0s autopkgtest [23:44:29]: starting date and time: 2026-02-09 23:44:29+0000 0s autopkgtest [23:44:29]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:44:29]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eou9ncug/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.58 lxd-armhf-10.145.243.58:autopkgtest/ubuntu/resolute/armhf 27s autopkgtest [23:44:56]: testbed dpkg architecture: armhf 28s autopkgtest [23:44:57]: testbed apt version: 3.1.15 32s autopkgtest [23:45:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [23:45:03]: testbed release detected to be: None 44s autopkgtest [23:45:13]: updating testbed package index (apt update) 46s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 47s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 47s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 47s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 48s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 51s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 51s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 51s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 52s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 54s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 54s Get:11 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 101s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 104s Get:13 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 105s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 107s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 140s Fetched 43.5 MB in 1min 34s (462 kB/s) 141s Reading package lists... 147s autopkgtest [23:46:56]: upgrading testbed (apt dist-upgrade and autopurge) 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Calculating upgrade... 150s The following packages will be upgraded: 150s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 150s libip6tc2 libxtables12 wget 151s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 2407 kB of archives. 151s After this operation, 152 kB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 151s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 151s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 151s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 151s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 154s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 154s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 155s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 156s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 157s Preconfiguring packages ... 157s Fetched 2407 kB in 6s (411 kB/s) 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 157s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 157s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 157s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 157s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 157s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 157s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 157s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 157s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 157s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 157s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 158s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 158s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 158s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 158s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 158s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 158s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 158s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 158s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 158s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 158s Setting up wget (1.25.0-2ubuntu4) ... 158s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 158s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 158s Setting up dracut-install (109-11ubuntu1) ... 158s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 158s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 158s Setting up iptables (1.8.11-2ubuntu3) ... 158s Setting up iproute2 (6.18.0-1ubuntu1) ... 158s Processing triggers for man-db (2.13.1-1build1) ... 160s Processing triggers for install-info (7.2-5) ... 160s Processing triggers for libc-bin (2.42-2ubuntu4) ... 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Solving dependencies... 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s autopkgtest [23:47:16]: rebooting testbed after setup commands that affected boot 218s autopkgtest [23:48:07]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 247s autopkgtest [23:48:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 265s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 265s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 265s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 265s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 265s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 265s gpgv: issuer "tille@debian.org" 265s gpgv: Can't check signature: No public key 265s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 265s autopkgtest [23:48:54]: testing package r-cran-gstat version 2.1-3-2 269s autopkgtest [23:48:58]: build not needed 278s autopkgtest [23:49:07]: test run-unit-test: preparing testbed 281s Reading package lists... 282s Building dependency tree... 282s Reading state information... 282s Solving dependencies... 282s The following NEW packages will be installed: 282s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 282s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 282s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 282s libde265-0 libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 282s libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 282s libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 282s libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 282s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 libkmlbase1t64 282s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 282s libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 283s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 283s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 283s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 283s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 283s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 283s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 283s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 283s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 283s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-farver r-cran-fields 283s r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 r-cran-globals 283s r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals r-cran-isoband 283s r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lifecycle 283s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 283s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-r6 283s r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 283s r-cran-s7 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime 283s r-cran-spam r-cran-stars r-cran-terra r-cran-units r-cran-vctrs 283s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 283s unixodbc-common unzip x11-common xdg-utils zip 283s 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. 283s Need to get 158 MB of archives. 283s After this operation, 310 MB of additional disk space will be used. 283s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 285s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 287s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 291s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 292s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 294s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.17.1-3ubuntu1 [180 kB] 294s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-data all 3.12.1+dfsg-1 [278 kB] 296s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-plugins armhf 3.12.1+dfsg-1 [26.8 kB] 296s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libabsl20260107 armhf 20260107.0-1 [557 kB] 298s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.5-1 [20.8 kB] 298s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libaom3 armhf 3.13.1-2 [1258 kB] 305s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 306s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 307s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 325s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf libarpack2t64 armhf 3.9.1-6 [88.7 kB] 326s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf libsuperlu7 armhf 7.0.1+dfsg1-2 [157 kB] 327s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libarmadillo15 armhf 1:15.2.1+dfsg-2 [106 kB] 328s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf libdav1d7 armhf 1.5.3-1 [299 kB] 330s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf libgav1-2 armhf 0.20.0-2build1 [330 kB] 333s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu3 [129 kB] 335s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 335s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libyuv0 armhf 0.0.1922.20260106-1 [93.9 kB] 336s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf libavif16 armhf 1.3.0-1ubuntu3 [98.7 kB] 336s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libsnappy1v5 armhf 1.2.2-2 [28.6 kB] 336s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf libblosc1 armhf 1.21.5+ds-2 [23.7 kB] 336s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 337s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 337s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 337s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 337s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 339s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libcfitsio10t64 armhf 4.6.3-1 [505 kB] 340s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 340s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libde265-0 armhf 1.0.16-1build1 [159 kB] 340s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2build1 [38.8 kB] 340s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libfyba0t64 armhf 4.1.1-11build2 [110 kB] 340s Get:36 http://ftpmaster.internal/ubuntu resolute/universe armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1ubuntu2 [20.4 kB] 341s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf libfreexl1 armhf 2.0.0-1build3 [38.1 kB] 341s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos3.14.1 armhf 3.14.1-2 [993 kB] 343s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos-c1t64 armhf 3.14.1-2 [114 kB] 343s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf proj-data all 9.7.1-1 [7950 kB] 360s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 360s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 360s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 360s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 361s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 361s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf libproj25 armhf 9.7.1-1 [1365 kB] 364s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeotiff5 armhf 1.7.4-1build1 [53.0 kB] 364s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libgif7 armhf 5.2.2-1ubuntu3 [32.8 kB] 364s Get:49 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.5-1 [16.3 kB] 364s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf4-0 armhf 4.3.1-2 [254 kB] 365s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.6+repack-2 [1423 kB] 368s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-aomdec armhf 1.21.2-1 [13.0 kB] 368s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-libde265 armhf 1.21.2-1 [13.6 kB] 368s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libheif1 armhf 1.21.2-1 [597 kB] 370s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 370s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf libjxl0.11 armhf 0.11.1-6ubuntu1 [1108 kB] 375s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf liburiparser1 armhf 0.9.8+dfsg-2 [30.3 kB] 376s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlbase1t64 armhf 1.3.0-13 [42.4 kB] 376s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmldom1t64 armhf 1.3.0-13 [146 kB] 377s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlengine1t64 armhf 1.3.0-13 [70.6 kB] 377s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 378s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf libmuparser2v5 armhf 2.3.4-2 [139 kB] 378s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 378s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libmysqlclient24 armhf 8.4.8-0ubuntu1 [1266 kB] 386s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.6+repack-2 [58.9 kB] 386s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf libnetcdf22 armhf 1:4.9.3-1build1 [511 kB] 389s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-9 [40.4 kB] 389s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libodbc2 armhf 2.3.14-1 [147 kB] 390s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf unixodbc-common all 2.3.14-1 [8792 B] 390s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf libodbcinst2 armhf 2.3.14-1 [31.4 kB] 390s Get:71 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 391s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf libgpgmepp6t64 armhf 1.24.2-3ubuntu2 [115 kB] 391s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf libpoppler147 armhf 25.03.0-11.1 [1046 kB] 399s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf libpq5 armhf 18.1-2 [137 kB] 400s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 401s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf librttopo1 armhf 1.1.0-4build1 [161 kB] 402s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf libspatialite8t64 armhf 5.1.0-3ubuntu1 [2007 kB] 415s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3build2 [827 kB] 419s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf libgdal38 armhf 3.12.1+dfsg-1 [10.2 MB] 460s Get:80 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 460s Get:81 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 462s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 462s Get:83 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 462s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 463s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 463s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.57.0-1 [218 kB] 465s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.57.0-1 [45.2 kB] 465s Get:88 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.57.0-1 [25.3 kB] 465s Get:89 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 465s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 465s Get:91 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1build1 [15.3 kB] 465s Get:92 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 470s Get:93 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 470s Get:94 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 470s Get:95 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 473s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-data all 2.2.28-8 [19.3 kB] 473s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-0 armhf 2.2.28-8 [47.6 kB] 473s Get:98 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 474s Get:99 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu3 [164 kB] 475s Get:100 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 476s Get:101 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 476s Get:102 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 533s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-abind all 1.4-8-1build1 [67.0 kB] 533s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 