0s autopkgtest [19:59:41]: starting date and time: 2026-01-23 19:59:41+0000 0s autopkgtest [19:59:41]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [19:59:41]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0ufy7ukg/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:graphviz,src:apbs,src:binutils,src:ccls,src:cp2k,src:createrepo-c,src:gcc-11,src:gcc-12,src:gcc-13,src:gcc-14,src:gcc-15,src:gcc-snapshot,src:gdm3,src:hkl,src:hmmer,src:ktimetracker,src:libixion,src:liborcus,src:libpeas,src:libpeas2,src:libreoffice,src:libsndfile,src:libzstd,src:link-grammar,src:mosquitto,src:orthanc-python,src:psychopy,src:pyside2,src:python3-defaults,src:rumur,src:systemd,src:tifffile,src:vim --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=graphviz/14.1.1-2ubuntu3 apbs/3.4.1-7build1 binutils/2.45.50.20260119-1ubuntu1 ccls/0.20250815-0ubuntu1 cp2k/2025.2-3 createrepo-c/1.2.1-2build1 gcc-11/11.5.0-8ubuntu1 gcc-12/12.5.0-7ubuntu1 gcc-13/13.4.0-5ubuntu1 gcc-14/14.3.0-11ubuntu1 gcc-15/15.2.0-12ubuntu1 gcc-snapshot/1:20260121-1ubuntu1 gdm3/50~alpha.1-0ubuntu1 hkl/5.1.4-1 hmmer/3.4+dfsg-3 ktimetracker/4:6.0.0-1build1 libixion/0.20.0-6build1 liborcus/0.21.0-2build1 libpeas/1.36.0-8build1 libpeas2/2.2.0-2build1 libreoffice/4:25.8.4~rc2-0ubuntu2 libsndfile/1.2.2-4 libzstd/1.5.7+dfsg-3 link-grammar/5.13.0+dfsg-1build1 mosquitto/2.0.22-5 orthanc-python/7.0+ds-1build1 psychopy/2023.2.4+dfsg-4 pyside2/5.15.18-1 python3-defaults/3.14.2-1 rumur/2025.08.31-1 systemd/259-1ubuntu3 tifffile/20260114-1 vim/2:9.1.1882-1ubuntu2' -- lxd -r lxd-armhf-10.145.243.229 lxd-armhf-10.145.243.229:autopkgtest/ubuntu/resolute/armhf 24s autopkgtest [20:00:05]: testbed dpkg architecture: armhf 26s autopkgtest [20:00:07]: testbed apt version: 3.1.13 31s autopkgtest [20:00:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [20:00:14]: testbed release detected to be: None 41s autopkgtest [20:00:22]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 44s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 44s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 44s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 44s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 44s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [97.3 kB] 44s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1018 kB] 44s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [109 kB] 44s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [820 kB] 44s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7912 B] 44s Get:12 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1406 kB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 45s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 45s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 46s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 49s Fetched 42.4 MB in 5s (7957 kB/s) 50s Reading package lists... 56s autopkgtest [20:00:37]: upgrading testbed (apt dist-upgrade and autopurge) 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s Calculating upgrade... 60s The following packages were automatically installed and are no longer required: 60s libpython3.13-minimal libpython3.13-stdlib libsframe2 python3.13 60s python3.13-minimal 60s Use 'apt autoremove' to remove them. 60s The following NEW packages will be installed: 60s libpython3.14-minimal libpython3.14-stdlib libsframe3 python3.14 60s python3.14-minimal 60s The following packages will be upgraded: 60s binutils binutils-arm-linux-gnueabihf binutils-common dhcpcd-base 60s gcc-15-base libatomic1 libbinutils libctf-nobfd0 libctf0 libgcc-s1 60s libnss-systemd libpam-systemd libplymouth5 libpython3-stdlib libstdc++6 60s libsystemd-shared libsystemd0 libtasn1-6 libudev1 libzstd1 plymouth 60s plymouth-theme-ubuntu-text python3 python3-gdbm python3-jaraco.context 60s python3-minimal systemd systemd-cryptsetup systemd-resolved systemd-sysv 60s systemd-userdbd udev vim-common vim-tiny xxd zstd 60s 36 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 20.4 MB of archives. 60s After this operation, 22.7 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 60s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 61s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libzstd1 armhf 1.5.7+dfsg-3 [275 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 61s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf systemd-userdbd armhf 259-1ubuntu3 [52.0 kB] 61s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libnss-systemd armhf 259-1ubuntu3 [277 kB] 61s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libsystemd0 armhf 259-1ubuntu3 [517 kB] 61s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf systemd-sysv armhf 259-1ubuntu3 [9246 B] 61s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf systemd-resolved armhf 259-1ubuntu3 [292 kB] 61s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpam-systemd armhf 259-1ubuntu3 [252 kB] 61s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libsystemd-shared armhf 259-1ubuntu3 [2430 kB] 61s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf systemd armhf 259-1ubuntu3 [3156 kB] 61s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf systemd-cryptsetup armhf 259-1ubuntu3 [126 kB] 61s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf udev armhf 259-1ubuntu3 [1492 kB] 61s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libudev1 armhf 259-1ubuntu3 [204 kB] 61s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf gcc-15-base armhf 15.2.0-12ubuntu1 [59.6 kB] 61s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libstdc++6 armhf 15.2.0-12ubuntu1 [731 kB] 61s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libatomic1 armhf 15.2.0-12ubuntu1 [7824 B] 61s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libgcc-s1 armhf 15.2.0-12ubuntu1 [40.5 kB] 61s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf dhcpcd-base armhf 1:10.3.0-7 [194 kB] 61s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libtasn1-6 armhf 4.21.0-2 [38.5 kB] 61s Get:26 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf vim-tiny armhf 2:9.1.1882-1ubuntu2 [727 kB] 61s Get:27 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf vim-common all 2:9.1.1882-1ubuntu2 [402 kB] 61s Get:28 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf xxd armhf 2:9.1.1882-1ubuntu2 [70.2 kB] 61s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libplymouth5 armhf 24.004.60+git20250831.4a3c171d-0ubuntu5 [147 kB] 61s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth-theme-ubuntu-text armhf 24.004.60+git20250831.4a3c171d-0ubuntu5 [9996 B] 61s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth armhf 24.004.60+git20250831.4a3c171d-0ubuntu5 [146 kB] 61s Get:32 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 61s Get:33 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libctf0 armhf 2.45.50.20260119-1ubuntu1 [75.7 kB] 61s Get:34 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libctf-nobfd0 armhf 2.45.50.20260119-1ubuntu1 [78.3 kB] 61s Get:35 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.45.50.20260119-1ubuntu1 [1034 kB] 61s Get:36 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libbinutils armhf 2.45.50.20260119-1ubuntu1 [404 kB] 61s Get:37 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf binutils armhf 2.45.50.20260119-1ubuntu1 [3264 B] 61s Get:38 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf binutils-common armhf 2.45.50.20260119-1ubuntu1 [222 kB] 61s Get:39 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libsframe3 armhf 2.45.50.20260119-1ubuntu1 [16.4 kB] 61s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf python3-jaraco.context all 6.0.1-2 [8198 B] 62s Get:41 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf zstd armhf 1.5.7+dfsg-3 [728 kB] 62s Fetched 20.4 MB in 2s (11.6 MB/s) 62s Selecting previously unselected package libpython3.14-minimal:armhf. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 62s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 62s Selecting previously unselected package python3.14-minimal. 62s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking python3.14-minimal (3.14.2-1) ... 62s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 62s Setting up python3.14-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 64s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 64s Setting up python3-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3_3.14.2-1_armhf.deb ... 64s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 64s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_armhf.deb ... 64s Unpacking libzstd1:armhf (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 64s Setting up libzstd1:armhf (1.5.7+dfsg-3) ... 64s Selecting previously unselected package libpython3.14-stdlib:armhf. 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66828 files and directories currently installed.) 64s Preparing to unpack .../0-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 64s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 65s Selecting previously unselected package python3.14. 65s Preparing to unpack .../1-python3.14_3.14.2-1_armhf.deb ... 65s Unpacking python3.14 (3.14.2-1) ... 65s Preparing to unpack .../2-libpython3-stdlib_3.14.2-1_armhf.deb ... 65s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.9-3) ... 65s Preparing to unpack .../3-systemd-userdbd_259-1ubuntu3_armhf.deb ... 65s Unpacking systemd-userdbd (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../4-libnss-systemd_259-1ubuntu3_armhf.deb ... 65s Unpacking libnss-systemd:armhf (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../5-libsystemd0_259-1ubuntu3_armhf.deb ... 65s Unpacking libsystemd0:armhf (259-1ubuntu3) over (259-1ubuntu2) ... 65s Setting up libsystemd0:armhf (259-1ubuntu3) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 65s Preparing to unpack .../systemd-sysv_259-1ubuntu3_armhf.deb ... 65s Unpacking systemd-sysv (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../systemd-resolved_259-1ubuntu3_armhf.deb ... 65s Unpacking systemd-resolved (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../libpam-systemd_259-1ubuntu3_armhf.deb ... 65s Unpacking libpam-systemd:armhf (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../libsystemd-shared_259-1ubuntu3_armhf.deb ... 65s Unpacking libsystemd-shared:armhf (259-1ubuntu3) over (259-1ubuntu2) ... 65s Setting up libsystemd-shared:armhf (259-1ubuntu3) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 65s Preparing to unpack .../systemd_259-1ubuntu3_armhf.deb ... 65s Unpacking systemd (259-1ubuntu3) over (259-1ubuntu2) ... 65s Preparing to unpack .../systemd-cryptsetup_259-1ubuntu3_armhf.deb ... 65s Unpacking systemd-cryptsetup (259-1ubuntu3) over (259-1ubuntu2) ... 66s Preparing to unpack .../udev_259-1ubuntu3_armhf.deb ... 66s Unpacking udev (259-1ubuntu3) over (259-1ubuntu2) ... 66s Preparing to unpack .../libudev1_259-1ubuntu3_armhf.deb ... 66s Unpacking libudev1:armhf (259-1ubuntu3) over (259-1ubuntu2) ... 