s Preparing to unpack .../16-blt_2.5.3+dfsg-8_amd64.deb ... 95s Unpacking blt (2.5.3+dfsg-8) ... 95s Selecting previously unselected package fonts-glyphicons-halflings. 95s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 95s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 95s Selecting previously unselected package fonts-lyx. 95s Preparing to unpack .../18-fonts-lyx_2.4.4-2_all.deb ... 95s Unpacking fonts-lyx (2.4.4-2) ... 95s Selecting previously unselected package libdeflate0:amd64. 95s Preparing to unpack .../19-libdeflate0_1.23-2_amd64.deb ... 95s Unpacking libdeflate0:amd64 (1.23-2) ... 95s Selecting previously unselected package libgomp1:amd64. 95s Preparing to unpack .../20-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 95s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 95s Selecting previously unselected package libgraphite2-3:amd64. 95s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 95s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 95s Selecting previously unselected package libharfbuzz0b:amd64. 95s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_amd64.deb ... 95s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 95s Selecting previously unselected package libimagequant0:amd64. 95s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_amd64.deb ... 95s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 95s Selecting previously unselected package libjpeg-turbo8:amd64. 95s 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.../29-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 95s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 96s Selecting previously unselected package libjs-jquery-ui. 96s Preparing to unpack .../30-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 96s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 96s Selecting previously unselected package liblcms2-2:amd64. 96s Preparing to unpack .../31-liblcms2-2_2.16-2_amd64.deb ... 96s Unpacking liblcms2-2:amd64 (2.16-2) ... 96s Selecting previously unselected package liblerc4:amd64. 96s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 96s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 96s Selecting previously unselected package libqhull-r8.0:amd64. 96s Preparing to unpack .../33-libqhull-r8.0_2020.2-7_amd64.deb ... 96s Unpacking libqhull-r8.0:amd64 (2020.2-7) ... 96s Selecting previously unselected package libraqm0:amd64. 96s Preparing to unpack .../34-libraqm0_0.10.3-1_amd64.deb ... 96s Unpacking libraqm0:amd64 (0.10.3-1) ... 96s Selecting previously unselected package libsharpyuv0:amd64. 96s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_amd64.deb ... 96s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 96s Selecting previously unselected package libjbig0:amd64. 96s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 96s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 96s Selecting previously unselected package libwebp7:amd64. 96s Preparing to unpack .../37-libwebp7_1.5.0-0.1_amd64.deb ... 96s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 96s Selecting previously unselected package libtiff6:amd64. 96s Preparing to unpack .../38-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 96s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 96s Selecting previously unselected package libwebpdemux2:amd64. 96s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_amd64.deb ... 96s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 96s Selecting previously unselected package libwebpmux3:amd64. 96s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_amd64.deb ... 96s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 96s Selecting previously unselected package libxslt1.1:amd64. 96s Preparing to unpack .../41-libxslt1.1_1.1.43-0.3_amd64.deb ... 96s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 96s Selecting previously unselected package libzopfli1. 96s Preparing to unpack .../42-libzopfli1_1.0.3-3_amd64.deb ... 96s Unpacking libzopfli1 (1.0.3-3) ... 96s Selecting previously unselected package python3-click. 96s Preparing to unpack .../43-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 96s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 96s Selecting previously unselected package python3-humanfriendly. 96s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 96s Unpacking python3-humanfriendly (10.0-6) ... 96s Selecting previously unselected package python3-coloredlogs. 96s Preparing to unpack .../45-python3-coloredlogs_15.0.1-1_all.deb ... 96s Unpacking python3-coloredlogs (15.0.1-1) ... 96s Selecting previously unselected package python3-humanize. 96s Preparing to unpack .../46-python3-humanize_4.12.1-1_all.deb ... 96s Unpacking python3-humanize (4.12.1-1) ... 96s Selecting previously unselected package python3-importlib-metadata. 96s Preparing to unpack .../47-python3-importlib-metadata_8.7.0-2_all.deb ... 