536s Get:105 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-class armhf 7.3-23-1 [88.8 kB] 536s Get:106 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 536s Get:107 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-e1071 armhf 1.7-17-1 [570 kB] 537s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-kernsmooth armhf 2.23-26-1build1 [91.4 kB] 537s Get:109 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-classint armhf 0.4-11+dfsg-1 [108 kB] 537s Get:110 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 540s Get:111 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1build1 [91.1 kB] 540s Get:112 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dbi all 1.2.3-1build1 [855 kB] 541s Get:113 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-digest armhf 0.6.39-1 [211 kB] 542s Get:114 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dotcall64 armhf 1.2-1 [36.5 kB] 542s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 544s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.22-1 [81.0 kB] 544s Get:117 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 544s Get:118 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 548s Get:119 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spam armhf 2.11-1-1 [2730 kB] 555s Get:120 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.3-1 [1088 kB] 558s Get:121 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-maps armhf 3.4.2.1-1 [2348 kB] 565s Get:122 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fields armhf 16.3.1-1 [3760 kB] 572s Get:123 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fnn armhf 1.1.4.1-1 [119 kB] 572s Get:124 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-globals all 0.19.0-1 [160 kB] 572s Get:125 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 573s Get:126 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-parallelly armhf 1.42.0-1 [540 kB] 574s Get:127 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future all 1.34.0+dfsg-1 [646 kB] 575s Get:128 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 575s Get:129 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 575s Get:130 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 579s Get:131 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 579s Get:132 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 579s Get:133 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 589s Get:134 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-s7 armhf 0.2.0-1 [328 kB] 591s Get:135 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 592s Get:136 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 592s Get:137 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 593s Get:138 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.4.0-1 [725 kB] 598s Get:139 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 606s Get:140 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 607s Get:141 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 634s Get:142 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 639s Get:143 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sp armhf 1:2.2-0+dfsg-1 [1441 kB] 644s Get:144 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-zoo armhf 1.8-15-1 [1025 kB] 648s Get:145 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 649s Get:146 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-wk armhf 0.9.4-1 [1785 kB] 654s Get:147 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-s2 armhf 1.1.9-1build1 [1738 kB] 657s Get:148 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-units armhf 0.8-7+dfsg-2 [292 kB] 658s Get:149 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sf armhf 1.0-19+dfsg-2build2 [3265 kB] 664s Get:150 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sftime all 0.2-0-6 [168 kB] 664s Get:151 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xts armhf 0.14.1-1 [1181 kB] 666s Get:152 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-intervals armhf 0.15.5-1 [600 kB] 667s Get:153 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spacetime all 1.3-3-2 [2780 kB] 672s Get:154 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stars all 0.7-0-1 [4415 kB] 682s Get:155 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gstat armhf 2.1-3-2 [2321 kB] 687s Get:156 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mapdata armhf 2.3.1-1 [23.5 MB] 731s Get:157 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-terra armhf 1.8-70-1build2 [4176 kB] 739s Get:158 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-raster armhf 3.6-31-2 [3150 kB] 746s Preconfiguring packages ... 746s Fetched 158 MB in 7min 42s (342 kB/s) 746s Selecting previously unselected package libfreetype6:armhf. 746s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68686 files and directories currently installed.) 746s Preparing to unpack .../000-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 746s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 746s Selecting previously unselected package fonts-dejavu-mono. 746s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8build1_all.deb ... 746s Unpacking fonts-dejavu-mono (2.37-8build1) ... 746s Selecting previously unselected package fonts-dejavu-core. 746s Preparing to unpack .../002-fonts-dejavu-core_2.37-8build1_all.deb ... 746s Unpacking fonts-dejavu-core (2.37-8build1) ... 746s Selecting previously unselected package fontconfig-config. 747s Preparing to unpack .../003-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 747s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 747s Selecting previously unselected package libfontconfig1:armhf. 747s Preparing to unpack .../004-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 747s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 747s Selecting previously unselected package fontconfig. 747s Preparing to unpack .../005-fontconfig_2.17.1-3ubuntu1_armhf.deb ... 747s Unpacking fontconfig (2.17.1-3ubuntu1) ... 747s Selecting previously unselected package gdal-data. 747s Preparing to unpack .../006-gdal-data_3.12.1+dfsg-1_all.deb ... 747s Unpacking gdal-data (3.12.1+dfsg-1) ... 747s Selecting previously unselected package gdal-plugins:armhf. 747s Preparing to unpack .../007-gdal-plugins_3.12.1+dfsg-1_armhf.deb ... 747s Unpacking gdal-plugins:armhf (3.12.1+dfsg-1) ... 747s Selecting previously unselected package libabsl20260107:armhf. 747s Preparing to unpack .../008-libabsl20260107_20260107.0-1_armhf.deb ... 747s Unpacking libabsl20260107:armhf (20260107.0-1) ... 747s Selecting previously unselected package libaec0:armhf. 747s Preparing to unpack .../009-libaec0_1.1.5-1_armhf.deb ... 747s Unpacking libaec0:armhf (1.1.5-1) ... 747s Selecting previously unselected package libaom3:armhf. 747s Preparing to unpack .../010-libaom3_3.13.1-2_armhf.deb ... 747s Unpacking libaom3:armhf (3.13.1-2) ... 747s Selecting previously unselected package libblas3:armhf. 747s Preparing to unpack .../011-libblas3_3.12.1-7ubuntu1_armhf.deb ... 747s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 747s Selecting previously unselected package libgfortran5:armhf. 747s Preparing to unpack .../012-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 747s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 747s Selecting previously unselected package liblapack3:armhf. 747s Preparing to unpack .../013-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 747s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 748s Selecting previously unselected package libarpack2t64:armhf. 748s Preparing to unpack .../014-libarpack2t64_3.9.1-6_armhf.deb ... 748s Unpacking libarpack2t64:armhf (3.9.1-6) ... 748s Selecting previously unselected package libsuperlu7:armhf. 748s Preparing to unpack .../015-libsuperlu7_7.0.1+dfsg1-2_armhf.deb ... 748s Unpacking libsuperlu7:armhf (7.0.1+dfsg1-2) ... 748s Selecting previously unselected package libarmadillo15. 748s Preparing to unpack .../016-libarmadillo15_1%3a15.2.1+dfsg-2_armhf.deb ... 748s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 748s Selecting previously unselected package libdav1d7:armhf. 748s Preparing to unpack .../017-libdav1d7_1.5.3-1_armhf.deb ... 748s Unpacking libdav1d7:armhf (1.5.3-1) ... 748s Selecting previously unselected package libgav1-2:armhf. 748s Preparing to unpack .../018-libgav1-2_0.20.0-2build1_armhf.deb ... 748s Unpacking libgav1-2:armhf (0.20.0-2build1) ... 748s Selecting previously unselected package libjpeg-turbo8:armhf. 748s Preparing to unpack .../019-libjpeg-turbo8_2.1.5-4ubuntu3_armhf.deb ... 748s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 748s Selecting previously unselected package libjpeg8:armhf. 748s Preparing to unpack .../020-libjpeg8_8c-2ubuntu11_armhf.deb ... 748s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 748s Selecting previously unselected package libyuv0:armhf. 748s Preparing to unpack .../021-libyuv0_0.0.1922.20260106-1_armhf.deb ... 748s Unpacking libyuv0:armhf (0.0.1922.20260106-1) ... 748s Selecting previously unselected package libavif16:armhf. 748s Preparing to unpack .../022-libavif16_1.3.0-1ubuntu3_armhf.deb ... 748s Unpacking libavif16:armhf (1.3.0-1ubuntu3) ... 748s Selecting previously unselected package libsnappy1v5:armhf. 748s Preparing to unpack .../023-libsnappy1v5_1.2.2-2_armhf.deb ... 748s Unpacking libsnappy1v5:armhf (1.2.2-2) ... 748s Selecting previously unselected package libblosc1:armhf. 748s Preparing to unpack .../024-libblosc1_1.21.5+ds-2_armhf.deb ... 748s Unpacking libblosc1:armhf (1.21.5+ds-2) ... 748s Selecting previously unselected package libpixman-1-0:armhf. 748s Preparing to unpack .../025-libpixman-1-0_0.46.4-1_armhf.deb ... 748s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 748s Selecting previously unselected package libxcb-render0:armhf. 748s Preparing to unpack .../026-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 748s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 748s Selecting previously unselected package libxcb-shm0:armhf. 748s Preparing to unpack .../027-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 748s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 748s Selecting previously unselected package libxrender1:armhf. 748s Preparing to unpack .../028-libxrender1_1%3a0.9.12-1_armhf.deb ... 748s Unpacking libxrender1:armhf (1:0.9.12-1) ... 748s Selecting previously unselected package libcairo2:armhf. 748s Preparing to unpack .../029-libcairo2_1.18.4-3_armhf.deb ... 748s Unpacking libcairo2:armhf (1.18.4-3) ... 748s Selecting previously unselected package libcfitsio10t64:armhf. 748s Preparing to unpack .../030-libcfitsio10t64_4.6.3-1_armhf.deb ... 748s Unpacking libcfitsio10t64:armhf (4.6.3-1) ... 748s Selecting previously unselected package libdatrie1:armhf. 748s Preparing to unpack .../031-libdatrie1_0.2.14-1_armhf.deb ... 748s Unpacking libdatrie1:armhf (0.2.14-1) ... 748s Selecting previously unselected package libde265-0:armhf. 748s Preparing to unpack .../032-libde265-0_1.0.16-1build1_armhf.deb ... 748s Unpacking libde265-0:armhf (1.0.16-1build1) ... 748s Selecting previously unselected package libdeflate0:armhf. 749s Preparing to unpack .../033-libdeflate0_1.23-2build1_armhf.deb ... 749s Unpacking libdeflate0:armhf (1.23-2build1) ... 749s Selecting previously unselected package libfyba0t64:armhf. 749s Preparing to unpack .../034-libfyba0t64_4.1.1-11build2_armhf.deb ... 749s Unpacking libfyba0t64:armhf (4.1.1-11build2) ... 749s Selecting previously unselected package libminizip1t64:armhf. 749s Preparing to unpack .../035-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 749s Unpacking libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 749s Selecting previously unselected package libfreexl1:armhf. 749s Preparing to unpack .../036-libfreexl1_2.0.0-1build3_armhf.deb ... 749s Unpacking libfreexl1:armhf (2.0.0-1build3) ... 749s Selecting previously unselected package libgeos3.14.1:armhf. 749s Preparing to unpack .../037-libgeos3.14.1_3.14.1-2_armhf.deb ... 749s Unpacking libgeos3.14.1:armhf (3.14.1-2) ... 749s Selecting previously unselected package libgeos-c1t64:armhf. 749s Preparing to unpack .../038-libgeos-c1t64_3.14.1-2_armhf.deb ... 749s Unpacking libgeos-c1t64:armhf (3.14.1-2) ... 749s Selecting previously unselected package proj-data. 749s Preparing to unpack .../039-proj-data_9.7.1-1_all.deb ... 749s Unpacking proj-data (9.7.1-1) ... 749s Selecting previously unselected package libjbig0:armhf. 749s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 749s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 749s Selecting previously unselected package liblerc4:armhf. 749s Preparing to unpack .../041-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 749s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 749s Selecting previously unselected package libsharpyuv0:armhf. 749s Preparing to unpack .../042-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 749s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 749s Selecting previously unselected package libwebp7:armhf. 749s Preparing to unpack .../043-libwebp7_1.5.0-0.1build1_armhf.deb ... 749s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 749s Selecting previously unselected package libtiff6:armhf. 749s Preparing to unpack .../044-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 749s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 749s Selecting previously unselected package libproj25:armhf. 749s Preparing to unpack .../045-libproj25_9.7.1-1_armhf.deb ... 749s Unpacking libproj25:armhf (9.7.1-1) ... 749s Selecting previously unselected package libgeotiff5:armhf. 749s Preparing to unpack .../046-libgeotiff5_1.7.4-1build1_armhf.deb ... 749s Unpacking libgeotiff5:armhf (1.7.4-1build1) ... 749s Selecting previously unselected package libgif7:armhf. 749s Preparing to unpack .../047-libgif7_5.2.2-1ubuntu3_armhf.deb ... 749s Unpacking libgif7:armhf (5.2.2-1ubuntu3) ... 749s Selecting previously unselected package libsz2:armhf. 749s Preparing to unpack .../048-libsz2_1.1.5-1_armhf.deb ... 749s Unpacking libsz2:armhf (1.1.5-1) ... 749s Selecting previously unselected package libhdf4-0:armhf. 749s Preparing to unpack .../049-libhdf4-0_4.3.1-2_armhf.deb ... 749s Unpacking libhdf4-0:armhf (4.3.1-2) ... 750s Selecting previously unselected package libhdf5-310:armhf. 750s Preparing to unpack .../050-libhdf5-310_1.14.6+repack-2_armhf.deb ... 750s Unpacking libhdf5-310:armhf (1.14.6+repack-2) ... 750s Selecting previously unselected package libheif-plugin-aomdec:armhf. 750s Preparing to unpack .../051-libheif-plugin-aomdec_1.21.2-1_armhf.deb ... 750s Unpacking libheif-plugin-aomdec:armhf (1.21.2-1) ... 750s Selecting previously unselected package libheif-plugin-libde265:armhf. 750s Preparing to unpack .../052-libheif-plugin-libde265_1.21.2-1_armhf.deb ... 750s Unpacking libheif-plugin-libde265:armhf (1.21.2-1) ... 750s Selecting previously unselected package libheif1:armhf. 750s Preparing to unpack .../053-libheif1_1.21.2-1_armhf.deb ... 750s Unpacking libheif1:armhf (1.21.2-1) ... 750s Selecting previously unselected package liblcms2-2:armhf. 750s Preparing to unpack .../054-liblcms2-2_2.17-1_armhf.deb ... 750s Unpacking liblcms2-2:armhf (2.17-1) ... 750s Selecting previously unselected package libjxl0.11:armhf. 750s Preparing to unpack .../055-libjxl0.11_0.11.1-6ubuntu1_armhf.deb ... 750s Unpacking libjxl0.11:armhf (0.11.1-6ubuntu1) ... 750s Selecting previously unselected package liburiparser1:armhf. 750s Preparing to unpack .../056-liburiparser1_0.9.8+dfsg-2_armhf.deb ... 750s Unpacking liburiparser1:armhf (0.9.8+dfsg-2) ... 750s Selecting previously unselected package libkmlbase1t64:armhf. 750s Preparing to unpack .../057-libkmlbase1t64_1.3.0-13_armhf.deb ... 