66s Setting up libudev1:armhf (259-1ubuntu3) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 66s Preparing to unpack .../gcc-15-base_15.2.0-12ubuntu1_armhf.deb ... 66s Unpacking gcc-15-base:armhf (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 66s Setting up gcc-15-base:armhf (15.2.0-12ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 66s Preparing to unpack .../libstdc++6_15.2.0-12ubuntu1_armhf.deb ... 66s Unpacking libstdc++6:armhf (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 66s Setting up libstdc++6:armhf (15.2.0-12ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 66s Preparing to unpack .../libatomic1_15.2.0-12ubuntu1_armhf.deb ... 66s Unpacking libatomic1:armhf (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 66s Preparing to unpack .../libgcc-s1_15.2.0-12ubuntu1_armhf.deb ... 66s Unpacking libgcc-s1:armhf (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 66s Setting up libgcc-s1:armhf (15.2.0-12ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67259 files and directories currently installed.) 66s Preparing to unpack .../00-dhcpcd-base_1%3a10.3.0-7_armhf.deb ... 66s Unpacking dhcpcd-base (1:10.3.0-7) over (1:10.3.0-3) ... 66s Preparing to unpack .../01-libtasn1-6_4.21.0-2_armhf.deb ... 66s Unpacking libtasn1-6:armhf (4.21.0-2) over (4.20.0-2ubuntu1) ... 66s Preparing to unpack .../02-vim-tiny_2%3a9.1.1882-1ubuntu2_armhf.deb ... 66s Unpacking vim-tiny (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 66s Preparing to unpack .../03-vim-common_2%3a9.1.1882-1ubuntu2_all.deb ... 66s Unpacking vim-common (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 66s Preparing to unpack .../04-xxd_2%3a9.1.1882-1ubuntu2_armhf.deb ... 66s Unpacking xxd (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 67s Preparing to unpack .../05-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu5_armhf.deb ... 67s Unpacking libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 67s Preparing to unpack .../06-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu5_armhf.deb ... 67s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 67s Preparing to unpack .../07-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu5_armhf.deb ... 67s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 67s Preparing to unpack .../08-python3-gdbm_3.14.2-1_armhf.deb ... 67s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 67s Preparing to unpack .../09-libctf0_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking libctf0:armhf (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Preparing to unpack .../10-libctf-nobfd0_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking libctf-nobfd0:armhf (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Preparing to unpack .../11-binutils-arm-linux-gnueabihf_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking binutils-arm-linux-gnueabihf (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Preparing to unpack .../12-libbinutils_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking libbinutils:armhf (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Preparing to unpack .../13-binutils_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking binutils (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Preparing to unpack .../14-binutils-common_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking binutils-common:armhf (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 67s Selecting previously unselected package libsframe3:armhf. 67s Preparing to unpack .../15-libsframe3_2.45.50.20260119-1ubuntu1_armhf.deb ... 67s Unpacking libsframe3:armhf (2.45.50.20260119-1ubuntu1) ... 67s Preparing to unpack .../16-python3-jaraco.context_6.0.1-2_all.deb ... 67s Unpacking python3-jaraco.context (6.0.1-2) over (6.0.1-1build1) ... 67s Preparing to unpack .../17-zstd_1.5.7+dfsg-3_armhf.deb ... 67s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 67s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 67s Setting up binutils-common:armhf (2.45.50.20260119-1ubuntu1) ... 67s Setting up libsframe3:armhf (2.45.50.20260119-1ubuntu1) ... 67s Setting up libctf-nobfd0:armhf (2.45.50.20260119-1ubuntu1) ... 67s Setting up libnss-systemd:armhf (259-1ubuntu3) ... 67s Setting up systemd (259-1ubuntu3) ... 67s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 67s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 68s Setting up xxd (2:9.1.1882-1ubuntu2) ... 68s Setting up vim-common (2:9.1.1882-1ubuntu2) ... 68s Setting up systemd-cryptsetup (259-1ubuntu3) ... 68s Setting up libatomic1:armhf (15.2.0-12ubuntu1) ... 68s Setting up udev (259-1ubuntu3) ... 69s Setting up dhcpcd-base (1:10.3.0-7) ... 69s Setting up libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 69s Setting up libtasn1-6:armhf (4.21.0-2) ... 69s Setting up python3.14 (3.14.2-1) ... 70s Setting up libbinutils:armhf (2.45.50.20260119-1ubuntu1) ... 70s Setting up zstd (1.5.7+dfsg-3) ... 70s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 70s Setting up systemd-resolved (259-1ubuntu3) ... 71s Could not execute systemctl: at /usr/bin/deb-systemd-invoke line 148. 71s Setting up libctf0:armhf (2.45.50.20260119-1ubuntu1) ... 71s Setting up systemd-userdbd (259-1ubuntu3) ... 72s Setting up systemd-sysv (259-1ubuntu3) ... 72s Setting up python3-gdbm (3.14.2-1) ... 72s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 72s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 72s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 73s Setting up python3 (3.14.2-1) ... 73s Setting up vim-tiny (2:9.1.1882-1ubuntu2) ... 73s Setting up libpam-systemd:armhf (259-1ubuntu3) ... 73s Setting up binutils-arm-linux-gnueabihf (2.45.50.20260119-1ubuntu1) ... 73s Setting up python3-jaraco.context (6.0.1-2) ... 73s Setting up binutils (2.45.50.20260119-1ubuntu1) ... 73s Processing triggers for dbus (1.16.2-2ubuntu2) ... 73s Processing triggers for shared-mime-info (2.4-5build2) ... 74s Processing triggers for procps (2:4.0.4-9ubuntu1) ... 74s Processing triggers for initramfs-tools (0.150ubuntu7) ... 74s Processing triggers for libc-bin (2.42-2ubuntu4) ... 74s Processing triggers for man-db (2.13.1-1) ... 75s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 76s Processing triggers for initramfs-tools (0.150ubuntu7) ... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Solving dependencies... 79s The following packages will be REMOVED: 79s libpython3.13-minimal* libpython3.13-stdlib* libsframe2* python3.13* 79s python3.13-minimal* 79s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded. 79s After this operation, 21.4 MB disk space will be freed. 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67256 files and directories currently installed.) 79s Removing python3.13 (3.13.11-1) ... 79s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 79s Removing python3.13-minimal (3.13.11-1) ... 80s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 80s Removing libsframe2:armhf (2.45.50.20251209-1ubuntu1) ... 80s Processing triggers for systemd (259-1ubuntu3) ... 80s Processing triggers for man-db (2.13.1-1) ... 81s Processing triggers for libc-bin (2.42-2ubuntu4) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66512 files and directories currently installed.) 81s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 81s Purging configuration files for python3.13-minimal (3.13.11-1) ... 83s autopkgtest [20:01:04]: rebooting testbed after setup commands that affected boot 126s autopkgtest [20:01:47]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 152s autopkgtest [20:02:13]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 167s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (dsc) [3330 B] 167s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (tar) [8886 kB] 167s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (diff) [29.9 kB] 167s gpgv: Signature made Mon Dec 29 15:32:14 2025 UTC 167s gpgv: using RSA key 406220C8B8552802378CCE411F5C7A8B45564314 167s gpgv: issuer "bage@debian.org" 167s gpgv: Can't check signature: No public key 167s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-8.1.dsc: no acceptable signature found 168s autopkgtest [20:02:29]: testing package snakemake version 7.32.4-8.1 170s autopkgtest [20:02:31]: build not needed 173s autopkgtest [20:02:34]: test command1: preparing testbed 175s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Solving dependencies... 176s The following NEW packages will be installed: 176s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 176s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 176s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 176s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 176s python3-connection-pool python3-datrie python3-decorator python3-docutils 176s python3-dpath python3-fastjsonschema python3-git python3-gitdb 176s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 176s python3-platformdirs python3-psutil python3-pulp python3-retry 176s python3-roman-numerals python3-smart-open python3-smmap python3-stopit 176s python3-tabulate python3-throttler python3-toposort python3-traitlets 176s python3-wrapt python3-yte sgml-base snakemake xml-core 176s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 13.7 MB of archives. 176s After this operation, 54.5 MB of additional disk space will be used. 176s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 177s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 177s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 177s Get:4 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcoinutils3v5 armhf 2.11.12+ds-1 [424 kB] 177s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libosi1v5 armhf 0.108.11+ds-1 [291 kB] 177s Get:6 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libclp1 armhf 1.17.10+ds-1build1 [789 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcgl1 armhf 0.60.9+ds-1build1 [385 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcbc3.1 armhf 2.10.12+ds-1build1 [665 kB] 177s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 177s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19build1 [20.3 kB] 177s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf docutils-common all 0.22.4+dfsg-1 [130 kB] 177s Get:12 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 177s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf liberror-perl all 0.17030-1 [23.5 kB] 177s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf git-man all 1:2.51.0-1ubuntu1 [1179 kB] 177s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf git armhf 1:2.51.0-1ubuntu1 [4649 kB] 177s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 177s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 177s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 177s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-configargparse all 1.7-2 [31.7 kB] 177s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-connection-pool all 0.0.3-2build1 [5792 B] 177s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datrie