0s autopkgtest [22:57:31]: starting date and time: 2026-02-09 22:57:31+0000 0s autopkgtest [22:57:31]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [22:57:31]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3s5wds_q/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/resolute/armhf 26s autopkgtest [22:57:57]: testbed dpkg architecture: armhf 27s autopkgtest [22:57:58]: testbed apt version: 3.1.15 31s autopkgtest [22:58:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [22:58:04]: testbed release detected to be: None 41s autopkgtest [22:58:12]: updating testbed package index (apt update) 42s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 44s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 44s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 44s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 48s Get:11 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 48s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 50s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 82s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 113s Fetched 43.5 MB in 1min 10s (620 kB/s) 114s Reading package lists... 119s autopkgtest [22:59:30]: upgrading testbed (apt dist-upgrade and autopurge) 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 122s The following packages will be upgraded: 122s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 122s libip6tc2 libxtables12 wget 122s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Need to get 2407 kB of archives. 122s After this operation, 152 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 123s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 123s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 123s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 123s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 125s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 126s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 126s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 127s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 127s Preconfiguring packages ... 127s Fetched 2407 kB in 5s (496 kB/s) 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 128s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 128s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 128s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 128s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 128s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 128s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 128s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 128s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 128s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 128s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 128s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 128s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 128s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 128s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 128s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 128s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 128s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 128s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 128s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 128s Setting up wget (1.25.0-2ubuntu4) ... 128s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 128s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 128s Setting up dracut-install (109-11ubuntu1) ... 128s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 128s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 128s Setting up iptables (1.8.11-2ubuntu3) ... 128s Setting up iproute2 (6.18.0-1ubuntu1) ... 129s Processing triggers for man-db (2.13.1-1build1) ... 130s Processing triggers for install-info (7.2-5) ... 130s Processing triggers for libc-bin (2.42-2ubuntu4) ... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Solving dependencies... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [22:59:46]: rebooting testbed after setup commands that affected boot 174s autopkgtest [23:00:25]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 199s autopkgtest [23:00:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 214s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 214s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 214s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 214s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 214s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 214s gpgv: issuer "tille@debian.org" 214s gpgv: Can't check signature: No public key 214s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 214s autopkgtest [23:01:05]: testing package r-cran-gstat version 2.1-3-2 216s autopkgtest [23:01:07]: build not needed 220s autopkgtest [23:01:11]: test run-unit-test: preparing testbed 222s Reading package lists... 223s Building dependency tree... 223s Reading state information... 223s Solving dependencies... 223s The following NEW packages will be installed: 223s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 223s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 223s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 223s libde265-0 libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 223s libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 223s libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 223s libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 223s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 libkmlbase1t64 223s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 223s libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 223s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 223s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 223s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 223s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 223s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 223s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 223s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 223s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 223s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi r-cran-farver 223s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 223s r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals 223s r-cran-isoband r-cran-kernsmooth r-cran-labeling r-cran-lattice 223s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 223s r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme 223s r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 223s r-cran-proxy r-cran-r6 r-cran-raster r-cran-rcolorbrewer r-cran-rcpp 223s r-cran-rlang r-cran-s2 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp 223s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-tibble 223s r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 223s r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils 223s zip 223s 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. 223s Need to get 169 MB of archives. 223s After this operation, 324 MB of additional disk space will be used. 223s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 224s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 225s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 226s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 227s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 227s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.17.1-3ubuntu1 [180 kB] 227s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-data all 3.12.1+dfsg-1 [278 kB] 228s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-plugins armhf 3.12.1+dfsg-1 [26.8 kB] 228s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libabsl20260107 armhf 20260107.0-1 [557 kB] 229s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.5-1 [20.8 kB] 229s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libaom3 armhf 3.13.1-2 [1258 kB] 231s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 231s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 232s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 235s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf libarpack2t64 armhf 3.9.1-6 [88.7 kB] 235s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf libsuperlu7 armhf 7.0.1+dfsg1-2 [157 kB] 235s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libarmadillo15 armhf 1:15.2.1+dfsg-2 [106 kB] 236s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf libdav1d7 armhf 1.5.3-1 [299 kB] 236s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf libgav1-2 armhf 0.20.0-2build1 [330 kB] 237s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu3 [129 kB] 237s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 237s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libyuv0 armhf 0.0.1922.20260106-1 [93.9 kB] 237s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf libavif16 armhf 1.3.0-1ubuntu3 [98.7 kB] 237s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libsnappy1v5 armhf 1.2.2-2 [28.6 kB] 237s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf libblosc1 armhf 1.21.5+ds-2 [23.7 kB] 237s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 238s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 