750s Unpacking libkmlbase1t64:armhf (1.3.0-13) ... 750s Selecting previously unselected package libkmldom1t64:armhf. 750s Preparing to unpack .../058-libkmldom1t64_1.3.0-13_armhf.deb ... 750s Unpacking libkmldom1t64:armhf (1.3.0-13) ... 750s Selecting previously unselected package libkmlengine1t64:armhf. 750s Preparing to unpack .../059-libkmlengine1t64_1.3.0-13_armhf.deb ... 750s Unpacking libkmlengine1t64:armhf (1.3.0-13) ... 750s Selecting previously unselected package libgomp1:armhf. 750s Preparing to unpack .../060-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 750s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 750s Selecting previously unselected package libmuparser2v5:armhf. 750s Preparing to unpack .../061-libmuparser2v5_2.3.4-2_armhf.deb ... 750s Unpacking libmuparser2v5:armhf (2.3.4-2) ... 750s Selecting previously unselected package mysql-common. 750s Preparing to unpack .../062-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 750s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 750s Selecting previously unselected package libmysqlclient24:armhf. 750s Preparing to unpack .../063-libmysqlclient24_8.4.8-0ubuntu1_armhf.deb ... 750s Unpacking libmysqlclient24:armhf (8.4.8-0ubuntu1) ... 750s Selecting previously unselected package libhdf5-hl-310:armhf. 750s Preparing to unpack .../064-libhdf5-hl-310_1.14.6+repack-2_armhf.deb ... 750s Unpacking libhdf5-hl-310:armhf (1.14.6+repack-2) ... 750s Selecting previously unselected package libnetcdf22:armhf. 750s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_armhf.deb ... 750s Unpacking libnetcdf22:armhf (1:4.9.3-1build1) ... 750s Selecting previously unselected package libltdl7:armhf. 750s Preparing to unpack .../066-libltdl7_2.5.4-9_armhf.deb ... 750s Unpacking libltdl7:armhf (2.5.4-9) ... 750s Selecting previously unselected package libodbc2:armhf. 750s Preparing to unpack .../067-libodbc2_2.3.14-1_armhf.deb ... 750s Unpacking libodbc2:armhf (2.3.14-1) ... 750s Selecting previously unselected package unixodbc-common. 750s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 750s Unpacking unixodbc-common (2.3.14-1) ... 751s Selecting previously unselected package libodbcinst2:armhf. 751s Preparing to unpack .../069-libodbcinst2_2.3.14-1_armhf.deb ... 751s Unpacking libodbcinst2:armhf (2.3.14-1) ... 751s Selecting previously unselected package libopenjp2-7:armhf. 751s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_armhf.deb ... 751s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 751s Selecting previously unselected package libgpgmepp6t64:armhf. 751s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_armhf.deb ... 751s Unpacking libgpgmepp6t64:armhf (1.24.2-3ubuntu2) ... 751s Selecting previously unselected package libpoppler147:armhf. 751s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_armhf.deb ... 751s Unpacking libpoppler147:armhf (25.03.0-11.1) ... 751s Selecting previously unselected package libpq5:armhf. 751s Preparing to unpack .../073-libpq5_18.1-2_armhf.deb ... 751s Unpacking libpq5:armhf (18.1-2) ... 751s Selecting previously unselected package libqhull-r8.0:armhf. 751s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_armhf.deb ... 751s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 751s Selecting previously unselected package librttopo1:armhf. 751s Preparing to unpack .../075-librttopo1_1.1.0-4build1_armhf.deb ... 751s Unpacking librttopo1:armhf (1.1.0-4build1) ... 751s Selecting previously unselected package libspatialite8t64:armhf. 751s Preparing to unpack .../076-libspatialite8t64_5.1.0-3ubuntu1_armhf.deb ... 751s Unpacking libspatialite8t64:armhf (5.1.0-3ubuntu1) ... 751s Selecting previously unselected package libxerces-c3.2t64:armhf. 751s Preparing to unpack .../077-libxerces-c3.2t64_3.2.4+debian-1.3build2_armhf.deb ... 751s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3build2) ... 751s Selecting previously unselected package libgdal38:armhf. 751s Preparing to unpack .../078-libgdal38_3.12.1+dfsg-1_armhf.deb ... 751s Unpacking libgdal38:armhf (3.12.1+dfsg-1) ... 751s Selecting previously unselected package libgraphite2-3:armhf. 751s Preparing to unpack .../079-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 751s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 751s Selecting previously unselected package libharfbuzz0b:armhf. 751s Preparing to unpack .../080-libharfbuzz0b_12.3.2-1_armhf.deb ... 751s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 752s Selecting previously unselected package x11-common. 752s Preparing to unpack .../081-x11-common_1%3a7.7+24ubuntu1_all.deb ... 752s Unpacking x11-common (1:7.7+24ubuntu1) ... 752s Selecting previously unselected package libice6:armhf. 752s Preparing to unpack .../082-libice6_2%3a1.1.1-1build1_armhf.deb ... 752s Unpacking libice6:armhf (2:1.1.1-1build1) ... 752s Selecting previously unselected package libthai-data. 752s Preparing to unpack .../083-libthai-data_0.1.30-1_all.deb ... 752s Unpacking libthai-data (0.1.30-1) ... 752s Selecting previously unselected package libthai0:armhf. 752s Preparing to unpack .../084-libthai0_0.1.30-1_armhf.deb ... 752s Unpacking libthai0:armhf (0.1.30-1) ... 752s Selecting previously unselected package libpango-1.0-0:armhf. 752s Preparing to unpack .../085-libpango-1.0-0_1.57.0-1_armhf.deb ... 752s Unpacking libpango-1.0-0:armhf (1.57.0-1) ... 752s Selecting previously unselected package libpangoft2-1.0-0:armhf. 752s Preparing to unpack .../086-libpangoft2-1.0-0_1.57.0-1_armhf.deb ... 752s Unpacking libpangoft2-1.0-0:armhf (1.57.0-1) ... 752s Selecting previously unselected package libpangocairo-1.0-0:armhf. 752s Preparing to unpack .../087-libpangocairo-1.0-0_1.57.0-1_armhf.deb ... 752s Unpacking libpangocairo-1.0-0:armhf (1.57.0-1) ... 752s Selecting previously unselected package libpaper2:armhf. 752s Preparing to unpack .../088-libpaper2_2.2.5-0.3build1_armhf.deb ... 752s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 752s Selecting previously unselected package libpaper-utils. 752s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 752s Unpacking libpaper-utils (2.2.5-0.3build1) ... 752s Selecting previously unselected package libsm6:armhf. 752s Preparing to unpack .../090-libsm6_2%3a1.2.6-1build1_armhf.deb ... 752s Unpacking libsm6:armhf (2:1.2.6-1build1) ... 752s Selecting previously unselected package libtcl8.6:armhf. 752s Preparing to unpack .../091-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 752s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 752s Selecting previously unselected package libxft2:armhf. 752s Preparing to unpack .../092-libxft2_2.3.6-1build2_armhf.deb ... 752s Unpacking libxft2:armhf (2.3.6-1build2) ... 752s Selecting previously unselected package libxss1:armhf. 752s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_armhf.deb ... 752s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 752s Selecting previously unselected package libtk8.6:armhf. 752s Preparing to unpack .../094-libtk8.6_8.6.17-1_armhf.deb ... 752s Unpacking libtk8.6:armhf (8.6.17-1) ... 752s Selecting previously unselected package libudunits2-data. 752s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 752s Unpacking libudunits2-data (2.2.28-8) ... 752s Selecting previously unselected package libudunits2-0:armhf. 752s Preparing to unpack .../096-libudunits2-0_2.2.28-8_armhf.deb ... 752s Unpacking libudunits2-0:armhf (2.2.28-8) ... 752s Selecting previously unselected package libxt6t64:armhf. 752s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 752s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 752s Selecting previously unselected package zip. 752s Preparing to unpack .../098-zip_3.0-15ubuntu3_armhf.deb ... 752s Unpacking zip (3.0-15ubuntu3) ... 752s Selecting previously unselected package unzip. 752s Preparing to unpack .../099-unzip_6.0-29ubuntu1_armhf.deb ... 752s Unpacking unzip (6.0-29ubuntu1) ... 752s Selecting previously unselected package xdg-utils. 752s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu2_all.deb ... 752s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 752s Selecting previously unselected package r-base-core. 753s Preparing to unpack .../101-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 753s Unpacking r-base-core (4.5.2-1ubuntu2) ... 753s Selecting previously unselected package r-cran-abind. 753s Preparing to unpack .../102-r-cran-abind_1.4-8-1build1_all.deb ... 753s Unpacking r-cran-abind (1.4-8-1build1) ... 753s Selecting previously unselected package r-cran-mass. 753s Preparing to unpack .../103-r-cran-mass_7.3-65-1_armhf.deb ... 753s Unpacking r-cran-mass (7.3-65-1) ... 753s Selecting previously unselected package r-cran-class. 753s Preparing to unpack .../104-r-cran-class_7.3-23-1_armhf.deb ... 753s Unpacking r-cran-class (7.3-23-1) ... 753s Selecting previously unselected package r-cran-proxy. 753s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_armhf.deb ... 753s Unpacking r-cran-proxy (0.4-27-1) ... 753s Selecting previously unselected package r-cran-e1071. 753s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_armhf.deb ... 753s Unpacking r-cran-e1071 (1.7-17-1) ... 753s Selecting previously unselected package r-cran-kernsmooth. 753s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_armhf.deb ... 753s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 753s Selecting previously unselected package r-cran-classint. 753s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_armhf.deb ... 753s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 753s Selecting previously unselected package r-cran-cli. 753s Preparing to unpack .../109-r-cran-cli_3.6.4-1_armhf.deb ... 753s Unpacking r-cran-cli (3.6.4-1) ... 753s Selecting previously unselected package r-cran-codetools. 753s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 753s Unpacking r-cran-codetools (0.2-20-1build1) ... 754s Selecting previously unselected package r-cran-dbi. 754s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 754s Unpacking r-cran-dbi (1.2.3-1build1) ... 754s Selecting previously unselected package r-cran-digest. 754s Preparing to unpack .../112-r-cran-digest_0.6.39-1_armhf.deb ... 754s Unpacking r-cran-digest (0.6.39-1) ... 754s Selecting previously unselected package r-cran-dotcall64. 754s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_armhf.deb ... 754s Unpacking r-cran-dotcall64 (1.2-1) ... 754s Selecting previously unselected package r-cran-farver. 754s Preparing to unpack .../114-r-cran-farver_2.1.2-1_armhf.deb ... 754s Unpacking r-cran-farver (2.1.2-1) ... 754s Selecting previously unselected package r-cran-littler. 754s Preparing to unpack .../115-r-cran-littler_0.3.22-1_armhf.deb ... 754s Unpacking r-cran-littler (0.3.22-1) ... 754s Selecting previously unselected package r-cran-pkgkitten. 754s Preparing to unpack .../116-r-cran-pkgkitten_0.2.4-1_all.deb ... 754s Unpacking r-cran-pkgkitten (0.2.4-1) ... 754s Selecting previously unselected package r-cran-rcpp. 754s Preparing to unpack .../117-r-cran-rcpp_1.1.0-1_armhf.deb ... 754s Unpacking r-cran-rcpp (1.1.0-1) ... 754s Selecting previously unselected package r-cran-spam. 754s Preparing to unpack .../118-r-cran-spam_2.11-1-1_armhf.deb ... 754s Unpacking r-cran-spam (2.11-1-1) ... 754s Selecting previously unselected package r-cran-viridislite. 754s Preparing to unpack .../119-r-cran-viridislite_0.4.3-1_all.deb ... 754s Unpacking r-cran-viridislite (0.4.3-1) ... 754s Selecting previously unselected package r-cran-maps. 754s Preparing to unpack .../120-r-cran-maps_3.4.2.1-1_armhf.deb ... 754s Unpacking r-cran-maps (3.4.2.1-1) ... 754s Selecting previously unselected package r-cran-fields. 754s Preparing to unpack .../121-r-cran-fields_16.3.1-1_armhf.deb ... 754s Unpacking r-cran-fields (16.3.1-1) ... 754s Selecting previously unselected package r-cran-fnn. 754s Preparing to unpack .../122-r-cran-fnn_1.1.4.1-1_armhf.deb ... 754s Unpacking r-cran-fnn (1.1.4.1-1) ... 754s Selecting previously unselected package r-cran-globals. 754s Preparing to unpack .../123-r-cran-globals_0.19.0-1_all.deb ... 754s Unpacking r-cran-globals (0.19.0-1) ... 755s Selecting previously unselected package r-cran-listenv. 755s Preparing to unpack .../124-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 755s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 755s Selecting previously unselected package r-cran-parallelly. 755s Preparing to unpack .../125-r-cran-parallelly_1.42.0-1_armhf.deb ... 755s Unpacking r-cran-parallelly (1.42.0-1) ... 755s Selecting previously unselected package r-cran-future. 755s Preparing to unpack .../126-r-cran-future_1.34.0+dfsg-1_all.deb ... 755s Unpacking r-cran-future (1.34.0+dfsg-1) ... 755s Selecting previously unselected package r-cran-future.apply. 755s Preparing to unpack .../127-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 755s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 755s Selecting previously unselected package r-cran-glue. 755s Preparing to unpack .../128-r-cran-glue_1.8.0-1_armhf.deb ... 755s Unpacking r-cran-glue (1.8.0-1) ... 755s Selecting previously unselected package r-cran-rlang. 755s Preparing to unpack .../129-r-cran-rlang_1.1.5-3_armhf.deb ... 755s Unpacking r-cran-rlang (1.1.5-3) ... 755s Selecting previously unselected package r-cran-lifecycle. 755s Preparing to unpack .../130-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 755s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 755s Selecting previously unselected package r-cran-gtable. 755s Preparing to unpack .../131-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 755s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 755s Selecting previously unselected package r-cran-isoband. 755s Preparing to unpack .../132-r-cran-isoband_0.2.7-1_armhf.deb ... 755s Unpacking r-cran-isoband (0.2.7-1) ... 755s Selecting previously unselected package r-cran-s7. 755s Preparing to unpack .../133-r-cran-s7_0.2.0-1_armhf.deb ... 755s Unpacking r-cran-s7 (0.2.0-1) ... 755s Selecting previously unselected package r-cran-labeling. 755s Preparing to unpack .../134-r-cran-labeling_0.4.3-1_all.deb ... 755s Unpacking r-cran-labeling (0.4.3-1) ... 755s Selecting previously unselected package r-cran-r6. 755s Preparing to unpack .../135-r-cran-r6_2.6.1-1_all.deb ... 755s Unpacking r-cran-r6 (2.6.1-1) ... 755s Selecting previously unselected package r-cran-rcolorbrewer. 755s Preparing to unpack .../136-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 755s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 755s Selecting previously unselected package r-cran-scales. 755s Preparing to unpack .../137-r-cran-scales_1.4.0-1_all.deb ... 755s Unpacking r-cran-scales (1.4.0-1) ... 755s Selecting previously unselected package r-cran-vctrs. 755s Preparing to unpack .../138-r-cran-vctrs_0.6.5-1_armhf.deb ... 755s Unpacking r-cran-vctrs (0.6.5-1) ... 755s Selecting previously unselected package r-cran-withr. 755s Preparing to unpack .../139-r-cran-withr_3.0.2+dfsg-1_all.deb ... 755s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 755s Selecting previously unselected package r-cran-ggplot2. 755s Preparing to unpack .../140-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 755s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 756s Selecting previously unselected package r-cran-lattice. 756s Preparing to unpack .../141-r-cran-lattice_0.22-7-1_armhf.deb ... 756s Unpacking r-cran-lattice (0.22-7-1) ... 756s Selecting previously unselected package r-cran-sp. 756s Preparing to unpack .../142-r-cran-sp_1%3a2.2-0+dfsg-1_armhf.deb ... 756s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 756s Selecting previously unselected package r-cran-zoo. 756s Preparing to unpack .../143-r-cran-zoo_1.8-15-1_armhf.deb ... 