armhf 0.8.3-2 [195 kB] 177s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 177s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf python3-roman-numerals all 4.1.0-1 [8660 B] 177s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf python3-docutils all 0.22.4+dfsg-1 [439 kB] 178s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dpath all 2.2.0-2 [20.3 kB] 178s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 178s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smmap all 6.0.0-1build1 [20.7 kB] 178s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gitdb all 4.0.12-1 [46.4 kB] 178s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-git all 3.1.46-1 [149 kB] 178s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanfriendly all 10.0-6build1 [70.9 kB] 178s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 178s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 178s Get:33 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.9.1-1 [28.9 kB] 178s Get:34 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.10.4-1 [39.2 kB] 178s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plac all 1.4.3-2 [63.2 kB] 178s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf python3-psutil armhf 7.1.0-1ubuntu1 [189 kB] 178s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-cbc armhf 2.10.12+ds-1build1 [14.3 kB] 178s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 178s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-retry all 0.9.2-5 [6160 B] 178s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf python3-wrapt armhf 1.17.3-3 [38.2 kB] 178s Get:41 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smart-open all 7.5.0-1 [56.9 kB] 178s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-stopit all 1.1.2-3 [12.8 kB] 178s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tabulate all 0.9.0-1build1 [45.4 kB] 178s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-throttler all 1.2.2-4ubuntu1 [7758 B] 178s Get:45 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-toposort all 1.10-2 [6348 B] 178s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-yte all 1.5.4-1 [12.0 kB] 178s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf snakemake all 7.32.4-8.1 [275 kB] 178s Fetched 13.7 MB in 2s (8983 kB/s) 178s Selecting previously unselected package libblas3:armhf. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66512 files and directories currently installed.) 178s Preparing to unpack .../00-libblas3_3.12.1-7ubuntu1_armhf.deb ... 178s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 178s Selecting previously unselected package libgfortran5:armhf. 178s Preparing to unpack .../01-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 178s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 179s Selecting previously unselected package liblapack3:armhf. 179s Preparing to unpack .../02-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 179s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 179s Selecting previously unselected package coinor-libcoinutils3v5:armhf. 179s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_armhf.deb ... 179s Unpacking coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 179s Selecting previously unselected package coinor-libosi1v5:armhf. 179s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_armhf.deb ... 179s Unpacking coinor-libosi1v5:armhf (0.108.11+ds-1) ... 179s Selecting previously unselected package coinor-libclp1:armhf. 179s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1build1_armhf.deb ... 179s Unpacking coinor-libclp1:armhf (1.17.10+ds-1build1) ... 179s Selecting previously unselected package coinor-libcgl1:armhf. 179s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1build1_armhf.deb ... 179s Unpacking coinor-libcgl1:armhf (0.60.9+ds-1build1) ... 179s Selecting previously unselected package coinor-libcbc3.1:armhf. 179s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1build1_armhf.deb ... 179s Unpacking coinor-libcbc3.1:armhf (2.10.12+ds-1build1) ... 179s Selecting previously unselected package sgml-base. 179s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 179s Unpacking sgml-base (1.31+nmu1) ... 179s Selecting previously unselected package xml-core. 179s Preparing to unpack .../09-xml-core_0.19build1_all.deb ... 179s Unpacking xml-core (0.19build1) ... 179s Selecting previously unselected package docutils-common. 179s Preparing to unpack .../10-docutils-common_0.22.4+dfsg-1_all.deb ... 179s Unpacking docutils-common (0.22.4+dfsg-1) ... 179s Selecting previously unselected package fonts-glyphicons-halflings. 179s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 179s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 179s Selecting previously unselected package liberror-perl. 179s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 179s Unpacking liberror-perl (0.17030-1) ... 179s Selecting previously unselected package git-man. 179s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 179s Unpacking git-man (1:2.51.0-1ubuntu1) ... 179s Selecting previously unselected package git. 179s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_armhf.deb ... 179s Unpacking git (1:2.51.0-1ubuntu1) ... 179s Selecting previously unselected package libdatrie1:armhf. 179s Preparing to unpack .../15-libdatrie1_0.2.14-1_armhf.deb ... 179s Unpacking libdatrie1:armhf (0.2.14-1) ... 179s Selecting previously unselected package libjs-bootstrap. 179s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 179s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 179s Selecting previously unselected package libjs-jquery. 179s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 180s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 180s Selecting previously unselected package python3-configargparse. 180s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 180s Unpacking python3-configargparse (1.7-2) ... 180s Selecting previously unselected package python3-connection-pool. 180s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 180s Unpacking python3-connection-pool (0.0.3-2build1) ... 180s Selecting previously unselected package python3-datrie. 180s Preparing to unpack .../20-python3-datrie_0.8.3-2_armhf.deb ... 180s Unpacking python3-datrie (0.8.3-2) ... 180s Selecting previously unselected package python3-decorator. 180s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 180s Unpacking python3-decorator (5.2.1-2) ... 180s Selecting previously unselected package python3-roman-numerals. 180s Preparing to unpack .../22-python3-roman-numerals_4.1.0-1_all.deb ... 180s Unpacking python3-roman-numerals (4.1.0-1) ... 180s Selecting previously unselected package python3-docutils. 180s Preparing to unpack .../23-python3-docutils_0.22.4+dfsg-1_all.deb ... 180s Unpacking python3-docutils (0.22.4+dfsg-1) ... 180s Selecting previously unselected package python3-dpath. 180s Preparing to unpack .../24-python3-dpath_2.2.0-2_all.deb ... 180s Unpacking python3-dpath (2.2.0-2) ... 180s Selecting previously unselected package python3-fastjsonschema. 180s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 180s Unpacking python3-fastjsonschema (2.21.1-1) ... 180s Selecting previously unselected package python3-smmap. 180s Preparing to unpack .../26-python3-smmap_6.0.0-1build1_all.deb ... 180s Unpacking python3-smmap (6.0.0-1build1) ... 180s Selecting previously unselected package python3-gitdb. 180s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 180s Unpacking python3-gitdb (4.0.12-1) ... 180s Selecting previously unselected package python3-git. 180s Preparing to unpack .../28-python3-git_3.1.46-1_all.deb ... 180s Unpacking python3-git (3.1.46-1) ... 180s Selecting previously unselected package python3-humanfriendly. 180s Preparing to unpack .../29-python3-humanfriendly_10.0-6build1_all.deb ... 180s Unpacking python3-humanfriendly (10.0-6build1) ... 180s Selecting previously unselected package python3-platformdirs. 180s Preparing to unpack .../30-python3-platformdirs_4.5.1-1_all.deb ... 180s Unpacking python3-platformdirs (4.5.1-1) ... 180s Selecting previously unselected package python3-traitlets. 180s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 180s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 180s Selecting previously unselected package python3-jupyter-core. 180s Preparing to unpack .../32-python3-jupyter-core_5.9.1-1_all.deb ... 180s Unpacking python3-jupyter-core (5.9.1-1) ... 180s Selecting previously unselected package python3-nbformat. 180s Preparing to unpack .../33-python3-nbformat_5.10.4-1_all.deb ... 180s Unpacking python3-nbformat (5.10.4-1) ... 180s Selecting previously unselected package python3-plac. 180s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 180s Unpacking python3-plac (1.4.3-2) ... 180s Selecting previously unselected package python3-psutil. 180s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_armhf.deb ... 180s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 180s Selecting previously unselected package coinor-cbc. 180s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1build1_armhf.deb ... 180s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 180s Selecting previously unselected package python3-pulp. 180s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 180s Unpacking python3-pulp (2.7.0+dfsg-4) ... 180s Selecting previously unselected package python3-retry. 180s Preparing to unpack .../38-python3-retry_0.9.2-5_all.deb ... 180s Unpacking python3-retry (0.9.2-5) ... 180s Selecting previously unselected package python3-wrapt. 180s Preparing to unpack .../39-python3-wrapt_1.17.3-3_armhf.deb ... 180s Unpacking python3-wrapt (1.17.3-3) ... 180s Selecting previously unselected package python3-smart-open. 180s Preparing to unpack .../40-python3-smart-open_7.5.0-1_all.deb ... 180s Unpacking python3-smart-open (7.5.0-1) ... 180s Selecting previously unselected package python3-stopit. 180s Preparing to unpack .../41-python3-stopit_1.1.2-3_all.deb ... 180s Unpacking python3-stopit (1.1.2-3) ... 181s Selecting previously unselected package python3-tabulate. 181s Preparing to unpack .../42-python3-tabulate_0.9.0-1build1_all.deb ... 181s Unpacking python3-tabulate (0.9.0-1build1) ... 181s Selecting previously unselected package python3-throttler. 181s Preparing to unpack .../43-python3-throttler_1.2.2-4ubuntu1_all.deb ... 181s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 181s Selecting previously unselected package python3-toposort. 181s Preparing to unpack .../44-python3-toposort_1.10-2_all.deb ... 181s Unpacking python3-toposort (1.10-2) ... 181s Selecting previously unselected package python3-yte. 181s Preparing to unpack .../45-python3-yte_1.5.4-1_all.deb ... 181s Unpacking python3-yte (1.5.4-1) ... 181s Selecting previously unselected package snakemake. 181s Preparing to unpack .../46-snakemake_7.32.4-8.1_all.deb ... 181s Unpacking snakemake (7.32.4-8.1) ... 181s Setting up python3-toposort (1.10-2) ... 