238s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 238s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 238s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 238s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libcfitsio10t64 armhf 4.6.3-1 [505 kB] 239s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 239s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libde265-0 armhf 1.0.16-1build1 [159 kB] 240s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2build1 [38.8 kB] 240s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libfyba0t64 armhf 4.1.1-11build2 [110 kB] 240s Get:36 http://ftpmaster.internal/ubuntu resolute/universe armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1ubuntu2 [20.4 kB] 240s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf libfreexl1 armhf 2.0.0-1build3 [38.1 kB] 240s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos3.14.1 armhf 3.14.1-2 [993 kB] 242s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos-c1t64 armhf 3.14.1-2 [114 kB] 242s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf proj-data all 9.7.1-1 [7950 kB] 256s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 256s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 256s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 256s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 256s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 256s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf libproj25 armhf 9.7.1-1 [1365 kB] 259s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeotiff5 armhf 1.7.4-1build1 [53.0 kB] 259s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libgif7 armhf 5.2.2-1ubuntu3 [32.8 kB] 259s Get:49 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.5-1 [16.3 kB] 259s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf4-0 armhf 4.3.1-2 [254 kB] 259s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.6+repack-2 [1423 kB] 263s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-aomdec armhf 1.21.2-1 [13.0 kB] 263s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-libde265 armhf 1.21.2-1 [13.6 kB] 263s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libheif1 armhf 1.21.2-1 [597 kB] 264s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 264s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf libjxl0.11 armhf 0.11.1-6ubuntu1 [1108 kB] 266s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf liburiparser1 armhf 0.9.8+dfsg-2 [30.3 kB] 266s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlbase1t64 armhf 1.3.0-13 [42.4 kB] 266s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmldom1t64 armhf 1.3.0-13 [146 kB] 267s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlengine1t64 armhf 1.3.0-13 [70.6 kB] 267s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 267s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf libmuparser2v5 armhf 2.3.4-2 [139 kB] 267s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 267s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libmysqlclient24 armhf 8.4.8-0ubuntu1 [1266 kB] 269s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.6+repack-2 [58.9 kB] 269s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf libnetcdf22 armhf 1:4.9.3-1build1 [511 kB] 270s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-9 [40.4 kB] 270s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libodbc2 armhf 2.3.14-1 [147 kB] 270s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf unixodbc-common all 2.3.14-1 [8792 B] 270s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf libodbcinst2 armhf 2.3.14-1 [31.4 kB] 271s Get:71 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 271s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf libgpgmepp6t64 armhf 1.24.2-3ubuntu2 [115 kB] 271s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf libpoppler147 armhf 25.03.0-11.1 [1046 kB] 273s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf libpq5 armhf 18.1-2 [137 kB] 273s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 274s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf librttopo1 armhf 1.1.0-4build1 [161 kB] 274s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf libspatialite8t64 armhf 5.1.0-3ubuntu1 [2007 kB] 277s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3build2 [827 kB] 279s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf libgdal38 armhf 3.12.1+dfsg-1 [10.2 MB] 297s Get:80 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 297s Get:81 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 298s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 298s Get:83 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 298s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 298s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 298s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.57.0-1 [218 kB] 298s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.57.0-1 [45.2 kB] 299s Get:88 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.57.0-1 [25.3 kB] 299s Get:89 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 299s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 299s Get:91 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1build1 [15.3 kB] 299s Get:92 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 300s Get:93 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 300s Get:94 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 300s Get:95 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 302s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-data all 2.2.28-8 [19.3 kB] 302s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-0 armhf 2.2.28-8 [47.6 kB] 302s Get:98 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 302s Get:99 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu3 [164 kB] 303s Get:100 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 303s Get:101 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 303s Get:102 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 359s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-abind all 1.4-8-1build1 [67.0 kB] 359s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 361s Get:105 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-class armhf 7.3-23-1 [88.8 kB] 361s Get:106 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 362s Get:107 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-e1071 armhf 1.7-17-1 [570 kB] 363s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-kernsmooth armhf 2.23-26-1build1 [91.4 kB] 363s Get:109 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-classint armhf 0.4-11+dfsg-1 [108 kB] 363s Get:110 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 366s Get:111 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1build1 [91.1 kB] 366s Get:112 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dbi all 1.2.3-1build1 [855 kB] 368s Get:113 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-digest armhf 0.6.39-1 [211 kB] 368s Get:114 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dotcall64 armhf 1.2-1 [36.5 kB] 368s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 370s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 372s Get:117 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.22-1 [81.0 kB] 373s Get:118 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 373s Get:119 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 376s Get:120 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spam armhf 2.11-1-1 [2730 kB] 381s Get:121 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.3-1 [1088 kB] 384s Get:122 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-maps armhf 3.4.2.1-1 [2348 kB] 388s Get:123 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fields armhf 16.3.1-1 [3760 kB] 400s Get:124 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fnn armhf 1.1.4.1-1 [119 kB] 401s Get:125 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-globals all 0.19.0-1 [160 kB] 401s Get:126 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 402s Get:127 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-parallelly armhf 1.42.0-1 [540 kB] 403s Get:128 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future all 1.34.0+dfsg-1 [646 kB] 404s Get:129 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 405s Get:130 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 405s Get:131 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 408s Get:132 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 408s Get:133 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 409s Get:134 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 412s Get:135 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf r-cran-lattice armhf 0.22-9-1 [1399 kB] 415s Get:136 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nlme armhf 3.1.168-1 [2304 kB] 419s Get:137 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 427s Get:138 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mgcv armhf 1.9-4-1 [3515 kB] 435s Get:139 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 435s Get:140 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 436s Get:141 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 436s Get:142 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.4.0-1 [725 kB] 437s Get:143 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 438s Get:144 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 438s Get:145 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 441s Get:146 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 442s Get:147 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 442s Get:148 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 443s Get:149 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 443s Get:150 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 451s Get:151 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sp armhf 1:2.2-0+dfsg-1 [1441 kB] 454s Get:152 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-zoo armhf 1.8-15-1 [1025 kB] 456s Get:153 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-wk armhf 0.9.4-1 [1785 kB] 459s Get:154 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-s2 armhf 1.1.9-1build1 [1738 kB] 463s Get:155 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-units armhf 0.8-7+dfsg-2 [292 kB] 463s Get:156 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sf armhf 1.0-19+dfsg-2build2 [3265 kB] 469s Get:157 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sftime all 0.2-0-6 [168 kB] 470s Get:158 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xts armhf 0.14.1-1 [1181 kB] 472s Get:159 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-intervals armhf 0.15.5-1 [600 kB] 474s Get:160 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spacetime all 1.3-3-2 [2780 kB] 478s Get:161 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stars all 0.7-0-1 [4415 kB] 485s Get:162 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gstat armhf 2.1-3-2 [2321 kB] 488s Get:163 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mapdata armhf 2.3.1-1 [23.5 MB] 525s Get:164 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-terra armhf 1.8-70-1build2 [4176 kB] 531s Get:165 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-raster armhf 3.6-31-2 [3150 kB] 536s Preconfiguring packages ... 536s Fetched 169 MB in 5min 12s (541 kB/s) 536s Selecting previously unselected package libfreetype6:armhf. 536s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68686 files and directories currently installed.) 536s Preparing to unpack .../000-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 536s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 536s Selecting previously unselected package fonts-dejavu-mono. 536s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8build1_all.deb ... 536s Unpacking fonts-dejavu-mono (2.37-8build1) ... 536s Selecting previously unselected package fonts-dejavu-core. 536s Preparing to unpack .../002-fonts-dejavu-core_2.37-8build1_all.deb ... 536s Unpacking fonts-dejavu-core (2.37-8build1) ... 536s Selecting previously unselected package fontconfig-config. 536s Preparing to unpack .../003-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 537s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 537s Selecting previously unselected package libfontconfig1:armhf. 537s Preparing to unpack .../004-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 537s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 537s Selecting previously unselected package fontconfig. 537s Preparing to unpack .../005-fontconfig_2.17.1-3ubuntu1_armhf.deb ... 537s Unpacking fontconfig (2.17.1-3ubuntu1) ... 537s Selecting previously unselected package gdal-data. 537s Preparing to unpack .../006-gdal-data_3.12.1+dfsg-1_all.deb ... 537s Unpacking gdal-data (3.12.1+dfsg-1) ... 537s Selecting previously unselected package gdal-plugins:armhf. 537s Preparing to unpack .../007-gdal-plugins_3.12.1+dfsg-1_armhf.deb ... 537s Unpacking gdal-plugins:armhf (3.12.1+dfsg-1) ... 537s Selecting previously unselected package libabsl20260107:armhf. 537s Preparing to unpack .../008-libabsl20260107_20260107.0-1_armhf.deb ... 537s Unpacking libabsl20260107:armhf (20260107.0-1) ... 537s Selecting previously unselected package libaec0:armhf. 537s Preparing to unpack .../009-libaec0_1.1.5-1_armhf.deb ... 537s Unpacking libaec0:armhf (1.1.5-1) ... 537s Selecting previously unselected package libaom3:armhf. 537s Preparing to unpack .../010-libaom3_3.13.1-2_armhf.deb ... 537s Unpacking libaom3:armhf (3.13.1-2) ... 537s Selecting previously unselected package libblas3:armhf. 537s Preparing to unpack .../011-libblas3_3.12.1-7ubuntu1_armhf.deb ... 537s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 537s Selecting previously unselected package libgfortran5:armhf. 537s Preparing to unpack .../012-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 537s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 537s Selecting previously unselected package liblapack3:armhf. 537s Preparing to unpack .../013-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 537s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 537s Selecting previously unselected package libarpack2t64:armhf. 537s Preparing to unpack .../014-libarpack2t64_3.9.1-6_armhf.deb ... 537s Unpacking libarpack2t64:armhf (3.9.1-6) ... 537s Selecting previously unselected package libsuperlu7:armhf. 537s Preparing to unpack .../015-libsuperlu7_7.0.1+dfsg1-2_armhf.deb ... 537s Unpacking libsuperlu7:armhf (7.0.1+dfsg1-2) ... 537s Selecting previously unselected package libarmadillo15. 537s Preparing to unpack .../016-libarmadillo15_1%3a15.2.1+dfsg-2_armhf.deb ... 537s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 537s Selecting previously unselected package libdav1d7:armhf. 537s Preparing to unpack .../017-libdav1d7_1.5.3-1_armhf.deb ... 537s Unpacking libdav1d7:armhf (1.5.3-1) ... 537s Selecting previously unselected package libgav1-2:armhf. 537s Preparing to unpack .../018-libgav1-2_0.20.0-2build1_armhf.deb ... 537s Unpacking libgav1-2:armhf (0.20.0-2build1) ... 537s Selecting previously unselected package libjpeg-turbo8:armhf. 537s Preparing to unpack .../019-libjpeg-turbo8_2.1.5-4ubuntu3_armhf.deb ... 537s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 537s Selecting previously unselected package libjpeg8:armhf. 537s Preparing to unpack .../020-libjpeg8_8c-2ubuntu11_armhf.deb ... 537s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 537s Selecting previously unselected package libyuv0:armhf. 537s Preparing to unpack .../021-libyuv0_0.0.1922.20260106-1_armhf.deb ... 537s Unpacking libyuv0:armhf (0.0.1922.20260106-1) ... 537s Selecting previously unselected package libavif16:armhf. 537s Preparing to unpack .../022-libavif16_1.3.0-1ubuntu3_armhf.deb ... 537s Unpacking libavif16:armhf (1.3.0-1ubuntu3) ... 537s Selecting previously unselected package libsnappy1v5:armhf. 537s Preparing to unpack .../023-libsnappy1v5_1.2.2-2_armhf.deb ... 537s Unpacking libsnappy1v5:armhf (1.2.2-2) ... 537s Selecting previously unselected package libblosc1:armhf. 537s Preparing to unpack .../024-libblosc1_1.21.5+ds-2_armhf.deb ... 537s Unpacking libblosc1:armhf (1.21.5+ds-2) ... 537s Selecting previously unselected package libpixman-1-0:armhf. 538s Preparing to unpack .../025-libpixman-1-0_0.46.4-1_armhf.deb ... 538s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 538s Selecting previously unselected package libxcb-render0:armhf. 538s Preparing to unpack .../026-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 538s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 538s Selecting previously unselected package libxcb-shm0:armhf. 538s Preparing to unpack .../027-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 538s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 538s Selecting previously unselected package libxrender1:armhf. 538s Preparing to unpack .../028-libxrender1_1%3a0.9.12-1_armhf.deb ... 538s Unpacking libxrender1:armhf (1:0.9.12-1) ... 538s Selecting previously unselected package libcairo2:armhf. 538s Preparing to unpack .../029-libcairo2_1.18.4-3_armhf.deb ... 538s Unpacking libcairo2:armhf (1.18.4-3) ... 538s Selecting previously unselected package libcfitsio10t64:armhf. 538s Preparing to unpack .../030-libcfitsio10t64_4.6.3-1_armhf.deb ... 538s Unpacking libcfitsio10t64:armhf (4.6.3-1) ... 538s Selecting previously unselected package libdatrie1:armhf. 538s Preparing to unpack .../031-libdatrie1_0.2.14-1_armhf.deb ... 538s Unpacking libdatrie1:armhf (0.2.14-1) ... 538s Selecting previously unselected package libde265-0:armhf. 538s Preparing to unpack .../032-libde265-0_1.0.16-1build1_armhf.deb ... 538s Unpacking libde265-0:armhf (1.0.16-1build1) ... 538s Selecting previously unselected package libdeflate0:armhf. 538s Preparing to unpack .../033-libdeflate0_1.23-2build1_armhf.deb ... 538s Unpacking libdeflate0:armhf (1.23-2build1) ... 538s Selecting previously unselected package libfyba0t64:armhf. 538s Preparing to unpack .../034-libfyba0t64_4.1.1-11build2_armhf.deb ... 538s Unpacking libfyba0t64:armhf (4.1.1-11build2) ... 538s Selecting previously unselected package libminizip1t64:armhf. 538s Preparing to unpack .../035-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 538s Unpacking libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 538s Selecting previously unselected package libfreexl1:armhf. 538s Preparing to unpack .../036-libfreexl1_2.0.0-1build3_armhf.deb ... 