0s autopkgtest [03:20:14]: starting date and time: 2026-01-23 03:20:14+0000 0s autopkgtest [03:20:14]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:20:14]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qjf7jrsk/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade lefse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-2.secgroup --name adt-resolute-i386-lefse-20260123-032014-juju-7f2275-prod-proposed-migration-environment-15-ee7d3d9f-75b0-436a-80ef-d1fbd1824c5c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-lefse-20260123-032014-juju-7f2275-prod-proposed-migration-environment-15-ee7d3d9f-75b0-436a-80ef-d1fbd1824c5c from image adt/ubuntu-resolute-amd64-server-20260122.img (UUID d51ec989-51d3-406a-bc50-4c9902afb6a4)... 99s autopkgtest [03:21:53]: testbed dpkg architecture: amd64 99s autopkgtest [03:21:53]: testbed apt version: 3.1.12 100s autopkgtest [03:21:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s autopkgtest [03:21:54]: testbed release detected to be: None 101s autopkgtest [03:21:55]: updating testbed package index (apt update) 101s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 101s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 101s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1181 kB] 101s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.1 kB] 101s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 101s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 101s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [106 kB] 101s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [127 kB] 101s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3384 B] 101s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 101s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 101s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 101s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1031 kB] 101s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [437 kB] 102s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.3 kB] 102s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.6 kB] 102s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 102s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [564 B] 102s Fetched 3187 kB in 1s (3229 kB/s) 103s Reading package lists... 104s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 104s The following packages were automatically installed and are no longer required: 104s python3.13 python3.13-minimal 104s Use 'sudo apt autoremove' to remove them. 104s The following NEW packages will be installed: 104s libpython3.14-minimal libpython3.14-stdlib linux-headers-6.18.0-9 104s linux-headers-6.18.0-9-generic linux-image-6.18.0-9-generic 104s linux-modules-6.18.0-9-generic linux-tools-6.18.0-9 104s linux-tools-6.18.0-9-generic python3.14 python3.14-minimal 104s The following packages will be upgraded: 104s apt bpftool dhcpcd-base libapt-pkg7.0 libplymouth5 libpython3-stdlib 104s linux-generic linux-headers-generic linux-headers-virtual 104s linux-image-generic linux-image-virtual linux-libc-dev linux-perf 104s linux-tools-common linux-virtual plymouth plymouth-theme-ubuntu-text python3 104s python3-gdbm python3-minimal 104s 20 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 223 MB of archives. 104s After this operation, 336 MB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 105s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 105s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 105s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 105s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 105s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 105s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 105s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 105s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.13 [1151 kB] 105s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.13 [1478 kB] 105s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 dhcpcd-base amd64 1:10.3.0-7 [228 kB] 105s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libplymouth5 amd64 24.004.60+git20250831.4a3c171d-0ubuntu4 [143 kB] 105s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 plymouth-theme-ubuntu-text amd64 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.2 kB] 105s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 plymouth amd64 24.004.60+git20250831.4a3c171d-0ubuntu4 [139 kB] 105s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.18.0-9.9 [1256 kB] 106s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.18.0-9-generic amd64 6.18.0-9.9 [168 MB] 112s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.18.0-9-generic amd64 6.18.0-9.9 [16.5 MB] 112s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.18.0-9.9+1 [1696 B] 112s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.18.0-9.9+1 [12.2 kB] 112s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.18.0-9.9+1 [1692 B] 112s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.18.0-9.9+1 [12.1 kB] 112s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.18.0-9.9+1 [1648 B] 112s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.18.0-9 all 6.18.0-9.9 [14.9 MB] 113s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.18.0-9-generic amd64 6.18.0-9.9 [4290 kB] 113s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.18.0-9.9+1 [12.0 kB] 113s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 113s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.18.0-9.9 [4480 kB] 113s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.18.0-9.9 [377 kB] 113s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.18.0-9 amd64 6.18.0-9.9 [1510 kB] 113s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.18.0-9-generic amd64 6.18.0-9.9 [1608 B] 114s dpkg-preconfigure: unable to re-open stdin: No such file or directory 114s Fetched 223 MB in 9s (24.0 MB/s) 114s Selecting previously unselected package libpython3.14-minimal:amd64. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83885 files and directories currently installed.) 114s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 114s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 114s Selecting previously unselected package python3.14-minimal. 