0s autopkgtest [06:22:37]: starting date and time: 2026-01-23 06:22:37+0000 0s autopkgtest [06:22:37]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [06:22:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.24yh9e92/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-1.secgroup --name adt-resolute-i386-mcaller-20260123-062236-juju-7f2275-prod-proposed-migration-environment-2-3b739a27-e346-46f5-b618-be1bd81be479 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 6s Creating nova instance adt-resolute-i386-mcaller-20260123-062236-juju-7f2275-prod-proposed-migration-environment-2-3b739a27-e346-46f5-b618-be1bd81be479 from image adt/ubuntu-resolute-amd64-server-20260123.img (UUID 789dbc23-4f1b-4e7c-bcab-98e6eebf04f2)... 86s autopkgtest [06:24:03]: testbed dpkg architecture: amd64 87s autopkgtest [06:24:04]: testbed apt version: 3.1.13 87s autopkgtest [06:24:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s autopkgtest [06:24:04]: testbed release detected to be: None 88s autopkgtest [06:24:05]: updating testbed package index (apt update) 88s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 88s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 88s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 88s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 88s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.6 kB] 88s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1105 kB] 88s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [106 kB] 88s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [127 kB] 88s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3384 B] 89s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 89s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 89s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 89s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [424 kB] 89s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [987 kB] 89s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.3 kB] 89s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 89s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.6 kB] 89s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [564 B] 89s Fetched 3055 kB in 1s (3925 kB/s) 90s Reading package lists... 90s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 92s The following packages were automatically installed and are no longer required: 92s python3.13 python3.13-minimal 92s Use 'sudo apt autoremove' to remove them. 92s The following NEW packages will be installed: 92s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 92s The following packages will be upgraded: 92s libpython3-stdlib python3 python3-gdbm python3-minimal 92s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 6769 kB of archives. 92s After this operation, 24.5 MB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 92s dpkg-preconfigure: unable to re-open stdin: No such file or directory 93s Fetched 6769 kB in 1s (8940 kB/s) 93s Selecting previously unselected package libpython3.14-minimal:amd64. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124176 files and directories currently installed.) 93s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 93s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 93s Selecting previously unselected package python3.14-minimal. 93s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 93s Unpacking python3.14-minimal (3.14.2-1) ... 93s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 93s Setting up python3.14-minimal (3.14.2-1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 93s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 93s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 94s Setting up python3-minimal (3.14.2-1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 94s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 94s running python pre-rtupdate hooks for python3.14... 94s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 94s Selecting previously unselected package libpython3.14-stdlib:amd64. 94s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ... 94s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 94s Selecting previously unselected package python3.14. 94s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ... 94s Unpacking python3.14 (3.14.2-1) ... 94s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 94s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 94s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 94s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 94s Setting up python3.14 (3.14.2-1) ... 95s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 95s Setting up python3-gdbm (3.14.2-1) ... 95s Setting up python3 (3.14.2-1) ... 95s running python rtupdate hooks for python3.14... 95s running python post-rtupdate hooks for python3.14... 95s Processing triggers for man-db (2.13.1-1) ... 95s Processing triggers for systemd (259-1ubuntu2) ... 95s autopkgtest [06:24:12]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Calculating upgrade... 