0s autopkgtest [23:49:28]: starting date and time: 2026-02-09 23:49:28+0000 0s autopkgtest [23:49:28]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:49:28]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.phnzrlsd/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.56 lxd-armhf-10.145.243.56:autopkgtest/ubuntu/resolute/armhf 24s autopkgtest [23:49:52]: testbed dpkg architecture: armhf 26s autopkgtest [23:49:54]: testbed apt version: 3.1.15 30s autopkgtest [23:49:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [23:50:01]: testbed release detected to be: None 41s autopkgtest [23:50:09]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 44s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 44s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 45s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 46s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 54s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 54s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 55s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 60s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 132s Get:13 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 132s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 135s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 170s Fetched 43.5 MB in 2min 7s (342 kB/s) 171s Reading package lists... 178s autopkgtest [23:52:26]: upgrading testbed (apt dist-upgrade and autopurge) 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s Calculating upgrade... 181s The following packages will be upgraded: 181s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 181s libip6tc2 libxtables12 wget 182s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Need to get 2407 kB of archives. 182s After this operation, 152 kB of additional disk space will be used. 182s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 182s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 182s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 182s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 182s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 185s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 186s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 186s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 186s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 187s Preconfiguring packages ... 187s Fetched 2407 kB in 5s (477 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 187s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 187s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 187s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 187s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 188s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 188s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 188s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 188s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 188s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 188s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 188s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 188s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 188s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 188s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 188s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 188s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 188s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 188s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 188s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 188s Setting up wget (1.25.0-2ubuntu4) ... 188s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 188s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 188s Setting up dracut-install (109-11ubuntu1) ... 188s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 188s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 188s Setting up iptables (1.8.11-2ubuntu3) ... 188s Setting up iproute2 (6.18.0-1ubuntu1) ... 188s Processing triggers for man-db (2.13.1-1build1) ... 190s Processing triggers for install-info (7.2-5) ... 190s Processing triggers for libc-bin (2.42-2ubuntu4) ... 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Solving dependencies... 194s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s autopkgtest [23:52:45]: rebooting testbed after setup commands that affected boot 238s autopkgtest [23:53:26]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 263s autopkgtest [23:53:51]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform 274s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B] 274s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB] 274s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B] 274s gpgv: Signature made Wed Nov 1 07:12:04 2023 UTC 274s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 274s gpgv: issuer "tille@debian.org" 274s gpgv: Can't check signature: No public key 274s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found 274s autopkgtest [23:54:02]: testing package r-cran-sctransform version 0.4.1-1 277s autopkgtest [23:54:05]: build not needed 280s autopkgtest [23:54:08]: test run-unit-test: preparing testbed 282s Reading package lists... 282s Building dependency tree... 282s Reading state information... 283s Solving dependencies... 284s The following NEW packages will be installed: 284s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 284s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 284s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 284s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 284s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 284s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 284s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 284s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 284s libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core 284s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-crayon 284s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate 284s r-cran-fansi r-cran-farver r-cran-fs r-cran-future r-cran-future.apply 284s r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 284s r-cran-gtable r-cran-highr r-cran-irlba r-cran-isoband r-cran-jsonlite 284s r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-listenv 284s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 284s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 284s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 284s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 284s r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-s7 r-cran-scales 284s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 284s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 284s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 284s zip 284s 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. 