114s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 114s Unpacking python3.14-minimal (3.14.2-1) ... 114s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 114s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 114s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 114s Setting up python3.14-minimal (3.14.2-1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84227 files and directories currently installed.) 115s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 115s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 115s Setting up python3-minimal (3.14.2-1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84227 files and directories currently installed.) 115s Preparing to unpack .../00-python3_3.14.2-1_amd64.deb ... 115s running python pre-rtupdate hooks for python3.14... 115s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 115s Selecting previously unselected package libpython3.14-stdlib:amd64. 115s Preparing to unpack .../01-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 115s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 115s Selecting previously unselected package python3.14. 115s Preparing to unpack .../02-python3.14_3.14.2-1_amd64.deb ... 115s Unpacking python3.14 (3.14.2-1) ... 115s Preparing to unpack .../03-libpython3-stdlib_3.14.2-1_amd64.deb ... 115s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.7-1) ... 115s Preparing to unpack .../04-libapt-pkg7.0_3.1.13_amd64.deb ... 115s Unpacking libapt-pkg7.0:amd64 (3.1.13) over (3.1.12) ... 115s Preparing to unpack .../05-apt_3.1.13_amd64.deb ... 115s Unpacking apt (3.1.13) over (3.1.12) ... 115s Preparing to unpack .../06-dhcpcd-base_1%3a10.3.0-7_amd64.deb ... 115s Unpacking dhcpcd-base (1:10.3.0-7) over (1:10.3.0-3) ... 115s Preparing to unpack .../07-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_amd64.deb ... 115s Unpacking libplymouth5:amd64 (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 115s Preparing to unpack .../08-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_amd64.deb ... 115s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 115s Preparing to unpack .../09-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_amd64.deb ... 115s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 115s Preparing to unpack .../10-bpftool_7.7.0+6.18.0-9.9_amd64.deb ... 115s Unpacking bpftool (7.7.0+6.18.0-9.9) over (7.7.0+6.18.0-8.8) ... 115s Selecting previously unselected package linux-modules-6.18.0-9-generic. 115s Preparing to unpack .../11-linux-modules-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 115s Unpacking linux-modules-6.18.0-9-generic (6.18.0-9.9) ... 116s Selecting previously unselected package linux-image-6.18.0-9-generic. 116s Preparing to unpack .../12-linux-image-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 116s Unpacking linux-image-6.18.0-9-generic (6.18.0-9.9) ... 116s Preparing to unpack .../13-linux-generic_6.18.0-9.9+1_amd64.deb ... 116s Unpacking linux-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 116s Preparing to unpack .../14-linux-image-generic_6.18.0-9.9+1_amd64.deb ... 116s Unpacking linux-image-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 116s Preparing to unpack .../15-linux-virtual_6.18.0-9.9+1_amd64.deb ... 116s Unpacking linux-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 116s Preparing to unpack .../16-linux-image-virtual_6.18.0-9.9+1_amd64.deb ... 116s Unpacking linux-image-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 116s Preparing to unpack .../17-linux-headers-virtual_6.18.0-9.9+1_amd64.deb ... 116s Unpacking linux-headers-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 116s Selecting previously unselected package linux-headers-6.18.0-9. 116s Preparing to unpack .../18-linux-headers-6.18.0-9_6.18.0-9.9_all.deb ... 116s Unpacking linux-headers-6.18.0-9 (6.18.0-9.9) ... 118s Selecting previously unselected package linux-headers-6.18.0-9-generic. 118s Preparing to unpack .../19-linux-headers-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 118s Unpacking linux-headers-6.18.0-9-generic (6.18.0-9.9) ... 118s Preparing to unpack .../20-linux-headers-generic_6.18.0-9.9+1_amd64.deb ... 118s Unpacking linux-headers-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 118s Preparing to unpack .../21-linux-libc-dev_6.18.0-9.9_amd64.deb ... 118s Unpacking linux-libc-dev:amd64 (6.18.0-9.9) over (6.18.0-8.8) ... 118s Preparing to unpack .../22-linux-perf_6.18.0-9.9_amd64.deb ... 118s Unpacking linux-perf (6.18.0-9.9) over (6.18.0-8.8) ... 119s Preparing to unpack .../23-linux-tools-common_6.18.0-9.9_all.deb ... 119s Unpacking linux-tools-common (6.18.0-9.9) over (6.18.0-8.8) ... 119s Selecting previously unselected package linux-tools-6.18.0-9. 119s Preparing to unpack .../24-linux-tools-6.18.0-9_6.18.0-9.9_amd64.deb ... 119s Unpacking linux-tools-6.18.0-9 (6.18.0-9.9) ... 119s Selecting previously unselected package linux-tools-6.18.0-9-generic. 119s Preparing to unpack .../25-linux-tools-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 119s Unpacking linux-tools-6.18.0-9-generic (6.18.0-9.9) ... 119s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 119s Setting up bpftool (7.7.0+6.18.0-9.9) ... 119s Setting up linux-libc-dev:amd64 (6.18.0-9.9) ... 119s Setting up linux-perf (6.18.0-9.9) ... 119s Setting up dhcpcd-base (1:10.3.0-7) ... 119s Setting up libplymouth5:amd64 (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 119s Setting up linux-headers-6.18.0-9 (6.18.0-9.9) ... 119s Setting up linux-modules-6.18.0-9-generic (6.18.0-9.9) ... 120s Setting up libapt-pkg7.0:amd64 (3.1.13) ... 120s Setting up python3.14 (3.14.2-1) ... 121s Setting up linux-image-6.18.0-9-generic (6.18.0-9.9) ... 122s I: /boot/vmlinuz is now a symlink to vmlinuz-6.18.0-9-generic 122s I: /boot/initrd.img is now a symlink to initrd.img-6.18.0-9-generic 122s Setting up linux-tools-common (6.18.0-9.9) ... 122s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 122s Setting up linux-headers-6.18.0-9-generic (6.18.0-9.9) ... 