96s Unpacking python3-importlib-metadata (8.7.0-2) ... 96s Selecting previously unselected package python3-markdown. 96s Preparing to unpack .../48-python3-markdown_3.8.2-2_all.deb ... 96s Unpacking python3-markdown (3.8.2-2) ... 96s Selecting previously unselected package python-matplotlib-data. 96s Preparing to unpack .../49-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 96s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 96s Selecting previously unselected package libopenjp2-7:amd64. 96s Preparing to unpack .../50-libopenjp2-7_2.5.3-2.1_amd64.deb ... 96s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 96s Selecting previously unselected package python3-pil:amd64. 96s Preparing to unpack .../51-python3-pil_11.3.0-1ubuntu2_amd64.deb ... 96s Unpacking python3-pil:amd64 (11.3.0-1ubuntu2) ... 96s Selecting previously unselected package python3.14-tk. 96s Preparing to unpack .../52-python3.14-tk_3.14.0-4_amd64.deb ... 96s Unpacking python3.14-tk (3.14.0-4) ... 96s Selecting previously unselected package python3.13-tk. 96s Preparing to unpack .../53-python3.13-tk_3.13.9-1_amd64.deb ... 96s Unpacking python3.13-tk (3.13.9-1) ... 96s Selecting previously unselected package python3-tk:amd64. 96s Preparing to unpack .../54-python3-tk_3.13.9-1_amd64.deb ... 96s Unpacking python3-tk:amd64 (3.13.9-1) ... 96s Selecting previously unselected package python3-pil.imagetk:amd64. 96s Preparing to unpack .../55-python3-pil.imagetk_11.3.0-1ubuntu2_amd64.deb ... 96s Unpacking python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 96s Selecting previously unselected package python3-contourpy. 96s Preparing to unpack .../56-python3-contourpy_1.3.1-2_amd64.deb ... 96s Unpacking python3-contourpy (1.3.1-2) ... 96s Selecting previously unselected package python3-cycler. 96s Preparing to unpack .../57-python3-cycler_0.12.1-2_all.deb ... 96s Unpacking python3-cycler (0.12.1-2) ... 96s Selecting previously unselected package python3-brotli. 96s Preparing to unpack .../58-python3-brotli_1.1.0-2build6_amd64.deb ... 96s Unpacking python3-brotli (1.1.0-2build6) ... 96s Selecting previously unselected package python3-platformdirs. 96s Preparing to unpack .../59-python3-platformdirs_4.3.7-1_all.deb ... 96s Unpacking python3-platformdirs (4.3.7-1) ... 96s Selecting previously unselected package python3-fs. 96s Preparing to unpack .../60-python3-fs_2.4.16-8ubuntu1_all.deb ... 96s Unpacking python3-fs (2.4.16-8ubuntu1) ... 96s Selecting previously unselected package python3-lxml:amd64. 96s Preparing to unpack .../61-python3-lxml_6.0.2-1_amd64.deb ... 96s Unpacking python3-lxml:amd64 (6.0.2-1) ... 96s Selecting previously unselected package python3-lz4. 96s Preparing to unpack .../62-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 96s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 96s Selecting previously unselected package python3-decorator. 96s Preparing to unpack .../63-python3-decorator_5.2.1-2_all.deb ... 96s Unpacking python3-decorator (5.2.1-2) ... 96s Selecting previously unselected package python3-scipy. 96s Preparing to unpack .../64-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 96s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 96s Selecting previously unselected package python3-mpmath. 96s Preparing to unpack .../65-python3-mpmath_1.3.0-2_all.deb ... 96s Unpacking python3-mpmath (1.3.0-2) ... 96s Selecting previously unselected package python3-sympy. 96s Preparing to unpack .../66-python3-sympy_1.14.0-2_all.deb ... 96s Unpacking python3-sympy (1.14.0-2) ... 97s Selecting previously unselected package python3-ufolib2. 97s Preparing to unpack .../67-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 97s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 97s Selecting previously unselected package python3-unicodedata2. 97s Preparing to unpack .../68-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 97s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 97s Selecting previously unselected package python3-zopfli. 97s Preparing to unpack .../69-python3-zopfli_0.4.0-1_amd64.deb ... 97s Unpacking python3-zopfli (0.4.0-1) ... 97s Selecting previously unselected package unicode-data. 97s Preparing to unpack .../70-unicode-data_16.0.0-1_all.deb ... 97s Unpacking unicode-data (16.0.0-1) ... 97s Selecting previously unselected package python3-fonttools. 97s Preparing to unpack .../71-python3-fonttools_4.57.0-2build1_amd64.deb ... 97s Unpacking python3-fonttools (4.57.0-2build1) ... 97s Selecting previously unselected package python3-kiwisolver. 97s Preparing to unpack .../72-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 97s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 97s Selecting previously unselected package python3-matplotlib. 