284s Need to get 89.8 MB of archives. 284s After this operation, 207 MB of additional disk space will be used. 284s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 286s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 289s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 294s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 294s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 294s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.17.1-3ubuntu1 [180 kB] 295s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 296s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 304s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 304s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 305s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 305s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 305s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 305s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 306s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 306s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2build1 [38.8 kB] 306s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 306s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 307s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 307s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 308s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 308s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 308s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu3 [129 kB] 308s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 308s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 308s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 308s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 309s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 309s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 313s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 314s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 314s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 314s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.57.0-1 [218 kB] 315s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.57.0-1 [45.2 kB] 315s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.57.0-1 [25.3 kB] 315s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 315s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 315s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 315s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1build1 [15.3 kB] 315s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 317s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 317s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 317s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 317s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 317s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 317s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 319s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 319s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf node-normalize.css all 8.0.1-5.1 [10.4 kB] 319s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu3 [164 kB] 319s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 320s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 320s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 375s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-brio armhf 1.1.5-1 [37.9 kB] 375s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ps armhf 1.9.0-1 [403 kB] 376s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 376s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-processx armhf 3.8.6-1 [359 kB] 377s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-callr all 3.7.6-1 [458 kB] 378s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 381s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1build1 [91.1 kB] 381s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-crayon all 1.5.3-1 [165 kB] 381s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-desc all 1.4.3-1 [359 kB] 382s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-diffobj armhf 0.3.5-1build1 [1154 kB] 385s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-digest armhf 0.6.39-1 [211 kB] 385s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-generics all 0.1.4-1 [84.0 kB] 386s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 386s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 389s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 390s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 390s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 390s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 393s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 393s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 395s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 395s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 395s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 396s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tidyselect armhf 1.2.1+dfsg-1 [222 kB] 396s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dplyr armhf 1.1.4-4 [1533 kB] 399s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-evaluate all 1.0.5-1 [117 kB] 399s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 402s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fs armhf 1.6.5+dfsg-1 [242 kB] 402s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-globals all 0.19.0-1 [160 kB] 402s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 403s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-parallelly armhf 1.42.0-1 [540 kB] 404s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future all 1.34.0+dfsg-1 [646 kB] 405s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 405s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 406s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 408s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-s7 armhf 0.2.0-1 [328 kB] 409s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 409s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 409s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.3-1 [1088 kB] 411s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.4.0-1 [725 kB] 412s Get:93 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 422s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gridextra all 2.3-3build2 [1032 kB] 424s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xfun armhf 0.55+dfsg-1 [589 kB] 425s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-highr all 0.11+dfsg-1 [38.5 kB] 425s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 428s Get:98 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 436s Get:99 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-irlba