122s Setting up linux-image-generic (6.18.0-9.9+1) ... 122s Setting up apt (3.1.13) ... 122s Setting up python3-gdbm (3.14.2-1) ... 122s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 122s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 122s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 122s Setting up linux-tools-6.18.0-9 (6.18.0-9.9) ... 122s Setting up python3 (3.14.2-1) ... 123s running python rtupdate hooks for python3.14... 123s running python post-rtupdate hooks for python3.14... 123s Setting up linux-headers-generic (6.18.0-9.9+1) ... 123s Setting up linux-image-virtual (6.18.0-9.9+1) ... 123s Setting up linux-headers-virtual (6.18.0-9.9+1) ... 123s Setting up linux-generic (6.18.0-9.9+1) ... 123s Setting up linux-tools-6.18.0-9-generic (6.18.0-9.9) ... 123s Setting up linux-virtual (6.18.0-9.9+1) ... 123s Processing triggers for libc-bin (2.42-2ubuntu4) ... 123s Processing triggers for systemd (259-1ubuntu2) ... 123s Processing triggers for man-db (2.13.1-1) ... 124s Processing triggers for initramfs-tools (0.150ubuntu7) ... 124s update-initramfs: Generating /boot/initrd.img-6.18.0-8-generic 128s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 128s Processing triggers for linux-image-6.18.0-9-generic (6.18.0-9.9) ... 128s /etc/kernel/postinst.d/initramfs-tools: 128s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 132s /etc/kernel/postinst.d/zz-update-grub: 132s Sourcing file `/etc/default/grub' 132s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 132s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 132s Generating grub configuration file ... 132s Found linux image: /boot/vmlinuz-6.18.0-9-generic 132s Found initrd image: /boot/initrd.img-6.18.0-9-generic 132s Found linux image: /boot/vmlinuz-6.18.0-8-generic 132s Found initrd image: /boot/initrd.img-6.18.0-8-generic 132s Warning: os-prober will not be executed to detect other bootable partitions. 132s Systems on them will not be added to the GRUB boot configuration. 132s Check GRUB_DISABLE_OS_PROBER documentation entry. 132s Adding boot menu entry for UEFI Firmware Settings ... 132s done 132s Processing triggers for initramfs-tools (0.150ubuntu7) ... 132s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 136s autopkgtest [03:22:30]: upgrading testbed (apt dist-upgrade and autopurge) 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade... 137s The following packages were automatically installed and are no longer required: 137s python3.13 python3.13-minimal 137s Use 'sudo apt autoremove' to remove them. 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Solving dependencies... 137s The following packages will be REMOVED: 137s python3.13* python3.13-minimal* 137s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 137s After this operation, 7860 kB disk space will be freed. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124948 files and directories currently installed.) 137s Removing python3.13 (3.13.11-1) ... 137s Removing python3.13-minimal (3.13.11-1) ... 138s Processing triggers for man-db (2.13.1-1) ... 138s Processing triggers for systemd (259-1ubuntu2) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124921 files and directories currently installed.) 138s Purging configuration files for python3.13-minimal (3.13.11-1) ... 138s autopkgtest [03:22:32]: rebooting testbed after setup commands that affected boot 220s autopkgtest [03:23:54]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 222s autopkgtest [03:23:56]: @@@@@@@@@@@@@@@@@@@@ apt-source lefse 224s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (dsc) [1944 B] 224s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (tar) [64.1 kB] 224s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (diff) [12.9 kB] 224s gpgv: Signature made Wed Dec 4 19:15:55 2024 UTC 224s gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 224s gpgv: Can't check signature: No public key 224s dpkg-source: warning: cannot verify inline signature for ./lefse_1.1.2-2.dsc: no acceptable signature found 224s autopkgtest [03:23:58]: testing package lefse version 1.1.2-2 224s autopkgtest [03:23:58]: build not needed 224s autopkgtest [03:23:58]: test run-unit-test: preparing testbed 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 225s Solving dependencies... 225s The following NEW packages will be installed: 225s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 225s lefse libaec0 libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 225s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 225s libhdf5-hl-310 libice6 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 225s liblapack3 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpango-1.0-0 225s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 225s libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libsz2 libtcl8.6 libthai-data 225s libthai0 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 225s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 libxt6t64 libzopfli1 225s python-matplotlib-data python3-biom-format python3-brotli python3-click 225s python3-contourpy python3-cycler python3-decorator python3-fonttools 225s python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml python3-lz4 225s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 225s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 225s python3-pytz python3-rpy2 python3-scipy python3-sympy python3-tk 225s python3-tzlocal python3-ufolib2 python3-unicodedata2 python3-zopfli 225s python3.13-tk python3.14-tk r-base-core r-cran-codetools r-cran-coin 225s r-cran-lattice r-cran-libcoin r-cran-mass r-cran-matrix r-cran-matrixstats 225s r-cran-modeltools r-cran-multcomp r-cran-mvtnorm r-cran-sandwich 225s r-cran-survival r-cran-th.data r-cran-zoo unicode-data unzip x11-common 225s xdg-utils zip 225s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 153 MB of archives. 