96s The following packages were automatically installed and are no longer required: 96s python3.13 python3.13-minimal 96s Use 'sudo apt autoremove' to remove them. 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Solving dependencies... 96s The following packages will be REMOVED: 96s python3.13* python3.13-minimal* 96s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 96s After this operation, 7860 kB disk space will be freed. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124948 files and directories currently installed.) 96s Removing python3.13 (3.13.11-1) ... 96s Removing python3.13-minimal (3.13.11-1) ... 97s Processing triggers for man-db (2.13.1-1) ... 97s Processing triggers for systemd (259-1ubuntu2) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124921 files and directories currently installed.) 97s Purging configuration files for python3.13-minimal (3.13.11-1) ... 99s autopkgtest [06:24:16]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 99s autopkgtest [06:24:16]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 101s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (dsc) [2234 B] 101s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (tar) [6613 kB] 101s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (diff) [7588 B] 101s gpgv: Signature made Tue Dec 16 20:01:30 2025 UTC 101s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 101s gpgv: Can't check signature: No public key 101s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3build1.dsc: no acceptable signature found 101s autopkgtest [06:24:18]: testing package mcaller version 1.0.3+git20210624.b415090-3build1 101s autopkgtest [06:24:18]: build not needed 102s autopkgtest [06:24:19]: test run-unit-test: preparing testbed 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Solving dependencies... 103s The following NEW packages will be installed: 103s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 103s fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 103s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 103s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 103s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 103s liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 103s libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 103s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 103s libxss1 libzopfli1 mcaller python-matplotlib-data python3-biopython 103s python3-brotli python3-cairo python3-charset-normalizer python3-contourpy 103s python3-cycler python3-decorator python3-fonttools python3-freetype 103s python3-h5py python3-h5py-serial python3-joblib python3-kiwisolver 103s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 103s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 103s python3-pil.imagetk python3-pysam python3-pytz python3-reportlab 103s python3-rlpycairo python3-scipy python3-seaborn python3-sklearn 103s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 103s python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 103s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 103s xfonts-encodings xfonts-utils xml-core 103s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 121 MB of archives. 103s After this operation, 569 MB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 103s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 103s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 103s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 103s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 103s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 103s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontenc1 amd64 1:1.1.8-1build2 [14.1 kB] 103s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 103s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 103s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 xfonts-utils amd64 1:7.7+7build1 [97.1 kB] 103s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 104s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 104s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 104s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 104s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 104s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 104s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 104s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 104s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 104s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 104s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 104s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 104s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 104s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 104s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 104s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 104s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 104s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 104s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2build1 [108 kB] 104s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 104s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 