0s autopkgtest [15:27:42]: starting date and time: 2025-10-29 15:27:42+0000 0s autopkgtest [15:27:42]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [15:27:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m8nphq4l/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pillow --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pillow/12.0.0-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-4.secgroup --name adt-resolute-i386-multiqc-20251029-152742-juju-7f2275-prod-proposed-migration-environment-2-0ac2c459-b404-4e74-ab7a-0d53684859a2 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-i386-multiqc-20251029-152742-juju-7f2275-prod-proposed-migration-environment-2-0ac2c459-b404-4e74-ab7a-0d53684859a2 from image adt/ubuntu-resolute-amd64-server-20251029.img (UUID 2345c089-5627-4919-bdd0-dff8360b43c0)... 32s autopkgtest [15:28:14]: testbed dpkg architecture: amd64 32s autopkgtest [15:28:14]: testbed apt version: 3.1.11 33s autopkgtest [15:28:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [15:28:15]: testbed release detected to be: None 34s autopkgtest [15:28:16]: updating testbed package index (apt update) 34s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 34s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 34s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 34s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 34s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3643 kB] 34s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB] 34s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 34s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [205 kB] 35s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [287 kB] 35s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [185 kB] 35s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5760 B] 35s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.6 kB] 35s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [4212 B] 35s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 35s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [1131 kB] 35s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [2559 kB] 35s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [71.9 kB] 35s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [19.9 kB] 35s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [47.4 kB] 35s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [2072 B] 36s Fetched 8354 kB in 1s (6915 kB/s) 36s Reading package lists... 37s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 37s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 37s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 37s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 37s Reading package lists... 37s Reading package lists... 37s Building dependency tree... 37s Reading state information... 38s Calculating upgrade... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s autopkgtest [15:28:20]: upgrading testbed (apt dist-upgrade and autopurge) 38s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Calculating upgrade... 38s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s Reading package lists... 39s Building dependency tree... 39s Reading state information... 39s Solving dependencies... 39s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 41s autopkgtest [15:28:23]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 41s autopkgtest [15:28:23]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 43s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 43s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 43s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 43s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 43s gpgv: issuer "tchet@debian.org" 43s gpgv: Can't check signature: No public key 43s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 44s autopkgtest [15:28:26]: testing package multiqc version 1.21+dfsg-2 44s autopkgtest [15:28:26]: build not needed 47s autopkgtest [15:28:29]: test run-unit-test: preparing testbed 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Solving dependencies... 47s The following NEW packages will be installed: 47s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 47s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 47s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 47s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 47s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 47s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 47s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 47s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 47s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 47s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 47s python3-fs python3-humanfriendly python3-humanize python3-importlib-metadata 47s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 47s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 47s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 47s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 47s python3-plotly python3-pyaml-env python3-pytz python3-rich-click 47s python3-scipy python3-spectra python3-sympy python3-tenacity python3-tk 47s python3-traitlets python3-tz python3-ufolib2 python3-unicodedata2 47s python3-zopfli python3.13-tk python3.14-tk tk8.6-blt2.5 unicode-data 47s x11-common 47s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 94.1 MB of archives. 