225s After this operation, 525 MB of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 225s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 225s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 225s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 225s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 225s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 225s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 225s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 225s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 225s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.15.0-2.4ubuntu1 [178 kB] 225s Get:11 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 225s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 225s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 225s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 225s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 225s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 225s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 225s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 225s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 225s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 225s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 225s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 226s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 226s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 226s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-3 [18.8 MB] 226s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-biom-format amd64 2.1.17-1 [220 kB] 226s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 226s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 226s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 226s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 226s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 226s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 226s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 226s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 226s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 226s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 226s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 226s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 226s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 226s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 226s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 226s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 226s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 226s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 226s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 226s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 226s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 226s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 226s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 226s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 226s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 226s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 226s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 226s Get:54 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-tk amd64 3.14.2-1 [11.2 kB] 226s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 226s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 226s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 226s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 226s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 226s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 226s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 226s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 226s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 226s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 226s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 226s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 226s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 226s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 226s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 226s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 226s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 227s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tzlocal all 5.3.1-2 [20.8 kB] 227s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 227s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 227s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 227s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 227s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 227s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 227s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 227s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 227s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 227s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 227s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 227s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 227s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.4-1 [240 kB] 227s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.4-1 [53.2 kB] 227s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.4-1 [29.0 kB] 227s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 227s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 227s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 227s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 227s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-rpy2 amd64 3.6.4-2 [221 kB] 227s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 227s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 227s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 228s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 228s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-libcoin amd64 1.0-10-1 [767 kB] 228s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 228s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-modeltools all 0.2-24-1 [224 kB] 228s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 228s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-th.data all 1.1-5-1 [8740 kB] 228s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 228s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 228s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 228s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-multcomp all 1.4-29-1 [617 kB] 228s Get:106 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-coin amd64 1.4-3-1 [1560 kB] 228s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 lefse all 1.1.2-2 [58.1 kB] 229s Preconfiguring packages ... 