756s Unpacking r-cran-zoo (1.8-15-1) ... 756s Selecting previously unselected package r-cran-magrittr. 756s Preparing to unpack .../144-r-cran-magrittr_2.0.3-1_armhf.deb ... 756s Unpacking r-cran-magrittr (2.0.3-1) ... 756s Selecting previously unselected package r-cran-wk. 756s Preparing to unpack .../145-r-cran-wk_0.9.4-1_armhf.deb ... 756s Unpacking r-cran-wk (0.9.4-1) ... 756s Selecting previously unselected package r-cran-s2. 756s Preparing to unpack .../146-r-cran-s2_1.1.9-1build1_armhf.deb ... 756s Unpacking r-cran-s2 (1.1.9-1build1) ... 756s Selecting previously unselected package r-cran-units. 756s Preparing to unpack .../147-r-cran-units_0.8-7+dfsg-2_armhf.deb ... 756s Unpacking r-cran-units (0.8-7+dfsg-2) ... 756s Selecting previously unselected package r-cran-sf. 756s Preparing to unpack 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Setting up r-cran-scales (1.4.0-1) ... 761s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 761s Setting up r-cran-zoo (1.8-15-1) ... 761s Setting up r-cran-units (0.8-7+dfsg-2) ... 761s Setting up r-cran-kernsmooth (2.23-26-1build1) ... 761s Setting up r-cran-globals (0.19.0-1) ... 761s Setting up r-cran-spam (2.11-1-1) ... 761s Setting up r-cran-vctrs (0.6.5-1) ... 761s Setting up r-cran-fields (16.3.1-1) ... 761s Setting up r-cran-class (7.3-23-1) ... 761s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... 761s Setting up r-cran-xts (0.14.1-1) ... 761s Setting up r-cran-future (1.34.0+dfsg-1) ... 761s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 761s Setting up r-cran-e1071 (1.7-17-1) ... 761s Setting up r-cran-spacetime (1.3-3-2) ... 761s Setting up r-cran-classint (0.4-11+dfsg-1) ... 761s Setting up libheif-plugin-aomdec:armhf (1.21.2-1) ... 761s Setting up libheif-plugin-libde265:armhf (1.21.2-1) ... 761s Setting up libheif1:armhf (1.21.2-1) ... 761s Setting up libgdal38:armhf (3.12.1+dfsg-1) ... 761s Setting up r-cran-terra (1.8-70-1build2) ... 761s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 761s Setting up r-cran-stars (0.7-0-1) ... 761s Setting up r-cran-sftime (0.2-0-6) ... 761s Setting up r-cran-gstat (2.1-3-2) ... 761s Setting up r-cran-raster (3.6-31-2) ... 761s Processing triggers for install-info (7.2-5) ... 761s Processing triggers for libc-bin (2.42-2ubuntu4) ... 762s Processing triggers for man-db (2.13.1-1build1) ... 772s autopkgtest [23:57:21]: test run-unit-test: [----------------------- 774s BEGIN TEST allier.R 774s 774s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 774s Copyright (C) 2025 The R Foundation for Statistical Computing 774s Platform: arm-unknown-linux-gnueabihf (32-bit) 774s 774s R is free software and comes with ABSOLUTELY NO WARRANTY. 774s You are welcome to redistribute it under certain conditions. 774s Type 'license()' or 'licence()' for distribution details. 774s 774s R is a collaborative project with many contributors. 774s Type 'contributors()' for more information and 774s 'citation()' on how to cite R or R packages in publications. 774s 774s Type 'demo()' for some demos, 'help()' for on-line help, or 774s 'help.start()' for an HTML browser interface to help. 774s Type 'q()' to quit R. 774s 774s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 774s > library(sp) 774s > library(gstat) 775s > 775s > # some data 775s > x <- c(215, 330, 410, 470, 545) 775s > y <- c(230, 310, 330, 340, 365) 775s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 775s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 775s > Allier <- data.frame(x, y, fc, por) 775s > coordinates(Allier) = ~x+y 775s > 775s > # gstat object for co-kriging using linear model of co-regionalization 775s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 775s + model=vgm(0.00247, "Sph", 480, 0.00166)) 775s > g <- gstat(g, id="por", formula=por~1, data=Allier, 775s + model=vgm(0.00239, "Sph", 480, 0.00118)) 775s > g <- gstat(g, id=c("fc", "por"), 775s + model=vgm(0.00151, "Sph", 480, -0.00124)) 775s > 775s > # predict at single point 775s > g$set = list(choleski = 0) # LDL' 775s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 775s Linear Model of Coregionalization found. Good. 775s [using ordinary cokriging] 775s we're at location X: 450 Y: 350 Z: 0 775s zero block size 775s we're at point X: 450 Y: 350 Z: 0 775s 775s # X: 775s #Matrix: 10 by 2 775s rbind( 775s c( 1.000000, 0.000000), # row 1 775s c( 1.000000, 0.000000), # row 2 775s c( 1.000000, 0.000000), # row 3 775s c( 1.000000, 0.000000), # row 4 775s c( 1.000000, 0.000000), # row 5 775s c( 0.000000, 1.000000), # row 6 775s c( 0.000000, 1.000000), # row 7 775s c( 0.000000, 1.000000), # row 8 775s c( 0.000000, 1.000000), # row 9 775s c( 0.000000, 1.000000) # row 10 775s ) 775s [using generalized covariances: max_val - semivariance()] 775s # Covariances (x_i, x_j) matrix C (upper triangle): 775s #Matrix: 10 by 10 775s rbind( 775s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 775s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 775s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 775s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 775s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 775s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 775s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 775s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 775s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 775s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 775s ) 775s 775s # glm->C, LDL' decomposed:: 775s #Matrix: 10 by 10 775s rbind( 775s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 775s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 775s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 775s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 775s ) 775s 775s # X'C-1 X: 775s #Matrix: 2 by 2 775s rbind( 775s c(665.433994, -232.313340), # row 1 775s c(-232.313340, 729.440848) # row 2 775s ) 775s 775s # beta: 775s #Vector: dim: 2 775s c( 0.244216, 0.440933) 775s # Cov(beta), (X'C-1 X)-1: 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.001691, 0.000538), # row 1 775s c( 0.000538, 0.001542) # row 2 775s ) 775s 775s # Corr(beta): 775s #Matrix: 2 by 2 775s rbind( 775s c( 1.000000, 0.333447), # row 1 775s c( 0.333447, 1.000000) # row 2 775s ) 775s 775s # X0 (X values at prediction location x0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 1.000000, 0.000000), # row 1 775s c( 0.000000, 1.000000) # row 2 775s ) 775s 775s # BLUE(mu), E(y(x0)) = X0'beta: 775s #Vector: dim: 2 775s c( 0.244216, 0.440933) 775s # Covariances (x_i, x_0), C0: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.000638, 0.000390), # row 1 775s c( 0.001516, 0.000927), # row 2 775s c( 0.002126, 0.001300), # row 3 775s c( 0.002298, 0.001405), # row 4 775s c( 0.001738, 0.001062), # row 5 775s c( 0.000390, 0.000618), # row 6 775s c( 0.000927, 0.001467), # row 7 775s c( 0.001300, 0.002057), # row 8 775s c( 0.001405, 0.002223), # row 9 775s c( 0.001062, 0.001681) # row 10 775s ) 775s 775s # C-1 C0: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.008927, -0.017995), # row 1 775s c( 0.061935, -0.028550), # row 2 775s c( 0.225195, 0.078344), # row 3 775s c( 0.356735, 0.190177), # row 4 775s c( 0.094128, -0.023136), # row 5 775s c(-0.021119, 0.004935), # row 6 775s c(-0.033508, 0.055601), # row 7 775s c( 0.091947, 0.242576), # row 8 775s c( 0.223200, 0.398927), # row 9 775s c(-0.027153, 0.088995) # row 10 775s ) 775s 775s # [a] Cov_ij(B,B) or Cov_ij(0,0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.004130, 0.000270), # row 1 775s c( 0.000270, 0.003570) # row 2 775s ) 775s 775s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.000129, -0.000107), # row 1 775s c(-0.000107, 0.000089) # row 2 775s ) 775s 775s # [b] c0'C-1 c0: 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.001926, 0.001532), # row 1 775s c( 0.001532, 0.001931) # row 2 775s ) 775s 775s # Best Linear Unbiased Predictor: 775s #Vector: dim: 2 775s c( 0.253090, 0.441258) 775s # MSPE ([a]-[b]+[c]): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.002332, -0.001369), # row 1 775s c(-0.001369, 0.001729) # row 2 775s ) 775s 775s # kriging weights: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.071177, -0.064988), # row 1 775s c( 0.108451, -0.066123), # row 2 775s c( 0.268160, 0.043141), # row 3 775s c( 0.401959, 0.153312), # row 4 775s c( 0.150253, -0.065342), # row 5 775s c(-0.076273, 0.056759), # row 6 775s c(-0.077605, 0.093781), # row 7 775s c( 0.050632, 0.277731), # row 8 775s c( 0.179933, 0.435972), # row 9 775s c(-0.076688, 0.135756) # row 10 775s ) 775s 775s 775s > g$set = list(choleski = 1) # Choleski 775s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 775s Linear Model of Coregionalization found. Good. 775s [using ordinary cokriging] 775s we're at location X: 450 Y: 350 Z: 0 775s zero block size 775s we're at point X: 450 Y: 350 Z: 0 775s 775s # X: 775s #Matrix: 10 by 2 775s rbind( 775s c( 1.000000, 0.000000), # row 1 775s c( 1.000000, 0.000000), # row 2 775s c( 1.000000, 0.000000), # row 3 775s c( 1.000000, 0.000000), # row 4 775s c( 1.000000, 0.000000), # row 5 775s c( 0.000000, 1.000000), # row 6 775s c( 0.000000, 1.000000), # row 7 775s c( 0.000000, 1.000000), # row 8 775s c( 0.000000, 1.000000), # row 9 775s c( 0.000000, 1.000000) # row 10 775s ) 775s [using generalized covariances: max_val - semivariance()] 775s # Covariances (x_i, x_j) matrix C (upper triangle): 775s #Matrix: 10 by 10 775s rbind( 775s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 775s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 775s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 775s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 775s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 775s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 775s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 775s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 775s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 775s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 775s ) 775s 775s # glm->C, Choleski decomposed:: 775s #Matrix: 10 by 10 775s rbind( 775s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 775s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 775s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 775s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 775s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 775s ) 775s 775s # X'C-1 X: 775s #Matrix: 2 by 2 775s rbind( 775s c(665.433994, -232.313340), # row 1 775s c(-232.313340, 729.440848) # row 2 775s ) 775s 775s # beta: 775s #Vector: dim: 2 775s c( 0.244216, 0.440933) 775s # Cov(beta), (X'C-1 X)-1: 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.001691, 0.000538), # row 1 775s c( 0.000538, 0.001542) # row 2 775s ) 775s 775s # Corr(beta): 775s #Matrix: 2 by 2 775s rbind( 775s c( 1.000000, 0.333447), # row 1 775s c( 0.333447, 1.000000) # row 2 775s ) 775s 775s # X0 (X values at prediction location x0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 1.000000, 0.000000), # row 1 775s c( 0.000000, 1.000000) # row 2 775s ) 775s 775s # BLUE(mu), E(y(x0)) = X0'beta: 775s #Vector: dim: 2 775s c( 0.244216, 0.440933) 775s # Covariances (x_i, x_0), C0: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.000638, 0.000390), # row 1 775s c( 0.001516, 0.000927), # row 2 775s c( 0.002126, 0.001300), # row 3 775s c( 0.002298, 0.001405), # row 4 775s c( 0.001738, 0.001062), # row 5 775s c( 0.000390, 0.000618), # row 6 775s c( 0.000927, 0.001467), # row 7 775s c( 0.001300, 0.002057), # row 8 775s c( 0.001405, 0.002223), # row 9 775s c( 0.001062, 0.001681) # row 10 775s ) 775s 775s # C-1 C0: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.008927, -0.017995), # row 1 775s c( 0.061935, -0.028550), # row 2 775s c( 0.225195, 0.078344), # row 3 775s c( 0.356735, 0.190177), # row 4 775s c( 0.094128, -0.023136), # row 5 775s c(-0.021119, 0.004935), # row 6 775s c(-0.033508, 0.055601), # row 7 775s c( 0.091947, 0.242576), # row 8 775s c( 0.223200, 0.398927), # row 9 775s c(-0.027153, 0.088995) # row 10 775s ) 775s 775s # [a] Cov_ij(B,B) or Cov_ij(0,0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.004130, 0.000270), # row 1 775s c( 0.000270, 0.003570) # row 2 775s ) 775s 775s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.000129, -0.000107), # row 1 775s c(-0.000107, 0.000089) # row 2 775s ) 775s 775s # [b] c0'C-1 c0: 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.001926, 0.001532), # row 1 775s c( 0.001532, 0.001931) # row 2 775s ) 775s 775s # Best Linear Unbiased Predictor: 775s #Vector: dim: 2 775s c( 0.253090, 0.441258) 775s # MSPE ([a]-[b]+[c]): 775s #Matrix: 2 by 2 775s rbind( 775s c( 0.002332, -0.001369), # row 1 775s c(-0.001369, 0.001729) # row 2 775s ) 775s 775s # kriging weights: 775s #Matrix: 10 by 2 775s rbind( 775s c( 0.071177, -0.064988), # row 1 775s c( 0.108451, -0.066123), # row 2 775s c( 0.268160, 0.043141), # row 3 775s c( 0.401959, 0.153312), # row 4 775s c( 0.150253, -0.065342), # row 5 775s c(-0.076273, 0.056759), # row 6 775s c(-0.077605, 0.093781), # row 7 775s c( 0.050632, 0.277731), # row 8 775s c( 0.179933, 0.435972), # row 9 775s c(-0.076688, 0.135756) # row 10 775s ) 775s 775s 775s > all.equal(A,B) 775s [1] TRUE 775s > 775s > # TRUE 775s > 775s BEGIN TEST blockkr.R 775s 775s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 775s Copyright (C) 2025 The R Foundation for Statistical Computing 775s Platform: arm-unknown-linux-gnueabihf (32-bit) 775s 775s R is free software and comes with ABSOLUTELY NO WARRANTY. 775s You are welcome to redistribute it under certain conditions. 775s Type 'license()' or 'licence()' for distribution details. 775s 775s R is a collaborative project with many contributors. 775s Type 'contributors()' for more information and 775s 'citation()' on how to cite R or R packages in publications. 775s 775s Type 'demo()' for some demos, 'help()' for on-line help, or 775s 'help.start()' for an HTML browser interface to help. 775s Type 'q()' to quit R. 775s 775s > library(sp) 775s > data(meuse) 775s > coordinates(meuse) = c("x", "y") 775s > new.locs <- SpatialPoints(data.frame( 775s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 775s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 775s > library(gstat) 776s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 776s + block = c(40,40), nmax = 40) 776s [using ordinary kriging] 776s coordinates var1.pred var1.var 776s 1 (181170, 333250) 268.7576 19447.67 776s 2 (180310, 332189) 663.4915 16991.33 776s 3 (180205, 331707) 251.4606 21579.71 776s 4 (178673, 330066) 532.5776 73807.91 776s 5 (178770, 330675) 664.4039 23589.17 776s 6 (178270, 331075) 565.5436 155113.23 776s > 776s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 776s > 776s > disc = c(-15,-5,5,15) 776s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 776s > block.irreg 776s x y 776s 1 -15 -15 776s 2 -5 -15 776s 3 5 -15 776s 4 15 -15 776s 5 -15 -5 776s 6 -5 -5 776s 7 5 -5 776s 8 15 -5 776s 9 -15 5 776s 10 -5 5 776s 11 5 5 776s 12 15 5 776s 13 -15 15 776s 14 -5 15 776s 15 5 15 776s 16 15 15 776s > 776s > # first disable default Gaussian quadrature used for block integration, by 776s > # setting nblockdiscr explicitly: 776s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 776s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 776s [using ordinary kriging] 776s coordinates var1.pred var1.var 776s 1 (181170, 333250) 268.7324 19568.76 776s > # now pass the same block discretization as block.irreg: 776s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 776s + block = block.irreg, nmax = 40) 776s [using ordinary kriging] 776s coordinates var1.pred var1.var 776s 1 (181170, 333250) 268.7324 19568.76 776s > # check weights argument: 776s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 776s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 776s + block = block.irreg, nmax = 40) 776s [using ordinary kriging] 776s coordinates var1.pred var1.var 776s 1 (181170, 333250) 268.7324 19568.76 776s > 776s BEGIN TEST covtable.R 776s 776s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 776s Copyright (C) 2025 The R Foundation for Statistical Computing 776s Platform: arm-unknown-linux-gnueabihf (32-bit) 776s 776s R is free software and comes with ABSOLUTELY NO WARRANTY. 