0s autopkgtest [17:33:11]: starting date and time: 2025-12-01 17:33:11+0000 0s autopkgtest [17:33:11]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [17:33:11]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ux6c_0sl/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:mathjax --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mathjax/2.7.9+dfsg-1build1 -- lxd -r lxd-armhf-10.145.243.227 lxd-armhf-10.145.243.227:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [17:33:33]: testbed dpkg architecture: armhf 24s autopkgtest [17:33:35]: testbed apt version: 3.1.12 28s autopkgtest [17:33:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [17:33:41]: testbed release detected to be: None 37s autopkgtest [17:33:48]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 40s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 40s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 40s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 40s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [166 kB] 40s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [20.5 kB] 40s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [757 kB] 41s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [90.6 kB] 41s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [447 kB] 41s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [4560 B] 41s Get:11 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 43s Get:12 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [311 kB] 43s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1414 kB] 43s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1366 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/restricted armhf Packages [692 B] 44s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 44s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [183 kB] 47s Fetched 41.8 MB in 8s (5492 kB/s) 48s Reading package lists... 54s autopkgtest [17:34:05]: upgrading testbed (apt dist-upgrade and autopurge) 55s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s The following packages will be upgraded: 56s apport-symptoms command-not-found fonts-ubuntu-console 56s python3-commandnotfound 56s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 48.6 kB of archives. 56s After this operation, 3072 B of additional disk space will be used. 56s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf command-not-found all 23.04.0build1 [5148 B] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3-commandnotfound all 23.04.0build1 [11.6 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf apport-symptoms all 0.25build1 [13.0 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-ubuntu-console all 0.869+git20240321-0ubuntu2 [18.8 kB] 57s Fetched 48.6 kB in 0s (118 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65925 files and directories currently installed.) 57s Preparing to unpack .../command-not-found_23.04.0build1_all.deb ... 57s Unpacking command-not-found (23.04.0build1) over (23.04.0) ... 57s Preparing to unpack .../python3-commandnotfound_23.04.0build1_all.deb ... 57s Unpacking python3-commandnotfound (23.04.0build1) over (23.04.0) ... 57s Preparing to unpack .../apport-symptoms_0.25build1_all.deb ... 57s Unpacking apport-symptoms (0.25build1) over (0.25) ... 57s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu2_all.deb ... 57s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu2) over (0.869+git20240321-0ubuntu1) ... 57s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu2) ... 57s Setting up apport-symptoms (0.25build1) ... 57s Setting up python3-commandnotfound (23.04.0build1) ... 58s Setting up command-not-found (23.04.0build1) ... 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [17:34:14]: rebooting testbed after setup commands that affected boot 105s autopkgtest [17:34:56]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 131s autopkgtest [17:35:22]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 146s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (dsc) [3526 B] 146s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (tar) [8886 kB] 146s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (diff) [29.8 kB] 146s gpgv: Signature made Sun Feb 9 22:32:14 2025 UTC 146s gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 146s gpgv: issuer "rebecca_palmer@zoho.com" 146s gpgv: Can't check signature: No public key 146s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-7.dsc: no acceptable signature found 147s autopkgtest [17:35:38]: testing package snakemake version 7.32.4-7 149s autopkgtest [17:35:40]: build not needed 153s autopkgtest [17:35:44]: test command1: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 156s The following NEW packages will be installed: 156s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 156s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 156s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 156s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 156s python3-connection-pool python3-datrie python3-decorator python3-docutils 156s python3-dpath python3-fastjsonschema python3-git python3-gitdb 156s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 156s python3-platformdirs python3-psutil python3-pulp python3-ratelimiter 156s python3-retry python3-roman python3-smart-open python3-smmap python3-stopit 156s python3-tabulate python3-throttler python3-toposort python3-traitlets 156s python3-wrapt python3-yte sgml-base snakemake xml-core 156s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 13.7 MB of archives. 156s After this operation, 54.3 MB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 157s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-9ubuntu1 [334 kB] 157s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 157s Get:4 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcoinutils3v5 armhf 2.11.12+ds-1 [424 kB] 157s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libosi1v5 armhf 0.108.11+ds-1 [291 kB] 157s Get:6 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libclp1 armhf 1.17.10+ds-1 [779 kB] 157s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcgl1 armhf 0.60.9+ds-1 [380 kB] 157s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcbc3.1 armhf 2.10.12+ds-1 [661 kB] 157s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 157s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19 [20.3 kB] 157s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf docutils-common all 0.21.2+dfsg-2 [131 kB] 157s Get:12 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 157s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf liberror-perl all 0.17030-1 [23.5 kB] 157s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf git-man all 1:2.51.0-1ubuntu1 [1179 kB] 157s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf git armhf 1:2.51.0-1ubuntu1 [4649 kB] 157s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 157s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 157s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 157s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-configargparse all 1.7-2 [31.7 kB] 157s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-connection-pool all 0.0.3-2build1 [5792 B] 157s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datrie armhf 0.8.3-2 [195 kB] 157s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 157s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf python3-roman all 5.1-1 [10.6 kB] 157s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf python3-docutils all 0.21.2+dfsg-2 [409 kB] 157s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dpath all 2.2.0-1 [20.1 kB] 157s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 157s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smmap all 6.0.0-1 [20.5 kB] 157s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gitdb all 4.0.12-1 [46.4 kB] 157s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-git all 3.1.45-1 [149 kB] 157s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanfriendly all 10.0-6 [70.8 kB] 157s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.4.0-1 [16.9 kB] 157s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 157s Get:33 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.7.2-5 [28.1 kB] 157s Get:34 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.9.1-1 [41.2 kB] 158s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plac all 1.4.3-2 [63.2 kB] 158s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf python3-psutil armhf 7.1.0-1ubuntu1 [189 kB] 158s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-cbc armhf 2.10.12+ds-1 [14.5 kB] 158s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 158s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ratelimiter armhf 1.2.0.post0-5 [5782 B] 158s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-retry all 0.9.2-4 [6094 B] 158s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf python3-wrapt armhf 1.17.3-2 [38.0 kB] 158s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smart-open all 7.1.0-1 [89.9 kB] 158s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-stopit all 1.1.2-3 [12.8 kB] 158s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tabulate all 0.9.0-1 [45.3 kB] 158s Get:45 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-throttler all 1.2.2-2 [7138 B] 158s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-toposort all 1.10-2 [6348 B] 158s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-yte all 1.5.4-1 [12.0 kB] 158s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf snakemake all 7.32.4-7 [274 kB] 158s Fetched 13.7 MB in 1s (9814 kB/s) 158s Selecting previously unselected package libblas3:armhf. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 158s Preparing to unpack .../00-libblas3_3.12.1-7_armhf.deb ... 158s Unpacking libblas3:armhf (3.12.1-7) ... 158s Selecting previously unselected package libgfortran5:armhf. 158s Preparing to unpack .../01-libgfortran5_15.2.0-9ubuntu1_armhf.deb ... 158s Unpacking libgfortran5:armhf (15.2.0-9ubuntu1) ... 158s Selecting previously unselected package liblapack3:armhf. 158s Preparing to unpack .../02-liblapack3_3.12.1-7_armhf.deb ... 158s Unpacking liblapack3:armhf (3.12.1-7) ... 159s Selecting previously unselected package coinor-libcoinutils3v5:armhf. 159s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_armhf.deb ... 159s Unpacking coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 159s Selecting previously unselected package coinor-libosi1v5:armhf. 159s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_armhf.deb ... 159s Unpacking coinor-libosi1v5:armhf (0.108.11+ds-1) ... 159s Selecting previously unselected package coinor-libclp1:armhf. 159s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1_armhf.deb ... 159s Unpacking coinor-libclp1:armhf (1.17.10+ds-1) ... 159s Selecting previously unselected package coinor-libcgl1:armhf. 159s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1_armhf.deb ... 159s Unpacking coinor-libcgl1:armhf (0.60.9+ds-1) ... 159s Selecting previously unselected package coinor-libcbc3.1:armhf. 159s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1_armhf.deb ... 159s Unpacking coinor-libcbc3.1:armhf (2.10.12+ds-1) ... 159s Selecting previously unselected package sgml-base. 159s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 159s Unpacking sgml-base (1.31+nmu1) ... 159s Selecting previously unselected package xml-core. 159s Preparing to unpack .../09-xml-core_0.19_all.deb ... 159s Unpacking xml-core (0.19) ... 159s Selecting previously unselected package docutils-common. 159s Preparing to unpack .../10-docutils-common_0.21.2+dfsg-2_all.deb ... 159s Unpacking docutils-common (0.21.2+dfsg-2) ... 159s Selecting previously unselected package fonts-glyphicons-halflings. 159s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 159s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 159s Selecting previously unselected package liberror-perl. 159s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 159s Unpacking liberror-perl (0.17030-1) ... 159s Selecting previously unselected package git-man. 159s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 159s Unpacking git-man (1:2.51.0-1ubuntu1) ... 159s Selecting previously unselected package git. 159s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_armhf.deb ... 159s Unpacking git (1:2.51.0-1ubuntu1) ... 160s Selecting previously unselected package libdatrie1:armhf. 160s Preparing to unpack .../15-libdatrie1_0.2.14-1_armhf.deb ... 160s Unpacking libdatrie1:armhf (0.2.14-1) ... 160s Selecting previously unselected package libjs-bootstrap. 160s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 160s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 160s Selecting previously unselected package libjs-jquery. 160s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 160s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 160s Selecting previously unselected package python3-configargparse. 160s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 160s Unpacking python3-configargparse (1.7-2) ... 160s Selecting previously unselected package python3-connection-pool. 160s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 160s Unpacking python3-connection-pool (0.0.3-2build1) ... 160s Selecting previously unselected package python3-datrie. 160s Preparing to unpack .../20-python3-datrie_0.8.3-2_armhf.deb ... 160s Unpacking python3-datrie (0.8.3-2) ... 160s Selecting previously unselected package python3-decorator. 160s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 160s Unpacking python3-decorator (5.2.1-2) ... 160s Selecting previously unselected package python3-roman. 160s Preparing to unpack .../22-python3-roman_5.1-1_all.deb ... 160s Unpacking python3-roman (5.1-1) ... 160s Selecting previously unselected package python3-docutils. 160s Preparing to unpack .../23-python3-docutils_0.21.2+dfsg-2_all.deb ... 160s Unpacking python3-docutils (0.21.2+dfsg-2) ... 160s Selecting previously unselected package python3-dpath. 160s Preparing to unpack .../24-python3-dpath_2.2.0-1_all.deb ... 160s Unpacking python3-dpath (2.2.0-1) ... 160s Selecting previously unselected package python3-fastjsonschema. 160s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 160s Unpacking python3-fastjsonschema (2.21.1-1) ... 160s Selecting previously unselected package python3-smmap. 160s Preparing to unpack .../26-python3-smmap_6.0.0-1_all.deb ... 160s Unpacking python3-smmap (6.0.0-1) ... 161s Selecting previously unselected package python3-gitdb. 161s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 161s Unpacking python3-gitdb (4.0.12-1) ... 161s Selecting previously unselected package python3-git. 161s Preparing to unpack .../28-python3-git_3.1.45-1_all.deb ... 161s Unpacking python3-git (3.1.45-1) ... 161s Selecting previously unselected package python3-humanfriendly. 161s Preparing to unpack .../29-python3-humanfriendly_10.0-6_all.deb ... 161s Unpacking python3-humanfriendly (10.0-6) ... 161s Selecting previously unselected package python3-platformdirs. 161s Preparing to unpack .../30-python3-platformdirs_4.4.0-1_all.deb ... 161s Unpacking python3-platformdirs (4.4.0-1) ... 161s Selecting previously unselected package python3-traitlets. 161s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 161s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 161s Selecting previously unselected package python3-jupyter-core. 161s Preparing to unpack .../32-python3-jupyter-core_5.7.2-5_all.deb ... 161s Unpacking python3-jupyter-core (5.7.2-5) ... 161s Selecting previously unselected package python3-nbformat. 161s Preparing to unpack .../33-python3-nbformat_5.9.1-1_all.deb ... 161s Unpacking python3-nbformat (5.9.1-1) ... 161s Selecting previously unselected package python3-plac. 161s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 161s Unpacking python3-plac (1.4.3-2) ... 161s Selecting previously unselected package python3-psutil. 161s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_armhf.deb ... 161s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 161s Selecting previously unselected package coinor-cbc. 161s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1_armhf.deb ... 161s Unpacking coinor-cbc (2.10.12+ds-1) ... 161s Selecting previously unselected package python3-pulp. 161s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 161s Unpacking python3-pulp (2.7.0+dfsg-4) ... 161s Selecting previously unselected package python3-ratelimiter. 161s Preparing to unpack .../38-python3-ratelimiter_1.2.0.post0-5_armhf.deb ... 161s Unpacking python3-ratelimiter (1.2.0.post0-5) ... 161s Selecting previously unselected package python3-retry. 161s Preparing to unpack .../39-python3-retry_0.9.2-4_all.deb ... 161s Unpacking python3-retry (0.9.2-4) ... 161s Selecting previously unselected package python3-wrapt. 161s Preparing to unpack .../40-python3-wrapt_1.17.3-2_armhf.deb ... 161s Unpacking python3-wrapt (1.17.3-2) ... 161s Selecting previously unselected package python3-smart-open. 161s Preparing to unpack .../41-python3-smart-open_7.1.0-1_all.deb ... 161s Unpacking python3-smart-open (7.1.0-1) ... 161s Selecting previously unselected package python3-stopit. 161s Preparing to unpack .../42-python3-stopit_1.1.2-3_all.deb ... 161s Unpacking python3-stopit (1.1.2-3) ... 161s Selecting previously unselected package python3-tabulate. 161s Preparing to unpack .../43-python3-tabulate_0.9.0-1_all.deb ... 161s Unpacking python3-tabulate (0.9.0-1) ... 161s Selecting previously unselected package python3-throttler. 161s Preparing to unpack .../44-python3-throttler_1.2.2-2_all.deb ... 161s Unpacking python3-throttler (1.2.2-2) ... 161s Selecting previously unselected package python3-toposort. 161s Preparing to unpack .../45-python3-toposort_1.10-2_all.deb ... 161s Unpacking python3-toposort (1.10-2) ... 161s Selecting previously unselected package python3-yte. 161s Preparing to unpack .../46-python3-yte_1.5.4-1_all.deb ... 161s Unpacking python3-yte (1.5.4-1) ... 161s Selecting previously unselected package snakemake. 161s Preparing to unpack .../47-snakemake_7.32.4-7_all.deb ... 161s Unpacking snakemake (7.32.4-7) ... 161s Setting up python3-toposort (1.10-2) ... 162s Setting up python3-configargparse (1.7-2) ... 