181s Setting up python3-configargparse (1.7-2) ... 181s Setting up libdatrie1:armhf (0.2.14-1) ... 181s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 181s Setting up python3-tabulate (0.9.0-1build1) ... 181s Setting up python3-plac (1.4.3-2) ... 181s Setting up python3-platformdirs (4.5.1-1) ... 182s Setting up python3-psutil (7.1.0-1ubuntu1) ... 182s Setting up liberror-perl (0.17030-1) ... 182s Setting up python3-decorator (5.2.1-2) ... 182s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 182s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 182s Setting up python3-humanfriendly (10.0-6build1) ... 182s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 182s return super(MockedProgram, self).__exit__(*args, **kw) 182s Setting up python3-dpath (2.2.0-2) ... 183s Setting up python3-connection-pool (0.0.3-2build1) ... 183s Setting up python3-wrapt (1.17.3-3) ... 183s Setting up python3-throttler (1.2.2-4ubuntu1) ... 183s Setting up python3-retry (0.9.2-5) ... 183s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 183s Setting up python3-fastjsonschema (2.21.1-1) ... 183s Setting up python3-stopit (1.1.2-3) ... 184s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 184s Setting up python3-roman-numerals (4.1.0-1) ... 184s Setting up git-man (1:2.51.0-1ubuntu1) ... 184s Setting up sgml-base (1.31+nmu1) ... 184s Setting up python3-datrie (0.8.3-2) ... 184s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 184s Setting up python3-smmap (6.0.0-1build1) ... 184s Setting up python3-jupyter-core (5.9.1-1) ... 184s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 184s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 184s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 184s Setting up python3-smart-open (7.5.0-1) ... 185s Setting up python3-nbformat (5.10.4-1) ... 185s Setting up python3-gitdb (4.0.12-1) ... 185s Setting up python3-yte (1.5.4-1) ... 185s Setting up coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 185s Setting up git (1:2.51.0-1ubuntu1) ... 185s Setting up coinor-libosi1v5:armhf (0.108.11+ds-1) ... 185s Setting up xml-core (0.19build1) ... 185s Setting up coinor-libclp1:armhf (1.17.10+ds-1build1) ... 185s Setting up python3-git (3.1.46-1) ... 186s Setting up coinor-libcgl1:armhf (0.60.9+ds-1build1) ... 186s Setting up coinor-libcbc3.1:armhf (2.10.12+ds-1build1) ... 186s Setting up coinor-cbc (2.10.12+ds-1build1) ... 186s Setting up python3-pulp (2.7.0+dfsg-4) ... 186s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. 186s otherwise be interpreted by the Tcl shell: \ $ " [ 186s Processing triggers for libc-bin (2.42-2ubuntu4) ... 186s Processing triggers for man-db (2.13.1-1) ... 187s Processing triggers for sgml-base (1.31+nmu1) ... 187s Setting up docutils-common (0.22.4+dfsg-1) ... 187s Processing triggers for sgml-base (1.31+nmu1) ... 187s Setting up python3-docutils (0.22.4+dfsg-1) ... 187s Setting up snakemake (7.32.4-8.1) ... 196s autopkgtest [20:02:57]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 196s autopkgtest [20:02:57]: test command1: [----------------------- 199s Building DAG of jobs... 199s Using shell: /usr/bin/bash 199s Provided cores: 1 (use --cores to define parallelism) 199s Rules claiming more threads will be scaled down. 199s Job stats: 199s job count 199s ----- ------- 199s a 1 199s total 1 199s 199s Select jobs to execute... 199s 199s [Fri Jan 23 20:03:00 2026] 199s rule a: 199s output: test.out 199s jobid: 0 199s reason: Missing output files: test.out 199s resources: tmpdir=/tmp 199s 199s [Fri Jan 23 20:03:00 2026] 199s Finished job 0. 199s 1 of 1 steps (100%) done 199s Complete log: .snakemake/log/2026-01-23T200259.387372.snakemake.log 199s bash 200s autopkgtest [20:03:01]: test command1: -----------------------] 204s autopkgtest [20:03:05]: test command1: - - - - - - - - - - results - - - - - - - - - - 204s command1 PASS 208s autopkgtest [20:03:09]: test run-unit-test: preparing testbed 209s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s Solving dependencies... 211s The following NEW packages will be installed: 211s environment-modules fontconfig fontconfig-config fonts-dejavu-core 211s fonts-dejavu-mono glpk-utils graphviz libamd3 libaom3 libcairo2 libcdt6 211s libcgraph8 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libfreetype6 211s libgd3 libglpk40 libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 211s libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-aomdec 211s libheif-plugin-libde265 libheif1 libice6 libimagequant0 libjbig0 211s libjpeg-turbo8 libjpeg8 liblerc4 libltdl7 libpango-1.0-0 libpangocairo-1.0-0 211s libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 211s libsharpyuv0 libsm6 libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 211s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxdot4 libxft2 211s libxpm4 libxrender1 libxss1 libxt6t64 python3-ftputil python3-iniconfig 211s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 211s python3-pluggy python3-pytest python3-pytest-mock python3-pytz 211s python3-requests-mock r-base-core stress tcl8.6 unzip x11-common xdg-utils 211s zip 211s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 54.6 MB of archives. 211s After this operation, 157 MB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 211s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 212s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 213s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf tcl8.6 armhf 8.6.17+dfsg-1 [14.6 kB] 213s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf environment-modules armhf 5.6.1-1 [364 kB] 213s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 213s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 213s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 213s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.4ubuntu1 [38.2 kB] 213s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.4ubuntu1 [116 kB] 213s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.4ubuntu1 [190 kB] 213s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 213s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libsuitesparseconfig7 armhf 1:7.12.1+dfsg-1 [21.4 kB] 213s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf libamd3 armhf 1:7.12.1+dfsg-1 [37.5 kB] 213s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libcolamd3 armhf 1:7.12.1+dfsg-1 [28.2 kB] 213s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-9 [40.4 kB] 213s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libglpk40 armhf 5.0-2 [325 kB] 213s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf glpk-utils armhf 5.0-2 [226 kB] 213s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libcdt6 armhf 14.1.1-2ubuntu3 [17.4 kB] 213s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libcgraph8 armhf 14.1.1-2ubuntu3 [50.5 kB] 213s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libpathplan4 armhf 14.1.1-2ubuntu3 [28.1 kB] 213s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libxdot4 armhf 14.1.1-2ubuntu3 [21.8 kB] 213s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libgvc7 armhf 14.1.1-2ubuntu3 [341 kB] 213s Get:24 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libgvpr2 armhf 14.1.1-2ubuntu3 [117 kB] 213s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 213s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 213s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 213s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 213s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 213s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 213s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libaom3 armhf 3.13.1-2 [1258 kB] 213s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-aomdec armhf 1.21.2-1 [13.0 kB] 213s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libde265-0 armhf 1.0.16-1build1 [159 kB] 213s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-libde265 armhf 1.21.2-1 [13.6 kB] 213s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libheif1 armhf 1.21.2-1 [597 kB] 213s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 213s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 213s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 213s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 213s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 213s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 213s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 213s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 213s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libxpm4 armhf 1:3.5.17-1build3 [31.1 kB] 213s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libgd3 armhf 2.3.3-13ubuntu1 [109 kB] 213s Get:46 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libgvplugin-gd8 armhf 14.1.1-2ubuntu3 [22.7 kB] 213s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 214s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.0-4 [507 kB] 214s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 214s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 214s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.4-1 [217 kB] 214s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.4-1 [45.3 kB] 214s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.4-1 [25.4 kB] 214s Get:54 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf libgvplugin-pango8 armhf 14.1.1-2ubuntu3 [26.3 kB] 214s Get:55 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf graphviz armhf 14.1.1-2ubuntu3 [58.2 kB] 214s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 214s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 214s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 214s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 214s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 214s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 214s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 214s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 214s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 214s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ftputil all 5.1.0-1build1 [41.3 kB] 214s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 214s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 214s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 214s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 214s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 214s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 214s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest-mock all 3.15.1-1 [11.9 kB] 214s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-requests-mock all 1.12.1-4 [17.9 kB] 214s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 214s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 214s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 214s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 215s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf stress armhf 1.0.7-2 [19.9 kB] 216s Preconfiguring packages ... 