229s Fetched 153 MB in 4s (41.3 MB/s) 229s Selecting previously unselected package python3-numpy-dev:amd64. 229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124923 files and directories currently installed.) 229s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 229s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 229s Selecting previously unselected package libblas3:amd64. 229s Preparing to unpack .../001-libblas3_3.12.1-7ubuntu1_amd64.deb ... 229s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 229s Selecting previously unselected package libgfortran5:amd64. 229s Preparing to unpack .../002-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 229s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 229s Selecting previously unselected package liblapack3:amd64. 229s Preparing to unpack .../003-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 229s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 229s Selecting previously unselected package python3-numpy. 229s Preparing to unpack .../004-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 229s Unpacking python3-numpy (1:2.3.5+ds-3) ... 229s Selecting previously unselected package fonts-dejavu-mono. 229s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8build1_all.deb ... 229s Unpacking fonts-dejavu-mono (2.37-8build1) ... 229s Selecting previously unselected package fonts-dejavu-core. 229s Preparing to unpack .../006-fonts-dejavu-core_2.37-8build1_all.deb ... 229s Unpacking fonts-dejavu-core (2.37-8build1) ... 229s Selecting previously unselected package fontconfig-config. 229s Preparing to unpack .../007-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 229s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 229s Selecting previously unselected package libfontconfig1:amd64. 229s Preparing to unpack .../008-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 229s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 229s Selecting previously unselected package fontconfig. 229s Preparing to unpack .../009-fontconfig_2.15.0-2.4ubuntu1_amd64.deb ... 229s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 229s Selecting previously unselected package fonts-lyx. 229s Preparing to unpack .../010-fonts-lyx_2.5.0~RC2-3_all.deb ... 229s Unpacking fonts-lyx (2.5.0~RC2-3) ... 229s Selecting previously unselected package libaec0:amd64. 229s Preparing to unpack .../011-libaec0_1.1.4-2_amd64.deb ... 229s Unpacking libaec0:amd64 (1.1.4-2) ... 229s Selecting previously unselected package libsz2:amd64. 229s Preparing to unpack .../012-libsz2_1.1.4-2_amd64.deb ... 229s Unpacking libsz2:amd64 (1.1.4-2) ... 229s Selecting previously unselected package libhdf5-310:amd64. 229s Preparing to unpack .../013-libhdf5-310_1.14.5+repack-4_amd64.deb ... 229s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 229s Selecting previously unselected package libhdf5-hl-310:amd64. 229s Preparing to unpack .../014-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 229s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 229s Selecting previously unselected package liblzf1:amd64. 229s Preparing to unpack .../015-liblzf1_3.6-4build1_amd64.deb ... 229s Unpacking liblzf1:amd64 (3.6-4build1) ... 229s Selecting previously unselected package python3-h5py-serial. 229s Preparing to unpack .../016-python3-h5py-serial_3.15.1-4_amd64.deb ... 229s Unpacking python3-h5py-serial (3.15.1-4) ... 229s Selecting previously unselected package python3-h5py. 229s Preparing to unpack .../017-python3-h5py_3.15.1-4_all.deb ... 229s Unpacking python3-h5py (3.15.1-4) ... 229s Selecting previously unselected package python3-click. 229s Preparing to unpack .../018-python3-click_8.2.0+0.really.8.1.8-1build1_all.deb ... 229s Unpacking python3-click (8.2.0+0.really.8.1.8-1build1) ... 229s Selecting previously unselected package python3-pytz. 229s Preparing to unpack .../019-python3-pytz_2025.2-5_all.deb ... 229s Unpacking python3-pytz (2025.2-5) ... 229s Selecting previously unselected package python3-pandas-lib:amd64. 229s Preparing to unpack .../020-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... 229s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 230s Selecting previously unselected package python3-pandas. 230s Preparing to unpack .../021-python3-pandas_2.3.3+dfsg-3_all.deb ... 230s Unpacking python3-pandas (2.3.3+dfsg-3) ... 230s Selecting previously unselected package python3-decorator. 230s Preparing to unpack .../022-python3-decorator_5.2.1-2_all.deb ... 230s Unpacking python3-decorator (5.2.1-2) ... 230s Selecting previously unselected package libqhull-r8.0:amd64. 230s Preparing to unpack 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230s Selecting previously unselected package libharfbuzz0b:amd64. 230s Preparing to unpack .../034-libharfbuzz0b_12.3.0-4_amd64.deb ... 230s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 230s Selecting previously unselected package libraqm0:amd64. 230s Preparing to unpack .../035-libraqm0_0.10.3-1_amd64.deb ... 230s Unpacking libraqm0:amd64 (0.10.3-1) ... 230s Selecting previously unselected package libdeflate0:amd64. 230s Preparing to unpack .../036-libdeflate0_1.23-2_amd64.deb ... 230s Unpacking libdeflate0:amd64 (1.23-2) ... 230s Selecting previously unselected package libjbig0:amd64. 230s Preparing to unpack .../037-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 230s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 230s Selecting previously unselected package liblerc4:amd64. 230s Preparing to unpack .../038-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 230s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 230s Selecting previously unselected package libsharpyuv0:amd64. 