47s After this operation, 480 MB of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 47s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 47s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 48s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 48s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 48s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 48s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 48s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 48s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 48s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 48s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 48s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 48s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 48s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 48s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 48s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 48s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 48s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-1 [171 kB] 48s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 48s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 48s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 48s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 48s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 48s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 48s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 48s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 48s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 48s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 48s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 48s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 48s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 48s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 48s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 48s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 48s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 48s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 48s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 48s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 48s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 48s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 48s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 48s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 48s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 48s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 48s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 48s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanize all 4.12.1-1 [58.3 kB] 48s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 48s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown all 3.8.2-2 [75.2 kB] 48s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 48s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 48s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 48s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 48s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 48s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 48s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 48s Get:57 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 48s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-1build2 [265 kB] 48s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 48s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 48s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 48s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 49s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 49s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 49s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 49s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 49s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 49s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 49s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 49s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 49s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 49s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 49s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 49s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.7-3build2 [63.0 kB] 49s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 49s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 50s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pytz all 2025.2-4 [32.3 kB] 50s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tz all 2025.2-4 [1746 B] 50s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 50s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 50s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 50s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 50s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 50s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 50s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyaml-env all 1.2.1-2 [9090 B] 50s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rich-click all 1.6.0-2 [18.0 kB] 50s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 50s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-colormath all 3.0.0-4 [36.6 kB] 50s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spectra all 0.1.0-1 [17.2 kB] 50s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lzstring all 1.0.4-3 [6262 B] 50s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 multiqc all 1.21+dfsg-2 [733 kB] 51s Fetched 94.1 MB in 3s (32.9 MB/s) 51s Selecting previously unselected package python3-numpy-dev:amd64. 