216s Fetched 54.6 MB in 5s (11.5 MB/s) 216s Selecting previously unselected package python3-numpy-dev:armhf. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69075 files and directories currently installed.) 216s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 216s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 216s Selecting previously unselected package python3-numpy. 216s Preparing to unpack .../01-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 216s Unpacking python3-numpy (1:2.3.5+ds-3) ... 216s Selecting previously unselected package libtcl8.6:armhf. 216s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 216s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 216s Selecting previously unselected package tcl8.6. 216s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_armhf.deb ... 216s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 217s Selecting previously unselected package environment-modules. 217s Preparing to unpack .../04-environment-modules_5.6.1-1_armhf.deb ... 217s Unpacking environment-modules (5.6.1-1) ... 217s Selecting previously unselected package libfreetype6:armhf. 217s Preparing to unpack .../05-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 217s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 217s Selecting previously unselected package fonts-dejavu-mono. 217s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8build1_all.deb ... 217s Unpacking fonts-dejavu-mono (2.37-8build1) ... 217s Selecting previously unselected package fonts-dejavu-core. 217s Preparing to unpack .../07-fonts-dejavu-core_2.37-8build1_all.deb ... 217s Unpacking fonts-dejavu-core (2.37-8build1) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../08-fontconfig-config_2.15.0-2.4ubuntu1_armhf.deb ... 217s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 217s Selecting previously unselected package libfontconfig1:armhf. 217s Preparing to unpack .../09-libfontconfig1_2.15.0-2.4ubuntu1_armhf.deb ... 217s Unpacking libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 217s Selecting previously unselected package fontconfig. 217s Preparing to unpack .../10-fontconfig_2.15.0-2.4ubuntu1_armhf.deb ... 217s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 217s Selecting previously unselected package libgomp1:armhf. 217s Preparing to unpack .../11-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 217s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 217s Selecting previously unselected package libsuitesparseconfig7:armhf. 217s Preparing to unpack .../12-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_armhf.deb ... 217s Unpacking libsuitesparseconfig7:armhf (1:7.12.1+dfsg-1) ... 217s Selecting previously unselected package libamd3:armhf. 217s Preparing to unpack .../13-libamd3_1%3a7.12.1+dfsg-1_armhf.deb ... 217s Unpacking libamd3:armhf (1:7.12.1+dfsg-1) ... 217s Selecting previously unselected package libcolamd3:armhf. 217s Preparing to unpack .../14-libcolamd3_1%3a7.12.1+dfsg-1_armhf.deb ... 217s Unpacking libcolamd3:armhf (1:7.12.1+dfsg-1) ... 217s Selecting previously unselected package libltdl7:armhf. 217s Preparing to unpack .../15-libltdl7_2.5.4-9_armhf.deb ... 217s Unpacking libltdl7:armhf (2.5.4-9) ... 217s Selecting previously unselected package libglpk40:armhf. 218s Preparing to unpack .../16-libglpk40_5.0-2_armhf.deb ... 218s Unpacking libglpk40:armhf (5.0-2) ... 218s Selecting previously unselected package glpk-utils. 218s Preparing to unpack .../17-glpk-utils_5.0-2_armhf.deb ... 218s Unpacking glpk-utils (5.0-2) ... 218s Selecting previously unselected package libcdt6:armhf. 218s Preparing to unpack .../18-libcdt6_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libcdt6:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libcgraph8:armhf. 218s Preparing to unpack .../19-libcgraph8_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libcgraph8:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libpathplan4:armhf. 218s Preparing to unpack .../20-libpathplan4_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libpathplan4:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libxdot4:armhf. 218s Preparing to unpack .../21-libxdot4_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libxdot4:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libgvc7:armhf. 218s Preparing to unpack .../22-libgvc7_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libgvc7:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libgvpr2:armhf. 218s Preparing to unpack .../23-libgvpr2_14.1.1-2ubuntu3_armhf.deb ... 218s Unpacking libgvpr2:armhf (14.1.1-2ubuntu3) ... 218s Selecting previously unselected package libpixman-1-0:armhf. 218s Preparing to unpack .../24-libpixman-1-0_0.46.4-1_armhf.deb ... 218s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 218s Selecting previously unselected package libxcb-render0:armhf. 218s Preparing to unpack .../25-libxcb-render0_1.17.0-2build1_armhf.deb ... 218s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 218s Selecting previously unselected package libxcb-shm0:armhf. 218s Preparing to unpack .../26-libxcb-shm0_1.17.0-2build1_armhf.deb ... 218s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 218s Selecting previously unselected package libxrender1:armhf. 218s Preparing to unpack .../27-libxrender1_1%3a0.9.12-1_armhf.deb ... 218s Unpacking libxrender1:armhf (1:0.9.12-1) ... 218s Selecting previously unselected package libcairo2:armhf. 218s Preparing to unpack .../28-libcairo2_1.18.4-3_armhf.deb ... 218s Unpacking libcairo2:armhf (1.18.4-3) ... 218s Selecting previously unselected package libsharpyuv0:armhf. 218s Preparing to unpack .../29-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 218s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 218s Selecting previously unselected package libaom3:armhf. 218s Preparing to unpack .../30-libaom3_3.13.1-2_armhf.deb ... 218s Unpacking libaom3:armhf (3.13.1-2) ... 218s Selecting previously unselected package libheif-plugin-aomdec:armhf. 218s Preparing to unpack .../31-libheif-plugin-aomdec_1.21.2-1_armhf.deb ... 218s Unpacking libheif-plugin-aomdec:armhf (1.21.2-1) ... 218s Selecting previously unselected package libde265-0:armhf. 218s Preparing to unpack .../32-libde265-0_1.0.16-1build1_armhf.deb ... 218s Unpacking libde265-0:armhf (1.0.16-1build1) ... 218s Selecting previously unselected package libheif-plugin-libde265:armhf. 218s Preparing to unpack .../33-libheif-plugin-libde265_1.21.2-1_armhf.deb ... 218s Unpacking libheif-plugin-libde265:armhf (1.21.2-1) ... 218s Selecting previously unselected package libheif1:armhf. 218s Preparing to unpack .../34-libheif1_1.21.2-1_armhf.deb ... 218s Unpacking libheif1:armhf (1.21.2-1) ... 218s Selecting previously unselected package libimagequant0:armhf. 218s Preparing to unpack .../35-libimagequant0_2.18.0-1build1_armhf.deb ... 218s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 218s Selecting previously unselected package libjpeg-turbo8:armhf. 218s Preparing to unpack .../36-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 218s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 218s Selecting previously unselected package libjpeg8:armhf. 218s Preparing to unpack .../37-libjpeg8_8c-2ubuntu11_armhf.deb ... 218s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 218s Selecting previously unselected package libdeflate0:armhf. 218s Preparing to unpack .../38-libdeflate0_1.23-2_armhf.deb ... 218s Unpacking libdeflate0:armhf (1.23-2) ... 219s Selecting previously unselected package libjbig0:armhf. 219s Preparing to unpack .../39-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 219s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 219s Selecting previously unselected package liblerc4:armhf. 219s Preparing to unpack .../40-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 219s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 219s Selecting previously unselected package libwebp7:armhf. 219s Preparing to unpack .../41-libwebp7_1.5.0-0.1build1_armhf.deb ... 219s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 219s Selecting previously unselected package libtiff6:armhf. 219s Preparing to unpack .../42-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 219s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 219s Selecting previously unselected package libxpm4:armhf. 219s Preparing to unpack .../43-libxpm4_1%3a3.5.17-1build3_armhf.deb ... 219s Unpacking libxpm4:armhf (1:3.5.17-1build3) ... 219s Selecting previously unselected package libgd3:armhf. 219s Preparing to unpack .../44-libgd3_2.3.3-13ubuntu1_armhf.deb ... 219s Unpacking libgd3:armhf (2.3.3-13ubuntu1) ... 219s Selecting previously unselected package libgvplugin-gd8:armhf. 219s Preparing to unpack .../45-libgvplugin-gd8_14.1.1-2ubuntu3_armhf.deb ... 219s Unpacking libgvplugin-gd8:armhf (14.1.1-2ubuntu3) ... 219s Selecting previously unselected package libgraphite2-3:armhf. 219s Preparing to unpack .../46-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 219s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 219s Selecting previously unselected package libharfbuzz0b:armhf. 219s Preparing to unpack .../47-libharfbuzz0b_12.3.0-4_armhf.deb ... 219s Unpacking libharfbuzz0b:armhf (12.3.0-4) ... 219s Selecting previously unselected package libthai-data. 219s Preparing to unpack .../48-libthai-data_0.1.30-1_all.deb ... 219s Unpacking libthai-data (0.1.30-1) ... 219s Selecting previously unselected package libthai0:armhf. 219s Preparing to unpack .../49-libthai0_0.1.30-1_armhf.deb ... 219s Unpacking libthai0:armhf (0.1.30-1) ... 219s Selecting previously unselected package libpango-1.0-0:armhf. 219s Preparing to unpack .../50-libpango-1.0-0_1.56.4-1_armhf.deb ... 219s Unpacking libpango-1.0-0:armhf (1.56.4-1) ... 219s Selecting previously unselected package libpangoft2-1.0-0:armhf. 219s Preparing to unpack .../51-libpangoft2-1.0-0_1.56.4-1_armhf.deb ... 219s Unpacking libpangoft2-1.0-0:armhf (1.56.4-1) ... 219s Selecting previously unselected package libpangocairo-1.0-0:armhf. 219s Preparing to unpack .../52-libpangocairo-1.0-0_1.56.4-1_armhf.deb ... 219s Unpacking libpangocairo-1.0-0:armhf (1.56.4-1) ... 219s Selecting previously unselected package libgvplugin-pango8:armhf. 219s Preparing to unpack .../53-libgvplugin-pango8_14.1.1-2ubuntu3_armhf.deb ... 219s Unpacking libgvplugin-pango8:armhf (14.1.1-2ubuntu3) ... 219s Selecting previously unselected package graphviz. 219s Preparing to unpack .../54-graphviz_14.1.1-2ubuntu3_armhf.deb ... 219s Unpacking graphviz (14.1.1-2ubuntu3) ... 219s Selecting previously unselected package x11-common. 219s Preparing to unpack .../55-x11-common_1%3a7.7+24ubuntu1_all.deb ... 219s Unpacking x11-common (1:7.7+24ubuntu1) ... 219s Selecting previously unselected package libice6:armhf. 219s Preparing to unpack .../56-libice6_2%3a1.1.1-1build1_armhf.deb ... 219s Unpacking libice6:armhf (2:1.1.1-1build1) ... 219s Selecting previously unselected package libpaper2:armhf. 