230s Preparing to unpack .../039-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 230s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 230s Selecting previously unselected package libwebp7:amd64. 230s Preparing to unpack .../040-libwebp7_1.5.0-0.1build1_amd64.deb ... 230s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 230s Selecting previously unselected package libtiff6:amd64. 230s Preparing to unpack .../041-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 230s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 230s Selecting previously unselected package libwebpdemux2:amd64. 230s Preparing to unpack .../042-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 230s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 230s Selecting previously unselected package libwebpmux3:amd64. 230s Preparing to unpack .../043-libwebpmux3_1.5.0-0.1build1_amd64.deb ... 230s Unpacking libwebpmux3:amd64 (1.5.0-0.1build1) ... 230s Selecting previously unselected package python3-pil:amd64. 230s Preparing to unpack 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(1:1.2.3-1build4) ... 230s Selecting previously unselected package libtk8.6:amd64. 230s Preparing to unpack .../050-libtk8.6_8.6.17-1_amd64.deb ... 230s Unpacking libtk8.6:amd64 (8.6.17-1) ... 230s Selecting previously unselected package python3.13-tk. 230s Preparing to unpack .../051-python3.13-tk_3.13.11-1_amd64.deb ... 230s Unpacking python3.13-tk (3.13.11-1) ... 230s Selecting previously unselected package python3.14-tk. 231s Preparing to unpack .../052-python3.14-tk_3.14.2-1_amd64.deb ... 231s Unpacking python3.14-tk (3.14.2-1) ... 231s Selecting previously unselected package python3-tk. 231s Preparing to unpack .../053-python3-tk_3.14.2-1_amd64.deb ... 231s Unpacking python3-tk (3.14.2-1) ... 231s Selecting previously unselected package python3-pil.imagetk:amd64. 231s Preparing to unpack .../054-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 231s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 231s Selecting previously unselected package python3-contourpy. 231s Preparing to unpack .../055-python3-contourpy_1.3.3-1_amd64.deb ... 231s Unpacking python3-contourpy (1.3.3-1) ... 231s Selecting previously unselected package python3-cycler. 231s Preparing to unpack .../056-python3-cycler_0.12.1-2_all.deb ... 231s Unpacking python3-cycler (0.12.1-2) ... 231s Selecting previously unselected package python3-brotli. 231s Preparing to unpack .../057-python3-brotli_1.1.0-2build6_amd64.deb ... 231s Unpacking python3-brotli (1.1.0-2build6) ... 231s Selecting previously unselected package libxslt1.1:amd64. 231s Preparing to unpack .../058-libxslt1.1_1.1.43-0.3_amd64.deb ... 231s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 231s Selecting previously unselected package python3-lxml:amd64. 231s Preparing to unpack .../059-python3-lxml_6.0.2-1_amd64.deb ... 231s Unpacking python3-lxml:amd64 (6.0.2-1) ... 231s Selecting previously unselected package python3-lz4. 231s Preparing to unpack .../060-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 231s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 231s Selecting previously unselected package python3-mpmath. 231s Preparing to unpack .../061-python3-mpmath_1.3.0-2_all.deb ... 231s Unpacking python3-mpmath (1.3.0-2) ... 231s Selecting previously unselected package python3-sympy. 231s Preparing to unpack .../062-python3-sympy_1.14.0-2_all.deb ... 231s Unpacking python3-sympy (1.14.0-2) ... 231s Selecting previously unselected package python3-ufolib2. 231s Preparing to unpack .../063-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 231s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 231s Selecting previously unselected package python3-unicodedata2. 231s Preparing to unpack .../064-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 231s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 231s Selecting previously unselected package libzopfli1. 231s Preparing to unpack .../065-libzopfli1_1.0.3-3_amd64.deb ... 231s Unpacking libzopfli1 (1.0.3-3) ... 231s Selecting previously unselected package python3-zopfli. 231s Preparing to unpack .../066-python3-zopfli_0.4.0-1_amd64.deb ... 231s Unpacking python3-zopfli (0.4.0-1) ... 231s Selecting previously unselected package unicode-data. 231s Preparing to unpack .../067-unicode-data_16.0.0-1build1_all.deb ... 231s Unpacking unicode-data (16.0.0-1build1) ... 231s Selecting previously unselected package python3-fonttools. 231s Preparing to unpack .../068-python3-fonttools_4.61.1-3_amd64.deb ... 231s Unpacking python3-fonttools (4.61.1-3) ... 231s Selecting previously unselected package python3-kiwisolver. 231s Preparing to unpack .../069-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 231s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 231s Selecting previously unselected package python3-matplotlib. 231s Preparing to unpack .../070-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 231s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 231s Selecting previously unselected package python3-tzlocal. 231s Preparing to unpack .../071-python3-tzlocal_5.3.1-2_all.deb ... 231s Unpacking python3-tzlocal (5.3.1-2) ... 231s Selecting previously unselected package zip. 231s Preparing to unpack .../072-zip_3.0-15ubuntu2_amd64.deb ... 231s Unpacking zip (3.0-15ubuntu2) ... 231s Selecting previously unselected package unzip. 231s Preparing to unpack .../073-unzip_6.0-29ubuntu1_amd64.deb ... 231s Unpacking unzip (6.0-29ubuntu1) ... 231s Selecting previously unselected package libpaper2:amd64. 231s Preparing to unpack .../074-libpaper2_2.2.5-0.3build1_amd64.deb ... 231s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 231s Selecting previously unselected package libpaper-utils. 231s Preparing to unpack .../075-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 231s Unpacking libpaper-utils (2.2.5-0.3build1) ... 231s Selecting previously unselected package xdg-utils. 231s Preparing to unpack .../076-xdg-utils_1.2.1-2ubuntu2_all.deb ... 231s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 231s Selecting previously unselected package libpixman-1-0:amd64. 231s Preparing to unpack .../077-libpixman-1-0_0.46.4-1_amd64.deb ... 