armhf 2.3.5.1-4 [293 kB] 437s Get:100 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-jsonlite armhf 1.9.1+dfsg-1 [440 kB] 437s Get:101 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-yaml armhf 2.3.10-1 [101 kB] 438s Get:102 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 449s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-knitr all 1.51+dfsg-1 [847 kB] 451s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.22-1 [81.0 kB] 451s Get:105 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 453s Get:106 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrixstats armhf 1.5.0-1 [495 kB] 454s Get:107 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgbuild all 1.4.8-1 [219 kB] 454s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 454s Get:109 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rprojroot all 2.1.1-1 [131 kB] 454s Get:110 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgload all 1.4.1-1 [252 kB] 455s Get:111 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 459s Get:112 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-plyr armhf 1.8.9-1 [832 kB] 460s Get:113 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-praise all 1.0.0-4build2 [20.9 kB] 460s Get:114 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpparmadillo armhf 15.2.3-1-1 [915 kB] 462s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stringi armhf 1.8.4-1build2 [884 kB] 463s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stringr all 1.5.1-1 [290 kB] 464s Get:117 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-reshape2 armhf 1.4.4-2build2 [119 kB] 464s Get:118 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sctransform armhf 0.4.1-1 [496 kB] 465s Get:119 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-waldo all 0.6.2-1 [153 kB] 465s Get:120 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-testthat armhf 3.2.3-1 [1633 kB] 469s Preconfiguring packages ... 469s Fetched 89.8 MB in 3min 5s (486 kB/s) 469s Selecting previously unselected package libfreetype6:armhf. 470s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68686 files and directories currently installed.) 470s Preparing to unpack .../000-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 470s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 470s Selecting previously unselected package fonts-dejavu-mono. 470s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8build1_all.deb ... 470s Unpacking fonts-dejavu-mono (2.37-8build1) ... 470s Selecting previously unselected package fonts-dejavu-core. 470s Preparing to unpack .../002-fonts-dejavu-core_2.37-8build1_all.deb ... 470s Unpacking fonts-dejavu-core (2.37-8build1) ... 470s Selecting previously unselected package fontconfig-config. 470s Preparing to unpack .../003-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 470s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 470s Selecting previously unselected package libfontconfig1:armhf. 470s Preparing to unpack .../004-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 470s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 470s Selecting previously unselected package fontconfig. 470s Preparing to unpack .../005-fontconfig_2.17.1-3ubuntu1_armhf.deb ... 470s Unpacking fontconfig (2.17.1-3ubuntu1) ... 470s Selecting previously unselected package fonts-glyphicons-halflings. 470s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 470s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 470s Selecting previously unselected package fonts-mathjax. 471s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 471s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 471s Selecting previously unselected package libblas3:armhf. 471s Preparing to unpack .../008-libblas3_3.12.1-7ubuntu1_armhf.deb ... 471s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 471s Selecting previously unselected package libpixman-1-0:armhf. 471s Preparing to unpack .../009-libpixman-1-0_0.46.4-1_armhf.deb ... 471s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 471s Selecting previously unselected package libxcb-render0:armhf. 471s Preparing to unpack .../010-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 471s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 471s Selecting previously unselected package libxcb-shm0:armhf. 471s Preparing to unpack .../011-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 471s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 471s Selecting previously unselected package libxrender1:armhf. 471s Preparing to unpack .../012-libxrender1_1%3a0.9.12-1_armhf.deb ... 471s Unpacking libxrender1:armhf (1:0.9.12-1) ... 471s Selecting previously unselected package libcairo2:armhf. 471s Preparing to unpack .../013-libcairo2_1.18.4-3_armhf.deb ... 471s Unpacking libcairo2:armhf (1.18.4-3) ... 471s Selecting previously unselected package libdatrie1:armhf. 471s Preparing to unpack .../014-libdatrie1_0.2.14-1_armhf.deb ... 471s Unpacking libdatrie1:armhf (0.2.14-1) ... 471s Selecting previously unselected package libdeflate0:armhf. 471s Preparing to unpack .../015-libdeflate0_1.23-2build1_armhf.deb ... 471s Unpacking libdeflate0:armhf (1.23-2build1) ... 471s Selecting previously unselected package libgfortran5:armhf. 471s Preparing to unpack .../016-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 471s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 471s Selecting previously unselected package libgomp1:armhf. 471s Preparing to unpack .../017-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 471s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 471s Selecting previously unselected package libgraphite2-3:armhf. 471s Preparing to unpack .../018-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 471s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 471s Selecting previously unselected package libharfbuzz0b:armhf. 471s Preparing to unpack .../019-libharfbuzz0b_12.3.2-1_armhf.deb ... 471s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 471s Selecting previously unselected package x11-common. 471s Preparing to unpack .../020-x11-common_1%3a7.7+24ubuntu1_all.deb ... 471s Unpacking x11-common (1:7.7+24ubuntu1) ... 471s Selecting previously unselected package libice6:armhf. 471s Preparing to unpack .../021-libice6_2%3a1.1.1-1build1_armhf.deb ... 471s Unpacking libice6:armhf (2:1.1.1-1build1) ... 471s Selecting previously unselected package libjpeg-turbo8:armhf. 471s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu3_armhf.deb ... 471s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 471s Selecting previously unselected package libjpeg8:armhf. 471s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_armhf.deb ... 471s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 471s Selecting previously unselected package libjs-bootstrap. 