97s Preparing to unpack .../73-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 97s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 97s Selecting previously unselected package python3-pytz. 97s Preparing to unpack .../74-python3-pytz_2025.2-4_all.deb ... 97s Unpacking python3-pytz (2025.2-4) ... 97s Selecting previously unselected package python3-tz. 97s Preparing to unpack .../75-python3-tz_2025.2-4_all.deb ... 97s Unpacking python3-tz (2025.2-4) ... 97s Selecting previously unselected package python3-fastjsonschema. 97s Preparing to unpack .../76-python3-fastjsonschema_2.21.1-1_all.deb ... 97s Unpacking python3-fastjsonschema (2.21.1-1) ... 97s Selecting previously unselected package python3-traitlets. 97s Preparing to unpack .../77-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 97s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 97s Selecting previously unselected package python3-jupyter-core. 97s Preparing to unpack .../78-python3-jupyter-core_5.7.2-5_all.deb ... 97s Unpacking python3-jupyter-core (5.7.2-5) ... 97s Selecting previously unselected package python3-nbformat. 97s Preparing to unpack .../79-python3-nbformat_5.9.1-1_all.deb ... 97s Unpacking python3-nbformat (5.9.1-1) ... 97s Selecting previously unselected package python3-tenacity. 97s Preparing to unpack .../80-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 97s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 97s Selecting previously unselected package python3-plotly. 97s Preparing to unpack .../81-python3-plotly_5.20.0+dfsg-1_all.deb ... 97s Unpacking python3-plotly (5.20.0+dfsg-1) ... 98s Selecting previously unselected package python3-pyaml-env. 98s Preparing to unpack .../82-python3-pyaml-env_1.2.1-2_all.deb ... 98s Unpacking python3-pyaml-env (1.2.1-2) ... 98s Selecting previously unselected package python3-rich-click. 98s Preparing to unpack .../83-python3-rich-click_1.6.0-2_all.deb ... 98s Unpacking python3-rich-click (1.6.0-2) ... 98s Selecting previously unselected package python3-networkx. 98s Preparing to unpack .../84-python3-networkx_3.2.1-4ubuntu1_all.deb ... 98s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 98s Selecting previously unselected package python3-colormath. 98s Preparing to unpack .../85-python3-colormath_3.0.0-4_all.deb ... 98s Unpacking python3-colormath (3.0.0-4) ... 98s Selecting previously unselected package python3-spectra. 98s Preparing to unpack .../86-python3-spectra_0.1.0-1_all.deb ... 98s Unpacking python3-spectra (0.1.0-1) ... 98s Selecting previously unselected package python3-lzstring. 98s Preparing to unpack .../87-python3-lzstring_1.0.4-3_all.deb ... 98s Unpacking python3-lzstring (1.0.4-3) ... 98s Selecting previously unselected package multiqc. 98s Preparing to unpack .../88-multiqc_1.21+dfsg-2_all.deb ... 98s Unpacking multiqc (1.21+dfsg-2) ... 98s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 98s Setting up liblcms2-2:amd64 (2.16-2) ... 98s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 98s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 98s Setting up python3-importlib-metadata (8.7.0-2) ... 98s Setting up libxrender1:amd64 (1:0.9.12-1) ... 98s Setting up python3-lz4 (4.4.4+dfsg-3) ... 98s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 98s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 98s Setting up fonts-lyx (2.4.4-2) ... 98s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 98s Setting up x11-common (1:7.7+24ubuntu1) ... 99s Setting up libdeflate0:amd64 (1.23-2) ... 99s Setting up libqhull-r8.0:amd64 (2020.2-7) ... 99s Setting up python3-pytz (2025.2-4) ... 99s Setting up libgomp1:amd64 (15.2.0-7ubuntu1) ... 99s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 99s Setting up python3-networkx (3.2.1-4ubuntu1) ... 100s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 100s Setting up python3-platformdirs (4.3.7-1) ... 100s Setting up python3-tz (2025.2-4) ... 100s Setting up python3-fs (2.4.16-8ubuntu1) ... 100s Setting up unicode-data (16.0.0-1) ... 100s Setting up python3-decorator (5.2.1-2) ... 100s Setting up libblas3:amd64 (3.12.1-7) ... 100s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 100s Setting up python3-pyaml-env (1.2.1-2) ... 100s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 100s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 100s Setting up libzopfli1 (1.0.3-3) ... 100s Setting up python3-humanfriendly (10.0-6) ... 100s Setting up python3-brotli (1.1.0-2build6) ... 100s Setting up python3-cycler (0.12.1-2) ... 100s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 100s Setting up fonts-dejavu-mono (2.37-8) ... 100s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 100s Setting up python3-numpy-dev:amd64 (1:2.3.4+ds-3ubuntu1) ... 100s Setting up python3-markdown (3.8.2-2) ... 100s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 100s Setting up fonts-dejavu-core (2.37-8) ... 