162s Setting up libdatrie1:armhf (0.2.14-1) ... 162s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 162s Setting up python3-tabulate (0.9.0-1) ... 162s Setting up python3-plac (1.4.3-2) ... 162s Setting up python3-platformdirs (4.4.0-1) ... 162s Setting up python3-psutil (7.1.0-1ubuntu1) ... 162s Setting up python3-ratelimiter (1.2.0.post0-5) ... 162s Setting up liberror-perl (0.17030-1) ... 162s Setting up python3-roman (5.1-1) ... 163s Setting up python3-decorator (5.2.1-2) ... 163s Setting up libblas3:armhf (3.12.1-7) ... 163s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 163s Setting up python3-humanfriendly (10.0-6) ... 163s Setting up python3-dpath (2.2.0-1) ... 163s Setting up python3-connection-pool (0.0.3-2build1) ... 163s Setting up python3-wrapt (1.17.3-2) ... 163s Setting up python3-throttler (1.2.2-2) ... 163s Setting up python3-retry (0.9.2-4) ... 163s Setting up libgfortran5:armhf (15.2.0-9ubuntu1) ... 163s Setting up python3-fastjsonschema (2.21.1-1) ... 164s Setting up python3-stopit (1.1.2-3) ... 164s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 164s Setting up git-man (1:2.51.0-1ubuntu1) ... 164s Setting up sgml-base (1.31+nmu1) ... 164s Setting up python3-datrie (0.8.3-2) ... 164s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 164s Setting up python3-smmap (6.0.0-1) ... 164s Setting up python3-jupyter-core (5.7.2-5) ... 164s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 164s Setting up liblapack3:armhf (3.12.1-7) ... 164s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 164s Setting up python3-smart-open (7.1.0-1) ... 164s Setting up python3-nbformat (5.9.1-1) ... 165s Setting up python3-gitdb (4.0.12-1) ... 165s Setting up python3-yte (1.5.4-1) ... 165s Setting up coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 165s Setting up git (1:2.51.0-1ubuntu1) ... 165s Setting up coinor-libosi1v5:armhf (0.108.11+ds-1) ... 165s Setting up xml-core (0.19) ... 165s Setting up coinor-libclp1:armhf (1.17.10+ds-1) ... 165s Setting up python3-git (3.1.45-1) ... 165s Setting up coinor-libcgl1:armhf (0.60.9+ds-1) ... 165s Setting up coinor-libcbc3.1:armhf (2.10.12+ds-1) ... 165s Setting up coinor-cbc (2.10.12+ds-1) ... 165s Setting up python3-pulp (2.7.0+dfsg-4) ... 165s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 165s otherwise be interpreted by the Tcl shell: \ $ " [ 165s Processing triggers for man-db (2.13.1-1) ... 169s Processing triggers for libc-bin (2.42-2ubuntu2) ... 169s Processing triggers for sgml-base (1.31+nmu1) ... 169s Setting up docutils-common (0.21.2+dfsg-2) ... 169s Processing triggers for sgml-base (1.31+nmu1) ... 169s Setting up python3-docutils (0.21.2+dfsg-2) ... 169s Setting up snakemake (7.32.4-7) ... 177s autopkgtest [17:36:08]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 177s autopkgtest [17:36:08]: test command1: [----------------------- 180s Building DAG of jobs... 180s Using shell: /usr/bin/bash 180s Provided cores: 1 (use --cores to define parallelism) 180s Rules claiming more threads will be scaled down. 180s Job stats: 180s job count 180s ----- ------- 180s a 1 180s total 1 180s 180s Select jobs to execute... 180s 180s [Mon Dec 1 17:36:11 2025] 180s rule a: 180s output: test.out 180s jobid: 0 180s reason: Missing output files: test.out 180s resources: tmpdir=/tmp 180s 180s [Mon Dec 1 17:36:11 2025] 180s Finished job 0. 180s 1 of 1 steps (100%) done 180s Complete log: .snakemake/log/2025-12-01T173610.701401.snakemake.log 180s bash 180s autopkgtest [17:36:11]: test command1: -----------------------] 184s autopkgtest [17:36:15]: test command1: - - - - - - - - - - results - - - - - - - - - - 184s command1 PASS 188s autopkgtest [17:36:19]: test run-unit-test: preparing testbed 188s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 192s Reading package lists... 192s Building dependency tree... 192s Reading state information... 193s Solving dependencies... 194s The following NEW packages will be installed: 194s environment-modules fontconfig fontconfig-config fonts-dejavu-core 194s fonts-dejavu-mono glpk-utils graphviz libamd3 libaom3 libcairo2 libcdt5 194s libcgraph6 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libfreetype6 194s libgd3 libglpk40 libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 194s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 194s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblab-gamut1 liblerc4 194s libltdl7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 194s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 194s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 194s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxmu6 libxpm4 194s libxrender1 libxss1 libxt6t64 python3-ftputil python3-iniconfig 194s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 194s python3-pluggy python3-pytest python3-pytest-mock python3-pytz 194s python3-requests-mock r-base-core stress tcl8.6 unzip x11-common xdg-utils 194s zip 194s 0 upgraded, 79 newly installed, 0 to remove and 52 not upgraded. 194s Need to get 58.6 MB of archives. 194s After this operation, 167 MB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-numpy-dev armhf 1:2.3.4+ds-3ubuntu1 [140 kB] 194s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-numpy armhf 1:2.3.4+ds-3ubuntu1 [4726 kB] 195s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 195s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf tcl8.6 armhf 8.6.17+dfsg-1 [14.6 kB] 195s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf environment-modules armhf 5.6.1-1 [364 kB] 195s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 195s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 195s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 195s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 195s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 195s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.3ubuntu1 [190 kB] 195s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-9ubuntu1 [129 kB] 195s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libsuitesparseconfig7 armhf 1:7.11.0+dfsg-2 [21.1 kB] 195s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf libamd3 armhf 1:7.11.0+dfsg-2 [37.4 kB] 195s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libcolamd3 armhf 1:7.11.0+dfsg-2 [28.0 kB] 195s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-7 [40.0 kB] 195s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libglpk40 armhf 5.0-2 [325 kB] 195s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf glpk-utils armhf 5.0-2 [226 kB] 195s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf libcdt5 armhf 2.42.4-3build2 [19.3 kB] 195s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf libcgraph6 armhf 2.42.4-3build2 [38.0 kB] 195s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 195s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libaom3 armhf 3.13.1-2 [1258 kB] 195s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-aomdec armhf 1.20.2-2build1 [11.5 kB] 195s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libde265-0 armhf 1.0.16-1 [158 kB] 195s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-libde265 armhf 1.20.2-2build1 [13.2 kB] 195s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libheif1 armhf 1.20.2-2build1 [556 kB] 195s Get:27 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libimagequant0 armhf 4.4.0-3 [256 kB] 195s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 195s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 195s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 195s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 195s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 195s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 195s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 195s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libxpm4 armhf 1:3.5.17-1build2 [30.1 kB] 195s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libgd3 armhf 2.3.3-13ubuntu1 [109 kB] 195s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf libgts-0.7-5t64 armhf 0.7.6+darcs121130-5.2build1 [139 kB] 195s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 195s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 195s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 195s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 195s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 195s Get:43 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libgraphite2-3 armhf 1.3.14-11 [65.4 kB] 195s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 195s Get:45 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libthai-data all 0.1.29-2build2 [153 kB] 195s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 195s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.3-2 [217 kB] 195s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.3-2 [44.0 kB] 195s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.3-2 [25.3 kB] 195s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf libpathplan4 armhf 2.42.4-3build2 [21.6 kB] 195s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libgvc6 armhf 2.42.4-3build2 [623 kB] 195s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf libgvpr2 armhf 2.42.4-3build2 [161 kB] 195s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf liblab-gamut1 armhf 2.42.4-3build2 [1788 kB] 195s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 195s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 195s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 196s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 196s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libxmu6 armhf 2:1.1.3-3build3 [41.0 kB] 196s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf libxaw7 armhf 2:1.0.16-1 [154 kB] 196s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf graphviz armhf 2.42.4-3build2 [544 kB] 196s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 196s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 196s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 196s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 196s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 196s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ftputil all 5.1.0-1 [41.1 kB] 196s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-1 [6840 B] 196s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-4 [32.3 kB] 196s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-1ubuntu1 [8020 kB] 196s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 196s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-1 [21.0 kB] 196s Get:72 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf python3-pytest all 8.4.2-1 [268 kB] 196s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest-mock all 3.15.1-1 [11.9 kB] 196s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-requests-mock all 1.12.1-3 [17.8 kB] 196s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 196s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-28ubuntu7 [168 kB] 196s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 196s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1 [28.5 MB] 197s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf stress armhf 1.0.7-1 [19.7 kB] 198s Preconfiguring packages ... 198s Fetched 58.6 MB in 3s (17.8 MB/s) 198s Selecting previously unselected package python3-numpy-dev:armhf. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68534 files and directories currently installed.) 198s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.4+ds-3ubuntu1_armhf.deb ... 198s Unpacking python3-numpy-dev:armhf (1:2.3.4+ds-3ubuntu1) ... 198s Selecting previously unselected package python3-numpy. 198s Preparing to unpack .../01-python3-numpy_1%3a2.3.4+ds-3ubuntu1_armhf.deb ... 198s Unpacking python3-numpy (1:2.3.4+ds-3ubuntu1) ... 198s Selecting previously unselected package libtcl8.6:armhf. 198s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 198s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 198s Selecting previously unselected package tcl8.6. 198s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_armhf.deb ... 198s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 198s Selecting previously unselected package environment-modules. 198s Preparing to unpack .../04-environment-modules_5.6.1-1_armhf.deb ... 198s Unpacking environment-modules (5.6.1-1) ... 198s Selecting previously unselected package libfreetype6:armhf. 198s Preparing to unpack .../05-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 198s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 198s Selecting previously unselected package fonts-dejavu-mono. 198s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8build1_all.deb ... 198s Unpacking fonts-dejavu-mono (2.37-8build1) ... 198s Selecting previously unselected package fonts-dejavu-core. 198s Preparing to unpack .../07-fonts-dejavu-core_2.37-8build1_all.deb ... 198s Unpacking fonts-dejavu-core (2.37-8build1) ... 198s Selecting previously unselected package fontconfig-config. 198s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 199s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 199s Selecting previously unselected package libfontconfig1:armhf. 204s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 204s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 204s Selecting previously unselected package fontconfig. 204s Preparing to unpack .../10-fontconfig_2.15.0-2.3ubuntu1_armhf.deb ... 204s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 204s Selecting previously unselected package libgomp1:armhf. 204s Preparing to unpack .../11-libgomp1_15.2.0-9ubuntu1_armhf.deb ... 204s Unpacking libgomp1:armhf (15.2.0-9ubuntu1) ... 204s Selecting previously unselected package libsuitesparseconfig7:armhf. 204s Preparing to unpack .../12-libsuitesparseconfig7_1%3a7.11.0+dfsg-2_armhf.deb ... 204s Unpacking libsuitesparseconfig7:armhf (1:7.11.0+dfsg-2) ... 204s Selecting previously unselected package libamd3:armhf. 204s Preparing to unpack .../13-libamd3_1%3a7.11.0+dfsg-2_armhf.deb ... 204s Unpacking libamd3:armhf (1:7.11.0+dfsg-2) ... 204s Selecting previously unselected package libcolamd3:armhf. 204s Preparing to unpack .../14-libcolamd3_1%3a7.11.0+dfsg-2_armhf.deb ... 204s Unpacking libcolamd3:armhf (1:7.11.0+dfsg-2) ... 204s Selecting previously unselected package libltdl7:armhf. 204s Preparing to unpack .../15-libltdl7_2.5.4-7_armhf.deb ... 204s Unpacking libltdl7:armhf (2.5.4-7) ... 204s Selecting previously unselected package libglpk40:armhf. 204s Preparing to unpack .../16-libglpk40_5.0-2_armhf.deb ... 204s Unpacking libglpk40:armhf (5.0-2) ... 204s Selecting previously unselected package glpk-utils. 204s Preparing to unpack .../17-glpk-utils_5.0-2_armhf.deb ... 204s Unpacking glpk-utils (5.0-2) ... 204s Selecting previously unselected package libcdt5:armhf. 204s Preparing to unpack .../18-libcdt5_2.42.4-3build2_armhf.deb ... 204s Unpacking libcdt5:armhf (2.42.4-3build2) ... 204s Selecting previously unselected package libcgraph6:armhf. 204s Preparing to unpack .../19-libcgraph6_2.42.4-3build2_armhf.deb ... 204s Unpacking libcgraph6:armhf (2.42.4-3build2) ... 204s Selecting previously unselected package libsharpyuv0:armhf. 204s Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_armhf.deb ... 204s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 204s Selecting previously unselected package libaom3:armhf. 204s Preparing to unpack .../21-libaom3_3.13.1-2_armhf.deb ... 204s Unpacking libaom3:armhf (3.13.1-2) ... 204s Selecting previously unselected package libheif-plugin-aomdec:armhf. 204s Preparing to unpack .../22-libheif-plugin-aomdec_1.20.2-2build1_armhf.deb ... 204s Unpacking libheif-plugin-aomdec:armhf (1.20.2-2build1) ... 204s Selecting previously unselected package libde265-0:armhf. 204s Preparing to unpack .../23-libde265-0_1.0.16-1_armhf.deb ... 204s Unpacking libde265-0:armhf (1.0.16-1) ... 204s Selecting previously unselected package libheif-plugin-libde265:armhf. 204s Preparing to unpack .../24-libheif-plugin-libde265_1.20.2-2build1_armhf.deb ... 204s Unpacking libheif-plugin-libde265:armhf (1.20.2-2build1) ... 204s Selecting previously unselected package libheif1:armhf. 204s Preparing to unpack .../25-libheif1_1.20.2-2build1_armhf.deb ... 204s Unpacking libheif1:armhf (1.20.2-2build1) ... 204s Selecting previously unselected package libimagequant0:armhf. 204s Preparing to unpack .../26-libimagequant0_4.4.0-3_armhf.deb ... 204s Unpacking libimagequant0:armhf (4.4.0-3) ... 204s Selecting previously unselected package libjpeg-turbo8:armhf. 204s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 204s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 204s Selecting previously unselected package libjpeg8:armhf. 204s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_armhf.deb ... 204s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 204s Selecting previously unselected package libdeflate0:armhf. 204s Preparing to unpack .../29-libdeflate0_1.23-2_armhf.deb ... 204s Unpacking libdeflate0:armhf (1.23-2) ... 204s Selecting previously unselected package libjbig0:armhf. 204s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 204s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 204s Selecting previously unselected package liblerc4:armhf. 204s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 204s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 204s Selecting previously unselected package libwebp7:armhf. 204s Preparing to unpack .../32-libwebp7_1.5.0-0.1_armhf.deb ... 204s Unpacking libwebp7:armhf (1.5.0-0.1) ... 204s Selecting previously unselected package libtiff6:armhf. 204s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 204s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 204s Selecting previously unselected package libxpm4:armhf. 204s Preparing to unpack .../34-libxpm4_1%3a3.5.17-1build2_armhf.deb ... 204s Unpacking libxpm4:armhf (1:3.5.17-1build2) ... 204s Selecting previously unselected package libgd3:armhf. 204s Preparing to unpack .../35-libgd3_2.3.3-13ubuntu1_armhf.deb ... 204s Unpacking libgd3:armhf (2.3.3-13ubuntu1) ... 204s Selecting previously unselected package libgts-0.7-5t64:armhf. 204s Preparing to unpack .../36-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_armhf.deb ... 