538s Unpacking libfreexl1:armhf (2.0.0-1build3) ... 538s Selecting previously unselected package libgeos3.14.1:armhf. 538s Preparing to unpack .../037-libgeos3.14.1_3.14.1-2_armhf.deb ... 538s Unpacking libgeos3.14.1:armhf (3.14.1-2) ... 538s Selecting previously unselected package libgeos-c1t64:armhf. 538s Preparing to unpack .../038-libgeos-c1t64_3.14.1-2_armhf.deb ... 538s Unpacking libgeos-c1t64:armhf (3.14.1-2) ... 538s Selecting previously unselected package proj-data. 538s Preparing to unpack .../039-proj-data_9.7.1-1_all.deb ... 538s Unpacking proj-data (9.7.1-1) ... 538s Selecting previously unselected package libjbig0:armhf. 538s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 538s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 538s Selecting previously unselected package liblerc4:armhf. 538s Preparing to unpack .../041-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 538s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 538s Selecting previously unselected package libsharpyuv0:armhf. 538s Preparing to unpack .../042-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 538s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 538s Selecting previously unselected package libwebp7:armhf. 538s Preparing to unpack .../043-libwebp7_1.5.0-0.1build1_armhf.deb ... 538s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 538s Selecting previously unselected package libtiff6:armhf. 538s Preparing to unpack .../044-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 538s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 538s Selecting previously unselected package libproj25:armhf. 538s Preparing to unpack .../045-libproj25_9.7.1-1_armhf.deb ... 538s Unpacking libproj25:armhf (9.7.1-1) ... 538s Selecting previously unselected package libgeotiff5:armhf. 538s Preparing to unpack .../046-libgeotiff5_1.7.4-1build1_armhf.deb ... 538s Unpacking libgeotiff5:armhf (1.7.4-1build1) ... 539s Selecting previously unselected package libgif7:armhf. 539s Preparing to unpack .../047-libgif7_5.2.2-1ubuntu3_armhf.deb ... 539s Unpacking libgif7:armhf (5.2.2-1ubuntu3) ... 539s Selecting previously unselected package libsz2:armhf. 539s Preparing to unpack .../048-libsz2_1.1.5-1_armhf.deb ... 539s Unpacking libsz2:armhf (1.1.5-1) ... 539s Selecting previously unselected package libhdf4-0:armhf. 539s Preparing to unpack .../049-libhdf4-0_4.3.1-2_armhf.deb ... 539s Unpacking libhdf4-0:armhf (4.3.1-2) ... 539s Selecting previously unselected package libhdf5-310:armhf. 539s Preparing to unpack .../050-libhdf5-310_1.14.6+repack-2_armhf.deb ... 539s Unpacking libhdf5-310:armhf (1.14.6+repack-2) ... 539s Selecting previously unselected package libheif-plugin-aomdec:armhf. 539s Preparing to unpack .../051-libheif-plugin-aomdec_1.21.2-1_armhf.deb ... 539s Unpacking libheif-plugin-aomdec:armhf (1.21.2-1) ... 539s Selecting previously unselected package libheif-plugin-libde265:armhf. 539s Preparing to unpack .../052-libheif-plugin-libde265_1.21.2-1_armhf.deb ... 539s Unpacking libheif-plugin-libde265:armhf (1.21.2-1) ... 539s Selecting previously unselected package libheif1:armhf. 539s Preparing to unpack .../053-libheif1_1.21.2-1_armhf.deb ... 539s Unpacking libheif1:armhf (1.21.2-1) ... 539s Selecting previously unselected package liblcms2-2:armhf. 539s Preparing to unpack .../054-liblcms2-2_2.17-1_armhf.deb ... 539s Unpacking liblcms2-2:armhf (2.17-1) ... 539s Selecting previously unselected package libjxl0.11:armhf. 539s Preparing to unpack .../055-libjxl0.11_0.11.1-6ubuntu1_armhf.deb ... 539s Unpacking libjxl0.11:armhf (0.11.1-6ubuntu1) ... 539s Selecting previously unselected package liburiparser1:armhf. 539s Preparing to unpack .../056-liburiparser1_0.9.8+dfsg-2_armhf.deb ... 539s Unpacking liburiparser1:armhf (0.9.8+dfsg-2) ... 539s Selecting previously unselected package libkmlbase1t64:armhf. 539s Preparing to unpack .../057-libkmlbase1t64_1.3.0-13_armhf.deb ... 539s Unpacking libkmlbase1t64:armhf (1.3.0-13) ... 539s Selecting previously unselected package libkmldom1t64:armhf. 539s Preparing to unpack .../058-libkmldom1t64_1.3.0-13_armhf.deb ... 539s Unpacking libkmldom1t64:armhf (1.3.0-13) ... 539s Selecting previously unselected package libkmlengine1t64:armhf. 539s Preparing to unpack .../059-libkmlengine1t64_1.3.0-13_armhf.deb ... 539s Unpacking libkmlengine1t64:armhf (1.3.0-13) ... 539s Selecting previously unselected package libgomp1:armhf. 539s Preparing to unpack .../060-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 539s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 539s Selecting previously unselected package libmuparser2v5:armhf. 539s Preparing to unpack .../061-libmuparser2v5_2.3.4-2_armhf.deb ... 539s Unpacking libmuparser2v5:armhf (2.3.4-2) ... 539s Selecting previously unselected package mysql-common. 539s Preparing to unpack .../062-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 539s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 539s Selecting previously unselected package libmysqlclient24:armhf. 539s Preparing to unpack .../063-libmysqlclient24_8.4.8-0ubuntu1_armhf.deb ... 539s Unpacking libmysqlclient24:armhf (8.4.8-0ubuntu1) ... 539s Selecting previously unselected package libhdf5-hl-310:armhf. 539s Preparing to unpack .../064-libhdf5-hl-310_1.14.6+repack-2_armhf.deb ... 539s Unpacking libhdf5-hl-310:armhf (1.14.6+repack-2) ... 539s Selecting previously unselected package libnetcdf22:armhf. 539s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_armhf.deb ... 539s Unpacking libnetcdf22:armhf (1:4.9.3-1build1) ... 539s Selecting previously unselected package libltdl7:armhf. 539s Preparing to unpack .../066-libltdl7_2.5.4-9_armhf.deb ... 539s Unpacking libltdl7:armhf (2.5.4-9) ... 539s Selecting previously unselected package libodbc2:armhf. 539s Preparing to unpack .../067-libodbc2_2.3.14-1_armhf.deb ... 539s Unpacking libodbc2:armhf (2.3.14-1) ... 539s Selecting previously unselected package unixodbc-common. 539s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 539s Unpacking unixodbc-common (2.3.14-1) ... 539s Selecting previously unselected package libodbcinst2:armhf. 539s Preparing to unpack .../069-libodbcinst2_2.3.14-1_armhf.deb ... 539s Unpacking libodbcinst2:armhf (2.3.14-1) ... 540s Selecting previously unselected package libopenjp2-7:armhf. 540s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_armhf.deb ... 540s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 540s Selecting previously unselected package libgpgmepp6t64:armhf. 540s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_armhf.deb ... 540s Unpacking libgpgmepp6t64:armhf (1.24.2-3ubuntu2) ... 540s Selecting previously unselected package libpoppler147:armhf. 540s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_armhf.deb ... 540s Unpacking libpoppler147:armhf (25.03.0-11.1) ... 540s Selecting previously unselected package libpq5:armhf. 540s Preparing to unpack .../073-libpq5_18.1-2_armhf.deb ... 540s Unpacking libpq5:armhf (18.1-2) ... 540s Selecting previously unselected package libqhull-r8.0:armhf. 540s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_armhf.deb ... 540s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 540s Selecting previously unselected package librttopo1:armhf. 540s Preparing to unpack .../075-librttopo1_1.1.0-4build1_armhf.deb ... 540s Unpacking librttopo1:armhf (1.1.0-4build1) ... 540s Selecting previously unselected package libspatialite8t64:armhf. 540s Preparing to unpack .../076-libspatialite8t64_5.1.0-3ubuntu1_armhf.deb ... 540s Unpacking libspatialite8t64:armhf (5.1.0-3ubuntu1) ... 540s Selecting previously unselected package libxerces-c3.2t64:armhf. 540s Preparing to unpack .../077-libxerces-c3.2t64_3.2.4+debian-1.3build2_armhf.deb ... 540s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3build2) ... 540s Selecting previously unselected package libgdal38:armhf. 540s Preparing to unpack .../078-libgdal38_3.12.1+dfsg-1_armhf.deb ... 540s Unpacking libgdal38:armhf (3.12.1+dfsg-1) ... 540s Selecting previously unselected package libgraphite2-3:armhf. 540s Preparing to unpack .../079-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 540s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 540s Selecting previously unselected package libharfbuzz0b:armhf. 540s Preparing to unpack .../080-libharfbuzz0b_12.3.2-1_armhf.deb ... 540s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 540s Selecting previously unselected package x11-common. 540s Preparing to unpack .../081-x11-common_1%3a7.7+24ubuntu1_all.deb ... 540s Unpacking x11-common (1:7.7+24ubuntu1) ... 540s Selecting previously unselected package libice6:armhf. 540s Preparing to unpack .../082-libice6_2%3a1.1.1-1build1_armhf.deb ... 540s Unpacking libice6:armhf (2:1.1.1-1build1) ... 540s Selecting previously unselected package libthai-data. 540s Preparing to unpack .../083-libthai-data_0.1.30-1_all.deb ... 540s Unpacking libthai-data (0.1.30-1) ... 540s Selecting previously unselected package libthai0:armhf. 540s Preparing to unpack .../084-libthai0_0.1.30-1_armhf.deb ... 540s Unpacking libthai0:armhf (0.1.30-1) ... 540s Selecting previously unselected package libpango-1.0-0:armhf. 