219s Preparing to unpack .../57-libpaper2_2.2.5-0.3build1_armhf.deb ... 219s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 219s Selecting previously unselected package libpaper-utils. 219s Preparing to unpack .../58-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 219s Unpacking libpaper-utils (2.2.5-0.3build1) ... 219s Selecting previously unselected package libsm6:armhf. 219s Preparing to unpack .../59-libsm6_2%3a1.2.6-1_armhf.deb ... 219s Unpacking libsm6:armhf (2:1.2.6-1) ... 219s Selecting previously unselected package libxft2:armhf. 219s Preparing to unpack .../60-libxft2_2.3.6-1build2_armhf.deb ... 219s Unpacking libxft2:armhf (2.3.6-1build2) ... 219s Selecting previously unselected package libxss1:armhf. 219s Preparing to unpack .../61-libxss1_1%3a1.2.3-1build4_armhf.deb ... 219s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 220s Selecting previously unselected package libtk8.6:armhf. 220s Preparing to unpack .../62-libtk8.6_8.6.17-1_armhf.deb ... 220s Unpacking libtk8.6:armhf (8.6.17-1) ... 220s Selecting previously unselected package libxt6t64:armhf. 220s Preparing to unpack .../63-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 220s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 220s Selecting previously unselected package python3-ftputil. 220s Preparing to unpack .../64-python3-ftputil_5.1.0-1build1_all.deb ... 220s Unpacking python3-ftputil (5.1.0-1build1) ... 220s Selecting previously unselected package python3-iniconfig. 220s Preparing to unpack .../65-python3-iniconfig_2.1.0-2_all.deb ... 220s Unpacking python3-iniconfig (2.1.0-2) ... 220s Selecting previously unselected package python3-pytz. 220s Preparing to unpack .../66-python3-pytz_2025.2-5_all.deb ... 220s Unpacking python3-pytz (2025.2-5) ... 220s Selecting previously unselected package python3-pandas-lib:armhf. 220s Preparing to unpack .../67-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 220s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 220s Selecting previously unselected package python3-pandas. 220s Preparing to unpack .../68-python3-pandas_2.3.3+dfsg-3_all.deb ... 220s Unpacking python3-pandas (2.3.3+dfsg-3) ... 220s Selecting previously unselected package python3-pluggy. 220s Preparing to unpack .../69-python3-pluggy_1.6.0-2_all.deb ... 220s Unpacking python3-pluggy (1.6.0-2) ... 220s Selecting previously unselected package python3-pytest. 220s Preparing to unpack .../70-python3-pytest_9.0.2-2_all.deb ... 220s Unpacking python3-pytest (9.0.2-2) ... 220s Selecting previously unselected package python3-pytest-mock. 220s Preparing to unpack .../71-python3-pytest-mock_3.15.1-1_all.deb ... 220s Unpacking python3-pytest-mock (3.15.1-1) ... 220s Selecting previously unselected package python3-requests-mock. 220s Preparing to unpack .../72-python3-requests-mock_1.12.1-4_all.deb ... 220s Unpacking python3-requests-mock (1.12.1-4) ... 220s Selecting previously unselected package zip. 220s Preparing to unpack .../73-zip_3.0-15ubuntu2_armhf.deb ... 220s Unpacking zip (3.0-15ubuntu2) ... 221s Selecting previously unselected package unzip. 221s Preparing to unpack .../74-unzip_6.0-29ubuntu1_armhf.deb ... 221s Unpacking unzip (6.0-29ubuntu1) ... 221s Selecting previously unselected package xdg-utils. 221s Preparing to unpack .../75-xdg-utils_1.2.1-2ubuntu2_all.deb ... 221s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 221s Selecting previously unselected package r-base-core. 221s Preparing to unpack .../76-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 221s Unpacking r-base-core (4.5.2-1ubuntu2) ... 221s Selecting previously unselected package stress. 221s Preparing to unpack .../77-stress_1.0.7-2_armhf.deb ... 221s Unpacking stress (1.0.7-2) ... 221s Setting up libxdot4:armhf (14.1.1-2ubuntu3) ... 221s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 221s Setting up python3-iniconfig (2.1.0-2) ... 221s Setting up libcdt6:armhf (14.1.1-2ubuntu3) ... 221s Setting up libpixman-1-0:armhf (0.46.4-1) ... 221s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 221s Setting up libaom3:armhf (3.13.1-2) ... 221s Setting up python3-ftputil (5.1.0-1build1) ... 221s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 221s Setting up libxpm4:armhf (1:3.5.17-1build3) ... 221s Setting up libxrender1:armhf (1:0.9.12-1) ... 221s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 221s Setting up stress (1.0.7-2) ... 221s Setting up unzip (6.0-29ubuntu1) ... 221s Setting up x11-common (1:7.7+24ubuntu1) ... 222s Setting up libdeflate0:armhf (1.23-2) ... 222s Setting up python3-pytz (2025.2-5) ... 222s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 222s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 222s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 222s Setting up zip (3.0-15ubuntu2) ... 222s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 222s Setting up libpathplan4:armhf (14.1.1-2ubuntu3) ... 222s Setting up python3-requests-mock (1.12.1-4) ... 222s Setting up libimagequant0:armhf (2.18.0-1build1) ... 222s Setting up fonts-dejavu-mono (2.37-8build1) ... 222s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 222s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 222s Setting up fonts-dejavu-core (2.37-8build1) ... 222s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 222s Setting up python3-numpy (1:2.3.5+ds-3) ... 225s Setting up libltdl7:armhf (2.5.4-9) ... 225s Setting up python3-pluggy (1.6.0-2) ... 225s Setting up libcgraph8:armhf (14.1.1-2ubuntu3) ... 225s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 225s Setting up libgvpr2:armhf (14.1.1-2ubuntu3) ... 225s Setting up libsuitesparseconfig7:armhf (1:7.12.1+dfsg-1) ... 225s Setting up libharfbuzz0b:armhf (12.3.0-4) ... 225s Setting up libthai-data (0.1.30-1) ... 225s Setting up libxss1:armhf (1:1.2.3-1build4) ... 225s Setting up libpaper2:armhf (2.2.5-0.3build1) ... 225s Setting up libde265-0:armhf (1.0.16-1build1) ... 225s Setting up xdg-utils (1.2.1-2ubuntu2) ... 225s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 225s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 225s Setting up libice6:armhf (2:1.1.1-1build1) ... 225s Setting up tcl8.6 (8.6.17+dfsg-1) ... 225s Setting up libamd3:armhf (1:7.12.1+dfsg-1) ... 225s Setting up libcolamd3:armhf (1:7.12.1+dfsg-1) ... 225s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 225s Setting up python3-pytest (9.0.2-2) ... 226s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 226s Setting up libpaper-utils (2.2.5-0.3build1) ... 226s Setting up libthai0:armhf (0.1.30-1) ... 226s Setting up python3-pandas (2.3.3+dfsg-3) ... 232s Setting up libglpk40:armhf (5.0-2) ... 232s Setting up glpk-utils (5.0-2) ... 232s Setting up libgvc7:armhf (14.1.1-2ubuntu3) ... 232s Setting up python3-pytest-mock (3.15.1-1) ... 232s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 232s Setting up environment-modules (5.6.1-1) ... 232s Setting up libsm6:armhf (2:1.2.6-1) ... 232s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 232s Setting up libheif-plugin-libde265:armhf (1.21.2-1) ... 232s Setting up libheif1:armhf (1.21.2-1) ... 232s Setting up libheif-plugin-aomdec:armhf (1.21.2-1) ... 232s Processing triggers for libc-bin (2.42-2ubuntu4) ... 232s Processing triggers for man-db (2.13.1-1) ... 233s Processing triggers for sgml-base (1.31+nmu1) ... 233s Setting up libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 233s Processing triggers for install-info (7.2-5) ... 233s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 235s Regenerating fonts cache... done. 235s Setting up libxft2:armhf (2.3.6-1build2) ... 235s Setting up libtk8.6:armhf (8.6.17-1) ... 235s Setting up libpango-1.0-0:armhf (1.56.4-1) ... 235s Setting up libcairo2:armhf (1.18.4-3) ... 235s Setting up libgd3:armhf (2.3.3-13ubuntu1) ... 235s Setting up libpangoft2-1.0-0:armhf (1.56.4-1) ... 235s Setting up libpangocairo-1.0-0:armhf (1.56.4-1) ... 235s Setting up libgvplugin-pango8:armhf (14.1.1-2ubuntu3) ... 235s Setting up libgvplugin-gd8:armhf (14.1.1-2ubuntu3) ... 235s Setting up r-base-core (4.5.2-1ubuntu2) ... 235s Creating config file /etc/R/Renviron with new version 235s Setting up graphviz (14.1.1-2ubuntu3) ... 235s Processing triggers for libc-bin (2.42-2ubuntu4) ... 243s autopkgtest [20:03:44]: test run-unit-test: [----------------------- 246s ============================= test session starts ============================== 246s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 246s cachedir: .pytest_cache 246s rootdir: /tmp/autopkgtest.MJsaVt/autopkgtest_tmp 246s plugins: typeguard-4.4.4, mock-3.15.1, requests_mock-1.12.1 249s collecting ... collected 395 items / 97 deselected / 298 selected 249s 249s tests/test_expand.py::test_simple_expand PASSED [ 0%] 249s tests/test_expand.py::test_allow_missing PASSED [ 0%] 249s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 249s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 249s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 249s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 249s tests/test_io.py::test_expand PASSED [ 2%] 249s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 2%] 249s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 249s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 249s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 249s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 249s tests/test_linting.py::test_lint[absolute_paths-positive] SKIPPED (T...) [ 4%] 249s tests/test_linting.py::test_lint[absolute_paths-negative] SKIPPED (T...) [ 4%] 249s tests/test_linting.py::test_lint[dynamic-positive] SKIPPED (This tes...) [ 5%] 249s tests/test_linting.py::test_lint[dynamic-negative] SKIPPED (This tes...) [ 5%] 249s tests/test_linting.py::test_lint[envvars-positive] SKIPPED (This tes...) [ 5%] 249s tests/test_linting.py::test_lint[envvars-negative] SKIPPED (This tes...) [ 6%] 249s tests/test_linting.py::test_lint[iofile_by_index-positive] SKIPPED (...) [ 6%] 249s tests/test_linting.py::test_lint[iofile_by_index-negative] SKIPPED (...) [ 6%] 249s tests/test_linting.py::test_lint[log_directive-positive] SKIPPED (Th...) [ 7%] 249s tests/test_linting.py::test_lint[log_directive-negative] SKIPPED (Th...) [ 7%] 249s tests/test_linting.py::test_lint[long_run-positive] SKIPPED (This te...) [ 7%] 249s tests/test_linting.py::test_lint[long_run-negative] SKIPPED (This te...) [ 8%] 249s tests/test_linting.py::test_lint[missing_software_definition-positive] SKIPPED [ 8%] 249s tests/test_linting.py::test_lint[missing_software_definition-negative] SKIPPED [ 8%] 249s tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 9%] 249s tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 9%] 249s tests/test_linting.py::test_lint[not_used_params-positive] SKIPPED (...) [ 9%] 249s tests/test_linting.py::test_lint[not_used_params-negative] SKIPPED (...) [ 10%] 249s tests/test_linting.py::test_lint[params_prefix-positive] SKIPPED (Th...) [ 