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78531 files and directories currently installed.) 51s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 51s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 51s Selecting previously unselected package libblas3:amd64. 51s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 51s Unpacking libblas3:amd64 (3.12.1-6build1) ... 51s Selecting previously unselected package libgfortran5:amd64. 51s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package liblapack3:amd64. 51s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 51s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 51s Selecting previously unselected package python3-numpy. 51s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 51s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 51s Selecting previously unselected package libtcl8.6:amd64. 51s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 51s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 51s Selecting previously unselected package fonts-dejavu-mono. 51s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 51s Unpacking fonts-dejavu-mono (2.37-8) ... 51s Selecting previously unselected package fonts-dejavu-core. 51s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 51s Unpacking fonts-dejavu-core (2.37-8) ... 51s Selecting previously unselected package fontconfig-config. 51s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 51s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 51s Selecting previously unselected package libfontconfig1:amd64. 51s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 51s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 51s Selecting previously unselected package libxrender1:amd64. 51s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_amd64.deb ... 51s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 51s Selecting previously unselected package libxft2:amd64. 51s Preparing to unpack .../11-libxft2_2.3.6-1build1_amd64.deb ... 51s Unpacking libxft2:amd64 (2.3.6-1build1) ... 51s Selecting previously unselected package x11-common. 51s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 51s Unpacking x11-common (1:7.7+24ubuntu1) ... 51s Selecting previously unselected package libxss1:amd64. 51s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 51s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 51s Selecting previously unselected package libtk8.6:amd64. 51s Preparing to unpack .../14-libtk8.6_8.6.17-1_amd64.deb ... 51s Unpacking libtk8.6:amd64 (8.6.17-1) ... 51s Selecting previously unselected package tk8.6-blt2.5. 51s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 51s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 51s Selecting previously unselected package blt. 51s Preparing to unpack .../16-blt_2.5.3+dfsg-8_amd64.deb ... 51s Unpacking blt (2.5.3+dfsg-8) ... 51s Selecting previously unselected package fonts-glyphicons-halflings. 51s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 51s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 51s Selecting previously unselected package fonts-lyx. 51s Preparing to unpack .../18-fonts-lyx_2.4.4-1_all.deb ... 51s Unpacking fonts-lyx (2.4.4-1) ... 51s Selecting previously unselected package libdeflate0:amd64. 51s Preparing to unpack .../19-libdeflate0_1.23-2_amd64.deb ... 51s Unpacking libdeflate0:amd64 (1.23-2) ... 51s Selecting previously unselected package libgomp1:amd64. 51s Preparing to unpack .../20-libgomp1_15.2.0-5ubuntu1_amd64.deb ... 51s Unpacking libgomp1:amd64 (15.2.0-5ubuntu1) ... 51s Selecting previously unselected package libgraphite2-3:amd64. 51s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 51s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 51s Selecting previously unselected package libharfbuzz0b:amd64. 51s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_amd64.deb ... 51s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 51s Selecting previously unselected package libimagequant0:amd64. 51s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_amd64.deb ... 51s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 51s Selecting previously unselected package libjpeg-turbo8:amd64. 51s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 51s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 51s Selecting previously unselected package libjpeg8:amd64. 51s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_amd64.deb ... 51s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 51s Selecting previously unselected package libjs-bootstrap. 51s Preparing to unpack .../26-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 51s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 51s Selecting previously unselected package libjs-jquery. 51s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 51s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 51s Selecting previously unselected package libjs-jquery-metadata. 