0s autopkgtest [11:24:30]: starting date and time: 2025-12-03 11:24:30+0000 0s autopkgtest [11:24:30]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:24:30]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h5qgjsm_/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade bedtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-10.secgroup --name adt-resolute-i386-bedtools-20251203-112429-juju-7f2275-prod-proposed-migration-environment-20-4d6b7dc4-32e3-4525-b18a-ab48eec7500c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-bedtools-20251203-112429-juju-7f2275-prod-proposed-migration-environment-20-4d6b7dc4-32e3-4525-b18a-ab48eec7500c from image adt/ubuntu-resolute-amd64-server-20251203.img (UUID c6e78f39-c16c-48bb-9815-0096f6be052e)... 46s autopkgtest [11:25:16]: testbed dpkg architecture: amd64 46s autopkgtest [11:25:16]: testbed apt version: 3.1.12 47s autopkgtest [11:25:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [11:25:17]: testbed release detected to be: None 48s autopkgtest [11:25:18]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [981 kB] 48s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.2 kB] 48s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [147 kB] 48s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [158 kB] 48s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [205 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6168 B] 48s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 48s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [343 kB] 48s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [742 kB] 48s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.3 kB] 48s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5224 B] 49s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.5 kB] 49s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [828 B] 49s Fetched 2774 kB in 1s (3453 kB/s) 50s Reading package lists... 50s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 50s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 51s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s The following packages will be upgraded: 51s libpython3-stdlib python3 python3-gdbm python3-minimal 51s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 72.9 kB of archives. 51s After this operation, 2048 B of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.9-2 [28.1 kB] 51s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.9-2 [23.0 kB] 51s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.9-2 [10.8 kB] 51s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.13.9-2 [11.0 kB] 51s dpkg-preconfigure: unable to re-open stdin: No such file or directory 51s Fetched 72.9 kB in 0s (0 B/s) 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 52s Preparing to unpack .../python3-minimal_3.13.9-2_amd64.deb ... 52s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 52s Setting up python3-minimal (3.13.9-2) ... 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 52s Preparing to unpack .../python3_3.13.9-2_amd64.deb ... 52s running python pre-rtupdate hooks for python3.13... 52s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 52s Preparing to unpack .../libpython3-stdlib_3.13.9-2_amd64.deb ... 52s Unpacking libpython3-stdlib:amd64 (3.13.9-2) over (3.13.7-1) ... 52s Preparing to unpack .../python3-gdbm_3.13.9-2_amd64.deb ... 52s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 52s Setting up python3-gdbm (3.13.9-2) ... 52s Setting up libpython3-stdlib:amd64 (3.13.9-2) ... 52s Setting up python3 (3.13.9-2) ... 52s running python rtupdate hooks for python3.13... 52s running python post-rtupdate hooks for python3.13... 52s Processing triggers for man-db (2.13.1-1) ... 52s autopkgtest [11:25:22]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Solving dependencies... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [11:25:25]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 13:34:17 UTC 2025 55s autopkgtest [11:25:25]: @@@@@@@@@@@@@@@@@@@@ apt-source bedtools 59s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bedtools 2.31.1+dfsg-2 (dsc) [2230 B] 59s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bedtools 2.31.1+dfsg-2 (tar) [14.5 MB] 59s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bedtools 2.31.1+dfsg-2 (diff) [14.5 kB] 59s gpgv: Signature made Mon Dec 4 19:20:23 2023 UTC 59s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 59s gpgv: issuer "emollier@debian.org" 59s gpgv: Can't check signature: No public key 59s dpkg-source: warning: cannot verify inline signature for ./bedtools_2.31.1+dfsg-2.dsc: no acceptable signature found 60s autopkgtest [11:25:30]: testing package bedtools version 2.31.1+dfsg-2 60s autopkgtest [11:25:30]: build not needed 63s autopkgtest [11:25:33]: test run-unit-test: preparing testbed 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Solving dependencies... 64s Some packages could not be installed. This may mean that you have 64s requested an impossible situation or if you are using the unstable 64s distribution that some required packages have not yet been created 64s or been moved out of Incoming. 64s The following information may help to resolve the situation: 64s 64s The following packages have unmet dependencies: 64s satisfy:command-line : Depends: bedtools:i386 but it is not installable 64s Depends: bedtools-test but it is not going to be installed 64s Depends: tabix but it is not going to be installed 64s E: Unable to satisfy dependencies. Reached two conflicting decisions: 64s 1. satisfy:command-line:amd64=1 is selected for install 64s 2. satisfy:command-line:amd64 Depends bedtools:i386 64s but none of the choices are installable: 64s [no choices] 64s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Solving dependencies... 64s Some packages could not be installed. This may mean that you have 64s requested an impossible situation or if you are using the unstable 64s distribution that some required packages have not yet been created 64s or been moved out of Incoming. 64s The following information may help to resolve the situation: 64s 64s The following packages have unmet dependencies: 65s satisfy:command-line : Depends: bedtools:i386 but it is not installable 65s Depends: bedtools-test but it is not going to be installed 65s Depends: tabix but it is not going to be installed 65s E: Unable to satisfy dependencies. Reached two conflicting decisions: 65s 1. satisfy:command-line:amd64=1 is selected for install 65s 2. satisfy:command-line:amd64 Depends bedtools:i386 65s but none of the choices are installable: 65s [no choices] 65s run-unit-test FAIL badpkg 65s blame: bedtools 65s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 65s autopkgtest [11:25:35]: @@@@@@@@@@@@@@@@@@@@ summary 65s run-unit-test FAIL badpkg 65s blame: bedtools 65s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.