100s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 100s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 100s Setting up libwebp7:amd64 (1.5.0-0.1) ... 100s Setting up python3-rich-click (1.6.0-2) ... 101s Setting up python3-fastjsonschema (2.21.1-1) ... 101s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 101s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 101s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 101s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 101s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 101s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 101s Setting up python3-mpmath (1.3.0-2) ... 101s Setting up python3-lzstring (1.0.4-3) ... 101s Setting up python3-humanize (4.12.1-1) ... 101s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 101s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 101s Setting up python3-coloredlogs (15.0.1-1) ... 101s Setting up python3-jupyter-core (5.7.2-5) ... 101s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 101s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 101s Setting up python3-sympy (1.14.0-2) ... 106s Setting up liblapack3:amd64 (3.12.1-7) ... 106s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 106s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 106s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 106s Setting up python3-nbformat (5.9.1-1) ... 106s Setting up python3-zopfli (0.4.0-1) ... 106s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 106s Setting up libjs-jquery-metadata (12-4) ... 106s Setting up libraqm0:amd64 (0.10.3-1) ... 106s Setting up python3-plotly (5.20.0+dfsg-1) ... 110s Setting up python3-numpy (1:2.3.4+ds-3ubuntu1) ... 111s Setting up python3-colormath (3.0.0-4) ... 111s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 111s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 111s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 111s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 111s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 111s :param sigma: :math:`\sigma` 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 111s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 111s logger.debug(" \- Target RGB space: %s", target_rgb) 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 111s logger.debug(" \- Target native illuminant: %s", target_illum) 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 111s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 111s logger.debug(" \* Applying transformation from %s to %s ", 111s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 111s logger.debug(" \* New values: %.3f, %.3f, %.3f", 111s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 111s logger.debug(" \- Original illuminant: %s", self.illuminant) 111s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 111s logger.debug(" \- Target illuminant: %s", target_illuminant) 111s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 111s logger.debug(" \* Applying transformation from %s to %s ", 111s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 111s Setting up python3-lxml:amd64 (6.0.2-1) ... 111s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 111s Setting up python3-contourpy (1.3.1-2) ... 111s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 111s Setting up libxft2:amd64 (2.3.6-1build1) ... 111s Setting up python3-scipy (1.15.3-1ubuntu1) ... 114s Setting up python3-spectra (0.1.0-1) ... 114s Setting up libtk8.6:amd64 (8.6.17-1) ... 114s Setting up python3.13-tk (3.13.9-1) ... 114s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 114s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 114s Setting up python3.14-tk (3.14.0-4) ... 114s Setting up blt (2.5.3+dfsg-8) ... 114s Setting up python3-tk:amd64 (3.13.9-1) ... 114s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 114s Setting up python3-fonttools (4.57.0-2build1) ... 115s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 115s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 116s Setting up multiqc (1.21+dfsg-2) ... 116s Processing triggers for libc-bin (2.42-2ubuntu2) ... 116s Processing triggers for man-db (2.13.1-1) ... 118s autopkgtest [03:49:41]: test environment configured for cross building 118s autopkgtest [03:49:41]: test run-unit-test: [----------------------- 119s 119s /// MultiQC 🔍 | v1.21 119s 119s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 119s 119s MultiQC aggregates results from bioinformatics analyses across many samples 119s into a single report. 119s It searches a given directory for analysis logs and compiles a HTML report. 119s It's a general use tool, perfect for summarising the output from numerous 119s bioinformatics tools. 119s To run, supply with one or more directory to scan for analysis results. For 119s example, to run in the current working directory, use 'multiqc .' 