471s Preparing to unpack .../024-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 471s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 472s Selecting previously unselected package libjs-highlight.js. 472s Preparing to unpack .../025-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 472s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 472s Selecting previously unselected package libjs-jquery. 472s Preparing to unpack .../026-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 472s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 472s Selecting previously unselected package libjs-jquery-datatables. 472s Preparing to unpack .../027-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 472s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 472s Selecting previously unselected package liblapack3:armhf. 472s Preparing to unpack .../028-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 472s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 472s Selecting previously unselected package liblerc4:armhf. 472s Preparing to unpack .../029-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 472s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 472s Selecting previously unselected package libthai-data. 472s Preparing to unpack .../030-libthai-data_0.1.30-1_all.deb ... 472s Unpacking libthai-data (0.1.30-1) ... 472s Selecting previously unselected package libthai0:armhf. 472s Preparing to unpack .../031-libthai0_0.1.30-1_armhf.deb ... 472s Unpacking libthai0:armhf (0.1.30-1) ... 472s Selecting previously unselected package libpango-1.0-0:armhf. 472s Preparing to unpack .../032-libpango-1.0-0_1.57.0-1_armhf.deb ... 472s Unpacking libpango-1.0-0:armhf (1.57.0-1) ... 472s Selecting previously unselected package libpangoft2-1.0-0:armhf. 472s Preparing to unpack .../033-libpangoft2-1.0-0_1.57.0-1_armhf.deb ... 472s Unpacking libpangoft2-1.0-0:armhf (1.57.0-1) ... 472s Selecting previously unselected package libpangocairo-1.0-0:armhf. 472s Preparing to unpack .../034-libpangocairo-1.0-0_1.57.0-1_armhf.deb ... 472s Unpacking libpangocairo-1.0-0:armhf (1.57.0-1) ... 472s Selecting previously unselected package libpaper2:armhf. 472s Preparing to unpack .../035-libpaper2_2.2.5-0.3build1_armhf.deb ... 472s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 472s Selecting previously unselected package libpaper-utils. 472s Preparing to unpack .../036-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 472s Unpacking libpaper-utils (2.2.5-0.3build1) ... 472s Selecting previously unselected package libsharpyuv0:armhf. 472s Preparing to unpack .../037-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 472s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 472s Selecting previously unselected package libsm6:armhf. 472s Preparing to unpack .../038-libsm6_2%3a1.2.6-1build1_armhf.deb ... 472s Unpacking libsm6:armhf (2:1.2.6-1build1) ... 472s Selecting previously unselected package libtcl8.6:armhf. 472s Preparing to unpack .../039-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 472s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 472s Selecting previously unselected package libjbig0:armhf. 472s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 472s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 473s Selecting previously unselected package libwebp7:armhf. 473s Preparing to unpack .../041-libwebp7_1.5.0-0.1build1_armhf.deb ... 473s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 473s Selecting previously unselected package libtiff6:armhf. 473s Preparing to unpack .../042-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 473s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 473s Selecting previously unselected package libxft2:armhf. 473s Preparing to unpack .../043-libxft2_2.3.6-1build2_armhf.deb ... 473s Unpacking libxft2:armhf (2.3.6-1build2) ... 473s Selecting previously unselected package libxss1:armhf. 473s Preparing to unpack .../044-libxss1_1%3a1.2.3-1build4_armhf.deb ... 473s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 473s Selecting previously unselected package libtk8.6:armhf. 473s Preparing to unpack .../045-libtk8.6_8.6.17-1_armhf.deb ... 473s Unpacking libtk8.6:armhf (8.6.17-1) ... 473s Selecting previously unselected package libxt6t64:armhf. 473s Preparing to unpack .../046-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 473s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 473s Selecting previously unselected package node-normalize.css. 473s Preparing to unpack .../047-node-normalize.css_8.0.1-5.1_all.deb ... 473s Unpacking node-normalize.css (8.0.1-5.1) ... 473s Selecting previously unselected package zip. 473s Preparing to unpack .../048-zip_3.0-15ubuntu3_armhf.deb ... 473s Unpacking zip (3.0-15ubuntu3) ... 473s Selecting previously unselected package unzip. 473s Preparing to unpack .../049-unzip_6.0-29ubuntu1_armhf.deb ... 473s Unpacking unzip (6.0-29ubuntu1) ... 473s Selecting previously unselected package xdg-utils. 473s Preparing to unpack .../050-xdg-utils_1.2.1-2ubuntu2_all.deb ... 473s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 473s Selecting previously unselected package r-base-core. 473s Preparing to unpack .../051-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 473s Unpacking r-base-core (4.5.2-1ubuntu2) ... 474s Selecting previously unselected package r-cran-brio. 474s Preparing to unpack .../052-r-cran-brio_1.1.5-1_armhf.deb ... 474s Unpacking r-cran-brio (1.1.5-1) ... 474s Selecting previously unselected package r-cran-ps. 474s Preparing to unpack .../053-r-cran-ps_1.9.0-1_armhf.deb ... 474s Unpacking r-cran-ps (1.9.0-1) ... 474s Selecting previously unselected package r-cran-r6. 474s Preparing to unpack .../054-r-cran-r6_2.6.1-1_all.deb ... 474s Unpacking r-cran-r6 (2.6.1-1) ... 474s Selecting previously unselected package r-cran-processx. 474s Preparing to unpack .../055-r-cran-processx_3.8.6-1_armhf.deb ... 474s Unpacking r-cran-processx (3.8.6-1) ... 474s Selecting previously unselected package r-cran-callr. 474s Preparing to unpack .../056-r-cran-callr_3.7.6-1_all.deb ... 474s Unpacking r-cran-callr (3.7.6-1) ... 474s Selecting previously unselected package r-cran-cli. 474s Preparing to unpack .../057-r-cran-cli_3.6.4-1_armhf.deb ... 474s Unpacking r-cran-cli (3.6.4-1) ... 474s Selecting previously unselected package r-cran-codetools. 474s Preparing to unpack .../058-r-cran-codetools_0.2-20-1build1_all.deb ... 474s Unpacking r-cran-codetools (0.2-20-1build1) ... 474s Selecting previously unselected package r-cran-crayon. 474s Preparing to unpack .../059-r-cran-crayon_1.5.3-1_all.deb ... 474s Unpacking r-cran-crayon (1.5.3-1) ... 474s Selecting previously unselected package r-cran-desc. 474s Preparing to unpack .../060-r-cran-desc_1.4.3-1_all.deb ... 