776s You are welcome to redistribute it under certain conditions. 776s Type 'license()' or 'licence()' for distribution details. 776s 776s R is a collaborative project with many contributors. 776s Type 'contributors()' for more information and 776s 'citation()' on how to cite R or R packages in publications. 776s 776s Type 'demo()' for some demos, 'help()' for on-line help, or 776s 'help.start()' for an HTML browser interface to help. 776s Type 'q()' to quit R. 776s 776s > library(gstat) 777s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 777s > d$z=1:4 777s > vv=vgm(model = "Tab", covtable = 777s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 777s > vv 777s model psill maxdist 777s 1 Tab NA 1 777s covariance table: 777s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 777s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 777s [using ordinary kriging] 777s x y var1.pred var1.var 777s 1 0 0 2.5 1.017767 777s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 777s [using ordinary kriging] 777s x y var1.pred var1.var 777s 1 0 0 2.5 1.017863 777s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 777s [using ordinary kriging] 777s x y var1.pred var1.var 777s 1 0 0 1.5 1.267767 777s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 777s [using ordinary kriging] 777s x y var1.pred var1.var 777s 1 0 0 1.5 1.267863 777s > 777s BEGIN TEST cv.R 777s 777s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 777s Copyright (C) 2025 The R Foundation for Statistical Computing 777s Platform: arm-unknown-linux-gnueabihf (32-bit) 777s 777s R is free software and comes with ABSOLUTELY NO WARRANTY. 777s You are welcome to redistribute it under certain conditions. 777s Type 'license()' or 'licence()' for distribution details. 777s 777s R is a collaborative project with many contributors. 777s Type 'contributors()' for more information and 777s 'citation()' on how to cite R or R packages in publications. 777s 777s Type 'demo()' for some demos, 'help()' for on-line help, or 777s 'help.start()' for an HTML browser interface to help. 777s Type 'q()' to quit R. 777s 778s > # try bivariate cokriging; cross validate first variable 778s > library(sp) 778s > data(meuse) 778s > library(gstat) 778s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 778s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 778s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 778s > v=variogram(g) 778s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 778s > g=fit.lmc(v, g) 779s > g 779s data: 779s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 779s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 779s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 779s variograms: 779s model psill range 779s log-zinc Sph 0.7132435 1000 779s log-lead Sph 0.6133020 1000 779s log-copper Sph 0.3634211 1000 779s log-zinc.log-lead Sph 0.6367012 1000 779s log-zinc.log-copper Sph 0.4570044 1000 779s log-lead.log-copper Sph 0.3934910 1000 779s ~x + y 779s > set.seed(13131) 779s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Warning message: 779s In checkNames(value) : 779s attempt to set invalid names: this may lead to problems later on. See ?make.names 779s log.zinc.pred log.zinc.var observed residual 779s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 779s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 779s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 779s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 779s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 779s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 779s zscore fold x y 779s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 779s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 779s Median :-0.10755 Median :3.000 Median :179991 Median :331633 779s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 779s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 779s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 779s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Intrinsic Correlation found. Good. 779s [using ordinary cokriging] 779s Warning message: 779s In checkNames(value) : 779s attempt to set invalid names: this may lead to problems later on. See ?make.names 779s log.zinc.pred log.zinc.var observed residual 779s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 779s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 779s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 779s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 779s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 779s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 779s zscore fold x y 779s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 779s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 779s Median : 0.007242 Median :3.000 Median :179991 Median :331633 779s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 779s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 779s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 779s > 779s BEGIN TEST cv3d.R 779s 779s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 779s Copyright (C) 2025 The R Foundation for Statistical Computing 779s Platform: arm-unknown-linux-gnueabihf (32-bit) 779s 779s R is free software and comes with ABSOLUTELY NO WARRANTY. 779s You are welcome to redistribute it under certain conditions. 779s Type 'license()' or 'licence()' for distribution details. 779s 779s R is a collaborative project with many contributors. 779s Type 'contributors()' for more information and 779s 'citation()' on how to cite R or R packages in publications. 779s 779s Type 'demo()' for some demos, 'help()' for on-line help, or 779s 'help.start()' for an HTML browser interface to help. 779s Type 'q()' to quit R. 779s 779s > options(digits = 4) 779s > set.seed(1131) 779s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 779s > library(gstat) 780s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 780s > summary(xx) 780s var1.pred var1.var observed residual 780s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 780s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 780s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 780s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 780s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 780s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 780s zscore fold x y 780s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 780s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 780s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 780s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 780s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 780s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 780s z 780s Min. :0.00164 780s 1st Qu.:0.18646 780s Median :0.44850 780s Mean :0.47142 780s 3rd Qu.:0.72403 780s Max. :0.99420 780s > 780s BEGIN TEST fit.R 781s 781s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 781s Copyright (C) 2025 The R Foundation for Statistical Computing 781s Platform: arm-unknown-linux-gnueabihf (32-bit) 781s 781s R is free software and comes with ABSOLUTELY NO WARRANTY. 781s You are welcome to redistribute it under certain conditions. 781s Type 'license()' or 'licence()' for distribution details. 781s 781s R is a collaborative project with many contributors. 781s Type 'contributors()' for more information and 781s 'citation()' on how to cite R or R packages in publications. 781s 781s Type 'demo()' for some demos, 'help()' for on-line help, or 781s 'help.start()' for an HTML browser interface to help. 781s Type 'q()' to quit R. 781s 781s > library(sp) 781s > data(meuse) 781s > library(gstat) 782s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 782s > v$gamma=c(0.5,1,2,3,3) 782s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 782s model psill range 782s 1 Nug 0.000000 0.00 782s 2 Sph 7.878195 1567.77 782s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 782s Warning message: 782s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 782s partial sill or nugget fixed at zero value 782s model psill range 782s 1 Nug 0.000000 0.00 782s 2 Sph 7.878195 1567.77 782s > 782s BEGIN TEST krige0.R 782s 782s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 782s Copyright (C) 2025 The R Foundation for Statistical Computing 782s Platform: arm-unknown-linux-gnueabihf (32-bit) 782s 782s R is free software and comes with ABSOLUTELY NO WARRANTY. 782s You are welcome to redistribute it under certain conditions. 782s Type 'license()' or 'licence()' for distribution details. 782s 782s R is a collaborative project with many contributors. 782s Type 'contributors()' for more information and 782s 'citation()' on how to cite R or R packages in publications. 782s 782s Type 'demo()' for some demos, 'help()' for on-line help, or 782s 'help.start()' for an HTML browser interface to help. 782s Type 'q()' to quit R. 782s 782s > # test -- load data: 782s > library(sp) 782s > data(meuse) 782s > coordinates(meuse) = ~x+y 782s > data(meuse.grid) 782s > gridded(meuse.grid) = ~x+y 782s > 782s > library(gstat) 783s > # test -- idw 783s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 783s > x <- idw(zinc~1, meuse, meuse.grid) 783s [inverse distance weighted interpolation] 783s > all.equal(x$var1.pred, meuse.grid$idw) 783s [1] TRUE 783s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 783s > v = vgm(1, "Exp", 500) 783s > # test sk: 783s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 783s > rownames(x0$pred)=NULL 783s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 783s [using simple kriging] 784s > all.equal(x$var1.pred, x0$pred[,1]) 784s [1] TRUE 784s > all.equal(x$var1.var, x0$var) 784s [1] TRUE 784s > # test ok: 784s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 784s > rownames(x0$pred)=NULL 784s > names(x0$var)=NULL 784s > x <- krige(zinc~1, meuse, meuse.grid, v) 784s [using ordinary kriging] 784s > all.equal(x$var1.pred, x0$pred[,1]) 784s [1] TRUE 784s > all.equal(x$var1.var, x0$var) 784s [1] TRUE 784s > # test uk: 784s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 784s > rownames(x0$pred)=NULL 784s > names(x0$var)=NULL 784s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 784s [using universal kriging] 784s > all.equal(x$var1.pred, x0$pred[,1]) 784s [1] TRUE 784s > all.equal(x$var1.var, x0$var) 784s [1] TRUE 784s > 784s BEGIN TEST line.R 784s 784s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 784s Copyright (C) 2025 The R Foundation for Statistical Computing 784s Platform: arm-unknown-linux-gnueabihf (32-bit) 784s 784s R is free software and comes with ABSOLUTELY NO WARRANTY. 784s You are welcome to redistribute it under certain conditions. 784s Type 'license()' or 'licence()' for distribution details. 784s 784s R is a collaborative project with many contributors. 784s Type 'contributors()' for more information and 784s 'citation()' on how to cite R or R packages in publications. 784s 784s Type 'demo()' for some demos, 'help()' for on-line help, or 784s 'help.start()' for an HTML browser interface to help. 784s Type 'q()' to quit R. 784s 785s > options(digits=5) 785s > library(sp) 785s > data(meuse.grid) 785s > gridded(meuse.grid) = ~x+y 785s > data(meuse) 785s > coordinates(meuse) = ~x+y 785s > 785s > # choose arbitrary line over the grid: 785s > image(meuse.grid["dist"],axes=T) 785s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 785s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 785s > plot(Sl,add=T,col='green') 785s > 785s > # use the default spsample arguments of predict.gstat: 785s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 785s > plot(pts, pch=3, cex=.2, add=T) 785s > 785s > library(gstat) 786s > v = vgm(.6, "Sph", 900, .06) 786s > out1 = krige(log(zinc)~1, meuse, Sl, v) 786s [using ordinary kriging] 786s > out1 786s An object of class "SpatialLinesDataFrame" 786s Slot "data": 786s x y var1.pred var1.var 786s a 180333 332167 6.1618 0.008025 786s 786s Slot "lines": 786s [[1]] 786s An object of class "Lines" 786s Slot "Lines": 786s [[1]] 786s An object of class "Line" 786s Slot "coords": 786s [,1] [,2] 786s [1,] 180000 331000 786s [2,] 180000 332000 786s [3,] 181000 333500 786s 786s 786s 786s Slot "ID": 786s [1] "a" 786s 786s 786s 786s Slot "bbox": 786s min max 786s x 180000 181000 786s y 331000 333500 786s 786s Slot "proj4string": 786s Coordinate Reference System: 786s Deprecated Proj.4 representation: NA 786s 786s > 786s > points(180333,332167,pch=3,cex=2) 786s > 786s > # use the same line as block discretization, and predict for (0,0) 786s > # (because the block discretizing points are not centered) 786s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 786s [using ordinary kriging] 786s > out2 786s coordinates var1.pred var1.var 786s 1 (0, 0) 6.1618 0.008025 786s > 786s > compare.krigingLines = function(formula, data, newdata, model) { 786s + out1 = krige(formula, data, newdata, model) 786s + pts = spsample(newdata, n=500, 'regular', offset=.5) 786s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 786s + print("difference:") 786s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 786s + } 786s > 786s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 786s [using ordinary kriging] 786s [using ordinary kriging] 786s [1] "difference:" 786s var1.pred var1.var 786s a 0 0 786s > 786s > # one line, consisting of two line segments: 786s > pp2 = rbind(c(181000,333500),c(181000,332500)) 786s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 786s > krige(log(zinc)~1, meuse, Sl2, v) 786s [using ordinary kriging] 786s An object of class "SpatialLinesDataFrame" 786s Slot "data": 786s x y var1.pred var1.var 786s a 180667 332583 6.0424 0.0053191 786s 786s Slot "lines": 786s [[1]] 786s An object of class "Lines" 786s Slot "Lines": 786s [[1]] 786s An object of class "Line" 786s Slot "coords": 786s [,1] [,2] 786s [1,] 180000 331000 786s [2,] 180000 332000 786s [3,] 181000 333500 786s 786s 786s [[2]] 786s An object of class "Line" 786s Slot "coords": 786s [,1] [,2] 786s [1,] 181000 333500 786s [2,] 181000 332500 786s 786s 786s 786s Slot "ID": 786s [1] "a" 786s 786s 786s 786s Slot "bbox": 786s min max 786s x 180000 181000 786s y 331000 333500 786s 786s Slot "proj4string": 786s Coordinate Reference System: 786s Deprecated Proj.4 representation: NA 786s 786s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 786s [using ordinary kriging] 786s [using ordinary kriging] 786s [1] "difference:" 786s var1.pred var1.var 786s a 0 0 786s > 786s > # two seperate line segments: 786s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 786s > krige(log(zinc)~1, meuse, Sl3, v) 786s [using ordinary kriging] 786s An object of class "SpatialLinesDataFrame" 786s Slot "data": 786s x y var1.pred var1.var 786s a 180333 332167 6.1618 0.008025 786s b 181000 333000 5.7060 0.011043 786s 786s Slot "lines": 786s [[1]] 786s An object of class "Lines" 786s Slot "Lines": 786s [[1]] 786s An object of class "Line" 786s Slot "coords": 786s [,1] [,2] 786s [1,] 180000 331000 786s [2,] 180000 332000 786s [3,] 181000 333500 786s 786s 786s 786s Slot "ID": 786s [1] "a" 786s 786s 786s [[2]] 786s An object of class "Lines" 786s Slot "Lines": 786s [[1]] 786s An object of class "Line" 786s Slot "coords": 786s [,1] [,2] 786s [1,] 181000 333500 786s [2,] 181000 332500 786s 786s 786s 786s Slot "ID": 786s [1] "b" 786s 786s 786s 786s Slot "bbox": 786s min max 786s x 180000 181000 786s y 331000 333500 786s 786s Slot "proj4string": 786s Coordinate Reference System: 786s Deprecated Proj.4 representation: NA 786s 786s > 786s BEGIN TEST merge.R 786s 786s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 786s Copyright (C) 2025 The R Foundation for Statistical Computing 786s Platform: arm-unknown-linux-gnueabihf (32-bit) 786s 786s R is free software and comes with ABSOLUTELY NO WARRANTY. 