119s 119s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 119s │ --force -f Overwrite any existing reports │ 119s │ --config -c Specific config file to load, after those in MultiQC │ 119s │ dir / home dir / working dir. │ 119s │ (PATH) │ 119s │ --cl-config Specify MultiQC config YAML on the command line │ 119s │ (TEXT) │ 119s │ --filename -n Report filename. Use 'stdout' to print to standard │ 119s │ out. │ 119s │ (TEXT) │ 119s │ --outdir -o Create report in the specified output directory. │ 119s │ (TEXT) │ 119s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 119s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 119s │ --ignore-symlinks Ignore symlinked directories and files │ 119s │ --file-list -l Supply a file containing a list of file paths to be │ 119s │ searched, one per row │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 119s │ --module -m Use only this module. Can specify multiple times. │ 119s │ (MODULE NAME) │ 119s │ --exclude -e Do not use this module. Can specify multiple times. │ 119s │ (MODULE NAME) │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 119s │ --dirs -d Prepend directory to sample names │ 119s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 119s │ to take from start of path. │ 119s │ (INTEGER) │ 119s │ --fullnames -s Do not clean the sample names (leave as full file │ 119s │ name) │ 119s │ --fn_as_s_name Use the log filename as the sample name │ 119s │ --replace-names TSV file to rename sample names during report │ 119s │ generation │ 119s │ (PATH) │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 119s │ --title -i Report title. Printed as page header, used for │ 119s │ filename if not otherwise specified. │ 119s │ (TEXT) │ 119s │ --comment -b Custom comment, will be printed at the top of the │ 119s │ report. │ 119s │ (TEXT) │ 119s │ --template -t Report template to use. │ 119s │ (default|gathered|geo|highcharts|sections|simple) │ 119s │ --sample-names TSV file containing alternative sample names for │ 119s │ renaming buttons in the report │ 119s │ (PATH) │ 119s │ --sample-filters TSV file containing show/hide patterns for the report │ 119s │ (PATH) │ 119s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 119s │ --flat -fp Use only flat plots (static images) │ 119s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 119s │ --export -p Export plots as static images in addition to the report │ 119s │ --data-dir Force the parsed data directory to be created. │ 119s │ --no-data-dir Prevent the parsed data directory from being created. │ 119s │ --data-format -k Output parsed data in a different format. │ 119s │ (tsv|csv|json|yaml) │ 119s │ --zip-data-dir -z Compress the data directory. │ 119s │ --no-report Do not generate a report, only export data and plots │ 119s │ --pdf Creates PDF report with the 'simple' template. Requires │ 119s │ Pandoc to be installed. │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 119s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 119s │ --quiet -q Only show log warnings │ 119s │ --strict Don't catch exceptions, run additional code checks │ 119s │ to help development. │ 119s │ --development,--dev Development mode. Do not compress and minimise JS, │ 119s │ export uncompressed plot data │ 119s │ --require-logs Require all explicitly requested modules to have │ 119s │ log files. If not, MultiQC will exit with an error. │ 119s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 119s │ the report │ 119s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 119s │ MegaQC options are found │ 119s │ --no-ansi Disable coloured log output │ 119s │ --version Show the version and exit. │ 119s │ --help -h Show this message and exit. │ 119s ╰──────────────────────────────────────────────────────────────────────────────╯ 119s 119s See http://multiqc.info for more details. 119s 119s FIXME: The test data should be delivered in a separate binary package once freeze is over 119s 119s /// MultiQC 🔍 | v1.21 119s 119s | multiqc | MultiQC Version v1.32 now available! 119s | multiqc | Search path : /tmp/autopkgtest.Ia5VEb/autopkgtest_tmp/data 120s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 120s | feature_counts | Found 8 reports 120s | star | Found 8 reports 120s | cutadapt | Found 16 reports 120s | fastqc | Found 32 reports 120s | multiqc | Report : multiqc_report.html 120s | multiqc | Data : multiqc_data 120s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpew9py9yj/assets/js/packages/jszip.min.js' 120s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpew9py9yj/assets/js/packages/plotly-2.27.0.min.js' 120s | multiqc | MultiQC complete 120s -e 120s PASS 120s 121s autopkgtest [03:49:44]: test run-unit-test: -----------------------] 121s run-unit-test PASS 121s autopkgtest [03:49:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 121s autopkgtest [03:49:44]: @@@@@@@@@@@@@@@@@@@@ summary 121s run-unit-test PASS