204s Unpacking libgts-0.7-5t64:armhf (0.7.6+darcs121130-5.2build1) ... 204s Selecting previously unselected package libpixman-1-0:armhf. 204s Preparing to unpack .../37-libpixman-1-0_0.46.4-1_armhf.deb ... 204s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 204s Selecting previously unselected package libxcb-render0:armhf. 204s Preparing to unpack .../38-libxcb-render0_1.17.0-2build1_armhf.deb ... 204s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 204s Selecting previously unselected package libxcb-shm0:armhf. 204s Preparing to unpack .../39-libxcb-shm0_1.17.0-2build1_armhf.deb ... 204s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 204s Selecting previously unselected package libxrender1:armhf. 204s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_armhf.deb ... 204s Unpacking libxrender1:armhf (1:0.9.12-1) ... 204s Selecting previously unselected package libcairo2:armhf. 204s Preparing to unpack .../41-libcairo2_1.18.4-1build1_armhf.deb ... 204s Unpacking libcairo2:armhf (1.18.4-1build1) ... 204s Selecting previously unselected package libgraphite2-3:armhf. 204s Preparing to unpack .../42-libgraphite2-3_1.3.14-11_armhf.deb ... 204s Unpacking libgraphite2-3:armhf (1.3.14-11) ... 204s Selecting previously unselected package libharfbuzz0b:armhf. 204s Preparing to unpack .../43-libharfbuzz0b_12.1.0-1_armhf.deb ... 204s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 204s Selecting previously unselected package libthai-data. 204s Preparing to unpack .../44-libthai-data_0.1.29-2build2_all.deb ... 204s Unpacking libthai-data (0.1.29-2build2) ... 204s Selecting previously unselected package libthai0:armhf. 204s Preparing to unpack .../45-libthai0_0.1.29-2build1_armhf.deb ... 204s Unpacking libthai0:armhf (0.1.29-2build1) ... 204s Selecting previously unselected package libpango-1.0-0:armhf. 204s Preparing to unpack .../46-libpango-1.0-0_1.56.3-2_armhf.deb ... 204s Unpacking libpango-1.0-0:armhf (1.56.3-2) ... 204s Selecting previously unselected package libpangoft2-1.0-0:armhf. 204s Preparing to unpack .../47-libpangoft2-1.0-0_1.56.3-2_armhf.deb ... 204s Unpacking libpangoft2-1.0-0:armhf (1.56.3-2) ... 204s Selecting previously unselected package libpangocairo-1.0-0:armhf. 204s Preparing to unpack .../48-libpangocairo-1.0-0_1.56.3-2_armhf.deb ... 204s Unpacking libpangocairo-1.0-0:armhf (1.56.3-2) ... 204s Selecting previously unselected package libpathplan4:armhf. 204s Preparing to unpack .../49-libpathplan4_2.42.4-3build2_armhf.deb ... 204s Unpacking libpathplan4:armhf (2.42.4-3build2) ... 204s Selecting previously unselected package libgvc6. 204s Preparing to unpack .../50-libgvc6_2.42.4-3build2_armhf.deb ... 204s Unpacking libgvc6 (2.42.4-3build2) ... 204s Selecting previously unselected package libgvpr2:armhf. 204s Preparing to unpack .../51-libgvpr2_2.42.4-3build2_armhf.deb ... 204s Unpacking libgvpr2:armhf (2.42.4-3build2) ... 204s Selecting previously unselected package liblab-gamut1:armhf. 204s Preparing to unpack .../52-liblab-gamut1_2.42.4-3build2_armhf.deb ... 204s Unpacking liblab-gamut1:armhf (2.42.4-3build2) ... 204s Selecting previously unselected package x11-common. 204s Preparing to unpack .../53-x11-common_1%3a7.7+24ubuntu1_all.deb ... 204s Unpacking x11-common (1:7.7+24ubuntu1) ... 204s Selecting previously unselected package libice6:armhf. 204s Preparing to unpack .../54-libice6_2%3a1.1.1-1_armhf.deb ... 204s Unpacking libice6:armhf (2:1.1.1-1) ... 204s Selecting previously unselected package libsm6:armhf. 204s Preparing to unpack .../55-libsm6_2%3a1.2.6-1_armhf.deb ... 204s Unpacking libsm6:armhf (2:1.2.6-1) ... 204s Selecting previously unselected package libxt6t64:armhf. 204s Preparing to unpack .../56-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 204s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 204s Selecting previously unselected package libxmu6:armhf. 204s Preparing to unpack .../57-libxmu6_2%3a1.1.3-3build3_armhf.deb ... 204s Unpacking libxmu6:armhf (2:1.1.3-3build3) ... 204s Selecting previously unselected package libxaw7:armhf. 204s Preparing to unpack .../58-libxaw7_2%3a1.0.16-1_armhf.deb ... 204s Unpacking libxaw7:armhf (2:1.0.16-1) ... 204s Selecting previously unselected package graphviz. 204s Preparing to unpack .../59-graphviz_2.42.4-3build2_armhf.deb ... 204s Unpacking graphviz (2.42.4-3build2) ... 204s Selecting previously unselected package libpaper2:armhf. 204s Preparing to unpack .../60-libpaper2_2.2.5-0.3_armhf.deb ... 204s Unpacking libpaper2:armhf (2.2.5-0.3) ... 204s Selecting previously unselected package libpaper-utils. 204s Preparing to unpack .../61-libpaper-utils_2.2.5-0.3_armhf.deb ... 204s Unpacking libpaper-utils (2.2.5-0.3) ... 204s Selecting previously unselected package libxft2:armhf. 204s Preparing to unpack .../62-libxft2_2.3.6-1build1_armhf.deb ... 204s Unpacking libxft2:armhf (2.3.6-1build1) ... 204s Selecting previously unselected package libxss1:armhf. 204s Preparing to unpack .../63-libxss1_1%3a1.2.3-1build3_armhf.deb ... 204s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 204s Selecting previously unselected package libtk8.6:armhf. 204s Preparing to unpack .../64-libtk8.6_8.6.17-1_armhf.deb ... 204s Unpacking libtk8.6:armhf (8.6.17-1) ... 204s Selecting previously unselected package python3-ftputil. 204s Preparing to unpack .../65-python3-ftputil_5.1.0-1_all.deb ... 204s Unpacking python3-ftputil (5.1.0-1) ... 204s Selecting previously unselected package python3-iniconfig. 204s Preparing to unpack .../66-python3-iniconfig_2.1.0-1_all.deb ... 204s Unpacking python3-iniconfig (2.1.0-1) ... 204s Selecting previously unselected package python3-pytz. 204s Preparing to unpack .../67-python3-pytz_2025.2-4_all.deb ... 204s Unpacking python3-pytz (2025.2-4) ... 204s Selecting previously unselected package python3-pandas-lib:armhf. 204s Preparing to unpack .../68-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_armhf.deb ... 204s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-1ubuntu1) ... 204s Selecting previously unselected package python3-pandas. 204s Preparing to unpack .../69-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 204s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 204s Selecting previously unselected package python3-pluggy. 204s Preparing to unpack .../70-python3-pluggy_1.6.0-1_all.deb ... 204s Unpacking python3-pluggy (1.6.0-1) ... 204s Selecting previously unselected package python3-pytest. 204s Preparing to unpack .../71-python3-pytest_8.4.2-1_all.deb ... 204s Unpacking python3-pytest (8.4.2-1) ... 204s Selecting previously unselected package python3-pytest-mock. 204s Preparing to unpack .../72-python3-pytest-mock_3.15.1-1_all.deb ... 204s Unpacking python3-pytest-mock (3.15.1-1) ... 204s Selecting previously unselected package python3-requests-mock. 204s Preparing to unpack .../73-python3-requests-mock_1.12.1-3_all.deb ... 204s Unpacking python3-requests-mock (1.12.1-3) ... 204s Selecting previously unselected package zip. 204s Preparing to unpack .../74-zip_3.0-15ubuntu2_armhf.deb ... 204s Unpacking zip (3.0-15ubuntu2) ... 204s Selecting previously unselected package unzip. 204s Preparing to unpack .../75-unzip_6.0-28ubuntu7_armhf.deb ... 204s Unpacking unzip (6.0-28ubuntu7) ... 204s Selecting previously unselected package xdg-utils. 204s Preparing to unpack .../76-xdg-utils_1.2.1-2ubuntu1_all.deb ... 204s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 204s Selecting previously unselected package r-base-core. 204s Preparing to unpack .../77-r-base-core_4.5.2-1_armhf.deb ... 204s Unpacking r-base-core (4.5.2-1) ... 204s Selecting previously unselected package stress. 204s Preparing to unpack .../78-stress_1.0.7-1_armhf.deb ... 204s Unpacking stress (1.0.7-1) ... 204s Setting up libgraphite2-3:armhf (1.3.14-11) ... 204s Setting up python3-iniconfig (2.1.0-1) ... 204s Setting up libpixman-1-0:armhf (0.46.4-1) ... 204s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 204s Setting up libaom3:armhf (3.13.1-2) ... 204s Setting up python3-ftputil (5.1.0-1) ... 204s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 204s Setting up libxpm4:armhf (1:3.5.17-1build2) ... 204s Setting up libxrender1:armhf (1:0.9.12-1) ... 204s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 204s Setting up stress (1.0.7-1) ... 204s Setting up unzip (6.0-28ubuntu7) ... 204s Setting up liblab-gamut1:armhf (2.42.4-3build2) ... 204s Setting up x11-common (1:7.7+24ubuntu1) ... 204s Setting up libdeflate0:armhf (1.23-2) ... 204s Setting up python3-pytz (2025.2-4) ... 204s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 204s Setting up libgomp1:armhf (15.2.0-9ubuntu1) ... 204s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 204s Setting up zip (3.0-15ubuntu2) ... 204s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 204s Setting up libpathplan4:armhf (2.42.4-3build2) ... 204s Setting up python3-requests-mock (1.12.1-3) ... 204s Setting up libimagequant0:armhf (4.4.0-3) ... 204s Setting up fonts-dejavu-mono (2.37-8build1) ... 204s Setting up python3-numpy-dev:armhf (1:2.3.4+ds-3ubuntu1) ... 204s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 204s Setting up fonts-dejavu-core (2.37-8build1) ... 