786s You are welcome to redistribute it under certain conditions. 786s Type 'license()' or 'licence()' for distribution details. 786s 786s R is a collaborative project with many contributors. 786s Type 'contributors()' for more information and 786s 'citation()' on how to cite R or R packages in publications. 786s 786s Type 'demo()' for some demos, 'help()' for on-line help, or 786s 'help.start()' for an HTML browser interface to help. 786s Type 'q()' to quit R. 786s 786s > options(digits=6) 786s > # illustrates the use of merge, for merging parameters accross variables: 786s > # Z1=m+e1(s) 786s > # Z2=m+e2(s) 786s > # Z1 and Z2 each have a different variogram, but share the parameter m 786s > # see documentation of gstat() function 786s > library(gstat) 787s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 787s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 787s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 787s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 787s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 787s > predict(g, data.frame(x=1,y=1), debug = 32) 787s Intrinsic Correlation found. Good. 787s [using ordinary cokriging] 787s we're at location X: 1 Y: 1 Z: 0 787s zero block size 787s we're at point X: 1 Y: 1 Z: 0 787s 787s # X: 787s #Matrix: 4 by 1 787s rbind( 787s c( 1.000000), # row 1 787s c( 1.000000), # row 2 787s c( 1.000000), # row 3 787s c( 1.000000) # row 4 787s ) 787s [using generalized covariances: max_val - semivariance()] 787s # Covariances (x_i, x_j) matrix C (upper triangle): 787s #Matrix: 4 by 4 787s rbind( 787s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 787s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 787s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 787s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 787s ) 787s 787s # glm->C, Choleski decomposed:: 787s #Matrix: 4 by 4 787s rbind( 787s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 787s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 787s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 787s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 787s ) 787s 787s # X'C-1 X: 787s #Matrix: 1 by 1 787s rbind( 787s c( 3.245289) # row 1 787s ) 787s 787s # beta: 787s #Vector: dim: 1 787s c( 2.500000) 787s # Cov(beta), (X'C-1 X)-1: 787s #Matrix: 1 by 1 787s rbind( 787s c( 0.308139) # row 1 787s ) 787s 787s # Corr(beta): 787s #Matrix: 1 by 1 787s rbind( 787s c( 1.000000) # row 1 787s ) 787s 787s # X0 (X values at prediction location x0): 787s #Matrix: 1 by 2 787s rbind( 787s c( 1.000000, 1.000000) # row 1 787s ) 787s 787s # BLUE(mu), E(y(x0)) = X0'beta: 787s #Vector: dim: 2 787s c( 2.500000, 2.500000) 787s # Covariances (x_i, x_0), C0: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.243117, 0.121558), # row 1 787s c( 0.243117, 0.121558), # row 2 787s c( 0.121558, 0.243117), # row 3 787s c( 0.121558, 0.243117) # row 4 787s ) 787s 787s # C-1 C0: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.206482, 0.089387), # row 1 787s c( 0.206482, 0.089387), # row 2 787s c( 0.089387, 0.206482), # row 3 787s c( 0.089387, 0.206482) # row 4 787s ) 787s 787s # [a] Cov_ij(B,B) or Cov_ij(0,0): 787s #Matrix: 2 by 2 787s rbind( 787s c( 1.000000, 0.500000), # row 1 787s c( 0.500000, 1.000000) # row 2 787s ) 787s 787s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 787s #Matrix: 2 by 2 787s rbind( 787s c( 0.051360, 0.051360), # row 1 787s c( 0.051360, 0.051360) # row 2 787s ) 787s 787s # [b] c0'C-1 c0: 787s #Matrix: 2 by 2 787s rbind( 787s c( 0.122130, 0.093662), # row 1 787s c( 0.093662, 0.122130) # row 2 787s ) 787s 787s # Best Linear Unbiased Predictor: 787s #Vector: dim: 2 787s c( 2.031619, 2.968381) 787s # MSPE ([a]-[b]+[c]): 787s #Matrix: 2 by 2 787s rbind( 787s c( 0.929230, 0.457698), # row 1 787s c( 0.457698, 0.929230) # row 2 787s ) 787s 787s # kriging weights: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.308548, 0.191452), # row 1 787s c( 0.308548, 0.191452), # row 2 787s c( 0.191452, 0.308548), # row 3 787s c( 0.191452, 0.308548) # row 4 787s ) 787s 787s 787s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 787s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 787s > 787s > # Z1 and Z2 share a regression slope: 787s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 787s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 787s + merge=list(c("d1",2,"d2",2))) 787s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 787s > predict(g, data.frame(x=1,y=1), debug = 32) 787s Intrinsic Correlation found. Good. 787s [using universal cokriging] 787s we're at location X: 1 Y: 1 Z: 0 787s zero block size 787s we're at point X: 1 Y: 1 Z: 0 787s 787s # X: 787s #Matrix: 4 by 3 787s rbind( 787s c( 1.000000, 0.000000, 0.000000), # row 1 787s c( 1.000000, 2.000000, 0.000000), # row 2 787s c( 0.000000, 0.000000, 1.000000), # row 3 787s c( 0.000000, 2.000000, 1.000000) # row 4 787s ) 787s [using generalized covariances: max_val - semivariance()] 787s # Covariances (x_i, x_j) matrix C (upper triangle): 787s #Matrix: 4 by 4 787s rbind( 787s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 787s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 787s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 787s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 787s ) 787s 787s # glm->C, Choleski decomposed:: 787s #Matrix: 4 by 4 787s rbind( 787s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 787s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 787s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 787s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 787s ) 787s 787s # X'C-1 X: 787s #Matrix: 3 by 3 787s rbind( 787s c( 1.774607, 1.622645, -0.151962), # row 1 787s c( 1.622645, 7.676050, 1.622645), # row 2 787s c(-0.151962, 1.622645, 1.774607) # row 3 787s ) 787s 787s # beta: 787s #Vector: dim: 3 787s c( 0.000000, 0.500000, 4.000000) 787s # Cov(beta), (X'C-1 X)-1: 787s #Matrix: 3 by 3 787s rbind( 787s c( 0.793363, -0.225695, 0.274305), # row 1 787s c(-0.225695, 0.225695, -0.225695), # row 2 787s c( 0.274305, -0.225695, 0.793363) # row 3 787s ) 787s 787s # Corr(beta): 787s #Matrix: 3 by 3 787s rbind( 787s c( 1.000000, -0.533366, 0.345750), # row 1 787s c(-0.533366, 1.000000, -0.533366), # row 2 787s c( 0.345750, -0.533366, 1.000000) # row 3 787s ) 787s 787s # X0 (X values at prediction location x0): 787s #Matrix: 3 by 2 787s rbind( 787s c( 1.000000, 0.000000), # row 1 787s c( 1.000000, 1.000000), # row 2 787s c( 0.000000, 1.000000) # row 3 787s ) 787s 787s # BLUE(mu), E(y(x0)) = X0'beta: 787s #Vector: dim: 2 787s c( 0.500000, 4.500000) 787s # Covariances (x_i, x_0), C0: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.243117, 0.121558), # row 1 787s c( 0.243117, 0.121558), # row 2 787s c( 0.121558, 0.243117), # row 3 787s c( 0.121558, 0.243117) # row 4 787s ) 787s 787s # C-1 C0: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.206482, 0.089387), # row 1 787s c( 0.206482, 0.089387), # row 2 787s c( 0.089387, 0.206482), # row 3 787s c( 0.089387, 0.206482) # row 4 787s ) 787s 787s # [a] Cov_ij(B,B) or Cov_ij(0,0): 787s #Matrix: 2 by 2 787s rbind( 787s c( 1.000000, 0.500000), # row 1 787s c( 0.500000, 1.000000) # row 2 787s ) 787s 787s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 787s #Matrix: 2 by 2 787s rbind( 787s c( 0.203564, -0.100844), # row 1 787s c(-0.100844, 0.203564) # row 2 787s ) 787s 787s # [b] c0'C-1 c0: 787s #Matrix: 2 by 2 787s rbind( 787s c( 0.122130, 0.093662), # row 1 787s c( 0.093662, 0.122130) # row 2 787s ) 787s 787s # Best Linear Unbiased Predictor: 787s #Vector: dim: 2 787s c( 0.500000, 4.500000) 787s # MSPE ([a]-[b]+[c]): 787s #Matrix: 2 by 2 787s rbind( 787s c( 1.081434, 0.305494), # row 1 787s c( 0.305494, 1.081434) # row 2 787s ) 787s 787s # kriging weights: 787s #Matrix: 4 by 2 787s rbind( 787s c( 0.500000, 0.000000), # row 1 787s c( 0.500000, 0.000000), # row 2 787s c( 0.000000, 0.500000), # row 3 787s c( 0.000000, 0.500000) # row 4 787s ) 787s 787s 787s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 787s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 787s > 787s BEGIN TEST na.action.R 787s 787s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 787s Copyright (C) 2025 The R Foundation for Statistical Computing 787s Platform: arm-unknown-linux-gnueabihf (32-bit) 787s 787s R is free software and comes with ABSOLUTELY NO WARRANTY. 787s You are welcome to redistribute it under certain conditions. 787s Type 'license()' or 'licence()' for distribution details. 787s 787s R is a collaborative project with many contributors. 787s Type 'contributors()' for more information and 787s 'citation()' on how to cite R or R packages in publications. 787s 787s Type 'demo()' for some demos, 'help()' for on-line help, or 787s 'help.start()' for an HTML browser interface to help. 787s Type 'q()' to quit R. 787s 787s > library(sp) 787s > 787s > data(meuse) 787s > data(meuse.grid) 787s > 787s > set.seed(13131) # reproduce results 787s > 787s > # select 10 random rows; 787s > # create two missing values in the coordinates: 787s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 787s > m[c(2,8), "x"] = NA 787s > 787s > library(gstat) 788s > ## this is not allowed anymore: 788s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 788s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 788s missing values in object 788s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 788s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 788s missing values in object 788s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 788s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 788s missing values in object 788s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 788s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 788s missing values in object 788s > 788s > # select 10 random rows; 788s > # create two missing values in the regressor variable: 788s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 788s > m[c(3,7), "dist"] = NA 788s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 788s [ordinary or weighted least squares prediction] 788s x y var1.pred var1.var 788s 1 178860 330860 6.530134 0.2415196 788s 2 180260 331860 5.389567 0.2406041 788s 3 180100 331860 NA NA 788s 4 180460 331820 5.213370 0.2417197 788s 5 179660 330580 5.550859 0.2398778 788s 6 179740 330300 6.108648 0.2395392 788s 7 180220 330660 NA NA 788s 8 178580 329820 6.533801 0.2415453 788s 9 180100 331900 5.580264 0.2397758 788s 10 180780 331900 5.095967 0.2426499 788s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 788s [ordinary or weighted least squares prediction] 788s x y var1.pred var1.var 788s 1877 178860 330860 6.530134 0.2415196 788s 1015 180260 331860 5.389567 0.2406041 788s 1056 180460 331820 5.213370 0.2417197 788s 2199 179660 330580 5.550859 0.2398778 788s 2556 179740 330300 6.108648 0.2395392 788s 2985 178580 329820 6.533801 0.2415453 788s 975 180100 331900 5.580264 0.2397758 788s 992 180780 331900 5.095967 0.2426499 788s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 788s [ordinary or weighted least squares prediction] 788s x y var1.pred var1.var 788s 1877 178860 330860 6.530134 0.2415196 788s 1015 180260 331860 5.389567 0.2406041 788s 1056 180460 331820 5.213370 0.2417197 788s 2199 179660 330580 5.550859 0.2398778 788s 2556 179740 330300 6.108648 0.2395392 788s 2985 178580 329820 6.533801 0.2415453 788s 975 180100 331900 5.580264 0.2397758 788s 992 180780 331900 5.095967 0.2426499 788s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 788s > 788s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 788s missing values in object 788s BEGIN TEST rings.R 788s 788s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 788s Copyright (C) 2025 The R Foundation for Statistical Computing 788s Platform: arm-unknown-linux-gnueabihf (32-bit) 788s 788s R is free software and comes with ABSOLUTELY NO WARRANTY. 788s You are welcome to redistribute it under certain conditions. 788s Type 'license()' or 'licence()' for distribution details. 788s 788s R is a collaborative project with many contributors. 788s Type 'contributors()' for more information and 788s 'citation()' on how to cite R or R packages in publications. 788s 788s Type 'demo()' for some demos, 'help()' for on-line help, or 788s 'help.start()' for an HTML browser interface to help. 788s Type 'q()' to quit R. 788s 788s > library(sp) 789s > library(gstat) 789s > set.seed(13331) 789s > 789s > x = runif(10) 789s > y = runif(10) 789s > z = rnorm(10) 789s > d = data.frame(x=x,y=y,z=z) 789s > bl = c(1,1) 789s > 789s > nd = data.frame(x=.5, y=.5) 789s > 789s > # single block: 789s > library(sp) 789s > coordinates(d) = ~x+y 789s > nd = SpatialPoints(nd) 789s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 789s + set = list(nb=4)) 789s [using ordinary kriging] 789s > 789s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 789s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 789s > a = data.frame(a = 1, b = 2) 789s > rownames(a) = "xx" 789s > r1df = SpatialPolygonsDataFrame(r1, a) 789s > 789s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 789s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 789s > yy = predict(g, r1df, block = bl, sps.args = args) 789s [using ordinary kriging] 789s > 789s > xx = as.data.frame(xx) 789s > yy = as.data.frame(yy) 789s > row.names(xx) = row.names(yy) 789s > print(all.equal(xx,yy)) 789s [1] TRUE 789s > 789s > ## multiple blocks of equal size: 789s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 789s > nd = SpatialPoints(nd) 789s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 789s + set = list(nb=4)) 789s [using ordinary kriging] 789s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 789s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 789s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 789s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 789s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 789s > r1 = SpatialPolygons(list( 789s + Polygons(list(Polygon(ring0)), ID = "x0"), 789s + Polygons(list(Polygon(ring1)), ID = "x1"), 789s + Polygons(list(Polygon(ring2)), ID = "x2"), 789s + Polygons(list(Polygon(ring3)), ID = "x3"), 789s + Polygons(list(Polygon(ring4)), ID = "x4") 789s + )) 790s > df = data.frame(a=rep(1,5), b= rep(1,5)) 790s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 790s > r1df = SpatialPolygonsDataFrame(r1, df) 790s > 790s > yy = predict(g, r1, block = bl, sps.args = args) 790s [using ordinary kriging] 790s > xx = as.data.frame(xx) 790s > yy = as.data.frame(yy) 790s > row.names(xx) = row.names(yy) 790s > all.equal(xx, yy) 790s [1] TRUE 790s > 790s > ## multiple blocks of equal size: 790s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 790s > yy = predict(g, r1, block = bl, sps.args = args) 790s [using ordinary kriging] 790s > xx = as.data.frame(xx) 790s > yy = as.data.frame(yy) 790s > row.names(xx) = row.names(yy) 790s > print(all.equal(xx, yy)) 790s [1] TRUE 790s > 790s > ## multiple blocks of varying size: 790s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 790s > nd = SpatialPoints(nd) 790s > bl = c(1,1) 790s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 790s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 790s + set = list(nb=4)) 790s [using ordinary kriging] 790s > bl = c(2,2) 790s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 790s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 790s + set = list(nb=4)) 790s [using ordinary kriging] 790s > bl = c(3,3) 790s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 790s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 790s + set = list(nb=4)) 790s [using ordinary kriging] 790s > r1 = SpatialPolygons(list( 790s + Polygons(list(Polygon(ring0)), ID = "x0"), 790s + Polygons(list(Polygon(ring1)), ID = "x1"), 790s + Polygons(list(Polygon(ring2)), ID = "x2") 790s + )) 790s > df = data.frame(a = rep(1,3), b = rep(1,3)) 790s > rownames(df) = c("x0", "x1", "x2") 790s > r1df = SpatialPolygonsDataFrame(r1, df) 790s > 790s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 790s > yy = predict(g, r1df, block = bl, sps.args = args) 790s [using ordinary kriging] 790s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 790s > row.names(xx) = 1:3 790s > xx = as.data.frame(xx) 790s > yy = as.data.frame(yy) 790s > row.names(xx) = row.names(yy) 790s > print(all.equal(xx, yy)) 790s [1] TRUE 790s > 790s BEGIN TEST sim.R 790s 790s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 790s Copyright (C) 2025 The R Foundation for Statistical Computing 790s Platform: arm-unknown-linux-gnueabihf (32-bit) 790s 790s R is free software and comes with ABSOLUTELY NO WARRANTY. 