474s Unpacking r-cran-desc (1.4.3-1) ... 474s Selecting previously unselected package r-cran-diffobj. 474s Preparing to unpack .../061-r-cran-diffobj_0.3.5-1build1_armhf.deb ... 474s Unpacking r-cran-diffobj (0.3.5-1build1) ... 474s Selecting previously unselected package r-cran-digest. 474s Preparing to unpack .../062-r-cran-digest_0.6.39-1_armhf.deb ... 474s Unpacking r-cran-digest (0.6.39-1) ... 474s Selecting previously unselected package r-cran-generics. 474s Preparing to unpack .../063-r-cran-generics_0.1.4-1_all.deb ... 474s Unpacking r-cran-generics (0.1.4-1) ... 474s Selecting previously unselected package r-cran-glue. 474s Preparing to unpack .../064-r-cran-glue_1.8.0-1_armhf.deb ... 474s Unpacking r-cran-glue (1.8.0-1) ... 474s Selecting previously unselected package r-cran-rlang. 475s Preparing to unpack .../065-r-cran-rlang_1.1.5-3_armhf.deb ... 475s Unpacking r-cran-rlang (1.1.5-3) ... 475s Selecting previously unselected package r-cran-lifecycle. 475s Preparing to unpack .../066-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 475s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 475s Selecting previously unselected package r-cran-magrittr. 475s Preparing to unpack .../067-r-cran-magrittr_2.0.3-1_armhf.deb ... 475s Unpacking r-cran-magrittr (2.0.3-1) ... 475s Selecting previously unselected package r-cran-utf8. 475s Preparing to unpack .../068-r-cran-utf8_1.2.4-1_armhf.deb ... 475s Unpacking r-cran-utf8 (1.2.4-1) ... 475s Selecting previously unselected package r-cran-vctrs. 475s Preparing to unpack .../069-r-cran-vctrs_0.6.5-1_armhf.deb ... 475s Unpacking r-cran-vctrs (0.6.5-1) ... 475s Selecting previously unselected package r-cran-pillar. 475s Preparing to unpack .../070-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 475s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-fansi. 475s Preparing to unpack .../071-r-cran-fansi_1.0.6-2_armhf.deb ... 475s Unpacking r-cran-fansi (1.0.6-2) ... 475s Selecting previously unselected package r-cran-pkgconfig. 475s Preparing to unpack .../072-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 475s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 475s Selecting previously unselected package r-cran-tibble. 475s Preparing to unpack .../073-r-cran-tibble_3.2.1+dfsg-3_armhf.deb ... 475s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 475s Selecting previously unselected package r-cran-withr. 475s Preparing to unpack .../074-r-cran-withr_3.0.2+dfsg-1_all.deb ... 475s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 475s Selecting previously unselected package r-cran-tidyselect. 475s Preparing to unpack .../075-r-cran-tidyselect_1.2.1+dfsg-1_armhf.deb ... 475s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-dplyr. 475s Preparing to unpack .../076-r-cran-dplyr_1.1.4-4_armhf.deb ... 475s Unpacking r-cran-dplyr (1.1.4-4) ... 475s Selecting previously unselected package r-cran-evaluate. 475s Preparing to unpack .../077-r-cran-evaluate_1.0.5-1_all.deb ... 475s Unpacking r-cran-evaluate (1.0.5-1) ... 475s Selecting previously unselected package r-cran-farver. 475s Preparing to unpack .../078-r-cran-farver_2.1.2-1_armhf.deb ... 475s Unpacking r-cran-farver (2.1.2-1) ... 476s Selecting previously unselected package r-cran-fs. 476s Preparing to unpack .../079-r-cran-fs_1.6.5+dfsg-1_armhf.deb ... 476s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 476s Selecting previously unselected package r-cran-globals. 476s Preparing to unpack .../080-r-cran-globals_0.19.0-1_all.deb ... 476s Unpacking r-cran-globals (0.19.0-1) ... 476s Selecting previously unselected package r-cran-listenv. 476s Preparing to unpack .../081-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 476s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 476s Selecting previously unselected package r-cran-parallelly. 476s Preparing to unpack .../082-r-cran-parallelly_1.42.0-1_armhf.deb ... 476s Unpacking r-cran-parallelly (1.42.0-1) ... 476s Selecting previously unselected package r-cran-future. 476s Preparing to unpack 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r-cran-pkgload (1.4.1-1) ... 484s Setting up r-cran-testthat (3.2.3-1) ... 484s Processing triggers for libc-bin (2.42-2ubuntu4) ... 484s Processing triggers for man-db (2.13.1-1build1) ... 485s Processing triggers for install-info (7.2-5) ... 495s autopkgtest [23:57:43]: test run-unit-test: [----------------------- 497s BEGIN TEST testthat.R 497s 497s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 497s Copyright (C) 2025 The R Foundation for Statistical Computing 497s Platform: arm-unknown-linux-gnueabihf (32-bit) 497s 497s R is free software and comes with ABSOLUTELY NO WARRANTY. 497s You are welcome to redistribute it under certain conditions. 497s Type 'license()' or 'licence()' for distribution details. 497s 497s R is a collaborative project with many contributors. 497s Type 'contributors()' for more information and 497s 'citation()' on how to cite R or R packages in publications. 497s 497s Type 'demo()' for some demos, 'help()' for on-line help, or 497s 'help.start()' for an HTML browser interface to help. 497s Type 'q()' to quit R. 497s 497s > library(testthat) 498s > library(sctransform) 501s > 501s > test_check("sctransform") 501s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 501s 501s ══ Skipped tests (10) ══════════════════════════════════════════════════════════ 501s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3', 501s 'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3', 501s 'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3', 501s 'test_vst.R:46:3' 501s 501s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 501s > 502s autopkgtest [23:57:50]: test run-unit-test: -----------------------] 506s autopkgtest [23:57:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 506s run-unit-test PASS 510s autopkgtest [23:57:58]: test pkg-r-autopkgtest: preparing testbed 512s Reading package lists... 512s Building dependency tree... 512s Reading state information... 513s Solving dependencies... 513s The following NEW packages will be installed: 513s build-essential cpp cpp-15 cpp-15-arm-linux-gnueabihf 513s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-15 g++-15-arm-linux-gnueabihf 513s g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf 513s gcc-arm-linux-gnueabihf gfortran gfortran-15 gfortran-15-arm-linux-gnueabihf 513s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 513s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-15-dev 513s libgfortran-15-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 513s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 513s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 513s libreadline-dev libstdc++-15-dev libtirpc-dev libubsan1 libzstd-dev 513s linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto 513s zlib1g-dev 514s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 514s Need to get 83.1 MB of archives. 