104s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 104s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 104s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 104s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 104s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 104s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 104s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 104s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 104s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 104s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 104s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 104s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 104s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 104s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 104s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 104s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 104s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 104s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 104s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 104s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn-lib amd64 1.7.2+dfsg-4 [4339 kB] 104s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.5.2-1 [210 kB] 104s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 104s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-3 [18.8 MB] 105s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-threadpoolctl all 3.1.0-1build1 [20.7 kB] 105s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sklearn all 1.7.2+dfsg-4 [2616 kB] 105s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 105s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 105s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-charset-normalizer amd64 3.4.4-2 [173 kB] 105s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 105s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 105s Get:63 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-tk amd64 3.14.2-1 [11.2 kB] 105s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 105s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 105s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 105s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-cairo amd64 1.27.0-2build1 [140 kB] 105s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-freetype all 2.5.1-2 [92.2 kB] 105s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rlpycairo all 0.3.0-4 [9332 B] 105s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-reportlab all 4.4.9-1 [1149 kB] 105s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 105s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19build1 [20.3 kB] 105s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 w3c-sgml-lib all 1.3-3build1 [278 kB] 105s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biopython amd64 1.86+dfsg-1 [1682 kB] 105s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 105s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 105s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 105s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 105s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 105s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 105s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 105s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 105s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 105s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 105s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 105s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 106s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 106s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 106s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 106s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 106s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 107s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 107s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-seaborn all 0.13.2-6 [225 kB] 107s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pysam amd64 0.23.3+ds-2 [4536 kB] 107s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 mcaller all 1.0.3+git20210624.b415090-3build1 [19.5 kB] 107s Fetched 121 MB in 4s (28.8 MB/s) 107s Selecting previously unselected package python3-numpy-dev:amd64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124923 files and directories currently installed.) 107s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 107s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 107s Selecting previously unselected package libblas3:amd64. 107s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_amd64.deb ... 107s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 107s Selecting previously unselected package libgfortran5:amd64. 107s Preparing to unpack .../02-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 107s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 107s Selecting previously unselected package liblapack3:amd64. 