790s You are welcome to redistribute it under certain conditions. 790s Type 'license()' or 'licence()' for distribution details. 790s 790s R is a collaborative project with many contributors. 790s Type 'contributors()' for more information and 790s 'citation()' on how to cite R or R packages in publications. 790s 790s Type 'demo()' for some demos, 'help()' for on-line help, or 790s 'help.start()' for an HTML browser interface to help. 790s Type 'q()' to quit R. 790s 790s > options(digits=6) 790s > library(sp) 790s > data(meuse) 790s > set.seed(158229572) 790s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 790s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 790s > library(gstat) 791s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 791s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 791s + block = c(40,40), nmax = 40, nsim = 10) 791s drawing 10 GLS realisations of beta... 791s [using conditional Gaussian simulation] 791s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 791s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 791s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 791s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 791s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 791s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 791s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 791s sim8 sim9 sim10 791s 1 294.107 113.347 279.991 791s 2 776.498 724.160 901.692 791s 3 338.021 630.244 140.272 791s 4 127.301 957.242 444.007 791s 5 533.773 748.144 623.960 791s 6 1084.170 537.604 -214.972 791s > 791s BEGIN TEST stars.R 791s 791s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 791s Copyright (C) 2025 The R Foundation for Statistical Computing 791s Platform: arm-unknown-linux-gnueabihf (32-bit) 791s 791s R is free software and comes with ABSOLUTELY NO WARRANTY. 791s You are welcome to redistribute it under certain conditions. 791s Type 'license()' or 'licence()' for distribution details. 791s 791s R is a collaborative project with many contributors. 791s Type 'contributors()' for more information and 791s 'citation()' on how to cite R or R packages in publications. 791s 791s Type 'demo()' for some demos, 'help()' for on-line help, or 791s 'help.start()' for an HTML browser interface to help. 791s Type 'q()' to quit R. 791s 791s > Sys.setenv(TZ = "UTC") 791s > 791s > # 0. using sp: 791s > 791s > suppressPackageStartupMessages(library(sp)) 791s > demo(meuse, ask = FALSE) 791s 791s 791s demo(meuse) 791s ---- ~~~~~ 791s 791s > require(sp) 791s 791s > crs = CRS("EPSG:28992") 792s Warning: using units on a 32 bit system, which may not work correctly: https://bugs.debian.org/1102591 792s 792s > data("meuse") 792s 792s > coordinates(meuse) <- ~x+y 792s 792s > proj4string(meuse) <- crs 792s 792s > data("meuse.grid") 792s 792s > coordinates(meuse.grid) <- ~x+y 792s 792s > gridded(meuse.grid) <- TRUE 792s 792s > proj4string(meuse.grid) <- crs 792s 792s > data("meuse.riv") 792s 792s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 792s 792s > proj4string(meuse.riv) <- crs 792s 792s > data("meuse.area") 792s 792s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 792s 792s > proj4string(meuse.area) <- crs 792s > suppressPackageStartupMessages(library(gstat)) 793s > v = variogram(log(zinc)~1, meuse) 793s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 793s model psill range 793s 1 Nug 0.05066243 0.0000 793s 2 Sph 0.59060780 897.0209 793s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 793s [using ordinary kriging] 793s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 794s [using ordinary kriging] 794s > 794s > # 1. using sf: 794s > suppressPackageStartupMessages(library(sf)) 794s > demo(meuse_sf, ask = FALSE, echo = FALSE) 794s > # reloads meuse as data.frame, so 794s > demo(meuse, ask = FALSE) 794s 794s 794s demo(meuse) 794s ---- ~~~~~ 794s 794s > require(sp) 794s 794s > crs = CRS("EPSG:28992") 794s 794s > data("meuse") 794s 794s > coordinates(meuse) <- ~x+y 794s 794s > proj4string(meuse) <- crs 794s 794s > data("meuse.grid") 794s 794s > coordinates(meuse.grid) <- ~x+y 794s 794s > gridded(meuse.grid) <- TRUE 794s 794s > proj4string(meuse.grid) <- crs 794s 794s > data("meuse.riv") 794s 794s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 794s 794s > proj4string(meuse.riv) <- crs 794s 794s > data("meuse.area") 794s 794s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 794s 794s > proj4string(meuse.area) <- crs 794s > 794s > v = variogram(log(zinc)~1, meuse_sf) 794s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 794s model psill range 794s 1 Nug 0.05066243 0.0000 794s 2 Sph 0.59060780 897.0209 794s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 795s [using ordinary kriging] 795s > 795s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 795s [1] TRUE 795s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 795s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 795s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 795s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 795s > 795s > # 2. using stars for grid: 795s > 795s > suppressPackageStartupMessages(library(stars)) 795s > st = st_as_stars(meuse.grid) 795s > st_crs(st) 795s Coordinate Reference System: 795s User input: Amersfoort / RD New 795s wkt: 795s PROJCRS["Amersfoort / RD New", 795s BASEGEOGCRS["Amersfoort", 795s DATUM["Amersfoort", 795s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 795s LENGTHUNIT["metre",1]]], 795s PRIMEM["Greenwich",0, 795s ANGLEUNIT["degree",0.0174532925199433]], 795s ID["EPSG",4289]], 795s CONVERSION["RD New", 795s METHOD["Oblique Stereographic", 795s ID["EPSG",9809]], 795s PARAMETER["Latitude of natural origin",52.1561605555556, 795s ANGLEUNIT["degree",0.0174532925199433], 795s ID["EPSG",8801]], 795s PARAMETER["Longitude of natural origin",5.38763888888889, 795s ANGLEUNIT["degree",0.0174532925199433], 795s ID["EPSG",8802]], 795s PARAMETER["Scale factor at natural origin",0.9999079, 795s SCALEUNIT["unity",1], 795s ID["EPSG",8805]], 795s PARAMETER["False easting",155000, 795s LENGTHUNIT["metre",1], 795s ID["EPSG",8806]], 795s PARAMETER["False northing",463000, 795s LENGTHUNIT["metre",1], 795s ID["EPSG",8807]]], 795s CS[Cartesian,2], 795s AXIS["easting (X)",east, 795s ORDER[1], 795s LENGTHUNIT["metre",1]], 795s AXIS["northing (Y)",north, 795s ORDER[2], 795s LENGTHUNIT["metre",1]], 795s USAGE[ 795s SCOPE["Engineering survey, topographic mapping."], 795s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 795s BBOX[50.75,3.2,53.7,7.22]], 795s ID["EPSG",28992]] 795s > 795s > # compare inputs: 795s > sp = as(st, "Spatial") 795s > fullgrid(meuse.grid) = TRUE 795s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 795s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 795s [2] "Names: 1 string mismatch" 795s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 795s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 795s [2] "Names: 1 string mismatch" 795s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 795s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 795s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 795s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 795s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 795s > 795s > # kriging: 795s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 795s > k_st = if (Sys.getenv("USER") == "travis") { 795s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 795s + } else { 795s + krige(log(zinc)~1, meuse_sf, st, v.fit) 795s + } 795s [using ordinary kriging] 795s > k_st 795s stars object with 2 dimensions and 2 attributes 795s attribute(s): 795s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 795s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 795s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 795s dimension(s): 795s from to offset delta x/y 795s x 1 78 178440 40 [x] 795s y 1 104 333760 -40 [y] 795s > 795s > # handle factors, when going to stars? 795s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 795s > st_as_stars(k_sp_grd) 795s stars object with 2 dimensions and 3 attributes 795s attribute(s): 795s var1.pred var1.var cls 795s Min. :4.777 Min. :0.0855 (0,5]: 316 795s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 795s Median :5.573 Median :0.1622 (6,7]: 962 795s Mean :5.707 Mean :0.1853 (7,8]: 47 795s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 795s Max. :7.440 Max. :0.5003 NA's :5009 795s NA's :5009 NA's :5009 795s dimension(s): 795s from to offset delta refsys x/y 795s x 1 78 178440 40 Amersfoort / RD New [x] 795s y 1 104 333760 -40 Amersfoort / RD New [y] 795s > if (require(raster, quietly = TRUE)) { 795s + print(st_as_stars(raster::stack(k_sp_grd))) # check 795s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 795s + } 804s stars object with 3 dimensions and 1 attribute 804s attribute(s): 804s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 804s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 804s dimension(s): 804s from to offset delta refsys values 804s x 1 78 178440 40 Amersfoort / RD New NULL 804s y 1 104 333760 -40 Amersfoort / RD New NULL 804s band 1 3 NA NA NA var1.pred, var1.var , cls 804s x/y 804s x [x] 804s y [y] 804s band 805s [1] TRUE 805s > 805s > suppressPackageStartupMessages(library(spacetime)) 805s > 805s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 805s > n = 4 805s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 805s + stars:::create_dimensions(list( 805s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 805s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 805s + time = stars:::create_dimension(values = tm + 1:n)), 805s + raster = stars:::get_raster(dimensions = c("x", "y"))) 805s + ) 805s > s 805s stars object with 3 dimensions and 1 attribute 805s attribute(s): 805s Min. 1st Qu. Median Mean 3rd Qu. Max. 805s foo 1 16.75 32.5 32.5 48.25 64 805s dimension(s): 805s from to offset delta refsys x/y 805s x 1 4 10 0.5 NA [x] 805s y 1 4 0 -0.7 NA [y] 805s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 805s > 805s > as.data.frame(s) 805s x y time foo 805s 1 10.25 -0.35 2019-02-25 15:37:25 1 805s 2 10.75 -0.35 2019-02-25 15:37:25 2 805s 3 11.25 -0.35 2019-02-25 15:37:25 3 805s 4 11.75 -0.35 2019-02-25 15:37:25 4 805s 5 10.25 -1.05 2019-02-25 15:37:25 5 805s 6 10.75 -1.05 2019-02-25 15:37:25 6 805s 7 11.25 -1.05 2019-02-25 15:37:25 7 805s 8 11.75 -1.05 2019-02-25 15:37:25 8 805s 9 10.25 -1.75 2019-02-25 15:37:25 9 805s 10 10.75 -1.75 2019-02-25 15:37:25 10 805s 11 11.25 -1.75 2019-02-25 15:37:25 11 805s 12 11.75 -1.75 2019-02-25 15:37:25 12 805s 13 10.25 -2.45 2019-02-25 15:37:25 13 805s 14 10.75 -2.45 2019-02-25 15:37:25 14 805s 15 11.25 -2.45 2019-02-25 15:37:25 15 805s 16 11.75 -2.45 2019-02-25 15:37:25 16 805s 17 10.25 -0.35 2019-02-25 15:37:26 17 805s 18 10.75 -0.35 2019-02-25 15:37:26 18 805s 19 11.25 -0.35 2019-02-25 15:37:26 19 805s 20 11.75 -0.35 2019-02-25 15:37:26 20 805s 21 10.25 -1.05 2019-02-25 15:37:26 21 805s 22 10.75 -1.05 2019-02-25 15:37:26 22 805s 23 11.25 -1.05 2019-02-25 15:37:26 23 805s 24 11.75 -1.05 2019-02-25 15:37:26 24 805s 25 10.25 -1.75 2019-02-25 15:37:26 25 805s 26 10.75 -1.75 2019-02-25 15:37:26 26 805s 27 11.25 -1.75 2019-02-25 15:37:26 27 805s 28 11.75 -1.75 2019-02-25 15:37:26 28 805s 29 10.25 -2.45 2019-02-25 15:37:26 29 805s 30 10.75 -2.45 2019-02-25 15:37:26 30 805s 31 11.25 -2.45 2019-02-25 15:37:26 31 805s 32 11.75 -2.45 2019-02-25 15:37:26 32 805s 33 10.25 -0.35 2019-02-25 15:37:27 33 805s 34 10.75 -0.35 2019-02-25 15:37:27 34 805s 35 11.25 -0.35 2019-02-25 15:37:27 35 805s 36 11.75 -0.35 2019-02-25 15:37:27 36 805s 37 10.25 -1.05 2019-02-25 15:37:27 37 805s 38 10.75 -1.05 2019-02-25 15:37:27 38 805s 39 11.25 -1.05 2019-02-25 15:37:27 39 805s 40 11.75 -1.05 2019-02-25 15:37:27 40 805s 41 10.25 -1.75 2019-02-25 15:37:27 41 805s 42 10.75 -1.75 2019-02-25 15:37:27 42 805s 43 11.25 -1.75 2019-02-25 15:37:27 43 805s 44 11.75 -1.75 2019-02-25 15:37:27 44 805s 45 10.25 -2.45 2019-02-25 15:37:27 45 805s 46 10.75 -2.45 2019-02-25 15:37:27 46 805s 47 11.25 -2.45 2019-02-25 15:37:27 47 805s 48 11.75 -2.45 2019-02-25 15:37:27 48 805s 49 10.25 -0.35 2019-02-25 15:37:28 49 805s 50 10.75 -0.35 2019-02-25 15:37:28 50 805s 51 11.25 -0.35 2019-02-25 15:37:28 51 805s 52 11.75 -0.35 2019-02-25 15:37:28 52 805s 53 10.25 -1.05 2019-02-25 15:37:28 53 805s 54 10.75 -1.05 2019-02-25 15:37:28 54 805s 55 11.25 -1.05 2019-02-25 15:37:28 55 805s 56 11.75 -1.05 2019-02-25 15:37:28 56 805s 57 10.25 -1.75 2019-02-25 15:37:28 57 805s 58 10.75 -1.75 2019-02-25 15:37:28 58 805s 59 11.25 -1.75 2019-02-25 15:37:28 59 805s 60 11.75 -1.75 2019-02-25 15:37:28 60 805s 61 10.25 -2.45 2019-02-25 15:37:28 61 805s 62 10.75 -2.45 2019-02-25 15:37:28 62 805s 63 11.25 -2.45 2019-02-25 15:37:28 63 805s 64 11.75 -2.45 2019-02-25 15:37:28 64 805s > plot(s, col = sf.colors(), axes = TRUE) 805s > (s.stfdf = as(s, "STFDF")) 805s An object of class "STFDF" 805s Slot "data": 805s foo 805s 1 1 805s 2 2 805s 3 3 805s 4 4 805s 5 5 805s 6 6 805s 7 7 805s 8 8 805s 9 9 805s 10 10 805s 11 11 805s 12 12 805s 13 13 805s 14 14 805s 15 15 805s 16 16 805s 17 17 805s 18 18 805s 19 19 805s 20 20 805s 21 21 805s 22 22 805s 23 23 805s 24 24 805s 25 25 805s 26 26 805s 27 27 805s 28 28 805s 29 29 805s 30 30 805s 31 31 805s 32 32 805s 33 33 805s 34 34 805s 35 35 805s 36 36 805s 37 37 805s 38 38 805s 39 39 805s 40 40 805s 41 41 805s 42 42 805s 43 43 805s 44 44 805s 45 45 805s 46 46 805s 47 47 805s 48 48 805s 49 49 805s 50 50 805s 51 51 805s 52 52 805s 53 53 805s 54 54 805s 55 55 805s 56 56 805s 57 57 805s 58 58 805s 59 59 805s 60 60 805s 61 61 805s 62 62 805s 63 63 805s 64 64 805s 805s Slot "sp": 805s Object of class SpatialPixels 805s Grid topology: 805s cellcentre.offset cellsize cells.dim 805s x 10.25 0.5 4 805s y -2.45 0.7 4 805s SpatialPoints: 805s x y 805s [1,] 10.25 -0.35 805s [2,] 10.75 -0.35 805s [3,] 11.25 -0.35 805s [4,] 11.75 -0.35 805s [5,] 10.25 -1.05 805s [6,] 10.75 -1.05 805s [7,] 11.25 -1.05 805s [8,] 11.75 -1.05 805s [9,] 10.25 -1.75 805s [10,] 10.75 -1.75 805s [11,] 11.25 -1.75 805s [12,] 11.75 -1.75 805s [13,] 10.25 -2.45 805s [14,] 10.75 -2.45 805s [15,] 11.25 -2.45 805s [16,] 11.75 -2.45 805s Coordinate Reference System (CRS) arguments: NA 805s 805s Slot "time": 805s timeIndex 805s 2019-02-25 15:37:25 1 805s 2019-02-25 15:37:26 2 805s 2019-02-25 15:37:27 3 805s 2019-02-25 15:37:28 4 805s 805s Slot "endTime": 805s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 805s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 805s 805s > stplot(s.stfdf, scales = list(draw = TRUE)) 806s > 806s > (s2 = st_as_stars(s.stfdf)) 806s stars object with 3 dimensions and 1 attribute 806s attribute(s): 806s Min. 1st Qu. Median Mean 3rd Qu. Max. 806s foo 1 16.75 32.5 32.5 48.25 64 806s dimension(s): 806s from to offset delta refsys x/y 806s x 1 4 10 0.5 NA [x] 806s y 1 4 -1.11e-16 -0.7 NA [y] 806s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 806s > plot(s2, col = sf.colors(), axes = TRUE) 806s > all.equal(s, s2, check.attributes = FALSE) 806s [1] TRUE 806s > 806s > # multiple simulations: 806s > data(meuse, package = "sp") 806s > data(meuse.grid, package = "sp") 806s > coordinates(meuse.grid) <- ~x+y 806s > gridded(meuse.grid) <- TRUE 806s > meuse.grid = st_as_stars(meuse.grid) 806s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 806s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 806s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 806s > set.seed(123) 806s > ## IGNORE_RDIFF_BEGIN 806s > (p = predict(g, meuse.grid, nsim = 5)) 806s drawing 5 multivariate GLS realisations of beta... 806s [using conditional Gaussian simulation] 806s stars object with 3 dimensions and 2 attributes 806s attribute(s): 806s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 806s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 806s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 806s dimension(s): 806s from to offset delta values x/y 806s x 1 78 178440 40 NULL [x] 806s y 1 104 333760 -40 NULL [y] 806s sample 1 5 NA NA sim1,...,sim5 806s > ## IGNORE_RDIFF_END 806s > 806s BEGIN TEST unproj.R 806s 806s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 806s Copyright (C) 2025 The R Foundation for Statistical Computing 806s Platform: arm-unknown-linux-gnueabihf (32-bit) 806s 806s R is free software and comes with ABSOLUTELY NO WARRANTY. 