514s After this operation, 253 MB of additional disk space will be used. 514s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-2ubuntu4 [21.8 kB] 514s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.19.0-3.3 [1804 kB] 517s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 518s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1build1 [62.6 kB] 518s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-2ubuntu4 [1416 kB] 520s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1build1 [553 kB] 521s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 521s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [10.1 MB] 548s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-12ubuntu1 [1032 B] 548s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 548s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 548s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-12ubuntu1 [43.5 kB] 548s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-12ubuntu1 [2949 kB] 554s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-12ubuntu1 [1187 kB] 556s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-12ubuntu1 [898 kB] 558s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [19.5 MB] 597s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-12ubuntu1 [499 kB] 598s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 598s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 598s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-12ubuntu1 [2638 kB] 604s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [11.4 MB] 626s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15 armhf 15.2.0-12ubuntu1 [25.3 kB] 626s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [968 B] 626s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf g++ armhf 4:15.2.0-4ubuntu1 [1086 B] 626s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf build-essential armhf 12.12ubuntu2 [5256 B] 626s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf dctrl-tools armhf 2.24-3build4 [95.0 kB] 626s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran-15-dev armhf 15.2.0-12ubuntu1 [380 kB] 627s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [10.7 MB] 650s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15 armhf 15.2.0-12ubuntu1 [18.1 kB] 650s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1020 B] 650s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran armhf 4:15.2.0-4ubuntu1 [1162 B] 650s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf icu-devtools armhf 78.2-1ubuntu1 [203 kB] 651s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libblas-dev armhf 3.12.1-7ubuntu1 [141 kB] 651s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libbz2-dev armhf 1.0.8-6build2 [31.2 kB] 651s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate-dev armhf 1.23-2build1 [45.1 kB] 652s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libicu-dev armhf 78.2-1ubuntu1 [12.2 MB] 682s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8-dev armhf 2.1.5-4ubuntu3 [265 kB] 682s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] 682s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] 682s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack-dev armhf 3.12.1-7ubuntu1 [2207 kB] 687s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libncurses-dev armhf 6.6+20251231-1 [348 kB] 688s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libpcre2-16-0 armhf 10.46-1 [206 kB] 689s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libpcre2-32-0 armhf 10.46-1 [197 kB] 689s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libpcre2-posix3 armhf 10.46-1 [6286 B] 689s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libpcre2-dev armhf 10.46-1 [744 kB] 691s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libpkgconf3 armhf 1.8.1-4build1 [26.6 kB] 692s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu2 [881 kB] 694s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libpng-dev armhf 1.6.54-1 [252 kB] 694s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libreadline-dev armhf 8.3-3 [165 kB] 695s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libzstd-dev armhf 1.5.7+dfsg-3 [342 kB] 696s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf liblzma-dev armhf 5.8.2-2 [167 kB] 696s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf pkgconf-bin armhf 1.8.1-4build1 [21.4 kB] 696s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf pkgconf armhf 1.8.1-4build1 [16.8 kB] 696s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libtirpc-dev armhf 1.3.6+ds-1 [184 kB] 697s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-dev all 4.5.2-1ubuntu2 [1880 B] 697s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf pkg-r-autopkgtest all 20250812 [6158 B] 698s Fetched 83.1 MB in 3min 3s (453 kB/s) 698s Selecting previously unselected package libc-dev-bin. 698s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84494 files and directories currently installed.) 698s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_armhf.deb ... 698s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 698s Selecting previously unselected package linux-libc-dev:armhf. 698s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_armhf.deb ... 698s Unpacking linux-libc-dev:armhf (6.19.0-3.3) ... 698s Selecting previously unselected package libcrypt-dev:armhf. 698s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_armhf.deb ... 698s Unpacking libcrypt-dev:armhf (1:4.5.1-1) ... 698s Selecting previously unselected package rpcsvc-proto. 698s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_armhf.deb ... 698s Unpacking rpcsvc-proto (1.4.3-1build1) ... 698s Selecting previously unselected package libc6-dev:armhf. 698s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_armhf.deb ... 698s Unpacking libc6-dev:armhf (2.42-2ubuntu4) ... 698s Selecting previously unselected package libisl23:armhf. 698s Preparing to unpack .../05-libisl23_0.27-1build1_armhf.deb ... 698s Unpacking libisl23:armhf (0.27-1build1) ... 698s Selecting previously unselected package libmpc3:armhf. 698s Preparing to unpack .../06-libmpc3_1.3.1-2_armhf.deb ... 698s Unpacking libmpc3:armhf (1.3.1-2) ... 698s Selecting previously unselected package cpp-15-arm-linux-gnueabihf. 698s Preparing to unpack .../07-cpp-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 698s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package cpp-15. 699s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package cpp-arm-linux-gnueabihf. 