204s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 204s Setting up python3-numpy (1:2.3.4+ds-3ubuntu1) ... 205s Setting up libltdl7:armhf (2.5.4-7) ... 205s Setting up python3-pluggy (1.6.0-1) ... 205s Setting up libwebp7:armhf (1.5.0-0.1) ... 205s Setting up libsuitesparseconfig7:armhf (1:7.11.0+dfsg-2) ... 205s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 205s Setting up libthai-data (0.1.29-2build2) ... 205s Setting up libgts-0.7-5t64:armhf (0.7.6+darcs121130-5.2build1) ... 205s Setting up libcdt5:armhf (2.42.4-3build2) ... 205s Setting up libcgraph6:armhf (2.42.4-3build2) ... 205s Setting up libxss1:armhf (1:1.2.3-1build3) ... 205s Setting up libpaper2:armhf (2.2.5-0.3) ... 205s Setting up libde265-0:armhf (1.0.16-1) ... 205s Setting up xdg-utils (1.2.1-2ubuntu1) ... 205s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 205s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 205s Setting up libice6:armhf (2:1.1.1-1) ... 205s Setting up tcl8.6 (8.6.17+dfsg-1) ... 205s Setting up libamd3:armhf (1:7.11.0+dfsg-2) ... 205s Setting up libcolamd3:armhf (1:7.11.0+dfsg-2) ... 205s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 205s Setting up python3-pytest (8.4.2-1) ... 205s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-1ubuntu1) ... 205s Setting up libpaper-utils (2.2.5-0.3) ... 205s Setting up libthai0:armhf (0.1.29-2build1) ... 205s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 211s Setting up libglpk40:armhf (5.0-2) ... 211s Setting up glpk-utils (5.0-2) ... 211s Setting up libgvpr2:armhf (2.42.4-3build2) ... 211s Setting up python3-pytest-mock (3.15.1-1) ... 211s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 211s Setting up environment-modules (5.6.1-1) ... 211s Setting up libsm6:armhf (2:1.2.6-1) ... 211s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 211s Setting up libxmu6:armhf (2:1.1.3-3build3) ... 211s Setting up libxaw7:armhf (2:1.0.16-1) ... 211s Setting up libheif-plugin-aomdec:armhf (1.20.2-2build1) ... 211s Setting up libheif-plugin-libde265:armhf (1.20.2-2build1) ... 211s Setting up libheif1:armhf (1.20.2-2build1) ... 211s Processing triggers for man-db (2.13.1-1) ... 212s Processing triggers for sgml-base (1.31+nmu1) ... 212s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 212s Processing triggers for install-info (7.2-5) ... 212s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 214s Regenerating fonts cache... done. 214s Setting up libxft2:armhf (2.3.6-1build1) ... 214s Setting up libtk8.6:armhf (8.6.17-1) ... 214s Processing triggers for libc-bin (2.42-2ubuntu2) ... 214s Setting up libpango-1.0-0:armhf (1.56.3-2) ... 214s Setting up libcairo2:armhf (1.18.4-1build1) ... 214s Setting up libgd3:armhf (2.3.3-13ubuntu1) ... 214s Setting up libpangoft2-1.0-0:armhf (1.56.3-2) ... 214s Setting up libpangocairo-1.0-0:armhf (1.56.3-2) ... 214s Setting up r-base-core (4.5.2-1) ... 214s Creating config file /etc/R/Renviron with new version 215s Setting up libgvc6 (2.42.4-3build2) ... 215s Setting up graphviz (2.42.4-3build2) ... 215s Processing triggers for libc-bin (2.42-2ubuntu2) ... 223s autopkgtest [17:36:54]: test run-unit-test: [----------------------- 225s ============================= test session starts ============================== 225s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3 225s cachedir: .pytest_cache 225s rootdir: /tmp/autopkgtest.1XyFWU/autopkgtest_tmp 225s plugins: typeguard-4.4.2, mock-3.15.1, requests_mock-1.12.1 230s collecting ... collected 395 items / 97 deselected / 298 selected 230s 230s tests/test_expand.py::test_simple_expand PASSED [ 0%] 230s tests/test_expand.py::test_allow_missing PASSED [ 0%] 230s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 230s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 230s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 230s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 230s tests/test_io.py::test_expand PASSED [ 2%] 230s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 2%] 230s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 230s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 230s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 230s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 230s tests/test_linting.py::test_lint[absolute_paths-positive] SKIPPED (T...) [ 4%] 230s tests/test_linting.py::test_lint[absolute_paths-negative] SKIPPED (T...) [ 4%] 230s tests/test_linting.py::test_lint[dynamic-positive] SKIPPED (This tes...) [ 5%] 230s tests/test_linting.py::test_lint[dynamic-negative] SKIPPED (This tes...) [ 5%] 230s tests/test_linting.py::test_lint[envvars-positive] SKIPPED (This tes...) [ 5%] 230s tests/test_linting.py::test_lint[envvars-negative] SKIPPED (This tes...) [ 6%] 230s tests/test_linting.py::test_lint[iofile_by_index-positive] SKIPPED (...) [ 6%] 230s tests/test_linting.py::test_lint[iofile_by_index-negative] SKIPPED (...) [ 6%] 230s tests/test_linting.py::test_lint[log_directive-positive] SKIPPED (Th...) [ 7%] 230s tests/test_linting.py::test_lint[log_directive-negative] SKIPPED (Th...) [ 7%] 230s tests/test_linting.py::test_lint[long_run-positive] SKIPPED (This te...) [ 7%] 230s tests/test_linting.py::test_lint[long_run-negative] SKIPPED (This te...) [ 8%] 230s tests/test_linting.py::test_lint[missing_software_definition-positive] SKIPPED [ 8%] 230s tests/test_linting.py::test_lint[missing_software_definition-negative] SKIPPED [ 8%] 230s tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 9%] 230s tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 9%] 230s tests/test_linting.py::test_lint[not_used_params-positive] SKIPPED (...) [ 9%] 230s tests/test_linting.py::test_lint[not_used_params-negative] SKIPPED (...) [ 10%] 230s tests/test_linting.py::test_lint[params_prefix-positive] SKIPPED (Th...) [ 10%] 230s tests/test_linting.py::test_lint[params_prefix-negative] SKIPPED (Th...) [ 10%] 230s tests/test_linting.py::test_lint[path_add-positive] SKIPPED (This te...) [ 11%] 230s tests/test_linting.py::test_lint[path_add-negative] SKIPPED (This te...) [ 11%] 230s tests/test_linting.py::test_lint[singularity-positive] SKIPPED (This...) [ 11%] 230s tests/test_linting.py::test_lint[singularity-negative] SKIPPED (This...) [ 12%] 230s tests/test_linting.py::test_lint[tab_usage-positive] SKIPPED (This t...) [ 12%] 230s tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED (This t...) [ 12%] 230s tests/test_linting.py::test_lint[version-positive] SKIPPED (This tes...) [ 13%] 230s tests/test_linting.py::test_lint[version-negative] SKIPPED (This tes...) [ 13%] 230s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 231s tests/test_schema.py::test_config PASSED [ 14%] 231s tests/test_schema.py::test_config_ref PASSED [ 14%] 231s tests/test_schema.py::test_dataframe PASSED [ 14%] 231s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 231s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 231s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 231s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 231s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) [ 16%] 231s tests/testapi.py::test_keep_logger PASSED [ 16%] 231s tests/testapi.py::test_workflow_calling SKIPPED (This test is known ...) [ 17%] 232s tests/testapi.py::test_run_script_directive PASSED [ 17%] 232s tests/testapi.py::test_run_script_directive_async PASSED [ 17%] 233s tests/testapi.py::test_dicts_in_config PASSED [ 18%] 233s tests/testapi.py::test_lockexception PASSED [ 18%] 234s tests/tests.py::test_list_untracked PASSED [ 18%] 235s tests/tests.py::test_delete_all_output PASSED [ 19%] 236s tests/tests.py::test_github_issue_14 PASSED [ 19%] 236s tests/tests.py::test_issue956 PASSED [ 19%] 236s tests/tests.py::test01 PASSED [ 20%] 236s tests/tests.py::test02 PASSED [ 20%] 236s tests/tests.py::test03 PASSED [ 20%] 236s tests/tests.py::test04 PASSED [ 21%] 238s tests/tests.py::test05 PASSED [ 21%] 238s tests/tests.py::test06 PASSED [ 21%] 238s tests/tests.py::test07 PASSED [ 22%] 238s tests/tests.py::test08 PASSED [ 22%] 238s tests/tests.py::test09 PASSED [ 22%] 239s tests/tests.py::test10 PASSED [ 23%] 239s tests/tests.py::test11 PASSED [ 23%] 239s tests/tests.py::test12 PASSED [ 23%] 239s tests/tests.py::test13 PASSED [ 24%] 290s tests/tests.py::test14 PASSED [ 24%] 340s tests/tests.py::test_cluster_statusscript PASSED [ 24%] 362s tests/tests.py::test_cluster_cancelscript PASSED [ 25%] 383s tests/tests.py::test_cluster_sidecar PASSED [ 25%] 425s tests/tests.py::test_cluster_cancelscript_nargs1 PASSED [ 25%] 445s tests/tests.py::test_cluster_statusscript_multi PASSED [ 26%] 445s tests/tests.py::test15 PASSED [ 26%] 445s tests/tests.py::test_glpk_solver PASSED [ 26%] 445s tests/tests.py::test_coin_solver PASSED [ 27%] 445s tests/tests.py::test_directory PASSED [ 27%] 446s tests/tests.py::test_directory2 PASSED [ 27%] 447s tests/tests.py::test_dynamic PASSED [ 28%] 447s tests/tests.py::test_params PASSED [ 28%] 447s tests/tests.py::test_same_wildcard PASSED [ 28%] 448s tests/tests.py::test_conditional PASSED [ 29%] 448s tests/tests.py::test_unpack_dict PASSED [ 29%] 448s