107s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 107s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 107s Selecting previously unselected package python3-numpy. 107s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 107s Unpacking python3-numpy (1:2.3.5+ds-3) ... 108s Selecting previously unselected package fonts-dejavu-mono. 108s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 108s Unpacking fonts-dejavu-mono (2.37-8build1) ... 108s Selecting previously unselected package fonts-dejavu-core. 108s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 108s Unpacking fonts-dejavu-core (2.37-8build1) ... 108s Selecting previously unselected package libfontenc1:amd64. 108s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build2_amd64.deb ... 108s Unpacking libfontenc1:amd64 (1:1.1.8-1build2) ... 108s Selecting previously unselected package x11-common. 108s Preparing to unpack .../08-x11-common_1%3a7.7+24ubuntu1_all.deb ... 108s Unpacking x11-common (1:7.7+24ubuntu1) ... 108s Selecting previously unselected package xfonts-encodings. 108s Preparing to unpack .../09-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 108s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 108s Selecting previously unselected package xfonts-utils. 108s Preparing to unpack .../10-xfonts-utils_1%3a7.7+7build1_amd64.deb ... 108s Unpacking xfonts-utils (1:7.7+7build1) ... 108s Selecting previously unselected package fonts-urw-base35. 108s Preparing to unpack .../11-fonts-urw-base35_20200910-8build1_all.deb ... 108s Unpacking fonts-urw-base35 (20200910-8build1) ... 108s Selecting previously unselected package fontconfig-config. 108s Preparing to unpack .../12-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 108s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 108s Selecting previously unselected package fonts-dejavu-extra. 108s Preparing to unpack .../13-fonts-dejavu-extra_2.37-8build1_all.deb ... 108s Unpacking fonts-dejavu-extra (2.37-8build1) ... 108s Selecting previously unselected package fonts-lyx. 108s Preparing to unpack .../14-fonts-lyx_2.5.0~RC2-3_all.deb ... 108s Unpacking fonts-lyx (2.5.0~RC2-3) ... 108s Selecting previously unselected package libaec0:amd64. 108s Preparing to unpack .../15-libaec0_1.1.4-2_amd64.deb ... 108s Unpacking libaec0:amd64 (1.1.4-2) ... 108s Selecting previously unselected package libfontconfig1:amd64. 108s Preparing to unpack .../16-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 108s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 108s Selecting previously unselected package libpixman-1-0:amd64. 108s Preparing to unpack .../17-libpixman-1-0_0.46.4-1_amd64.deb ... 108s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 108s Selecting previously unselected package libxcb-render0:amd64. 108s Preparing to unpack .../18-libxcb-render0_1.17.0-2build1_amd64.deb ... 108s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 108s Selecting previously unselected package libxcb-shm0:amd64. 108s Preparing to unpack .../19-libxcb-shm0_1.17.0-2build1_amd64.deb ... 108s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 108s Selecting previously unselected package libxrender1:amd64. 108s Preparing to unpack .../20-libxrender1_1%3a0.9.12-1_amd64.deb ... 108s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 108s Selecting previously unselected package libcairo2:amd64. 108s Preparing to unpack .../21-libcairo2_1.18.4-3_amd64.deb ... 108s Unpacking libcairo2:amd64 (1.18.4-3) ... 108s Selecting previously unselected package libdeflate0:amd64. 108s Preparing to unpack .../22-libdeflate0_1.23-2_amd64.deb ... 108s Unpacking libdeflate0:amd64 (1.23-2) ... 108s Selecting previously unselected package libgomp1:amd64. 108s Preparing to unpack .../23-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 108s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 108s Selecting previously unselected package libgraphite2-3:amd64. 108s Preparing to unpack .../24-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 108s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 108s Selecting previously unselected package libharfbuzz0b:amd64. 108s Preparing to unpack .../25-libharfbuzz0b_12.3.0-4_amd64.deb ... 108s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 108s Selecting previously unselected package libsz2:amd64. 108s Preparing to unpack .../26-libsz2_1.1.4-2_amd64.deb ... 108s Unpacking libsz2:amd64 (1.1.4-2) ... 108s Selecting previously unselected package libhdf5-310:amd64. 108s Preparing to unpack .../27-libhdf5-310_1.14.5+repack-4_amd64.deb ... 108s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 108s Selecting previously unselected package libhdf5-hl-310:amd64. 108s Preparing to unpack .../28-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 108s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 108s Selecting previously unselected package libhtscodecs2:amd64. 108s Preparing to unpack .../29-libhtscodecs2_1.6.1-2build1_amd64.deb ... 108s Unpacking libhtscodecs2:amd64 (1.6.1-2build1) ... 108s Selecting previously unselected package libhts3t64:amd64. 108s Preparing to unpack .../30-libhts3t64_1.22.1+ds2-1_amd64.deb ... 