699s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 699s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 699s Selecting previously unselected package cpp. 699s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ... 699s Unpacking cpp (4:15.2.0-4ubuntu1) ... 699s Selecting previously unselected package libcc1-0:armhf. 699s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking libcc1-0:armhf (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package libasan8:armhf. 699s Preparing to unpack .../12-libasan8_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking libasan8:armhf (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package libubsan1:armhf. 699s Preparing to unpack .../13-libubsan1_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking libubsan1:armhf (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package libgcc-15-dev:armhf. 699s Preparing to unpack .../14-libgcc-15-dev_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 699s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 699s Preparing to unpack .../15-gcc-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 699s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 700s Selecting previously unselected package gcc-15. 700s Preparing to unpack .../16-gcc-15_15.2.0-12ubuntu1_armhf.deb ... 700s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 700s Selecting previously unselected package gcc-arm-linux-gnueabihf. 700s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 700s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 700s Selecting previously unselected package gcc. 700s Preparing to unpack .../18-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ... 700s Unpacking gcc (4:15.2.0-4ubuntu1) ... 700s Selecting previously unselected package libstdc++-15-dev:armhf. 700s Preparing to unpack .../19-libstdc++-15-dev_15.2.0-12ubuntu1_armhf.deb ... 700s Unpacking libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 700s Selecting previously unselected package g++-15-arm-linux-gnueabihf. 700s Preparing to unpack .../20-g++-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 700s Unpacking g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 700s Selecting previously unselected package g++-15. 700s Preparing to unpack .../21-g++-15_15.2.0-12ubuntu1_armhf.deb ... 700s Unpacking g++-15 (15.2.0-12ubuntu1) ... 701s Selecting previously unselected package g++-arm-linux-gnueabihf. 701s Preparing to unpack .../22-g++-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 701s Unpacking g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 701s Selecting previously unselected package g++. 701s Preparing to unpack .../23-g++_4%3a15.2.0-4ubuntu1_armhf.deb ... 701s Unpacking g++ (4:15.2.0-4ubuntu1) ... 701s Selecting previously unselected package build-essential. 701s Preparing to unpack .../24-build-essential_12.12ubuntu2_armhf.deb ... 701s Unpacking build-essential (12.12ubuntu2) ... 701s Selecting previously unselected package dctrl-tools. 701s Preparing to unpack .../25-dctrl-tools_2.24-3build4_armhf.deb ... 701s Unpacking dctrl-tools (2.24-3build4) ... 701s Selecting previously unselected package libgfortran-15-dev:armhf. 701s Preparing to unpack .../26-libgfortran-15-dev_15.2.0-12ubuntu1_armhf.deb ... 701s Unpacking libgfortran-15-dev:armhf (15.2.0-12ubuntu1) ... 701s Selecting previously unselected package gfortran-15-arm-linux-gnueabihf. 701s Preparing to unpack .../27-gfortran-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 701s Unpacking gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 701s Selecting previously unselected package gfortran-15. 701s Preparing to unpack .../28-gfortran-15_15.2.0-12ubuntu1_armhf.deb ... 701s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 701s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 701s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 701s Unpacking gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 701s Selecting previously unselected package gfortran. 701s Preparing to unpack .../30-gfortran_4%3a15.2.0-4ubuntu1_armhf.deb ... 701s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 701s Selecting previously unselected package icu-devtools. 701s Preparing to unpack .../31-icu-devtools_78.2-1ubuntu1_armhf.deb ... 701s Unpacking icu-devtools (78.2-1ubuntu1) ... 701s Selecting previously unselected package libblas-dev:armhf. 701s Preparing to unpack .../32-libblas-dev_3.12.1-7ubuntu1_armhf.deb ... 701s Unpacking libblas-dev:armhf (3.12.1-7ubuntu1) ... 701s Selecting previously unselected package libbz2-dev:armhf. 701s Preparing to unpack .../33-libbz2-dev_1.0.8-6build2_armhf.deb ... 701s Unpacking libbz2-dev:armhf (1.0.8-6build2) ... 701s Selecting previously unselected package libdeflate-dev:armhf. 701s Preparing to unpack .../34-libdeflate-dev_1.23-2build1_armhf.deb ... 701s Unpacking libdeflate-dev:armhf (1.23-2build1) ... 701s Selecting previously unselected package libicu-dev:armhf. 702s Preparing to unpack .../35-libicu-dev_78.2-1ubuntu1_armhf.deb ... 702s Unpacking libicu-dev:armhf (78.2-1ubuntu1) ... 702s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 702s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-4ubuntu3_armhf.deb ... 702s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 702s Selecting previously unselected package libjpeg8-dev:armhf. 702s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 702s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 702s Selecting previously unselected package libjpeg-dev:armhf. 702s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 702s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 702s Selecting previously unselected package liblapack-dev:armhf. 702s Preparing to unpack .../39-liblapack-dev_3.12.1-7ubuntu1_armhf.deb ... 702s Unpacking liblapack-dev:armhf (3.12.1-7ubuntu1) ... 702s Selecting previously unselected package libncurses-dev:armhf. 702s Preparing to unpack .../40-libncurses-dev_6.6+20251231-1_armhf.deb ... 702s Unpacking libncurses-dev:armhf (6.6+20251231-1) ... 702s Selecting previously unselected package libpcre2-16-0:armhf. 702s Preparing to unpack .../41-libpcre2-16-0_10.46-1_armhf.deb ... 702s Unpacking libpcre2-16-0:armhf (10.46-1) ... 702s Selecting previously unselected package libpcre2-32-0:armhf. 702s Preparing to unpack .../42-libpcre2-32-0_10.46-1_armhf.deb ... 702s Unpacking libpcre2-32-0:armhf (10.46-1) ... 702s Selecting previously unselected package libpcre2-posix3:armhf. 702s Preparing to unpack .../43-libpcre2-posix3_10.46-1_armhf.deb ... 702s Unpacking libpcre2-posix3:armhf (10.46-1) ... 702s Selecting previously unselected package libpcre2-dev:armhf. 703s Preparing to unpack .../44-libpcre2-dev_10.46-1_armhf.deb ... 703s Unpacking libpcre2-dev:armhf (10.46-1) ... 703s Selecting previously unselected package libpkgconf3:armhf. 