51s Preparing to unpack .../28-libjs-jquery-metadata_12-4_all.deb ... 51s Unpacking libjs-jquery-metadata (12-4) ... 51s Selecting previously unselected package libjs-jquery-tablesorter. 51s Preparing to unpack .../29-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 51s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 51s Selecting previously unselected package libjs-jquery-ui. 51s Preparing to unpack .../30-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 51s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 51s Selecting previously unselected package liblcms2-2:amd64. 51s Preparing to unpack .../31-liblcms2-2_2.16-2_amd64.deb ... 51s Unpacking liblcms2-2:amd64 (2.16-2) ... 51s Selecting previously unselected package liblerc4:amd64. 51s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 51s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 51s Selecting previously unselected package libqhull-r8.0:amd64. 51s Preparing to unpack .../33-libqhull-r8.0_2020.2-6build1_amd64.deb ... 51s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 51s Selecting previously unselected package libraqm0:amd64. 51s Preparing to unpack .../34-libraqm0_0.10.3-1_amd64.deb ... 51s Unpacking libraqm0:amd64 (0.10.3-1) ... 51s Selecting previously unselected package libsharpyuv0:amd64. 51s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_amd64.deb ... 51s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libjbig0:amd64. 51s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 51s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 51s Selecting previously unselected package libwebp7:amd64. 51s Preparing to unpack .../37-libwebp7_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libtiff6:amd64. 51s Preparing to unpack .../38-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 51s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 51s Selecting previously unselected package libwebpdemux2:amd64. 51s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libwebpmux3:amd64. 51s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_amd64.deb ... 51s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 51s Selecting previously unselected package libxslt1.1:amd64. 51s Preparing to unpack .../41-libxslt1.1_1.1.43-0.3_amd64.deb ... 51s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 51s Selecting previously unselected package libzopfli1. 51s Preparing to unpack .../42-libzopfli1_1.0.3-3_amd64.deb ... 51s Unpacking libzopfli1 (1.0.3-3) ... 51s Selecting previously unselected package python3-click. 51s Preparing to unpack .../43-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 51s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 51s Selecting previously unselected package python3-humanfriendly. 51s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 51s Unpacking python3-humanfriendly (10.0-6) ... 51s Selecting previously unselected package python3-coloredlogs. 51s Preparing to unpack .../45-python3-coloredlogs_15.0.1-1_all.deb ... 51s Unpacking python3-coloredlogs 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libopenjp2-7:amd64. 52s Preparing to unpack .../51-libopenjp2-7_2.5.3-2.1_amd64.deb ... 52s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 52s Selecting previously unselected package python3-pil:amd64. 52s Preparing to unpack .../52-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 52s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 52s Selecting previously unselected package python3.14-tk. 52s Preparing to unpack .../53-python3.14-tk_3.14.0-4_amd64.deb ... 52s Unpacking python3.14-tk (3.14.0-4) ... 52s Selecting previously unselected package python3.13-tk. 52s Preparing to unpack .../54-python3.13-tk_3.13.9-1_amd64.deb ... 52s Unpacking python3.13-tk (3.13.9-1) ... 52s Selecting previously unselected package python3-tk:amd64. 52s Preparing to unpack .../55-python3-tk_3.13.9-1_amd64.deb ... 52s Unpacking python3-tk:amd64 (3.13.9-1) ... 52s Selecting previously unselected package python3-pil.imagetk:amd64. 52s Preparing to unpack .../56-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 52s 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python3-lxml:amd64. 52s Preparing to unpack .../62-python3-lxml_6.0.1-1build1_amd64.deb ... 52s Unpacking python3-lxml:amd64 (6.0.1-1build1) ... 52s Selecting previously unselected package python3-lz4. 52s Preparing to unpack .../63-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 52s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 52s Selecting previously unselected package python3-decorator. 52s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 52s Unpacking python3-decorator (5.2.1-2) ... 52s Selecting previously unselected package python3-scipy. 52s Preparing to unpack .../65-python3-scipy_1.15.3-1ubuntu1_amd64.deb ... 52s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 52s Selecting previously unselected package python3-mpmath. 52s Preparing to unpack .../66-python3-mpmath_1.3.0-1_all.deb ... 52s Unpacking python3-mpmath (1.3.0-1) ... 52s Selecting previously unselected package python3-sympy. 52s Preparing to unpack .../67-python3-sympy_1.13.3-5_all.deb ... 52s Unpacking python3-sympy (1.13.3-5) ... 52s Selecting previously unselected package python3-ufolib2. 