540s Preparing to unpack .../085-libpango-1.0-0_1.57.0-1_armhf.deb ... 540s Unpacking libpango-1.0-0:armhf (1.57.0-1) ... 540s Selecting previously unselected package libpangoft2-1.0-0:armhf. 540s Preparing to unpack .../086-libpangoft2-1.0-0_1.57.0-1_armhf.deb ... 540s Unpacking libpangoft2-1.0-0:armhf (1.57.0-1) ... 540s Selecting previously unselected package libpangocairo-1.0-0:armhf. 540s Preparing to unpack .../087-libpangocairo-1.0-0_1.57.0-1_armhf.deb ... 540s Unpacking libpangocairo-1.0-0:armhf (1.57.0-1) ... 540s Selecting previously unselected package libpaper2:armhf. 540s Preparing to unpack .../088-libpaper2_2.2.5-0.3build1_armhf.deb ... 540s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 540s Selecting previously unselected package libpaper-utils. 540s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 540s Unpacking libpaper-utils (2.2.5-0.3build1) ... 541s Selecting previously unselected package libsm6:armhf. 541s Preparing to unpack .../090-libsm6_2%3a1.2.6-1build1_armhf.deb ... 541s Unpacking libsm6:armhf (2:1.2.6-1build1) ... 541s Selecting previously unselected package libtcl8.6:armhf. 541s Preparing to unpack .../091-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 541s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 541s Selecting previously unselected package libxft2:armhf. 541s Preparing to unpack .../092-libxft2_2.3.6-1build2_armhf.deb ... 541s Unpacking libxft2:armhf (2.3.6-1build2) ... 541s Selecting previously unselected package libxss1:armhf. 541s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_armhf.deb ... 541s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 541s Selecting previously unselected package libtk8.6:armhf. 541s Preparing to unpack .../094-libtk8.6_8.6.17-1_armhf.deb ... 541s Unpacking libtk8.6:armhf (8.6.17-1) ... 541s Selecting previously unselected package libudunits2-data. 541s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 541s Unpacking libudunits2-data (2.2.28-8) ... 541s Selecting previously unselected package libudunits2-0:armhf. 541s Preparing to unpack .../096-libudunits2-0_2.2.28-8_armhf.deb ... 541s Unpacking libudunits2-0:armhf (2.2.28-8) ... 541s Selecting previously unselected package libxt6t64:armhf. 541s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 541s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 541s Selecting previously unselected package zip. 541s Preparing to unpack .../098-zip_3.0-15ubuntu3_armhf.deb ... 541s Unpacking zip (3.0-15ubuntu3) ... 541s Selecting previously unselected package unzip. 541s Preparing to unpack .../099-unzip_6.0-29ubuntu1_armhf.deb ... 541s Unpacking unzip (6.0-29ubuntu1) ... 541s Selecting previously unselected package xdg-utils. 541s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu2_all.deb ... 541s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 541s Selecting previously unselected package r-base-core. 541s Preparing to unpack .../101-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 541s Unpacking r-base-core (4.5.2-1ubuntu2) ... 541s Selecting previously unselected package r-cran-abind. 541s Preparing to unpack .../102-r-cran-abind_1.4-8-1build1_all.deb ... 541s Unpacking r-cran-abind (1.4-8-1build1) ... 541s Selecting previously unselected package r-cran-mass. 541s Preparing to unpack .../103-r-cran-mass_7.3-65-1_armhf.deb ... 541s Unpacking r-cran-mass (7.3-65-1) ... 541s Selecting previously unselected package r-cran-class. 541s Preparing to unpack .../104-r-cran-class_7.3-23-1_armhf.deb ... 541s Unpacking r-cran-class (7.3-23-1) ... 541s Selecting previously unselected package r-cran-proxy. 541s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_armhf.deb ... 541s Unpacking r-cran-proxy (0.4-27-1) ... 542s Selecting previously unselected package r-cran-e1071. 542s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_armhf.deb ... 542s Unpacking r-cran-e1071 (1.7-17-1) ... 542s Selecting previously unselected package r-cran-kernsmooth. 542s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_armhf.deb ... 542s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 542s Selecting previously unselected package r-cran-classint. 542s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_armhf.deb ... 542s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 542s Selecting previously unselected package r-cran-cli. 542s Preparing to unpack .../109-r-cran-cli_3.6.4-1_armhf.deb ... 542s Unpacking r-cran-cli (3.6.4-1) ... 542s Selecting previously unselected package r-cran-codetools. 542s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 542s Unpacking r-cran-codetools (0.2-20-1build1) ... 542s Selecting previously unselected package r-cran-dbi. 542s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 542s Unpacking r-cran-dbi (1.2.3-1build1) ... 542s Selecting previously unselected package r-cran-digest. 542s Preparing to unpack .../112-r-cran-digest_0.6.39-1_armhf.deb ... 542s Unpacking r-cran-digest (0.6.39-1) ... 542s Selecting previously unselected package r-cran-dotcall64. 542s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_armhf.deb ... 542s Unpacking r-cran-dotcall64 (1.2-1) ... 542s Selecting previously unselected package r-cran-fansi. 542s Preparing to unpack .../114-r-cran-fansi_1.0.6-2_armhf.deb ... 542s Unpacking r-cran-fansi (1.0.6-2) ... 542s Selecting previously unselected package r-cran-farver. 542s Preparing to unpack .../115-r-cran-farver_2.1.2-1_armhf.deb ... 542s Unpacking r-cran-farver (2.1.2-1) ... 542s Selecting previously unselected package r-cran-littler. 542s Preparing to unpack .../116-r-cran-littler_0.3.22-1_armhf.deb ... 542s Unpacking r-cran-littler (0.3.22-1) ... 542s Selecting previously unselected package r-cran-pkgkitten. 542s Preparing to unpack .../117-r-cran-pkgkitten_0.2.4-1_all.deb ... 542s Unpacking r-cran-pkgkitten (0.2.4-1) ... 542s Selecting previously unselected package r-cran-rcpp. 542s Preparing to unpack .../118-r-cran-rcpp_1.1.0-1_armhf.deb ... 542s Unpacking r-cran-rcpp (1.1.0-1) ... 542s Selecting previously unselected package r-cran-spam. 542s Preparing to unpack .../119-r-cran-spam_2.11-1-1_armhf.deb ... 542s Unpacking r-cran-spam (2.11-1-1) ... 542s Selecting previously unselected package r-cran-viridislite. 542s Preparing to unpack .../120-r-cran-viridislite_0.4.3-1_all.deb ... 542s Unpacking r-cran-viridislite (0.4.3-1) ... 542s Selecting previously unselected package r-cran-maps. 542s Preparing to unpack .../121-r-cran-maps_3.4.2.1-1_armhf.deb ... 542s Unpacking r-cran-maps (3.4.2.1-1) ... 542s Selecting previously unselected package r-cran-fields. 542s Preparing to unpack .../122-r-cran-fields_16.3.1-1_armhf.deb ... 542s Unpacking r-cran-fields (16.3.1-1) ... 542s Selecting previously unselected package r-cran-fnn. 542s Preparing to unpack .../123-r-cran-fnn_1.1.4.1-1_armhf.deb ... 542s Unpacking r-cran-fnn (1.1.4.1-1) ... 542s Selecting previously unselected package r-cran-globals. 542s Preparing to unpack .../124-r-cran-globals_0.19.0-1_all.deb ... 542s Unpacking r-cran-globals (0.19.0-1) ... 542s Selecting previously unselected package r-cran-listenv. 543s Preparing to unpack .../125-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 543s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 543s Selecting previously unselected package r-cran-parallelly. 543s Preparing to unpack .../126-r-cran-parallelly_1.42.0-1_armhf.deb ... 543s Unpacking r-cran-parallelly (1.42.0-1) ... 543s Selecting previously unselected package r-cran-future. 543s Preparing to unpack .../127-r-cran-future_1.34.0+dfsg-1_all.deb ... 543s Unpacking r-cran-future (1.34.0+dfsg-1) ... 543s Selecting previously unselected package r-cran-future.apply. 543s Preparing to unpack .../128-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 543s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 543s Selecting previously unselected package r-cran-glue. 543s Preparing to unpack .../129-r-cran-glue_1.8.0-1_armhf.deb ... 543s Unpacking r-cran-glue (1.8.0-1) ... 543s Selecting previously unselected package r-cran-rlang. 543s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_armhf.deb ... 543s Unpacking r-cran-rlang (1.1.5-3) ... 543s Selecting previously unselected package r-cran-lifecycle. 543s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 543s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 543s Selecting previously unselected package r-cran-gtable. 543s Preparing to unpack .../132-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 543s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 543s Selecting previously unselected package r-cran-isoband. 543s Preparing to unpack .../133-r-cran-isoband_0.2.7-1_armhf.deb ... 543s Unpacking r-cran-isoband (0.2.7-1) ... 543s Selecting previously unselected package r-cran-lattice. 543s Preparing to unpack .../134-r-cran-lattice_0.22-9-1_armhf.deb ... 543s Unpacking r-cran-lattice (0.22-9-1) ... 543s Selecting previously unselected package r-cran-nlme. 543s Preparing to unpack .../135-r-cran-nlme_3.1.168-1_armhf.deb ... 543s Unpacking r-cran-nlme (3.1.168-1) ... 543s Selecting previously unselected package r-cran-matrix. 543s Preparing to unpack .../136-r-cran-matrix_1.7-4-1_armhf.deb ... 543s Unpacking r-cran-matrix (1.7-4-1) ... 