231s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 231s Selecting previously unselected package libxcb-render0:amd64. 231s Preparing to unpack .../078-libxcb-render0_1.17.0-2build1_amd64.deb ... 231s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 231s Selecting previously unselected package libxcb-shm0:amd64. 231s Preparing to unpack .../079-libxcb-shm0_1.17.0-2build1_amd64.deb ... 231s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 231s Selecting previously unselected package libcairo2:amd64. 231s Preparing to unpack .../080-libcairo2_1.18.4-3_amd64.deb ... 231s Unpacking libcairo2:amd64 (1.18.4-3) ... 231s Selecting previously unselected package libthai-data. 231s Preparing to unpack .../081-libthai-data_0.1.30-1_all.deb ... 231s Unpacking libthai-data (0.1.30-1) ... 231s Selecting previously unselected package libdatrie1:amd64. 232s Preparing to unpack .../082-libdatrie1_0.2.14-1_amd64.deb ... 232s Unpacking libdatrie1:amd64 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package libsm6:amd64. 232s Preparing to unpack .../088-libsm6_2%3a1.2.6-1_amd64.deb ... 232s Unpacking libsm6:amd64 (2:1.2.6-1) ... 232s Selecting previously unselected package libxt6t64:amd64. 232s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 232s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 232s Selecting previously unselected package r-base-core. 232s Preparing to unpack .../090-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 232s Unpacking r-base-core (4.5.2-1ubuntu2) ... 232s Selecting previously unselected package python3-rpy2. 232s Preparing to unpack .../091-python3-rpy2_3.6.4-2_amd64.deb ... 232s Unpacking python3-rpy2 (3.6.4-2) ... 232s Selecting previously unselected package r-cran-lattice. 232s Preparing to unpack .../092-r-cran-lattice_0.22-7-1_amd64.deb ... 232s Unpacking r-cran-lattice (0.22-7-1) ... 232s Selecting previously unselected package r-cran-matrix. 232s Preparing to unpack .../093-r-cran-matrix_1.7-4-1_amd64.deb ... 232s Unpacking r-cran-matrix 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unselected package r-cran-coin. 232s Preparing to unpack .../105-r-cran-coin_1.4-3-1_amd64.deb ... 232s Unpacking r-cran-coin (1.4-3-1) ... 232s Selecting previously unselected package lefse. 232s Preparing to unpack .../106-lefse_1.1.2-2_all.deb ... 232s Unpacking lefse (1.1.2-2) ... 232s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 232s Setting up liblcms2-2:amd64 (2.17-1) ... 232s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 232s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 232s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 232s Setting up libxrender1:amd64 (1:0.9.12-1) ... 232s Setting up libdatrie1:amd64 (0.2.14-1) ... 232s Setting up python3-lz4 (4.4.5+dfsg-1) ... 232s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 232s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 232s Setting up fonts-lyx (2.5.0~RC2-3) ... 232s Setting up unzip (6.0-29ubuntu1) ... 232s Setting up x11-common (1:7.7+24ubuntu1) ... 233s Setting up libdeflate0:amd64 (1.23-2) ... 233s Setting up libqhull-r8.0:amd64 (2020.2-8) ... 233s Setting up python3-pytz (2025.2-5) ... 233s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 233s Setting up libgomp1:amd64 (15.2.0-11ubuntu1) ... 233s Setting up python3-click (8.2.0+0.really.8.1.8-1build1) ... 233s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 233s Setting up libaec0:amd64 (1.1.4-2) ... 233s Setting up unicode-data (16.0.0-1build1) ... 233s Setting up python3-decorator (5.2.1-2) ... 233s Setting up zip (3.0-15ubuntu2) ... 233s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 233s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 233s Setting up libzopfli1 (1.0.3-3) ... 233s Setting up python3-brotli (1.1.0-2build6) ... 233s Setting up liblzf1:amd64 (3.6-4build1) ... 233s Setting up python3-cycler (0.12.1-2) ... 233s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 233s Setting up fonts-dejavu-mono (2.37-8build1) ... 233s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 233s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 233s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 233s Setting up fonts-dejavu-core (2.37-8build1) ... 233s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 233s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 233s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 233s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 233s Setting up libopenjp2-7:amd64 (2.5.4-1) ... 233s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 233s Setting up libthai-data (0.1.30-1) ... 233s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 233s Setting up libpaper2:amd64 (2.2.5-0.3build1) ... 233s Setting up python3-mpmath (1.3.0-2) ... 233s Setting up python3-tzlocal (5.3.1-2) ... 233s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 233s Setting up libwebpmux3:amd64 (1.5.0-0.1build1) ... 233s Setting up xdg-utils (1.2.1-2ubuntu2) ... 233s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 233s Setting up libsz2:amd64 (1.1.4-2) ... 233s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 233s Setting up python3-sympy (1.14.0-2) ... 237s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 237s return p.returncode 237s Setting up libice6:amd64 (2:1.1.1-1build1) ... 237s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 237s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 237s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 237s Setting up libwebpdemux2:amd64 (1.5.0-0.1build1) ... 237s Setting up libpaper-utils (2.2.5-0.3build1) ... 237s Setting up python3-zopfli (0.4.0-1) ... 237s Setting up libthai0:amd64 (0.1.30-1) ... 237s Setting up libraqm0:amd64 (0.10.3-1) ... 237s Setting up python3-numpy (1:2.3.5+ds-3) ... 239s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 239s Setting up python3-lxml:amd64 (6.0.2-1) ... 239s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 239s Setting up python3-contourpy (1.3.3-1) ... 239s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 239s Setting up libsm6:amd64 (2:1.2.6-1) ... 