108s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 108s Selecting previously unselected package libimagequant0:amd64. 108s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_amd64.deb ... 108s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 108s Selecting previously unselected package libjpeg-turbo8:amd64. 108s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 108s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 108s Selecting previously unselected package libjpeg8:amd64. 108s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_amd64.deb ... 108s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 108s Selecting previously unselected package liblcms2-2:amd64. 108s Preparing to unpack .../34-liblcms2-2_2.17-1_amd64.deb ... 108s Unpacking liblcms2-2:amd64 (2.17-1) ... 108s Selecting previously unselected package liblerc4:amd64. 108s Preparing to unpack .../35-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 108s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 108s Selecting previously unselected package liblzf1:amd64. 108s Preparing to unpack .../36-liblzf1_3.6-4build1_amd64.deb ... 108s Unpacking liblzf1:amd64 (3.6-4build1) ... 108s Selecting previously unselected package libqhull-r8.0:amd64. 108s Preparing to unpack .../37-libqhull-r8.0_2020.2-8_amd64.deb ... 108s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 108s Selecting previously unselected package libraqm0:amd64. 108s Preparing to unpack .../38-libraqm0_0.10.3-1_amd64.deb ... 108s Unpacking libraqm0:amd64 (0.10.3-1) ... 108s Selecting previously unselected package libsharpyuv0:amd64. 108s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 108s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 108s Selecting previously unselected package libtcl8.6:amd64. 108s Preparing to unpack .../40-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 108s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 108s Selecting previously unselected package libjbig0:amd64. 108s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 108s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 108s Selecting previously unselected package libwebp7:amd64. 108s Preparing to unpack .../42-libwebp7_1.5.0-0.1build1_amd64.deb ... 108s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 108s Selecting previously unselected package libtiff6:amd64. 108s Preparing to unpack .../43-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 108s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 108s Selecting previously unselected package libxft2:amd64. 108s Preparing to unpack .../44-libxft2_2.3.6-1build2_amd64.deb ... 108s Unpacking libxft2:amd64 (2.3.6-1build2) ... 108s Selecting previously unselected package libxss1:amd64. 108s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_amd64.deb ... 108s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 108s Selecting previously unselected package libtk8.6:amd64. 108s Preparing to unpack .../46-libtk8.6_8.6.17-1_amd64.deb ... 108s Unpacking libtk8.6:amd64 (8.6.17-1) ... 108s Selecting previously unselected package libwebpdemux2:amd64. 108s Preparing to unpack .../47-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 108s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 108s Selecting previously unselected package libwebpmux3:amd64. 108s Preparing to unpack .../48-libwebpmux3_1.5.0-0.1build1_amd64.deb ... 108s Unpacking libwebpmux3:amd64 (1.5.0-0.1build1) ... 108s Selecting previously unselected package libxslt1.1:amd64. 108s Preparing to unpack .../49-libxslt1.1_1.1.43-0.3_amd64.deb ... 108s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 108s Selecting previously unselected package libzopfli1. 108s Preparing to unpack .../50-libzopfli1_1.0.3-3_amd64.deb ... 108s Unpacking libzopfli1 (1.0.3-3) ... 109s Selecting previously unselected package python3-sklearn-lib:amd64. 109s Preparing to unpack .../51-python3-sklearn-lib_1.7.2+dfsg-4_amd64.deb ... 109s Unpacking python3-sklearn-lib:amd64 (1.7.2+dfsg-4) ... 109s Selecting previously unselected package python3-joblib. 109s Preparing to unpack .../52-python3-joblib_1.5.2-1_all.deb ... 109s Unpacking python3-joblib (1.5.2-1) ... 109s Selecting previously unselected package python3-decorator. 109s Preparing to unpack .../53-python3-decorator_5.2.1-2_all.deb ... 109s Unpacking python3-decorator (5.2.1-2) ... 109s Selecting previously unselected package python3-scipy. 109s Preparing to unpack .../54-python3-scipy_1.16.3-3_amd64.deb ... 109s Unpacking python3-scipy (1.16.3-3) ... 109s Selecting previously unselected package python3-threadpoolctl. 109s Preparing to unpack .../55-python3-threadpoolctl_3.1.0-1build1_all.deb ... 109s Unpacking python3-threadpoolctl (3.1.0-1build1) ... 109s Selecting previously unselected package python3-sklearn. 109s Preparing to unpack .../56-python3-sklearn_1.7.2+dfsg-4_all.deb ... 109s Unpacking python3-sklearn (1.7.2+dfsg-4) ... 109s Selecting previously unselected package python3-h5py-serial. 109s Preparing to unpack .../57-python3-h5py-serial_3.15.1-4_amd64.deb ... 