52s Preparing to unpack .../68-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 52s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 52s Selecting previously unselected package python3-unicodedata2. 52s Preparing to unpack .../69-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 52s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 52s Selecting previously unselected package python3-zopfli. 52s Preparing to unpack .../70-python3-zopfli_0.2.3.post1-1_amd64.deb ... 52s Unpacking python3-zopfli (0.2.3.post1-1) ... 52s Selecting previously unselected package unicode-data. 52s Preparing to unpack .../71-unicode-data_16.0.0-1_all.deb ... 52s Unpacking unicode-data (16.0.0-1) ... 52s Selecting previously unselected package python3-fonttools. 52s Preparing to unpack .../72-python3-fonttools_4.57.0-2build1_amd64.deb ... 52s Unpacking python3-fonttools (4.57.0-2build1) ... 52s Selecting previously unselected package python3-kiwisolver. 52s Preparing to unpack .../73-python3-kiwisolver_1.4.7-3build2_amd64.deb ... 52s Unpacking python3-kiwisolver (1.4.7-3build2) ... 52s Selecting previously unselected package python3-packaging. 52s Preparing to unpack .../74-python3-packaging_25.0-1_all.deb ... 52s Unpacking python3-packaging (25.0-1) ... 52s Selecting previously unselected package python3-matplotlib. 52s Preparing to unpack .../75-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 52s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 52s Selecting previously unselected package python3-pytz. 52s Preparing to unpack .../76-python3-pytz_2025.2-4_all.deb ... 52s Unpacking python3-pytz (2025.2-4) ... 52s Selecting previously unselected package python3-tz. 52s Preparing to unpack .../77-python3-tz_2025.2-4_all.deb ... 52s Unpacking python3-tz (2025.2-4) ... 52s Selecting previously unselected package python3-fastjsonschema. 53s Preparing to unpack .../78-python3-fastjsonschema_2.21.1-1_all.deb ... 53s Unpacking python3-fastjsonschema (2.21.1-1) ... 53s Selecting previously unselected package python3-traitlets. 53s Preparing to unpack .../79-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 53s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 53s Selecting previously unselected package python3-jupyter-core. 53s Preparing to unpack .../80-python3-jupyter-core_5.7.2-5_all.deb ... 53s Unpacking python3-jupyter-core (5.7.2-5) ... 53s Selecting previously unselected package python3-nbformat. 53s Preparing to unpack .../81-python3-nbformat_5.9.1-1_all.deb ... 53s Unpacking python3-nbformat (5.9.1-1) ... 53s Selecting previously unselected package python3-tenacity. 53s Preparing to unpack .../82-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 53s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 53s Selecting previously unselected package python3-plotly. 53s Preparing to unpack .../83-python3-plotly_5.20.0+dfsg-1_all.deb ... 53s Unpacking python3-plotly (5.20.0+dfsg-1) ... 53s Selecting previously unselected package python3-pyaml-env. 53s Preparing to unpack .../84-python3-pyaml-env_1.2.1-2_all.deb ... 53s Unpacking python3-pyaml-env (1.2.1-2) ... 53s Selecting previously unselected package python3-rich-click. 53s Preparing to unpack .../85-python3-rich-click_1.6.0-2_all.deb ... 53s Unpacking python3-rich-click (1.6.0-2) ... 53s Selecting previously unselected package python3-networkx. 53s Preparing to unpack .../86-python3-networkx_3.2.1-4ubuntu1_all.deb ... 53s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 53s Selecting previously unselected package python3-colormath. 53s Preparing to unpack .../87-python3-colormath_3.0.0-4_all.deb ... 53s Unpacking python3-colormath (3.0.0-4) ... 53s Selecting previously unselected package python3-spectra. 53s Preparing to unpack .../88-python3-spectra_0.1.0-1_all.deb ... 53s Unpacking python3-spectra (0.1.0-1) ... 53s Selecting previously unselected package python3-lzstring. 53s Preparing to unpack .../89-python3-lzstring_1.0.4-3_all.deb ... 53s Unpacking python3-lzstring (1.0.4-3) ... 53s Selecting previously unselected package multiqc. 53s Preparing to unpack .../90-multiqc_1.21+dfsg-2_all.deb ... 53s Unpacking multiqc (1.21+dfsg-2) ... 53s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 53s Setting up liblcms2-2:amd64 (2.16-2) ... 53s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 53s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 53s Setting up python3-importlib-metadata (8.7.0-2) ... 53s Setting up libxrender1:amd64 (1:0.9.12-1) ... 53s Setting up python3-lz4 (4.4.4+dfsg-3) ... 53s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 53s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 53s Setting up fonts-lyx (2.4.4-1) ... 53s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 54s Setting up x11-common (1:7.7+24ubuntu1) ... 54s Setting up libdeflate0:amd64 (1.23-2) ... 54s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 54s Setting up python3-pytz (2025.2-4) ... 54s Setting up libgomp1:amd64 (15.2.0-5ubuntu1) ... 54s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 54s Setting up python3-networkx (3.2.1-4ubuntu1) ... 55s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 55s Setting up python3-platformdirs (4.3.7-1) ... 55s Setting up python3-tz (2025.2-4) ... 55s Setting up python3-fs (2.4.16-7) ... 