543s Selecting previously unselected package r-cran-mgcv. 543s Preparing to unpack .../137-r-cran-mgcv_1.9-4-1_armhf.deb ... 543s Unpacking r-cran-mgcv (1.9-4-1) ... 543s Selecting previously unselected package r-cran-labeling. 543s Preparing to unpack .../138-r-cran-labeling_0.4.3-1_all.deb ... 543s Unpacking r-cran-labeling (0.4.3-1) ... 543s Selecting previously unselected package r-cran-r6. 543s Preparing to unpack .../139-r-cran-r6_2.6.1-1_all.deb ... 543s Unpacking r-cran-r6 (2.6.1-1) ... 543s Selecting previously unselected package r-cran-rcolorbrewer. 543s Preparing to unpack .../140-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 543s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 543s Selecting previously unselected package r-cran-scales. 543s Preparing to unpack .../141-r-cran-scales_1.4.0-1_all.deb ... 543s Unpacking r-cran-scales (1.4.0-1) ... 543s Selecting previously unselected package r-cran-magrittr. 543s Preparing to unpack .../142-r-cran-magrittr_2.0.3-1_armhf.deb ... 543s 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triggers for man-db (2.13.1-1build1) ... 557s autopkgtest [23:06:48]: test run-unit-test: [----------------------- 559s BEGIN TEST allier.R 559s 559s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 559s Copyright (C) 2025 The R Foundation for Statistical Computing 559s Platform: arm-unknown-linux-gnueabihf (32-bit) 559s 559s R is free software and comes with ABSOLUTELY NO WARRANTY. 559s You are welcome to redistribute it under certain conditions. 559s Type 'license()' or 'licence()' for distribution details. 559s 559s R is a collaborative project with many contributors. 559s Type 'contributors()' for more information and 559s 'citation()' on how to cite R or R packages in publications. 559s 559s Type 'demo()' for some demos, 'help()' for on-line help, or 559s 'help.start()' for an HTML browser interface to help. 559s Type 'q()' to quit R. 559s 559s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 559s > library(sp) 559s > library(gstat) 560s > 560s > # some data 560s > x <- c(215, 330, 410, 470, 545) 560s > y <- c(230, 310, 330, 340, 365) 560s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 560s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 560s > Allier <- data.frame(x, y, fc, por) 560s > coordinates(Allier) = ~x+y 560s > 560s > # gstat object for co-kriging using linear model of co-regionalization 560s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 560s + model=vgm(0.00247, "Sph", 480, 0.00166)) 560s > g <- gstat(g, id="por", formula=por~1, data=Allier, 560s + model=vgm(0.00239, "Sph", 480, 0.00118)) 560s > g <- gstat(g, id=c("fc", "por"), 560s + model=vgm(0.00151, "Sph", 480, -0.00124)) 560s > 560s > # predict at single point 560s > g$set = list(choleski = 0) # LDL' 560s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 560s Linear Model of Coregionalization found. Good. 560s [using ordinary cokriging] 560s we're at location X: 450 Y: 350 Z: 0 560s zero block size 560s we're at point X: 450 Y: 350 Z: 0 560s 560s # X: 560s #Matrix: 10 by 2 560s rbind( 560s c( 1.000000, 0.000000), # row 1 560s c( 1.000000, 0.000000), # row 2 560s c( 1.000000, 0.000000), # row 3 560s c( 1.000000, 0.000000), # row 4 560s c( 1.000000, 0.000000), # row 5 560s c( 0.000000, 1.000000), # row 6 560s c( 0.000000, 1.000000), # row 7 560s c( 0.000000, 1.000000), # row 8 560s c( 0.000000, 1.000000), # row 9 560s c( 0.000000, 1.000000) # row 10 560s ) 560s [using generalized covariances: max_val - semivariance()] 560s # Covariances (x_i, x_j) matrix C (upper triangle): 560s #Matrix: 10 by 10 560s rbind( 560s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 560s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 560s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 560s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 560s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 560s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 560s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 560s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 560s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 560s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 560s ) 560s 560s # glm->C, LDL' decomposed:: 560s #Matrix: 10 by 10 560s rbind( 560s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 560s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 560s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 560s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 560s ) 560s 560s # X'C-1 X: 560s #Matrix: 2 by 2 560s rbind( 560s c(665.433994, -232.313340), # row 1 560s c(-232.313340, 729.440848) # row 2 560s ) 560s 560s # beta: 560s #Vector: dim: 2 560s c( 0.244216, 0.440933) 560s # Cov(beta), (X'C-1 X)-1: 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.001691, 0.000538), # row 1 560s c( 0.000538, 0.001542) # row 2 560s ) 560s 560s # Corr(beta): 560s #Matrix: 2 by 2 560s rbind( 560s c( 1.000000, 0.333447), # row 1 560s c( 0.333447, 1.000000) # row 2 560s ) 560s 560s # X0 (X values at prediction location x0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 1.000000, 0.000000), # row 1 560s c( 0.000000, 1.000000) # row 2 560s ) 560s 560s # BLUE(mu), E(y(x0)) = X0'beta: 560s #Vector: dim: 2 560s c( 0.244216, 0.440933) 560s # Covariances (x_i, x_0), C0: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.000638, 0.000390), # row 1 560s c( 0.001516, 0.000927), # row 2 560s c( 0.002126, 0.001300), # row 3 560s c( 0.002298, 0.001405), # row 4 560s c( 0.001738, 0.001062), # row 5 560s c( 0.000390, 0.000618), # row 6 560s c( 0.000927, 0.001467), # row 7 560s c( 0.001300, 0.002057), # row 8 560s c( 0.001405, 0.002223), # row 9 560s c( 0.001062, 0.001681) # row 10 560s ) 560s 560s # C-1 C0: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.008927, -0.017995), # row 1 560s c( 0.061935, -0.028550), # row 2 560s c( 0.225195, 0.078344), # row 3 560s c( 0.356735, 0.190177), # row 4 560s c( 0.094128, -0.023136), # row 5 560s c(-0.021119, 0.004935), # row 6 560s c(-0.033508, 0.055601), # row 7 560s c( 0.091947, 0.242576), # row 8 560s c( 0.223200, 0.398927), # row 9 560s c(-0.027153, 0.088995) # row 10 560s ) 560s 560s # [a] Cov_ij(B,B) or Cov_ij(0,0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.004130, 0.000270), # row 1 560s c( 0.000270, 0.003570) # row 2 560s ) 560s 560s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.000129, -0.000107), # row 1 560s c(-0.000107, 0.000089) # row 2 560s ) 560s 560s # [b] c0'C-1 c0: 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.001926, 0.001532), # row 1 560s c( 0.001532, 0.001931) # row 2 560s ) 560s 560s # Best Linear Unbiased Predictor: 560s #Vector: dim: 2 560s c( 0.253090, 0.441258) 560s # MSPE ([a]-[b]+[c]): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.002332, -0.001369), # row 1 560s c(-0.001369, 0.001729) # row 2 560s ) 560s 560s # kriging weights: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.071177, -0.064988), # row 1 560s c( 0.108451, -0.066123), # row 2 560s c( 0.268160, 0.043141), # row 3 560s c( 0.401959, 0.153312), # row 4 560s c( 0.150253, -0.065342), # row 5 560s c(-0.076273, 0.056759), # row 6 560s c(-0.077605, 0.093781), # row 7 560s c( 0.050632, 0.277731), # row 8 560s c( 0.179933, 0.435972), # row 9 560s c(-0.076688, 0.135756) # row 10 560s ) 560s 560s 560s > g$set = list(choleski = 1) # Choleski 560s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 560s Linear Model of Coregionalization found. Good. 560s [using ordinary cokriging] 560s we're at location X: 450 Y: 350 Z: 0 560s zero block size 560s we're at point X: 450 Y: 350 Z: 0 560s 560s # X: 560s #Matrix: 10 by 2 560s rbind( 560s c( 1.000000, 0.000000), # row 1 560s c( 1.000000, 0.000000), # row 2 560s c( 1.000000, 0.000000), # row 3 560s c( 1.000000, 0.000000), # row 4 560s c( 1.000000, 0.000000), # row 5 560s c( 0.000000, 1.000000), # row 6 560s c( 0.000000, 1.000000), # row 7 560s c( 0.000000, 1.000000), # row 8 560s c( 0.000000, 1.000000), # row 9 560s c( 0.000000, 1.000000) # row 10 560s ) 560s [using generalized covariances: max_val - semivariance()] 560s # Covariances (x_i, x_j) matrix C (upper triangle): 560s #Matrix: 10 by 10 560s rbind( 560s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 560s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 560s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 560s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 560s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 560s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 560s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 560s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 560s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 560s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 560s ) 560s 560s # glm->C, Choleski decomposed:: 560s #Matrix: 10 by 10 560s rbind( 560s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 560s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 560s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 560s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 560s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 560s ) 560s 560s # X'C-1 X: 560s #Matrix: 