109s Unpacking python3-h5py-serial (3.15.1-4) ... 109s Selecting previously unselected package python3-h5py. 109s Preparing to unpack .../58-python3-h5py_3.15.1-4_all.deb ... 109s Unpacking python3-h5py (3.15.1-4) ... 109s Selecting previously unselected package python3-charset-normalizer. 109s Preparing to unpack .../59-python3-charset-normalizer_3.4.4-2_amd64.deb ... 109s Unpacking python3-charset-normalizer (3.4.4-2) ... 109s Selecting previously unselected package python3.13-tk. 109s Preparing to unpack .../60-python3.13-tk_3.13.11-1_amd64.deb ... 109s Unpacking python3.13-tk (3.13.11-1) ... 109s Selecting previously unselected package python3.14-tk. 109s Preparing to unpack .../61-python3.14-tk_3.14.2-1_amd64.deb ... 109s Unpacking python3.14-tk (3.14.2-1) ... 109s Selecting previously unselected package python3-tk. 109s Preparing to unpack .../62-python3-tk_3.14.2-1_amd64.deb ... 109s Unpacking python3-tk (3.14.2-1) ... 109s Selecting previously unselected package python3-pil.imagetk:amd64. 109s Preparing to unpack .../63-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 109s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 109s Selecting previously unselected package libopenjp2-7:amd64. 109s Preparing to unpack .../64-libopenjp2-7_2.5.4-1_amd64.deb ... 109s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 109s Selecting previously unselected package python3-pil:amd64. 109s Preparing to unpack .../65-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 109s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 109s Selecting previously unselected package python3-cairo. 109s Preparing to unpack .../66-python3-cairo_1.27.0-2build1_amd64.deb ... 109s Unpacking python3-cairo (1.27.0-2build1) ... 109s Selecting previously unselected package python3-freetype. 109s Preparing to unpack .../67-python3-freetype_2.5.1-2_all.deb ... 109s Unpacking python3-freetype (2.5.1-2) ... 109s Selecting previously unselected package python3-rlpycairo. 109s Preparing to unpack .../68-python3-rlpycairo_0.3.0-4_all.deb ... 109s Unpacking python3-rlpycairo (0.3.0-4) ... 109s Selecting previously unselected package python3-reportlab. 109s Preparing to unpack .../69-python3-reportlab_4.4.9-1_all.deb ... 109s Unpacking python3-reportlab (4.4.9-1) ... 109s Selecting previously unselected package sgml-base. 109s Preparing to unpack .../70-sgml-base_1.31+nmu1_all.deb ... 109s Unpacking sgml-base (1.31+nmu1) ... 109s Selecting previously unselected package xml-core. 109s Preparing to unpack .../71-xml-core_0.19build1_all.deb ... 109s Unpacking xml-core (0.19build1) ... 109s Selecting previously unselected package w3c-sgml-lib. 109s Preparing to unpack .../72-w3c-sgml-lib_1.3-3build1_all.deb ... 109s Unpacking w3c-sgml-lib (1.3-3build1) ... 109s Selecting previously unselected package python3-biopython. 109s Preparing to unpack .../73-python3-biopython_1.86+dfsg-1_amd64.deb ... 109s Unpacking python3-biopython (1.86+dfsg-1) ... 109s Selecting previously unselected package python-matplotlib-data. 109s Preparing to unpack .../74-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 109s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 109s Selecting previously unselected package python3-contourpy. 109s Preparing to unpack .../75-python3-contourpy_1.3.3-1_amd64.deb ... 109s Unpacking python3-contourpy (1.3.3-1) ... 109s Selecting previously unselected package python3-cycler. 109s Preparing to unpack .../76-python3-cycler_0.12.1-2_all.deb ... 109s Unpacking python3-cycler (0.12.1-2) ... 109s Selecting previously unselected package python3-brotli. 109s Preparing to unpack .../77-python3-brotli_1.1.0-2build6_amd64.deb ... 109s Unpacking python3-brotli (1.1.0-2build6) ... 109s Selecting previously unselected package python3-lxml:amd64. 109s Preparing to unpack .../78-python3-lxml_6.0.2-1_amd64.deb ... 109s Unpacking python3-lxml:amd64 (6.0.2-1) ... 109s Selecting previously unselected package python3-lz4. 109s Preparing to unpack .../79-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 109s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 110s Selecting previously unselected package python3-mpmath. 110s Preparing to unpack .../80-python3-mpmath_1.3.0-2_all.deb ... 110s Unpacking python3-mpmath (1.3.0-2) ... 110s Selecting previously unselected package python3-sympy. 110s Preparing to unpack .../81-python3-sympy_1.14.0-2_all.deb ... 110s Unpacking python3-sympy (1.14.0-2) ... 110s Selecting previously unselected package python3-ufolib2. 110s Preparing to unpack .../82-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 110s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 110s Selecting previously unselected package python3-unicodedata2. 110s Preparing to unpack .../83-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 110s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 110s Selecting previously unselected package python3-zopfli. 110s Preparing to unpack .../84-python3-zopfli_0.4.0-1_amd64.deb ... 110s Unpacking python3-zopfli (0.4.0-1) ... 