239s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 239s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 241s Regenerating fonts cache... done. 241s Setting up libxft2:amd64 (2.3.6-1build2) ... 241s Setting up python3-scipy (1.16.3-3) ... 243s Setting up libtk8.6:amd64 (8.6.17-1) ... 243s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 243s Setting up libpango-1.0-0:amd64 (1.56.4-1) ... 243s Setting up python3-h5py-serial (3.15.1-4) ... 243s Setting up libcairo2:amd64 (1.18.4-3) ... 243s Setting up python3.13-tk (3.13.11-1) ... 243s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 243s Setting up python3-pandas (2.3.3+dfsg-3) ... 246s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... 246s Setting up python3-h5py (3.15.1-4) ... 246s Setting up libpangoft2-1.0-0:amd64 (1.56.4-1) ... 246s Setting up libpangocairo-1.0-0:amd64 (1.56.4-1) ... 246s Setting up python3.14-tk (3.14.2-1) ... 246s Setting up python3-tk (3.14.2-1) ... 246s Setting up python3-biom-format (2.1.17-1) ... 246s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:274: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option. 246s if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): 246s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:316: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 246s return [self['Signature'].replace('*','\*')] + [''] 246s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:438: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 246s argspec = argspec.replace('*','\*') 246s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:456: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 246s signature = self['Signature'].replace('*', '\*') 246s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 247s Setting up r-base-core (4.5.2-1ubuntu2) ... 247s Creating config file /etc/R/Renviron with new version 247s Setting up r-cran-lattice (0.22-7-1) ... 247s Setting up r-cran-modeltools (0.2-24-1) ... 247s Setting up python3-rpy2 (3.6.4-2) ... 247s Setting up r-cran-codetools (0.2-20-1build1) ... 247s Setting up r-cran-matrixstats (1.5.0-1) ... 247s Setting up r-cran-mass (7.3-65-1) ... 247s Setting up r-cran-mvtnorm (1.3-3-1) ... 247s Setting up r-cran-zoo (1.8-15-1) ... 247s Setting up r-cran-matrix (1.7-4-1) ... 247s Setting up r-cran-libcoin (1.0-10-1) ... 247s Setting up r-cran-sandwich (3.1-1-1) ... 247s Setting up r-cran-survival (3.8-3-1) ... 247s Setting up r-cran-th.data (1.1-5-1) ... 247s Setting up r-cran-multcomp (1.4-29-1) ... 247s Setting up r-cran-coin (1.4-3-1) ... 247s Setting up python3-fonttools (4.61.1-3) ... 247s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 248s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 249s Setting up lefse (1.1.2-2) ... 249s Processing triggers for libc-bin (2.42-2ubuntu4) ... 249s Processing triggers for man-db (2.13.1-1) ... 249s Processing triggers for install-info (7.2-5) ... 250s autopkgtest [03:24:24]: test environment configured for cross building 250s autopkgtest [03:24:24]: test run-unit-test: [----------------------- 252s lefse_run.py comparative pass 252s lefse2circlader.py comparative pass 253s lefse_plot_cladogram.py comparative fail. Instead, I get: 253s /usr/lib/python3/dist-packages/pyparsing/core.py:5637: SyntaxWarning: 'return' in a 'finally' block 253s return f"{type(self).__name__}: {retString}" 253s usage: lefse_plot_cladogram.py [-h] [--clade_sep CLADE_SEP] 253s [--max_lev MAX_LEV] 253s [--max_point_size MAX_POINT_SIZE] 253s [--min_point_size MIN_POINT_SIZE] 253s [--point_edge_width MARKEREDGEWIDTH] 253s [--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH] 253s [--parents_connector_width PARENTS_CONNECTOR_WIDTH] 253s [--radial_start_lev RADIAL_START_LEV] 253s [--labeled_start_lev LABELED_START_LEV] 253s [--labeled_stop_lev LABELED_STOP_LEV] 253s [--abrv_start_lev ABRV_START_LEV] 253s [--abrv_stop_lev ABRV_STOP_LEV] 253s [--expand_void_lev EXPAND_VOID_LEV] 253s [--class_legend_vis CLASS_LEGEND_VIS] 253s [--colored_connector COLORED_CONNECTORS] 253s [--alpha ALPHA] [--title TITLE] 253s [--sub_clade SUB_CLADE] 253s [--title_font_size TITLE_FONT_SIZE] 253s [--right_space_prop R_PROP] 253s [--left_space_prop L_PROP] 253s [--label_font_size LABEL_FONT_SIZE] 253s [--background_color {k,w}] 253s [--colored_labels {0,1}] 253s [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] 253s [--dpi DPI] [--format {png,svg,pdf}] 253s [--all_feats ALL_FEATS] 253s INPUT_FILE OUTPUT_FILE 253s 253s Cladoplot 253s 253s positional arguments: 253s INPUT_FILE tab delimited input file 253s OUTPUT_FILE the file for the output image 253s 253s options: 253s -h, --help show this help message and exit 253s --clade_sep CLADE_SEP 253s --max_lev MAX_LEV 253s --max_point_size MAX_POINT_SIZE 253s --min_point_size MIN_POINT_SIZE 253s --point_edge_width MARKEREDGEWIDTH 253s --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH 253s --parents_connector_width PARENTS_CONNECTOR_WIDTH 253s --radial_start_lev RADIAL_START_LEV 253s --labeled_start_lev LABELED_START_LEV 253s --labeled_stop_lev LABELED_STOP_LEV 253s --abrv_start_lev ABRV_START_LEV 253s --abrv_stop_lev ABRV_STOP_LEV 253s --expand_void_lev EXPAND_VOID_LEV 253s --class_legend_vis CLASS_LEGEND_VIS 253s --colored_connector COLORED_CONNECTORS 253s --alpha ALPHA 253s --title TITLE 253s --sub_clade SUB_CLADE 253s --title_font_size TITLE_FONT_SIZE 253s --right_space_prop R_PROP 253s --left_space_prop L_PROP 253s --label_font_size LABEL_FONT_SIZE 253s --background_color {k,w} 253s set the color of the background 253s --colored_labels {0,1} 253s draw the label with class color (1) or in black (0) 253s --class_legend_font_size CLASS_LEGEND_FONT_SIZE 253s --dpi DPI 253s --format {png,svg,pdf} 253s the format for the output file 253s --all_feats ALL_FEATS 254s autopkgtest [03:24:28]: test run-unit-test: -----------------------] 254s run-unit-test FAIL non-zero exit status 1 254s autopkgtest [03:24:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 254s autopkgtest [03:24:28]: @@@@@@@@@@@@@@@@@@@@ summary 254s run-unit-test FAIL non-zero exit status 1