tests/tests.py::test_unpack_list PASSED [ 29%] 448s tests/tests.py::test_shell PASSED [ 30%] 489s tests/tests.py::test_temp PASSED [ 30%] 489s tests/tests.py::test_keyword_list PASSED [ 30%] 489s tests/tests.py::test_subworkflows PASSED [ 31%] 489s tests/tests.py::test_globwildcards PASSED [ 31%] 489s tests/tests.py::test_local_import PASSED [ 31%] 490s tests/tests.py::test_ruledeps PASSED [ 32%] 490s tests/tests.py::test_persistent_dict PASSED [ 32%] 490s tests/tests.py::test_touch PASSED [ 32%] 490s tests/tests.py::test_touch_flag_with_directories PASSED [ 33%] 490s tests/tests.py::test_config PASSED [ 33%] 490s tests/tests.py::test_update_config PASSED [ 33%] 492s tests/tests.py::test_config_merging PASSED [ 34%] 492s tests/tests.py::test_wildcard_keyword PASSED [ 34%] 514s tests/tests.py::test_benchmark PASSED [ 34%] 514s tests/tests.py::test_temp_expand PASSED [ 35%] 514s tests/tests.py::test_wildcard_count_ambiguity PASSED [ 35%] 514s tests/tests.py::test_srcdir PASSED [ 35%] 514s tests/tests.py::test_multiple_includes PASSED [ 36%] 514s tests/tests.py::test_name_override PASSED [ 36%] 514s tests/tests.py::test_yaml_config PASSED [ 36%] 564s tests/tests.py::test_cluster_sync PASSED [ 37%] 564s tests/tests.py::test_symlink_temp SKIPPED (This does not work reliab...) [ 37%] 564s tests/tests.py::test_empty_include PASSED [ 37%] 567s tests/tests.py::test_shadow PASSED [ 38%] 568s tests/tests.py::test_shadow_copy PASSED [ 38%] 568s tests/tests.py::test_shadow_prefix PASSED [ 38%] 588s tests/tests.py::test_shadow_prefix_qsub PASSED [ 39%] 589s tests/tests.py::test_shadowed_log PASSED [ 39%] 589s tests/tests.py::test_until PASSED [ 39%] 590s tests/tests.py::test_omitfrom PASSED [ 40%] 591s tests/tests.py::test_nonstr_params PASSED [ 40%] 593s tests/tests.py::test_delete_output PASSED [ 40%] 593s tests/tests.py::test_input_generator PASSED [ 41%] 594s tests/tests.py::test_protected_symlink_output PASSED [ 41%] 594s tests/tests.py::test_issue328 PASSED [ 41%] 594s tests/tests.py::test_get_log_none PASSED [ 42%] 594s tests/tests.py::test_get_log_both PASSED [ 42%] 594s tests/tests.py::test_get_log_stderr PASSED [ 42%] 595s tests/tests.py::test_get_log_stdout PASSED [ 43%] 595s tests/tests.py::test_get_log_complex PASSED [ 43%] 595s tests/tests.py::test_spaces_in_fnames PASSED [ 43%] 595s tests/tests.py::test_deferred_func_eval PASSED [ 44%] 595s tests/tests.py::test_format_params PASSED [ 44%] 596s tests/tests.py::test_rule_defined_in_for_loop PASSED [ 44%] 596s tests/tests.py::test_issue381 PASSED [ 45%] 596s tests/tests.py::test_format_wildcards PASSED [ 45%] 596s tests/tests.py::test_with_parentheses PASSED [ 45%] 596s tests/tests.py::test_dup_out_patterns PASSED [ 46%] 617s tests/tests.py::test_restartable_job_cmd_exit_1_no_restart PASSED [ 46%] 647s tests/tests.py::test_restartable_job_cmd_exit_1_one_restart PASSED [ 46%] 687s tests/tests.py::test_restartable_job_qsub_exit_1 PASSED [ 47%] 687s tests/tests.py::test_threads PASSED [ 47%] 687s tests/tests.py::test_threads0 PASSED [ 47%] 688s tests/tests.py::test_dynamic_temp PASSED [ 48%] 688s tests/tests.py::test_issue260 PASSED [ 48%] 689s tests/tests.py::test_run_namedlist PASSED [ 48%] 689s tests/tests.py::test_gs_requester_pays SKIPPED (Need to choose how t...) [ 49%] 690s tests/tests.py::test_profile PASSED [ 49%] 690s tests/tests.py::test_issue612 PASSED [ 50%] 690s tests/tests.py::test_bash PASSED [ 50%] 690s tests/tests.py::test_inoutput_is_path PASSED [ 50%] 690s tests/tests.py::test_log_input PASSED [ 51%] 690s tests/tests.py::test_issue805 PASSED [ 51%] 690s tests/tests.py::test_issue823_1 PASSED [ 51%] 691s tests/tests.py::test_issue823_2 PASSED [ 52%] 691s tests/tests.py::test_issue823_3 PASSED [ 52%] 692s tests/tests.py::test_pathlib PASSED [ 52%] 692s tests/tests.py::test_pathlib_missing_file PASSED [ 53%] 732s tests/tests.py::test_group_jobs PASSED [ 53%] 752s tests/tests.py::test_group_jobs_attempts PASSED [ 53%] 772s tests/tests.py::test_group_jobs_resources PASSED [ 54%] 792s tests/tests.py::test_group_jobs_resources_with_max_threads PASSED [ 54%] 812s tests/tests.py::test_group_jobs_resources_with_limited_resources PASSED [ 54%] 832s tests/tests.py::test_global_resource_limits_limit_scheduling_of_groups PASSED [ 55%] 852s tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 873s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 893s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 913s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 933s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 953s tests/tests.py::test_group_job_fail PASSED [ 57%] 953s tests/tests.py::test_validate PASSED [ 57%] 953s tests/tests.py::test_validate_fail PASSED [ 57%] 953s tests/tests.py::test_issue854 PASSED [ 58%] 984s tests/tests.py::test_issue850 PASSED [ 58%] 1014s tests/tests.py::test_issue860 PASSED [ 58%] 1014s tests/tests.py::test_issue894 PASSED [ 59%] 1014s tests/tests.py::test_issue584 PASSED [ 59%] 1014s tests/tests.py::test_issue912 PASSED [ 59%] 1044s tests/tests.py::test_job_properties PASSED [ 60%] 1044s tests/tests.py::test_issue916 PASSED [ 60%] 1084s tests/tests.py::test_issue930 PASSED [ 60%] 1084s tests/tests.py::test_issue1037 PASSED [ 61%] 1085s tests/tests.py::test_issue1046 PASSED [ 61%] 1085s tests/tests.py::test_checkpoints PASSED [ 61%] 1085s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 1086s tests/tests.py::test_issue1092 PASSED [ 62%] 1086s tests/tests.py::test_issue958 PASSED [ 62%] 1086s tests/tests.py::test_issue471 PASSED [ 63%] 1086s tests/tests.py::test_issue1085 PASSED [ 63%] 1086s tests/tests.py::test_expand_flag PASSED [ 63%] 1086s tests/tests.py::test_tmpdir PASSED [ 64%] 1087s tests/tests.py::test_tmpdir_default PASSED [ 64%] 1087s tests/tests.py::test_issue1284 PASSED [ 64%] 1087s tests/tests.py::test_issue1281 PASSED [ 65%] 1088s tests/tests.py::test_filegraph PASSED [ 65%] 1088s tests/tests.py::test_batch PASSED [ 65%] 1088s tests/tests.py::test_batch_final PASSED [ 66%] 1088s tests/tests.py::test_batch_fail PASSED [ 66%] 1088s tests/tests.py::test_github_issue52 PASSED [ 66%] 1088s tests/tests.py::test_envvars PASSED [ 67%] 1088s tests/tests.py::test_github_issue105 PASSED [ 67%] 1088s tests/tests.py::test_github_issue413 PASSED [ 67%] 1089s tests/tests.py::test_github_issue627 PASSED [ 68%] 1090s tests/tests.py::test_github_issue727 PASSED [ 68%] 1091s tests/tests.py::test_github_issue988 PASSED [ 68%] 1091s tests/tests.py::test_output_file_cache PASSED [ 69%] 1091s tests/tests.py::test_multiext PASSED [ 69%] 1091s tests/tests.py::test_core_dependent_threads PASSED [ 69%] 1091s tests/tests.py::TestParseCoresJobs::test_no_exec[input0-output0] PASSED [ 70%] 1091s tests/tests.py::TestParseCoresJobs::test_no_exec[input1-output1] PASSED [ 70%] 1091s tests/tests.py::TestParseCoresJobs::test_no_exec[input2-output2] PASSED [ 70%] 1091s tests/tests.py::TestParseCoresJobs::test_no_exec[input3-output3] PASSED [ 71%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input0-output0] PASSED [ 71%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input1-output1] PASSED [ 71%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1091s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1091s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1092s tests/tests.py::test_linting PASSED [ 76%] 1122s tests/tests.py::test_string_resources PASSED [ 76%] 1122s tests/tests.py::test_github_issue456 PASSED [ 76%] 1122s tests/tests.py::test_scatter_gather PASSED [ 77%] 1122s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1122s tests/tests.py::test_github_issue640 PASSED [ 77%] 1124s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1124s tests/tests.py::test_metadata_migration PASSED [ 78%] 1127s tests/tests.py::test_paramspace PASSED [ 78%] 1131s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1150s tests/tests.py::test_github_issue806 PASSED [ 79%] 1150s tests/tests.py::test_long_shell PASSED [ 79%] 1150s tests/tests.py::test_modules_all PASSED [ 80%] 1150s tests/tests.py::test_module_nested PASSED [ 80%] 1151s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1151s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1151s tests/tests.py::test_modules_specific PASSED [ 81%] 1151s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1151s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1151s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1151s tests/tests.py::test_handover PASSED [ 82%] 1151s tests/tests.py::test_source_path PASSED [ 83%] 1151s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1151s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1151s tests/tests.py::test_set_resources PASSED [ 84%] 1152s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1152s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1153s tests/tests.py::test_all_temp PASSED [ 85%] 1153s tests/tests.py::test_strict_mode PASSED [ 85%] 1173s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1174s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1194s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1194s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1278s