110s Selecting previously unselected package unicode-data. 110s Preparing to unpack .../85-unicode-data_16.0.0-1build1_all.deb ... 110s Unpacking unicode-data (16.0.0-1build1) ... 110s Selecting previously unselected package python3-fonttools. 110s Preparing to unpack .../86-python3-fonttools_4.61.1-3_amd64.deb ... 110s Unpacking python3-fonttools (4.61.1-3) ... 110s Selecting previously unselected package python3-kiwisolver. 110s Preparing to unpack .../87-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 110s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 110s Selecting previously unselected package python3-matplotlib. 110s Preparing to unpack .../88-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 110s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 110s Selecting previously unselected package python3-pytz. 110s Preparing to unpack .../89-python3-pytz_2025.2-5_all.deb ... 110s Unpacking python3-pytz (2025.2-5) ... 110s Selecting previously unselected package python3-pandas-lib:amd64. 110s Preparing to unpack .../90-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... 110s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 110s Selecting previously unselected package python3-pandas. 110s Preparing to unpack .../91-python3-pandas_2.3.3+dfsg-3_all.deb ... 110s Unpacking python3-pandas (2.3.3+dfsg-3) ... 110s Selecting previously unselected package python3-seaborn. 110s Preparing to unpack .../92-python3-seaborn_0.13.2-6_all.deb ... 110s Unpacking python3-seaborn (0.13.2-6) ... 110s Selecting previously unselected package python3-pysam. 110s Preparing to unpack .../93-python3-pysam_0.23.3+ds-2_amd64.deb ... 110s Unpacking python3-pysam (0.23.3+ds-2) ... 110s Selecting previously unselected package mcaller. 110s Preparing to unpack .../94-mcaller_1.0.3+git20210624.b415090-3build1_all.deb ... 110s Unpacking mcaller (1.0.3+git20210624.b415090-3build1) ... 110s Setting up libhtscodecs2:amd64 (1.6.1-2build1) ... 110s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 110s Setting up liblcms2-2:amd64 (2.17-1) ... 110s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 110s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 110s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 110s Setting up libxrender1:amd64 (1:0.9.12-1) ... 110s Setting up python3-joblib (1.5.2-1) ... 111s Setting up python3-lz4 (4.4.5+dfsg-1) ... 111s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 111s Setting up python3-charset-normalizer (3.4.4-2) ... 111s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 111s Setting up fonts-lyx (2.5.0~RC2-3) ... 111s Setting up python3-threadpoolctl (3.1.0-1build1) ... 111s Setting up x11-common (1:7.7+24ubuntu1) ... 111s Setting up libdeflate0:amd64 (1.23-2) ... 111s Setting up libqhull-r8.0:amd64 (2020.2-8) ... 111s Setting up python3-pytz (2025.2-5) ... 111s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 111s Setting up libgomp1:amd64 (15.2.0-11ubuntu1) ... 111s Setting up python3-freetype (2.5.1-2) ... 111s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 111s Setting up libaec0:amd64 (1.1.4-2) ... 111s Setting up unicode-data (16.0.0-1build1) ... 111s Setting up python3-decorator (5.2.1-2) ... 111s Setting up libfontenc1:amd64 (1:1.1.8-1build2) ... 111s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 111s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 111s Setting up libzopfli1 (1.0.3-3) ... 111s Setting up python3-brotli (1.1.0-2build6) ... 111s Setting up liblzf1:amd64 (3.6-4build1) ... 111s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 111s Setting up python3-cycler (0.12.1-2) ... 112s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 112s Setting up fonts-dejavu-mono (2.37-8build1) ... 112s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 112s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 112s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 112s Setting up fonts-dejavu-core (2.37-8build1) ... 112s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 112s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 112s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 112s Setting up fonts-dejavu-extra (2.37-8build1) ... 112s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 112s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 112s Setting up libopenjp2-7:amd64 (2.5.4-1) ... 112s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 112s Setting up sgml-base (1.31+nmu1) ... 112s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 112s Setting up python3-mpmath (1.3.0-2) ... 112s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 112s Setting up libwebpmux3:amd64 (1.5.0-0.1build1) ... 112s Setting up libsz2:amd64 (1.1.4-2) ... 112s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 112s Setting up python3-sympy (1.14.0-2) ... 116s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 116s return p.returncode 116s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 116s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 116s Setting up python3-pysam (0.23.3+ds-2) ... 