703s Preparing to unpack .../45-libpkgconf3_1.8.1-4build1_armhf.deb ... 703s Unpacking libpkgconf3:armhf (1.8.1-4build1) ... 703s Selecting previously unselected package zlib1g-dev:armhf. 703s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 703s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 703s Selecting previously unselected package libpng-dev:armhf. 703s Preparing to unpack .../47-libpng-dev_1.6.54-1_armhf.deb ... 703s Unpacking libpng-dev:armhf (1.6.54-1) ... 703s Selecting previously unselected package libreadline-dev:armhf. 703s Preparing to unpack .../48-libreadline-dev_8.3-3_armhf.deb ... 703s Unpacking libreadline-dev:armhf (8.3-3) ... 703s Selecting previously unselected package libzstd-dev:armhf. 703s Preparing to unpack .../49-libzstd-dev_1.5.7+dfsg-3_armhf.deb ... 703s Unpacking libzstd-dev:armhf (1.5.7+dfsg-3) ... 703s Selecting previously unselected package liblzma-dev:armhf. 703s Preparing to unpack .../50-liblzma-dev_5.8.2-2_armhf.deb ... 703s Unpacking liblzma-dev:armhf (5.8.2-2) ... 703s Selecting previously unselected package pkgconf-bin. 703s Preparing to unpack .../51-pkgconf-bin_1.8.1-4build1_armhf.deb ... 703s Unpacking pkgconf-bin (1.8.1-4build1) ... 703s Selecting previously unselected package pkgconf:armhf. 703s Preparing to unpack .../52-pkgconf_1.8.1-4build1_armhf.deb ... 703s Unpacking pkgconf:armhf (1.8.1-4build1) ... 703s Selecting previously unselected package libtirpc-dev:armhf. 703s Preparing to unpack .../53-libtirpc-dev_1.3.6+ds-1_armhf.deb ... 703s Unpacking libtirpc-dev:armhf (1.3.6+ds-1) ... 703s Selecting previously unselected package r-base-dev. 703s Preparing to unpack .../54-r-base-dev_4.5.2-1ubuntu2_all.deb ... 703s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 703s Selecting previously unselected package pkg-r-autopkgtest. 703s Preparing to unpack .../55-pkg-r-autopkgtest_20250812_all.deb ... 703s Unpacking pkg-r-autopkgtest (20250812) ... 703s Setting up libzstd-dev:armhf (1.5.7+dfsg-3) ... 703s Setting up linux-libc-dev:armhf (6.19.0-3.3) ... 703s Setting up libpcre2-16-0:armhf (10.46-1) ... 703s Setting up libpcre2-32-0:armhf (10.46-1) ... 703s Setting up libtirpc-dev:armhf (1.3.6+ds-1) ... 703s Setting up libpkgconf3:armhf (1.8.1-4build1) ... 703s Setting up rpcsvc-proto (1.4.3-1build1) ... 703s Setting up libmpc3:armhf (1.3.1-2) ... 703s Setting up icu-devtools (78.2-1ubuntu1) ... 703s Setting up pkgconf-bin (1.8.1-4build1) ... 703s Setting up liblzma-dev:armhf (5.8.2-2) ... 703s Setting up libubsan1:armhf (15.2.0-12ubuntu1) ... 703s Setting up libpcre2-posix3:armhf (10.46-1) ... 703s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 703s Setting up libasan8:armhf (15.2.0-12ubuntu1) ... 703s Setting up libisl23:armhf (0.27-1build1) ... 703s Setting up libc-dev-bin (2.42-2ubuntu4) ... 703s Setting up libdeflate-dev:armhf (1.23-2build1) ... 703s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 703s Setting up libcc1-0:armhf (15.2.0-12ubuntu1) ... 703s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 703s Setting up libblas-dev:armhf (3.12.1-7ubuntu1) ... 703s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 703s Setting up dctrl-tools (2.24-3build4) ... 703s Setting up libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 703s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 703s Setting up libgfortran-15-dev:armhf (15.2.0-12ubuntu1) ... 703s Setting up pkgconf:armhf (1.8.1-4build1) ... 703s Setting up liblapack-dev:armhf (3.12.1-7ubuntu1) ... 703s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 703s Setting up cpp-15 (15.2.0-12ubuntu1) ... 703s Setting up cpp (4:15.2.0-4ubuntu1) ... 703s Setting up libc6-dev:armhf (2.42-2ubuntu4) ... 703s Setting up libicu-dev:armhf (78.2-1ubuntu1) ... 703s Setting up libbz2-dev:armhf (1.0.8-6build2) ... 703s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 703s Setting up libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 703s Setting up libncurses-dev:armhf (6.6+20251231-1) ... 703s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 703s Setting up libpcre2-dev:armhf (10.46-1) ... 703s Setting up libreadline-dev:armhf (8.3-3) ... 703s Setting up gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 703s Setting up gcc-15 (15.2.0-12ubuntu1) ... 703s Setting up libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 703s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 703s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 703s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 703s Setting up libpng-dev:armhf (1.6.54-1) ... 703s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 703s Setting up g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 703s Setting up gcc (4:15.2.0-4ubuntu1) ... 703s Setting up g++-15 (15.2.0-12ubuntu1) ... 703s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 703s Setting up gfortran (4:15.2.0-4ubuntu1) ... 703s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 703s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 703s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 703s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 703s Setting up g++ (4:15.2.0-4ubuntu1) ... 703s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 703s Setting up build-essential (12.12ubuntu2) ... 703s Setting up r-base-dev (4.5.2-1ubuntu2) ... 703s Setting up pkg-r-autopkgtest (20250812) ... 703s Processing triggers for libc-bin (2.42-2ubuntu4) ... 703s Processing triggers for man-db (2.13.1-1build1) ... 705s Processing triggers for install-info (7.2-5) ... 713s autopkgtest [00:01:21]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 713s autopkgtest [00:01:21]: test pkg-r-autopkgtest: [----------------------- 715s Test: Try to load the R library sctransform 715s 715s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 715s Copyright (C) 2025 The R Foundation for Statistical Computing 715s Platform: arm-unknown-linux-gnueabihf (32-bit) 715s 715s R is free software and comes with ABSOLUTELY NO WARRANTY. 715s You are welcome to redistribute it under certain conditions. 715s Type 'license()' or 'licence()' for distribution details. 715s 715s R is a collaborative project with many contributors. 715s Type 'contributors()' for more information and 715s 'citation()' on how to cite R or R packages in publications. 715s 715s Type 'demo()' for some demos, 'help()' for on-line help, or 715s 'help.start()' for an HTML browser interface to help. 715s Type 'q()' to quit R. 715s 715s > library('sctransform') 718s > 718s autopkgtest [00:01:26]: test pkg-r-autopkgtest: -----------------------] 722s autopkgtest [00:01:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 722s pkg-r-autopkgtest PASS 726s autopkgtest [00:01:34]: @@@@@@@@@@@@@@@@@@@@ summary 726s run-unit-test PASS 726s pkg-r-autopkgtest PASS