tests/tests.py::test_issue1331 PASSED [ 87%] 1278s tests/tests.py::test_default_target PASSED [ 87%] 1278s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1281s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1281s tests/tests.py::test_template_engine PASSED [ 88%] 1281s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1301s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1303s tests/tests.py::test_service_jobs PASSED [ 89%] 1303s tests/tests.py::test_incomplete_params PASSED [ 89%] 1304s tests/tests.py::test_github_issue261 PASSED [ 90%] 1304s tests/tests.py::test_pipe_depend PASSED [ 90%] 1304s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1304s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1305s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1305s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1305s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1305s tests/tests.py::test_lazy_resources PASSED [ 92%] 1305s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1305s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1305s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1305s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1305s tests/tests.py::test_ensure_success PASSED [ 94%] 1305s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1306s tests/tests.py::test_fstring PASSED [ 94%] 1317s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1318s tests/tests.py::test_retries PASSED [ 95%] 1319s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1319s tests/tests.py::test_module_input_func PASSED [ 96%] 1319s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1319s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1320s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1320s tests/tests.py::test_github_issue929 PASSED [ 97%] 1321s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1321s tests/tests.py::test_inferred_resources PASSED [ 98%] 1322s tests/tests.py::test_workflow_profile PASSED [ 98%] 1322s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1322s tests/tests.py::test_localrule PASSED [ 99%] 1323s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1323s tests/tests.py::test_config_yte PASSED [100%] 1323s 1323s =============================== warnings summary =============================== 1323s tests/test_schema.py: 12 warnings 1323s tests/tests.py: 6 warnings 1323s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1323s from jsonschema import validators, RefResolver 1323s 1323s tests/testapi.py::test_keep_logger 1323s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1323s import pkg_resources 1323s 1323s tests/testapi.py::test_lockexception 1323s /usr/lib/python3/dist-packages/_pytest/python.py:161: PytestReturnNotNoneWarning: Test functions should return None, but tests/testapi.py::test_lockexception returned . 1323s Did you mean to use `assert` instead of `return`? 1323s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 1323s warnings.warn( 1323s 1323s tests/tests.py::test_glpk_solver 1323s :891: DeprecationWarning: This process (pid=3271) is multi-threaded, use of fork() may lead to deadlocks in the child. 1323s 1323s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1323s === 252 passed, 46 skipped, 97 deselected, 21 warnings in 1097.61s (0:18:17) === 1325s ============================= test session starts ============================== 1325s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3 1325s cachedir: .pytest_cache 1325s rootdir: /tmp/autopkgtest.1XyFWU/autopkgtest_tmp 1325s plugins: typeguard-4.4.2, mock-3.15.1, requests_mock-1.12.1 1330s collecting ... collected 395 items / 388 deselected / 7 selected 1330s 1350s tests/tests.py::test_group_job_resources_with_pipe PASSED [ 14%] 1350s tests/tests.py::test_group_job_resources_with_pipe_with_too_much_constraint PASSED [ 28%] 1410s tests/tests.py::test_multicomp_group_jobs Timeout (0:01:00)! 1410s Thread 0xefcfd400 (most recent call first): 1410s File "/usr/lib/python3.13/selectors.py", line 452 in select 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1410s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1410s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1410s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1410s File "/usr/lib/python3.13/threading.py", line 994 in run 1410s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1410s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1410s 1410s Thread 0xf1749400 (most recent call first): 1410s File "/usr/lib/python3.13/selectors.py", line 452 in select 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1410s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1410s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1410s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1410s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1410s File "/usr/lib/python3.13/threading.py", line 994 in run 1410s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1410s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1410s 1410s Thread 0xf04fe400 (most recent call first): 1410s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1410s File "/usr/lib/python3.13/threading.py", line 994 in run 1410s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1410s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1410s 1410s Thread 0xf0dff400 (most recent call first): 1410s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1410s File "/usr/lib/python3.13/threading.py", line 994 in run 1410s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1410s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1410s 1410s Thread 0xf795c020 (most recent call first): 1410s File "/usr/lib/python3.13/threading.py", line 359 in wait 1410s File "/usr/lib/python3.13/threading.py", line 511 in acquire 1410s File "/usr/lib/python3/dist-packages/snakemake/scheduler.py", line 546 in schedule 1410s File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 1242 in execute 1410s File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 792 in snakemake 1410s File "/tmp/autopkgtest.1XyFWU/autopkgtest_tmp/tests/common.py", line 234 in run 1410s File "/tmp/autopkgtest.1XyFWU/autopkgtest_tmp/tests/tests.py", line 1196 in test_multicomp_group_jobs 1410s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 157 in pytest_pyfunc_call 1410s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1410s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1410s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1410s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1671 in runtest 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 178 in pytest_runtest_call 1410s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1410s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1410s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 246 in 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 344 in from_call 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 245 in call_and_report 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 136 in runtestprotocol 1410s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 117 in pytest_runtest_protocol 1410s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1410s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1410s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1410s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 367 in pytest_runtestloop 1410s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1410s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1410s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1410s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 343 in _main 1410s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 289 in wrap_session 1410s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 336 in pytest_cmdline_main 1410s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1410s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1410s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1410s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main 1410s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main 1410s File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in 1410s File "", line 88 in _run_code 1410s File "", line 198 in _run_module_as_main 1421s PASSED [ 42%] 1423s tests/tests.py::test_pipes PASSED [ 57%] 1424s tests/tests.py::test_pipes_multiple PASSED [ 71%] 1425s tests/tests.py::test_pipes_fail PASSED [ 85%] 1436s tests/tests.py::test_pipes2 PASSED [100%] 1436s 1436s =============================== warnings summary =============================== 1436s tests/tests.py::test_group_job_resources_with_pipe 1436s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1436s import pkg_resources 1436s 1436s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1436s =========== 7 passed, 388 deselected, 1 warning in 110.88s (0:01:50) =========== 1437s autopkgtest [17:57:08]: test run-unit-test: -----------------------] 1441s autopkgtest [17:57:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1441s run-unit-test PASS 1445s autopkgtest [17:57:16]: @@@@@@@@@@@@@@@@@@@@ summary 1445s command1 PASS 1445s run-unit-test PASS