116s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 116s Setting up libwebpdemux2:amd64 (1.5.0-0.1build1) ... 116s Setting up xfonts-utils (1:7.7+7build1) ... 116s Setting up python3-zopfli (0.4.0-1) ... 116s Setting up libraqm0:amd64 (0.10.3-1) ... 116s Setting up python3-numpy (1:2.3.5+ds-3) ... 117s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 117s Setting up python3-lxml:amd64 (6.0.2-1) ... 117s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 117s Setting up xml-core (0.19build1) ... 117s Setting up python3-contourpy (1.3.3-1) ... 117s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 117s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 117s Setting up libxft2:amd64 (2.3.6-1build2) ... 117s Setting up python3-scipy (1.16.3-3) ... 120s Setting up libtk8.6:amd64 (8.6.17-1) ... 120s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 120s Setting up python3-sklearn-lib:amd64 (1.7.2+dfsg-4) ... 120s Setting up python3-h5py-serial (3.15.1-4) ... 120s Setting up fonts-urw-base35 (20200910-8build1) ... 120s Setting up libcairo2:amd64 (1.18.4-3) ... 120s Setting up python3.13-tk (3.13.11-1) ... 120s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 120s Setting up python3-pandas (2.3.3+dfsg-3) ... 123s Setting up python3-h5py (3.15.1-4) ... 123s Setting up python3-sklearn (1.7.2+dfsg-4) ... 124s Setting up python3.14-tk (3.14.2-1) ... 124s Setting up python3-cairo (1.27.0-2build1) ... 125s Setting up python3-tk (3.14.2-1) ... 125s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 125s Setting up python3-rlpycairo (0.3.0-4) ... 125s Setting up python3-reportlab (4.4.9-1) ... 125s Setting up python3-fonttools (4.61.1-3) ... 126s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 126s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 127s Setting up python3-seaborn (0.13.2-6) ... 127s Processing triggers for man-db (2.13.1-1) ... 128s Processing triggers for libc-bin (2.42-2ubuntu4) ... 128s Processing triggers for sgml-base (1.31+nmu1) ... 128s Setting up w3c-sgml-lib (1.3-3build1) ... 143s Setting up python3-biopython (1.86+dfsg-1) ... 144s Setting up mcaller (1.0.3+git20210624.b415090-3build1) ... 145s autopkgtest [06:25:02]: test environment configured for cross building 145s autopkgtest [06:25:02]: test run-unit-test: [----------------------- 146s testdata/ 146s 1 contigs 146s 1 threads 146s thread finished processing...: 146s 35 observations 146s 35 positions 146s 0 regions with multiple methylated bases 146s 0 observations with skips included 146s 8 observations with too many skips 146s Finished extracting signals 147s testdata/ 147s 1 contigs 147s 1 threads 147s thread finished processing...: 147s 9 observations 147s 9 positions 147s 0 regions with multiple methylated bases 147s 0 observations with skips included 147s 2 observations with too many skips 147s Finished extracting signals 147s testdata/ 147s 1 contigs 147s 4 threads 148s Traceback (most recent call last): 148s File "/usr/bin/mCaller", line 187, in 148s main() 148s ~~~~^^ 148s File "/usr/bin/mCaller", line 183, in main 148s distribute_threads(args.positions,args.motif,args.tsv,read2qual,args.reference,num_refs,base,mod,args.threads,args.num_variables, 148s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 148s args.train,modelfile,args.skip_thresh,args.qual_thresh,args.classifier,training_tsv,args.plot_training) 148s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 148s File "/usr/bin/mCaller", line 70, in distribute_threads 148s p.start() 148s ~~~~~~~^^ 148s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 148s self._popen = self._Popen(self) 148s ~~~~~~~~~~~^^^^^^ 148s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 148s return _default_context.get_context().Process._Popen(process_obj) 148s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 148s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 148s return Popen(process_obj) 148s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 148s super().__init__(process_obj) 148s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 148s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 148s self._launch(process_obj) 148s ~~~~~~~~~~~~^^^^^^^^^^^^^ 148s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 47, in _launch 148s reduction.dump(process_obj, buf) 148s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ 148s File "/usr/lib/python3.14/multiprocessing/reduction.py", line 60, in dump 148s ForkingPickler(file, protocol).dump(obj) 148s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ 148s _pickle.PicklingError: Can't pickle local object .worker at 0x78b866005010> 148s when serializing dict item '_target' 148s when serializing multiprocessing.context.Process state 148s when serializing multiprocessing.context.Process object 149s autopkgtest [06:25:06]: test run-unit-test: -----------------------] 149s autopkgtest [06:25:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 149s run-unit-test FAIL non-zero exit status 1 149s autopkgtest [06:25:06]: @@@@@@@@@@@@@@@@@@@@ summary 149s run-unit-test FAIL non-zero exit status 1