55s Setting up unicode-data (16.0.0-1) ... 55s Setting up python3-decorator (5.2.1-2) ... 55s Setting up libblas3:amd64 (3.12.1-6build1) ... 55s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 55s Setting up python3-pyaml-env (1.2.1-2) ... 55s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 55s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 55s Setting up python3-packaging (25.0-1) ... 55s Setting up libzopfli1 (1.0.3-3) ... 55s Setting up python3-humanfriendly (10.0-6) ... 55s Setting up python3-brotli (1.1.0-2build6) ... 55s Setting up python3-cycler (0.12.1-2) ... 55s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 55s Setting up fonts-dejavu-mono (2.37-8) ... 55s Setting up python3-kiwisolver (1.4.7-3build2) ... 55s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 55s Setting up python3-markdown (3.8.2-2) ... 55s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 55s Setting up fonts-dejavu-core (2.37-8) ... 55s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 55s Setting up libgfortran5:amd64 (15.2.0-5ubuntu1) ... 55s Setting up libwebp7:amd64 (1.5.0-0.1) ... 55s Setting up python3-rich-click (1.6.0-2) ... 55s Setting up python3-fastjsonschema (2.21.1-1) ... 55s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 56s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 56s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 56s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 56s Setting up python3-dateutil (2.9.0-4) ... 56s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 56s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 56s Setting up python3-mpmath (1.3.0-1) ... 56s Setting up python3-lzstring (1.0.4-3) ... 56s Setting up python3-humanize (4.12.1-1) ... 56s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 56s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 56s Setting up python3-coloredlogs (15.0.1-1) ... 56s Setting up python3-jupyter-core (5.7.2-5) ... 56s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 56s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 56s Setting up python3-sympy (1.13.3-5) ... 60s Setting up liblapack3:amd64 (3.12.1-6build1) ... 60s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 60s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 60s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 60s Setting up python3-nbformat (5.9.1-1) ... 60s Setting up python3-zopfli (0.2.3.post1-1) ... 60s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 60s Setting up libjs-jquery-metadata (12-4) ... 60s Setting up libraqm0:amd64 (0.10.3-1) ... 60s Setting up python3-plotly (5.20.0+dfsg-1) ... 63s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 64s Setting up python3-colormath (3.0.0-4) ... 64s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 64s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 64s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 64s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 64s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 64s :param sigma: :math:`\sigma` 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 64s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 64s logger.debug(" \- Target RGB space: %s", target_rgb) 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 64s logger.debug(" \- Target native illuminant: %s", target_illum) 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 64s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 64s logger.debug(" \* Applying transformation from %s to %s ", 64s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 64s logger.debug(" \* New values: %.3f, %.3f, %.3f", 64s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 64s logger.debug(" \- Original illuminant: %s", self.illuminant) 64s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 64s logger.debug(" \- Target illuminant: %s", target_illuminant) 64s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 64s logger.debug(" \* Applying transformation from %s to %s ", 64s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 64s Setting up python3-lxml:amd64 (6.0.1-1build1) ... 64s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 64s Setting up python3-contourpy (1.3.1-1build2) ... 64s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 64s Setting up libxft2:amd64 (2.3.6-1build1) ... 64s Setting up python3-scipy (1.15.3-1ubuntu1) ... 66s Setting up python3-spectra (0.1.0-1) ... 66s Setting up libtk8.6:amd64 (8.6.17-1) ... 66s Setting up python3.13-tk (3.13.9-1) ... 66s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 67s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 67s Setting up python3.14-tk (3.14.0-4) ... 67s Setting up blt (2.5.3+dfsg-8) ... 67s Setting up python3-tk:amd64 (3.13.9-1) ... 67s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 67s Setting up python3-fonttools (4.57.0-2build1) ... 67s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 67s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 68s Setting up multiqc (1.21+dfsg-2) ... 69s Processing triggers for libc-bin (2.42-0ubuntu3) ... 69s Processing triggers for man-db (2.13.1-1) ... 70s autopkgtest [15:28:52]: test environment configured for cross building 70s autopkgtest [15:28:52]: test run-unit-test: [----------------------- 71s 71s /// MultiQC 🎃 | v1.21 71s 71s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 71s 71s MultiQC aggregates results from bioinformatics analyses across many samples 71s into a single report. 