2 by 2 560s rbind( 560s c(665.433994, -232.313340), # row 1 560s c(-232.313340, 729.440848) # row 2 560s ) 560s 560s # beta: 560s #Vector: dim: 2 560s c( 0.244216, 0.440933) 560s # Cov(beta), (X'C-1 X)-1: 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.001691, 0.000538), # row 1 560s c( 0.000538, 0.001542) # row 2 560s ) 560s 560s # Corr(beta): 560s #Matrix: 2 by 2 560s rbind( 560s c( 1.000000, 0.333447), # row 1 560s c( 0.333447, 1.000000) # row 2 560s ) 560s 560s # X0 (X values at prediction location x0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 1.000000, 0.000000), # row 1 560s c( 0.000000, 1.000000) # row 2 560s ) 560s 560s # BLUE(mu), E(y(x0)) = X0'beta: 560s #Vector: dim: 2 560s c( 0.244216, 0.440933) 560s # Covariances (x_i, x_0), C0: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.000638, 0.000390), # row 1 560s c( 0.001516, 0.000927), # row 2 560s c( 0.002126, 0.001300), # row 3 560s c( 0.002298, 0.001405), # row 4 560s c( 0.001738, 0.001062), # row 5 560s c( 0.000390, 0.000618), # row 6 560s c( 0.000927, 0.001467), # row 7 560s c( 0.001300, 0.002057), # row 8 560s c( 0.001405, 0.002223), # row 9 560s c( 0.001062, 0.001681) # row 10 560s ) 560s 560s # C-1 C0: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.008927, -0.017995), # row 1 560s c( 0.061935, -0.028550), # row 2 560s c( 0.225195, 0.078344), # row 3 560s c( 0.356735, 0.190177), # row 4 560s c( 0.094128, -0.023136), # row 5 560s c(-0.021119, 0.004935), # row 6 560s c(-0.033508, 0.055601), # row 7 560s c( 0.091947, 0.242576), # row 8 560s c( 0.223200, 0.398927), # row 9 560s c(-0.027153, 0.088995) # row 10 560s ) 560s 560s # [a] Cov_ij(B,B) or Cov_ij(0,0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.004130, 0.000270), # row 1 560s c( 0.000270, 0.003570) # row 2 560s ) 560s 560s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.000129, -0.000107), # row 1 560s c(-0.000107, 0.000089) # row 2 560s ) 560s 560s # [b] c0'C-1 c0: 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.001926, 0.001532), # row 1 560s c( 0.001532, 0.001931) # row 2 560s ) 560s 560s # Best Linear Unbiased Predictor: 560s #Vector: dim: 2 560s c( 0.253090, 0.441258) 560s # MSPE ([a]-[b]+[c]): 560s #Matrix: 2 by 2 560s rbind( 560s c( 0.002332, -0.001369), # row 1 560s c(-0.001369, 0.001729) # row 2 560s ) 560s 560s # kriging weights: 560s #Matrix: 10 by 2 560s rbind( 560s c( 0.071177, -0.064988), # row 1 560s c( 0.108451, -0.066123), # row 2 560s c( 0.268160, 0.043141), # row 3 560s c( 0.401959, 0.153312), # row 4 560s c( 0.150253, -0.065342), # row 5 560s c(-0.076273, 0.056759), # row 6 560s c(-0.077605, 0.093781), # row 7 560s c( 0.050632, 0.277731), # row 8 560s c( 0.179933, 0.435972), # row 9 560s c(-0.076688, 0.135756) # row 10 560s ) 560s 560s 560s > all.equal(A,B) 560s [1] TRUE 560s > 560s > # TRUE 560s > 560s BEGIN TEST blockkr.R 560s 560s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 560s Copyright (C) 2025 The R Foundation for Statistical Computing 560s Platform: arm-unknown-linux-gnueabihf (32-bit) 560s 560s R is free software and comes with ABSOLUTELY NO WARRANTY. 560s You are welcome to redistribute it under certain conditions. 560s Type 'license()' or 'licence()' for distribution details. 560s 560s R is a collaborative project with many contributors. 560s Type 'contributors()' for more information and 560s 'citation()' on how to cite R or R packages in publications. 560s 560s Type 'demo()' for some demos, 'help()' for on-line help, or 560s 'help.start()' for an HTML browser interface to help. 560s Type 'q()' to quit R. 560s 560s > library(sp) 560s > data(meuse) 560s > coordinates(meuse) = c("x", "y") 560s > new.locs <- SpatialPoints(data.frame( 560s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 560s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 560s > library(gstat) 561s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 561s + block = c(40,40), nmax = 40) 561s [using ordinary kriging] 561s coordinates var1.pred var1.var 561s 1 (181170, 333250) 268.7576 19447.67 561s 2 (180310, 332189) 663.4915 16991.33 561s 3 (180205, 331707) 251.4606 21579.71 561s 4 (178673, 330066) 532.5776 73807.91 561s 5 (178770, 330675) 664.4039 23589.17 561s 6 (178270, 331075) 565.5436 155113.23 561s > 561s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 561s > 561s > disc = c(-15,-5,5,15) 561s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 561s > block.irreg 561s x y 561s 1 -15 -15 561s 2 -5 -15 561s 3 5 -15 561s 4 15 -15 561s 5 -15 -5 561s 6 -5 -5 561s 7 5 -5 561s 8 15 -5 561s 9 -15 5 561s 10 -5 5 561s 11 5 5 561s 12 15 5 561s 13 -15 15 561s 14 -5 15 561s 15 5 15 561s 16 15 15 561s > 561s > # first disable default Gaussian quadrature used for block integration, by 561s > # setting nblockdiscr explicitly: 561s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 561s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 561s [using ordinary kriging] 561s coordinates var1.pred var1.var 561s 1 (181170, 333250) 268.7324 19568.76 561s > # now pass the same block discretization as block.irreg: 561s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 561s + block = block.irreg, nmax = 40) 561s [using ordinary kriging] 561s coordinates var1.pred var1.var 561s 1 (181170, 333250) 268.7324 19568.76 561s > # check weights argument: 561s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 561s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 561s + block = block.irreg, nmax = 40) 561s [using ordinary kriging] 561s coordinates var1.pred var1.var 561s 1 (181170, 333250) 268.7324 19568.76 561s > 561s BEGIN TEST covtable.R 561s 561s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 561s Copyright (C) 2025 The R Foundation for Statistical Computing 561s Platform: arm-unknown-linux-gnueabihf (32-bit) 561s 561s R is free software and comes with ABSOLUTELY NO WARRANTY. 561s You are welcome to redistribute it under certain conditions. 561s Type 'license()' or 'licence()' for distribution details. 561s 561s R is a collaborative project with many contributors. 561s Type 'contributors()' for more information and 561s 'citation()' on how to cite R or R packages in publications. 561s 561s Type 'demo()' for some demos, 'help()' for on-line help, or 561s 'help.start()' for an HTML browser interface to help. 561s Type 'q()' to quit R. 561s 561s > library(gstat) 562s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 562s > d$z=1:4 562s > vv=vgm(model = "Tab", covtable = 562s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 562s > vv 562s model psill maxdist 562s 1 Tab NA 1 562s covariance table: 562s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 562s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 562s [using ordinary kriging] 562s x y var1.pred var1.var 562s 1 0 0 2.5 1.017767 562s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 562s [using ordinary kriging] 562s x y var1.pred var1.var 562s 1 0 0 2.5 1.017863 562s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 562s [using ordinary kriging] 562s x y var1.pred var1.var 562s 1 0 0 1.5 1.267767 562s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 562s [using ordinary kriging] 562s x y var1.pred var1.var 562s 1 0 0 1.5 1.267863 562s > 562s BEGIN TEST cv.R 562s 562s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 562s Copyright (C) 2025 The R Foundation for Statistical Computing 562s Platform: arm-unknown-linux-gnueabihf (32-bit) 562s 562s R is free software and comes with ABSOLUTELY NO WARRANTY. 562s You are welcome to redistribute it under certain conditions. 562s Type 'license()' or 'licence()' for distribution details. 562s 562s R is a collaborative project with many contributors. 562s Type 'contributors()' for more information and 562s 'citation()' on how to cite R or R packages in publications. 562s 562s Type 'demo()' for some demos, 'help()' for on-line help, or 562s 'help.start()' for an HTML browser interface to help. 562s Type 'q()' to quit R. 562s 562s > # try bivariate cokriging; cross validate first variable 562s > library(sp) 562s > data(meuse) 562s > library(gstat) 563s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 563s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 563s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 563s > v=variogram(g) 563s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 563s > g=fit.lmc(v, g) 563s > g 563s data: 563s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 563s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 563s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 563s variograms: 563s model psill range 563s log-zinc Sph 0.7132435 1000 563s log-lead Sph 0.6133020 1000 563s log-copper Sph 0.3634211 1000 563s log-zinc.log-lead Sph 0.6367012 1000 563s log-zinc.log-copper Sph 0.4570044 1000 563s log-lead.log-copper Sph 0.3934910 1000 563s ~x + y 563s > set.seed(13131) 563s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Warning message: 563s In checkNames(value) : 563s attempt to set invalid names: this may lead to problems later on. See ?make.names 563s log.zinc.pred log.zinc.var observed residual 563s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 563s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 