806s You are welcome to redistribute it under certain conditions. 806s Type 'license()' or 'licence()' for distribution details. 806s 806s R is a collaborative project with many contributors. 806s Type 'contributors()' for more information and 806s 'citation()' on how to cite R or R packages in publications. 806s 806s Type 'demo()' for some demos, 'help()' for on-line help, or 806s 'help.start()' for an HTML browser interface to help. 806s Type 'q()' to quit R. 806s 806s > # DOI 10.1007/s11004-011-9344-7 806s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 806s > 806s > suppressPackageStartupMessages(library(sp)) 807s > library(gstat) 807s > 807s > if (require(sp, quietly = TRUE) && 807s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 807s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 807s + data(meuse) 807s + coordinates(meuse) = ~x+y 807s + proj4string(meuse) = CRS("+init=epsg:28992") 807s + ll = "+proj=longlat +ellps=WGS84" 807s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 807s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 807s + meuse.ll[1:10,] 807s + variogram(log(zinc)~1, meuse.ll) 807s + 807s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 807s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 807s + 807s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 807s + abline(0,1) 807s + 807s + data(ozone2) 807s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 807s + data.frame(t(ozone2$y)), 807s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 807s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 807s + utm16 = "+proj=utm +zone=16" 807s + # oz.utm = spTransform(oz, utm16) 807s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 807s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 807s + 807s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 807s + 807s + foo <- 807s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 807s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 807s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 807s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 807s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 807s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 807s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 807s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 807s + -11L), class = "data.frame") 807s + 807s + coordinates(foo) <- ~lon+lat 807s + 807s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 807s + 807s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 807s + 807s + cat('==========\nvariogram:\n') 807s + print(head(vg.foo)) 807s + 807s + cat('==========\nspDistsN1 Distances:\n') 807s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 807s + } 809s ========== 809s variogram: 809s dist gamma dir.hor dir.ver id left right 809s 1 3115.1190 8.971063e-04 0 0 var1 2 1 809s 2 1908.0468 1.909846e+01 0 0 var1 3 1 809s 3 1405.6211 1.883757e+01 0 0 var1 3 2 809s 4 1837.5667 1.347749e+01 0 0 var1 4 1 809s 5 1522.8765 1.325847e+01 0 0 var1 4 2 809s 6 119.9386 4.886139e-01 0 0 var1 4 3 809s ========== 809s spDistsN1 Distances: 809s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 809s [8] 3081.7541 4090.4022 665.9348 2683.1516 809s > 809s Warning message: 809s In CPL_crs_from_input(x) : 809s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 809s BEGIN TEST variogram.R 809s 809s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 809s Copyright (C) 2025 The R Foundation for Statistical Computing 809s Platform: arm-unknown-linux-gnueabihf (32-bit) 809s 809s R is free software and comes with ABSOLUTELY NO WARRANTY. 809s You are welcome to redistribute it under certain conditions. 809s Type 'license()' or 'licence()' for distribution details. 809s 809s R is a collaborative project with many contributors. 809s Type 'contributors()' for more information and 809s 'citation()' on how to cite R or R packages in publications. 809s 809s Type 'demo()' for some demos, 'help()' for on-line help, or 809s 'help.start()' for an HTML browser interface to help. 809s Type 'q()' to quit R. 809s 810s > library(sp) 810s > library(gstat) 811s > data(meuse) 811s > variogram(log(zinc)~1, ~x+y, meuse) 811s np dist gamma dir.hor dir.ver id 811s 1 57 79.29244 0.1234479 0 0 var1 811s 2 299 163.97367 0.2162185 0 0 var1 811s 3 419 267.36483 0.3027859 0 0 var1 811s 4 457 372.73542 0.4121448 0 0 var1 811s 5 547 478.47670 0.4634128 0 0 var1 811s 6 533 585.34058 0.5646933 0 0 var1 811s 7 574 693.14526 0.5689683 0 0 var1 811s 8 564 796.18365 0.6186769 0 0 var1 811s 9 589 903.14650 0.6471479 0 0 var1 811s 10 543 1011.29177 0.6915705 0 0 var1 811s 11 500 1117.86235 0.7033984 0 0 var1 811s 12 477 1221.32810 0.6038770 0 0 var1 811s 13 452 1329.16407 0.6517158 0 0 var1 811s 14 457 1437.25620 0.5665318 0 0 var1 811s 15 415 1543.20248 0.5748227 0 0 var1 811s > 811s > coordinates(meuse) <- ~ x + y 811s > variogram(log(zinc)~1, meuse) 811s np dist gamma dir.hor dir.ver id 811s 1 57 79.29244 0.1234479 0 0 var1 811s 2 299 163.97367 0.2162185 0 0 var1 811s 3 419 267.36483 0.3027859 0 0 var1 811s 4 457 372.73542 0.4121448 0 0 var1 811s 5 547 478.47670 0.4634128 0 0 var1 811s 6 533 585.34058 0.5646933 0 0 var1 811s 7 574 693.14526 0.5689683 0 0 var1 811s 8 564 796.18365 0.6186769 0 0 var1 811s 9 589 903.14650 0.6471479 0 0 var1 811s 10 543 1011.29177 0.6915705 0 0 var1 811s 11 500 1117.86235 0.7033984 0 0 var1 811s 12 477 1221.32810 0.6038770 0 0 var1 811s 13 452 1329.16407 0.6517158 0 0 var1 811s 14 457 1437.25620 0.5665318 0 0 var1 811s 15 415 1543.20248 0.5748227 0 0 var1 811s > 811s > ind=seq(1,155,2) 811s > var1= meuse[ind,] 811s > var2= meuse[-ind,] 811s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 811s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 811s > v.cross <- variogram(g) 811s > plot(v.cross) 811s > 811s > 811s BEGIN TEST vdist.R 811s 811s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 811s Copyright (C) 2025 The R Foundation for Statistical Computing 811s Platform: arm-unknown-linux-gnueabihf (32-bit) 811s 811s R is free software and comes with ABSOLUTELY NO WARRANTY. 811s You are welcome to redistribute it under certain conditions. 811s Type 'license()' or 'licence()' for distribution details. 811s 811s R is a collaborative project with many contributors. 811s Type 'contributors()' for more information and 811s 'citation()' on how to cite R or R packages in publications. 811s 811s Type 'demo()' for some demos, 'help()' for on-line help, or 811s 'help.start()' for an HTML browser interface to help. 811s Type 'q()' to quit R. 811s 811s > library(sp) 811s > library(gstat) 812s > 812s > data(meuse) 812s > coordinates(meuse) = ~x+y 812s > data(meuse.grid) 812s > gridded(meuse.grid) = ~x+y 812s > 812s > mg = meuse.grid 812s > gridded(mg) = FALSE 812s > mg= mg[1500,] 812s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 812s + vdist=FALSE, maxdist=1000, nmax = 9) 812s [using ordinary kriging] 812s coordinates var1.pred var1.var 812s 1500 (180260, 331300) 5.024413 1.114475 812s > 812s > ## IGNORE_RDIFF_BEGIN 812s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 812s + vdist=TRUE, maxdist=1000, nmax = 9) 812s [using ordinary kriging] 812s coordinates var1.pred var1.var 812s 1500 (180260, 331300) 5.568531 1.112945 812s > ## IGNORE_RDIFF_END 812s > 813s autopkgtest [23:58:02]: test run-unit-test: -----------------------] 819s autopkgtest [23:58:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 819s run-unit-test PASS 824s autopkgtest [23:58:13]: test pkg-r-autopkgtest: preparing testbed 825s Reading package lists... 826s Building dependency tree... 826s Reading state information... 826s Solving dependencies... 827s The following NEW packages will be installed: 827s build-essential cpp cpp-15 cpp-15-arm-linux-gnueabihf 827s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-15 g++-15-arm-linux-gnueabihf 827s g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf 827s gcc-arm-linux-gnueabihf gfortran gfortran-15 gfortran-15-arm-linux-gnueabihf 827s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 827s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-15-dev 827s libgfortran-15-dev 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gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1058s Selecting previously unselected package gfortran-15. 1058s Preparing to unpack .../28-gfortran-15_15.2.0-12ubuntu1_armhf.deb ... 1058s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 1058s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 1058s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 1058s Unpacking gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1058s Selecting previously unselected package gfortran. 1058s Preparing to unpack .../30-gfortran_4%3a15.2.0-4ubuntu1_armhf.deb ... 1058s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 1058s Selecting previously unselected package icu-devtools. 1058s Preparing to unpack .../31-icu-devtools_78.2-1ubuntu1_armhf.deb ... 1058s Unpacking icu-devtools (78.2-1ubuntu1) ... 1058s Selecting previously unselected package libblas-dev:armhf. 1058s Preparing to unpack .../32-libblas-dev_3.12.1-7ubuntu1_armhf.deb ... 1058s 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previously unselected package libreadline-dev:armhf. 1060s Preparing to unpack .../48-libreadline-dev_8.3-3_armhf.deb ... 1060s Unpacking libreadline-dev:armhf (8.3-3) ... 1060s Selecting previously unselected package libzstd-dev:armhf. 1060s Preparing to unpack .../49-libzstd-dev_1.5.7+dfsg-3_armhf.deb ... 1060s Unpacking libzstd-dev:armhf (1.5.7+dfsg-3) ... 1060s Selecting previously unselected package liblzma-dev:armhf. 1060s Preparing to unpack .../50-liblzma-dev_5.8.2-2_armhf.deb ... 1060s Unpacking liblzma-dev:armhf (5.8.2-2) ... 1060s Selecting previously unselected package pkgconf-bin. 1060s Preparing to unpack .../51-pkgconf-bin_1.8.1-4build1_armhf.deb ... 1060s Unpacking pkgconf-bin (1.8.1-4build1) ... 1060s Selecting previously unselected package pkgconf:armhf. 1060s Preparing to unpack .../52-pkgconf_1.8.1-4build1_armhf.deb ... 1060s Unpacking pkgconf:armhf (1.8.1-4build1) ... 1060s Selecting previously unselected package libtirpc-dev:armhf. 1060s Preparing to unpack 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libicu-dev:armhf (78.2-1ubuntu1) ... 1061s Setting up libbz2-dev:armhf (1.0.8-6build2) ... 1061s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1061s Setting up libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 1061s Setting up libncurses-dev:armhf (6.6+20251231-1) ... 1061s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1062s Setting up libpcre2-dev:armhf (10.46-1) ... 1062s Setting up libreadline-dev:armhf (8.3-3) ... 1062s Setting up gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1062s Setting up gcc-15 (15.2.0-12ubuntu1) ... 1062s Setting up libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 1062s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 1062s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1062s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 1062s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 1062s Setting up libpng-dev:armhf (1.6.54-1) ... 1062s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 1062s Setting up g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1062s Setting up gcc (4:15.2.0-4ubuntu1) ... 1062s Setting up g++-15 (15.2.0-12ubuntu1) ... 1062s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1062s Setting up gfortran (4:15.2.0-4ubuntu1) ... 1062s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1062s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1062s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1062s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1062s Setting up g++ (4:15.2.0-4ubuntu1) ... 1062s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1062s Setting up build-essential (12.12ubuntu2) ... 1062s Setting up r-base-dev (4.5.2-1ubuntu2) ... 1062s Setting up pkg-r-autopkgtest (20250812) ... 1062s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1062s Processing triggers for man-db (2.13.1-1build1) ... 1063s Processing triggers for install-info (7.2-5) ... 1071s autopkgtest [00:02:20]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1071s autopkgtest [00:02:20]: test pkg-r-autopkgtest: [----------------------- 1073s Test: Try to load the R library gstat 1073s 1073s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1073s Copyright (C) 2025 The R Foundation for Statistical Computing 1073s Platform: arm-unknown-linux-gnueabihf (32-bit) 1073s 1073s R is free software and comes with ABSOLUTELY NO WARRANTY. 1073s You are welcome to redistribute it under certain conditions. 1073s Type 'license()' or 'licence()' for distribution details. 1073s 1073s R is a collaborative project with many contributors. 1073s Type 'contributors()' for more information and 1073s 'citation()' on how to cite R or R packages in publications. 1073s 1073s Type 'demo()' for some demos, 'help()' for on-line help, or 1073s 'help.start()' for an HTML browser interface to help. 1073s Type 'q()' to quit R. 1073s 1073s > library('gstat') 1074s > 1074s autopkgtest [00:02:23]: test pkg-r-autopkgtest: -----------------------] 1079s autopkgtest [00:02:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1079s pkg-r-autopkgtest PASS 1083s autopkgtest [00:02:32]: @@@@@@@@@@@@@@@@@@@@ summary 1083s run-unit-test PASS 1083s pkg-r-autopkgtest PASS