71s It searches a given directory for analysis logs and compiles a HTML report. 71s It's a general use tool, perfect for summarising the output from numerous 71s bioinformatics tools. 71s To run, supply with one or more directory to scan for analysis results. For 71s example, to run in the current working directory, use 'multiqc .' 71s 71s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 71s │ --force -f Overwrite any existing reports │ 71s │ --config -c Specific config file to load, after those in MultiQC │ 71s │ dir / home dir / working dir. │ 71s │ (PATH) │ 71s │ --cl-config Specify MultiQC config YAML on the command line │ 71s │ (TEXT) │ 71s │ --filename -n Report filename. Use 'stdout' to print to standard │ 71s │ out. │ 71s │ (TEXT) │ 71s │ --outdir -o Create report in the specified output directory. │ 71s │ (TEXT) │ 71s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 71s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 71s │ --ignore-symlinks Ignore symlinked directories and files │ 71s │ --file-list -l Supply a file containing a list of file paths to be │ 71s │ searched, one per row │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 71s │ --module -m Use only this module. Can specify multiple times. │ 71s │ (MODULE NAME) │ 71s │ --exclude -e Do not use this module. Can specify multiple times. │ 71s │ (MODULE NAME) │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 71s │ --dirs -d Prepend directory to sample names │ 71s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 71s │ to take from start of path. │ 71s │ (INTEGER) │ 71s │ --fullnames -s Do not clean the sample names (leave as full file │ 71s │ name) │ 71s │ --fn_as_s_name Use the log filename as the sample name │ 71s │ --replace-names TSV file to rename sample names during report │ 71s │ generation │ 71s │ (PATH) │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 71s │ --title -i Report title. Printed as page header, used for │ 71s │ filename if not otherwise specified. │ 71s │ (TEXT) │ 71s │ --comment -b Custom comment, will be printed at the top of the │ 71s │ report. │ 71s │ (TEXT) │ 71s │ --template -t Report template to use. │ 71s │ (default|gathered|geo|highcharts|sections|simple) │ 71s │ --sample-names TSV file containing alternative sample names for │ 71s │ renaming buttons in the report │ 71s │ (PATH) │ 71s │ --sample-filters TSV file containing show/hide patterns for the report │ 71s │ (PATH) │ 71s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 71s │ --flat -fp Use only flat plots (static images) │ 71s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 71s │ --export -p Export plots as static images in addition to the report │ 71s │ --data-dir Force the parsed data directory to be created. │ 71s │ --no-data-dir Prevent the parsed data directory from being created. │ 71s │ --data-format -k Output parsed data in a different format. │ 71s │ (tsv|csv|json|yaml) │ 71s │ --zip-data-dir -z Compress the data directory. │ 71s │ --no-report Do not generate a report, only export data and plots │ 71s │ --pdf Creates PDF report with the 'simple' template. Requires │ 71s │ Pandoc to be installed. │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 71s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 71s │ --quiet -q Only show log warnings │ 71s │ --strict Don't catch exceptions, run additional code checks │ 71s │ to help development. │ 71s │ --development,--dev Development mode. Do not compress and minimise JS, │ 71s │ export uncompressed plot data │ 71s │ --require-logs Require all explicitly requested modules to have │ 71s │ log files. If not, MultiQC will exit with an error. │ 71s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 71s │ the report │ 71s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 71s │ MegaQC options are found │ 71s │ --no-ansi Disable coloured log output │ 71s │ --version Show the version and exit. │ 71s │ --help -h Show this message and exit. │ 71s ╰──────────────────────────────────────────────────────────────────────────────╯ 71s 71s See http://multiqc.info for more details. 71s 71s FIXME: The test data should be delivered in a separate binary package once freeze is over 72s 72s /// MultiQC 🔍 | v1.21 72s 72s | multiqc | MultiQC Version v1.32 now available! 72s | multiqc | Search path : /tmp/autopkgtest.EgsPxT/autopkgtest_tmp/data 72s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 72s | feature_counts | Found 8 reports 72s | star | Found 8 reports 72s | cutadapt | Found 16 reports 72s | fastqc | Found 32 reports 72s | multiqc | Report : multiqc_report.html 72s | multiqc | Data : multiqc_data 72s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpbc_y1g3i/assets/js/packages/jszip.min.js' 72s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpbc_y1g3i/assets/js/packages/plotly-2.27.0.min.js' 72s | multiqc | MultiQC complete 72s -e 72s PASS 72s 73s autopkgtest [15:28:55]: test run-unit-test: -----------------------] 73s run-unit-test PASS 73s autopkgtest [15:28:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 73s autopkgtest [15:28:55]: @@@@@@@@@@@@@@@@@@@@ summary 73s run-unit-test PASS