10%] 249s tests/test_linting.py::test_lint[params_prefix-negative] SKIPPED (Th...) [ 10%] 249s tests/test_linting.py::test_lint[path_add-positive] SKIPPED (This te...) [ 11%] 249s tests/test_linting.py::test_lint[path_add-negative] SKIPPED (This te...) [ 11%] 249s tests/test_linting.py::test_lint[singularity-positive] SKIPPED (This...) [ 11%] 249s tests/test_linting.py::test_lint[singularity-negative] SKIPPED (This...) [ 12%] 249s tests/test_linting.py::test_lint[tab_usage-positive] SKIPPED (This t...) [ 12%] 249s tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED (This t...) [ 12%] 249s tests/test_linting.py::test_lint[version-positive] SKIPPED (This tes...) [ 13%] 249s tests/test_linting.py::test_lint[version-negative] SKIPPED (This tes...) [ 13%] 249s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 250s tests/test_schema.py::test_config PASSED [ 14%] 250s tests/test_schema.py::test_config_ref FAILED [ 14%] 250s tests/test_schema.py::test_dataframe PASSED [ 14%] 250s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 250s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 250s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 250s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 250s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) [ 16%] 250s tests/testapi.py::test_keep_logger PASSED [ 16%] 250s tests/testapi.py::test_workflow_calling SKIPPED (This test is known ...) [ 17%] 251s tests/testapi.py::test_run_script_directive PASSED [ 17%] 252s tests/testapi.py::test_run_script_directive_async PASSED [ 17%] 254s tests/testapi.py::test_dicts_in_config PASSED [ 18%] 254s tests/testapi.py::test_lockexception PASSED [ 18%] 256s tests/tests.py::test_list_untracked PASSED [ 18%] 260s tests/tests.py::test_delete_all_output PASSED [ 19%] 261s tests/tests.py::test_github_issue_14 PASSED [ 19%] 261s tests/tests.py::test_issue956 PASSED [ 19%] 261s tests/tests.py::test01 PASSED [ 20%] 261s tests/tests.py::test02 PASSED [ 20%] 261s tests/tests.py::test03 PASSED [ 20%] 261s tests/tests.py::test04 PASSED [ 21%] 266s tests/tests.py::test05 PASSED [ 21%] 266s tests/tests.py::test06 PASSED [ 21%] 266s tests/tests.py::test07 PASSED [ 22%] 266s tests/tests.py::test08 PASSED [ 22%] 266s tests/tests.py::test09 PASSED [ 22%] 268s tests/tests.py::test10 PASSED [ 23%] 268s tests/tests.py::test11 PASSED [ 23%] 268s tests/tests.py::test12 PASSED [ 23%] 269s tests/tests.py::test13 PASSED [ 24%] 319s tests/tests.py::test14 PASSED [ 24%] 369s tests/tests.py::test_cluster_statusscript PASSED [ 24%] 391s tests/tests.py::test_cluster_cancelscript PASSED [ 25%] 412s tests/tests.py::test_cluster_sidecar PASSED [ 25%] 454s tests/tests.py::test_cluster_cancelscript_nargs1 PASSED [ 25%] 474s tests/tests.py::test_cluster_statusscript_multi PASSED [ 26%] 474s tests/tests.py::test15 PASSED [ 26%] 474s tests/tests.py::test_glpk_solver PASSED [ 26%] 474s tests/tests.py::test_coin_solver PASSED [ 27%] 474s tests/tests.py::test_directory PASSED [ 27%] 476s tests/tests.py::test_directory2 PASSED [ 27%] 477s tests/tests.py::test_dynamic PASSED [ 28%] 477s tests/tests.py::test_params PASSED [ 28%] 477s tests/tests.py::test_same_wildcard PASSED [ 28%] 477s tests/tests.py::test_conditional PASSED [ 29%] 477s tests/tests.py::test_unpack_dict PASSED [ 29%] 478s tests/tests.py::test_unpack_list PASSED [ 29%] 479s tests/tests.py::test_shell PASSED [ 30%] 519s tests/tests.py::test_temp PASSED [ 30%] 520s tests/tests.py::test_keyword_list PASSED [ 30%] 520s tests/tests.py::test_subworkflows PASSED [ 31%] 520s tests/tests.py::test_globwildcards PASSED [ 31%] 520s tests/tests.py::test_local_import PASSED [ 31%] 520s tests/tests.py::test_ruledeps PASSED [ 32%] 520s tests/tests.py::test_persistent_dict PASSED [ 32%] 521s tests/tests.py::test_touch PASSED [ 32%] 521s tests/tests.py::test_touch_flag_with_directories PASSED [ 33%] 521s tests/tests.py::test_config PASSED [ 33%] 522s tests/tests.py::test_update_config PASSED [ 33%] 524s tests/tests.py::test_config_merging PASSED [ 34%] 525s tests/tests.py::test_wildcard_keyword PASSED [ 34%] 547s tests/tests.py::test_benchmark PASSED [ 34%] 547s tests/tests.py::test_temp_expand PASSED [ 35%] 547s tests/tests.py::test_wildcard_count_ambiguity PASSED [ 35%] 547s tests/tests.py::test_srcdir PASSED [ 35%] 547s tests/tests.py::test_multiple_includes PASSED [ 36%] 547s tests/tests.py::test_name_override PASSED [ 36%] 547s tests/tests.py::test_yaml_config PASSED [ 36%] 597s tests/tests.py::test_cluster_sync PASSED [ 37%] 597s tests/tests.py::test_symlink_temp SKIPPED (This does not work reliab...) [ 37%] 597s tests/tests.py::test_empty_include PASSED [ 37%] 603s tests/tests.py::test_shadow PASSED [ 38%] 606s tests/tests.py::test_shadow_copy PASSED [ 38%] 607s tests/tests.py::test_shadow_prefix PASSED [ 38%] 627s tests/tests.py::test_shadow_prefix_qsub PASSED [ 39%] 629s tests/tests.py::test_shadowed_log PASSED [ 39%] 629s tests/tests.py::test_until PASSED [ 39%] 629s tests/tests.py::test_omitfrom PASSED [ 40%] 633s tests/tests.py::test_nonstr_params PASSED [ 40%] 639s tests/tests.py::test_delete_output PASSED [ 40%] 639s tests/tests.py::test_input_generator PASSED [ 41%] 641s tests/tests.py::test_protected_symlink_output PASSED [ 41%] 641s tests/tests.py::test_issue328 PASSED [ 41%] 642s tests/tests.py::test_get_log_none PASSED [ 42%] 643s tests/tests.py::test_get_log_both PASSED [ 42%] 643s tests/tests.py::test_get_log_stderr PASSED [ 42%] 644s tests/tests.py::test_get_log_stdout PASSED [ 43%] 644s tests/tests.py::test_get_log_complex PASSED [ 43%] 645s tests/tests.py::test_spaces_in_fnames PASSED [ 43%] 645s tests/tests.py::test_deferred_func_eval PASSED [ 44%] 645s tests/tests.py::test_format_params PASSED [ 44%] 647s tests/tests.py::test_rule_defined_in_for_loop PASSED [ 44%] 648s tests/tests.py::test_issue381 PASSED [ 45%] 648s tests/tests.py::test_format_wildcards PASSED [ 45%] 649s tests/tests.py::test_with_parentheses PASSED [ 45%] 649s tests/tests.py::test_dup_out_patterns PASSED [ 46%] 669s tests/tests.py::test_restartable_job_cmd_exit_1_no_restart PASSED [ 46%] 700s tests/tests.py::test_restartable_job_cmd_exit_1_one_restart PASSED [ 46%] 740s tests/tests.py::test_restartable_job_qsub_exit_1 PASSED [ 47%] 741s tests/tests.py::test_threads PASSED [ 47%] 741s tests/tests.py::test_threads0 PASSED [ 47%] 743s tests/tests.py::test_dynamic_temp PASSED [ 48%] 743s tests/tests.py::test_issue260 PASSED [ 48%] 745s tests/tests.py::test_run_namedlist PASSED [ 48%] 745s tests/tests.py::test_gs_requester_pays SKIPPED (Need to choose how t...) [ 49%] 746s tests/tests.py::test_profile PASSED [ 49%] 746s tests/tests.py::test_issue612 PASSED [ 50%] 746s tests/tests.py::test_bash PASSED [ 50%] 746s tests/tests.py::test_inoutput_is_path PASSED [ 50%] 746s tests/tests.py::test_log_input PASSED [ 51%] 746s tests/tests.py::test_issue805 PASSED [ 51%] 746s tests/tests.py::test_issue823_1 PASSED [ 51%] 747s tests/tests.py::test_issue823_2 PASSED [ 52%] 747s tests/tests.py::test_issue823_3 PASSED [ 52%] 747s tests/tests.py::test_pathlib PASSED [ 52%] 748s tests/tests.py::test_pathlib_missing_file PASSED [ 53%] 788s tests/tests.py::test_group_jobs PASSED [ 53%] 808s tests/tests.py::test_group_jobs_attempts PASSED [ 53%] 828s tests/tests.py::test_group_jobs_resources PASSED [ 54%] 848s tests/tests.py::test_group_jobs_resources_with_max_threads PASSED [ 54%] 868s tests/tests.py::test_group_jobs_resources_with_limited_resources PASSED [ 54%] 888s tests/tests.py::test_global_resource_limits_limit_scheduling_of_groups PASSED [ 55%] 908s tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 928s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 948s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 969s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 989s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 1009s tests/tests.py::test_group_job_fail PASSED [ 57%] 1009s tests/tests.py::test_validate PASSED [ 57%] 1009s tests/tests.py::test_validate_fail PASSED [ 57%] 1009s tests/tests.py::test_issue854 PASSED [ 58%] 1039s tests/tests.py::test_issue850 PASSED [ 58%] 1069s tests/tests.py::test_issue860 PASSED [ 58%] 1070s tests/tests.py::test_issue894 PASSED [ 59%] 1070s tests/tests.py::test_issue584 PASSED [ 59%] 1070s tests/tests.py::test_issue912 PASSED [ 59%] 1100s tests/tests.py::test_job_properties PASSED [ 60%] 1100s tests/tests.py::test_issue916 PASSED [ 60%] 1140s tests/tests.py::test_issue930 PASSED [ 60%] 1140s tests/tests.py::test_issue1037 PASSED [ 61%] 1141s tests/tests.py::test_issue1046 PASSED [ 61%] 1141s tests/tests.py::test_checkpoints PASSED [ 61%] 1141s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 1143s tests/tests.py::test_issue1092 PASSED [ 62%] 1143s tests/tests.py::test_issue958 PASSED [ 62%] 1143s tests/tests.py::test_issue471 PASSED [ 63%] 1143s tests/tests.py::test_issue1085 PASSED [ 63%] 1143s tests/tests.py::test_expand_flag PASSED [ 63%] 1143s tests/tests.py::test_tmpdir PASSED [ 64%] 1143s tests/tests.py::test_tmpdir_default PASSED [ 64%] 1144s tests/tests.py::test_issue1284 PASSED [ 64%] 1144s tests/tests.py::test_issue1281 PASSED [ 65%] 1145s tests/tests.py::test_filegraph PASSED [ 65%] 1145s tests/tests.py::test_batch PASSED [ 65%] 1145s tests/tests.py::test_batch_final PASSED [ 66%] 1145s tests/tests.py::test_batch_fail PASSED [ 66%] 1146s tests/tests.py::test_github_issue52 PASSED [ 66%] 1146s tests/tests.py::test_envvars PASSED [ 67%] 1146s tests/tests.py::test_github_issue105 PASSED [ 67%] 1146s tests/tests.py::test_github_issue413 PASSED [ 67%] 1147s tests/tests.py::test_github_issue627 PASSED [ 68%] 1150s tests/tests.py::test_github_issue727 PASSED [ 68%] 1152s tests/tests.py::test_github_issue988 PASSED [ 68%] 1152s tests/tests.py::test_output_file_cache PASSED [ 69%] 1152s tests/tests.py::test_multiext PASSED [ 69%] 1152s tests/tests.py::test_core_dependent_threads PASSED [ 69%] 1152s tests/tests.py::TestParseCoresJobs::test_no_exec[input0-output0] PASSED [ 70%] 1152s tests/tests.py::TestParseCoresJobs::test_no_exec[input1-output1] PASSED [ 70%] 1152s tests/tests.py::TestParseCoresJobs::test_no_exec[input2-output2] PASSED [ 70%] 1152s tests/tests.py::TestParseCoresJobs::test_no_exec[input3-output3] PASSED [ 71%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input0-output0] PASSED [ 71%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input1-output1] PASSED [ 71%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1152s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1152s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1152s tests/tests.py::test_linting PASSED [ 76%] 1182s tests/tests.py::test_string_resources PASSED [ 76%] 1182s tests/tests.py::test_github_issue456 PASSED [ 76%] 1182s tests/tests.py::test_scatter_gather PASSED [ 77%] 1182s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1183s tests/tests.py::test_github_issue640 PASSED [ 77%] 1189s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1189s tests/tests.py::test_metadata_migration PASSED [ 78%] 1195s tests/tests.py::test_paramspace PASSED [ 78%] 1201s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1221s tests/tests.py::test_github_issue806 PASSED [ 79%] 1222s tests/tests.py::test_long_shell PASSED [ 79%] 1222s tests/tests.py::test_modules_all PASSED [ 80%] 1222s tests/tests.py::test_module_nested PASSED [ 80%] 1222s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1222s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1222s tests/tests.py::test_modules_specific PASSED [ 81%] 1222s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1222s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1222s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1223s tests/tests.py::test_handover PASSED [ 82%] 1223s tests/tests.py::test_source_path PASSED [ 83%] 1223s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1223s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1223s tests/tests.py::test_set_resources PASSED [ 84%] 1226s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1226s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1228s tests/tests.py::test_all_temp PASSED [ 85%] 1228s tests/tests.py::test_strict_mode PASSED [ 85%] 1249s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1249s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1269s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1269s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1355s tests/tests.py::test_issue1331 PASSED [ 87%] 1355s tests/tests.py::test_default_target PASSED [ 87%] 1355s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1362s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1362s tests/tests.py::test_template_engine PASSED [ 88%] 1362s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1382s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1384s tests/tests.py::test_service_jobs PASSED [ 89%] 1384s tests/tests.py::test_incomplete_params PASSED [ 89%] 1387s tests/tests.py::test_github_issue261 PASSED [ 90%] 1387s tests/tests.py::test_pipe_depend PASSED [ 90%] 1387s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1387s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1387s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1387s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1387s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1388s tests/tests.py::test_lazy_resources PASSED [ 92%] 1388s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1388s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1388s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1388s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1388s tests/tests.py::test_ensure_success PASSED [ 94%] 1388s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1389s tests/tests.py::test_fstring PASSED [ 94%] 1401s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1403s tests/tests.py::test_retries PASSED [ 95%] 1406s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1406s tests/tests.py::test_module_input_func PASSED [ 96%] 1406s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1406s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1408s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1408s tests/tests.py::test_github_issue929 PASSED [ 97%] 1411s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1411s tests/tests.py::test_inferred_resources PASSED [ 98%] 1412s tests/tests.py::test_workflow_profile PASSED [ 98%] 1414s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1414s tests/tests.py::test_localrule PASSED [ 99%] 1414s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1416s tests/tests.py::test_config_yte PASSED [100%] 1416s 1416s =================================== FAILURES =================================== 1416s _______________________________ test_config_ref ________________________________ 1416s 1416s self = 1416s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s def resolve_from_url(self, url): 1416s """ 1416s Resolve the given URL. 1416s """ 1416s url, fragment = urldefrag(url) 1416s if not url: 1416s url = self.base_uri 1416s 1416s try: 1416s > document = self.store[url] 1416s ^^^^^^^^^^^^^^^ 1416s 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:1096: 1416s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1416s 1416s self = {'http://json-schema.org/draft-06/schema': {'$schema': 'http://json-schema.org/draft-06/schema#', '$id': 'http://json-...t': 'json', '$ref': '/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}} 1416s uri = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s def __getitem__(self, uri): 1416s > return self.store[self.normalize(uri)] 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s E KeyError: 'file:///tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s /usr/lib/python3/dist-packages/jsonschema/_utils.py:20: KeyError 1416s 1416s During handling of the above exception, another exception occurred: 1416s 1416s self = 1416s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s def resolve_from_url(self, url): 1416s """ 1416s Resolve the given URL. 1416s """ 1416s url, fragment = urldefrag(url) 1416s if not url: 1416s url = self.base_uri 1416s 1416s try: 1416s document = self.store[url] 1416s except KeyError: 1416s try: 1416s > document = self.resolve_remote(url) 1416s ^^^^^^^^^^^^^^^^^^^^^^^^ 1416s 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:1099: 1416s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:1196: in resolve_remote 1416s result = self.handlers[scheme](uri) 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/snakemake/utils.py:74: in 1416s "file": lambda uri: _load_configfile(re.sub("^file://", "", uri)) 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1416s 1416s configpath_or_obj = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s filetype = 'Config' 1416s 1416s def _load_configfile(configpath_or_obj, filetype="Config"): 1416s "Tries to load a configfile first as JSON, then as YAML, into a dict." 1416s import yaml 1416s 1416s if isinstance(configpath_or_obj, str) or isinstance(configpath_or_obj, Path): 1416s > obj = open(configpath_or_obj, encoding="utf-8") 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s E FileNotFoundError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s /usr/lib/python3/dist-packages/snakemake/io.py:1694: FileNotFoundError 1416s 1416s During handling of the above exception, another exception occurred: 1416s 1416s config_schema_ref = local('/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/config.ref.schema.yaml') 1416s 1416s def test_config_ref(config_schema_ref): 1416s config = {} 1416s > validate(config, str(config_schema_ref)) 1416s 1416s tests/test_schema.py:127: 1416s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1416s /usr/lib/python3/dist-packages/snakemake/utils.py:141: in validate 1416s DefaultValidator(schema, resolver=resolver).validate(data) 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:434: in validate 1416s for error in self.iter_errors(*args, **kwargs): 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:368: in iter_errors 1416s for error in errors: 1416s ^^^^^^ 1416s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1416s for error in validate_properties(validator, properties, instance, schema): 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1416s yield from validator.descend( 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1416s for error in errors: 1416s ^^^^^^ 1416s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1416s for error in validate_properties(validator, properties, instance, schema): 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1416s yield from validator.descend( 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1416s for error in errors: 1416s ^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:274: in ref 1416s yield from validator._validate_reference(ref=ref, instance=instance) 1416s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:461: in _validate_reference 1416s scope, resolved = resolve(ref) 1416s ^^^^^^^^^^^^ 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:1085: in resolve 1416s return url, self._remote_cache(url) 1416s ^^^^^^^^^^^^^^^^^^^^^^^ 1416s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1416s 1416s self = 1416s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s def resolve_from_url(self, url): 1416s """ 1416s Resolve the given URL. 1416s """ 1416s url, fragment = urldefrag(url) 1416s if not url: 1416s url = self.base_uri 1416s 1416s try: 1416s document = self.store[url] 1416s except KeyError: 1416s try: 1416s document = self.resolve_remote(url) 1416s except Exception as exc: 1416s > raise exceptions._RefResolutionError(exc) 1416s E jsonschema.exceptions._RefResolutionError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1416s 1416s /usr/lib/python3/dist-packages/jsonschema/validators.py:1101: _RefResolutionError 1416s ------------------------------ Captured log call ------------------------------- 1416s CRITICAL snakemake.logging:logging.py:582 No validator found for JSON Schema version identifier 'https://json-schema.org/draft/2020-12/schema#' 1416s CRITICAL snakemake.logging:logging.py:582 Defaulting to validator for JSON Schema version 'https://json-schema.org/draft/2020-12/schema' 1416s CRITICAL snakemake.logging:logging.py:582 Note that schema file may not be validated correctly. 1416s =============================== warnings summary =============================== 1416s tests/test_schema.py: 10 warnings 1416s tests/tests.py: 6 warnings 1416s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1416s from jsonschema import validators, RefResolver 1416s 1416s tests/testapi.py::test_keep_logger 1416s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1416s import pkg_resources 1416s 1416s tests/testapi.py::test_lockexception 1416s /usr/lib/python3/dist-packages/_pytest/python.py:170: PytestReturnNotNoneWarning: Test functions should return None, but tests/testapi.py::test_lockexception returned . 1416s Did you mean to use `assert` instead of `return`? 1416s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 1416s warnings.warn( 1416s 1416s tests/tests.py::test_glpk_solver 1416s :898: DeprecationWarning: This process (pid=3244) is multi-threaded, use of fork() may lead to deadlocks in the child. 1416s 1416s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1416s =========================== short test summary info ============================ 1416s FAILED tests/test_schema.py::test_config_ref - jsonschema.exceptions._RefReso... 1416s = 1 failed, 251 passed, 46 skipped, 97 deselected, 19 warnings in 1168.07s (0:19:28) = 1419s autopkgtest [20:23:20]: test run-unit-test: -----------------------] 1423s run-unit-test FAIL non-zero exit status 1 1423s autopkgtest [20:23:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1428s autopkgtest [20:23:29]: @@@@@@@@@@@@@@@@@@@@ summary 1428s command1 PASS 1428s run-unit-test FAIL non-zero exit status 1