563s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 563s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 563s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 563s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 563s zscore fold x y 563s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 563s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 563s Median :-0.10755 Median :3.000 Median :179991 Median :331633 563s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 563s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 563s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 563s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Intrinsic Correlation found. Good. 563s [using ordinary cokriging] 563s Warning message: 563s In checkNames(value) : 563s attempt to set invalid names: this may lead to problems later on. See ?make.names 563s log.zinc.pred log.zinc.var observed residual 563s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 563s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 563s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 563s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 563s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 563s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 563s zscore fold x y 563s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 563s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 563s Median : 0.007242 Median :3.000 Median :179991 Median :331633 563s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 563s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 563s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 563s > 563s BEGIN TEST cv3d.R 563s 563s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 563s Copyright (C) 2025 The R Foundation for Statistical Computing 563s Platform: arm-unknown-linux-gnueabihf (32-bit) 563s 563s R is free software and comes with ABSOLUTELY NO WARRANTY. 563s You are welcome to redistribute it under certain conditions. 563s Type 'license()' or 'licence()' for distribution details. 563s 563s R is a collaborative project with many contributors. 563s Type 'contributors()' for more information and 563s 'citation()' on how to cite R or R packages in publications. 563s 563s Type 'demo()' for some demos, 'help()' for on-line help, or 563s 'help.start()' for an HTML browser interface to help. 563s Type 'q()' to quit R. 563s 563s > options(digits = 4) 563s > set.seed(1131) 563s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 563s > library(gstat) 564s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 564s > summary(xx) 564s var1.pred var1.var observed residual 564s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 564s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 564s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 564s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 564s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 564s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 564s zscore fold x y 564s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 564s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 564s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 564s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 564s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 564s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 564s z 564s Min. :0.00164 564s 1st Qu.:0.18646 564s Median :0.44850 564s Mean :0.47142 564s 3rd Qu.:0.72403 564s Max. :0.99420 564s > 564s BEGIN TEST fit.R 564s 564s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 564s Copyright (C) 2025 The R Foundation for Statistical Computing 564s Platform: arm-unknown-linux-gnueabihf (32-bit) 564s 564s R is free software and comes with ABSOLUTELY NO WARRANTY. 564s You are welcome to redistribute it under certain conditions. 564s Type 'license()' or 'licence()' for distribution details. 564s 564s R is a collaborative project with many contributors. 564s Type 'contributors()' for more information and 564s 'citation()' on how to cite R or R packages in publications. 564s 564s Type 'demo()' for some demos, 'help()' for on-line help, or 564s 'help.start()' for an HTML browser interface to help. 564s Type 'q()' to quit R. 564s 564s > library(sp) 565s > data(meuse) 565s > library(gstat) 565s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 565s > v$gamma=c(0.5,1,2,3,3) 565s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 565s Warning message: 565s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 565s partial sill or nugget fixed at zero value 565s model psill range 565s 1 Nug 0.000000 0.00 565s 2 Sph 7.878195 1567.77 565s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 565s model psill range 565s 1 Nug 0.000000 0.00 565s 2 Sph 7.878195 1567.77 565s > 565s BEGIN TEST krige0.R 565s 565s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 565s Copyright (C) 2025 The R Foundation for Statistical Computing 565s Platform: arm-unknown-linux-gnueabihf (32-bit) 565s 565s R is free software and comes with ABSOLUTELY NO WARRANTY. 565s You are welcome to redistribute it under certain conditions. 565s Type 'license()' or 'licence()' for distribution details. 565s 565s R is a collaborative project with many contributors. 565s Type 'contributors()' for more information and 565s 'citation()' on how to cite R or R packages in publications. 565s 565s Type 'demo()' for some demos, 'help()' for on-line help, or 565s 'help.start()' for an HTML browser interface to help. 565s Type 'q()' to quit R. 565s 565s > # test -- load data: 565s > library(sp) 565s > data(meuse) 565s > coordinates(meuse) = ~x+y 566s > data(meuse.grid) 566s > gridded(meuse.grid) = ~x+y 566s > 566s > library(gstat) 566s > # test -- idw 566s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 566s > x <- idw(zinc~1, meuse, meuse.grid) 566s [inverse distance weighted interpolation] 566s > all.equal(x$var1.pred, meuse.grid$idw) 566s [1] TRUE 566s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 566s > v = vgm(1, "Exp", 500) 566s > # test sk: 566s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 566s > rownames(x0$pred)=NULL 566s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 567s [using simple kriging] 567s > all.equal(x$var1.pred, x0$pred[,1]) 567s [1] TRUE 567s > all.equal(x$var1.var, x0$var) 567s [1] TRUE 567s > # test ok: 567s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 567s > rownames(x0$pred)=NULL 567s > names(x0$var)=NULL 567s > x <- krige(zinc~1, meuse, meuse.grid, v) 567s [using ordinary kriging] 567s > all.equal(x$var1.pred, x0$pred[,1]) 567s [1] TRUE 567s > all.equal(x$var1.var, x0$var) 567s [1] TRUE 567s > # test uk: 567s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 567s > rownames(x0$pred)=NULL 567s > names(x0$var)=NULL 567s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 567s [using universal kriging] 567s > all.equal(x$var1.pred, x0$pred[,1]) 567s [1] TRUE 567s > all.equal(x$var1.var, x0$var) 567s [1] TRUE 567s > 567s BEGIN TEST line.R 567s 567s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 567s Copyright (C) 2025 The R Foundation for Statistical Computing 567s Platform: arm-unknown-linux-gnueabihf (32-bit) 567s 567s R is free software and comes with ABSOLUTELY NO WARRANTY. 567s You are welcome to redistribute it under certain conditions. 567s Type 'license()' or 'licence()' for distribution details. 567s 567s R is a collaborative project with many contributors. 567s Type 'contributors()' for more information and 567s 'citation()' on how to cite R or R packages in publications. 567s 567s Type 'demo()' for some demos, 'help()' for on-line help, or 567s 'help.start()' for an HTML browser interface to help. 567s Type 'q()' to quit R. 567s 568s > options(digits=5) 568s > library(sp) 568s > data(meuse.grid) 568s > gridded(meuse.grid) = ~x+y 568s > data(meuse) 568s > coordinates(meuse) = ~x+y 568s > 568s > # choose arbitrary line over the grid: 568s > image(meuse.grid["dist"],axes=T) 568s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 568s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 568s > plot(Sl,add=T,col='green') 568s > 568s > # use the default spsample arguments of predict.gstat: 568s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 568s > plot(pts, pch=3, cex=.2, add=T) 568s > 568s > library(gstat) 568s > v = vgm(.6, "Sph", 900, .06) 568s > out1 = krige(log(zinc)~1, meuse, Sl, v) 568s [using ordinary kriging] 568s > out1 568s An object of class "SpatialLinesDataFrame" 568s Slot "data": 568s x y var1.pred var1.var 568s a 180333 332167 6.1618 0.008025 568s 568s Slot "lines": 568s [[1]] 568s An object of class "Lines" 568s Slot "Lines": 568s [[1]] 568s An object of class "Line" 568s Slot "coords": 568s [,1] [,2] 568s [1,] 180000 331000 568s [2,] 180000 332000 568s [3,] 181000 333500 568s 568s 568s 568s Slot "ID": 568s [1] "a" 568s 568s 568s 568s Slot "bbox": 568s min max 568s x 180000 181000 568s y 331000 333500 568s 568s Slot "proj4string": 568s Coordinate Reference System: 568s Deprecated Proj.4 representation: NA 568s 568s > 568s > points(180333,332167,pch=3,cex=2) 568s > 568s > # use the same line as block discretization, and predict for (0,0) 568s > # (because the block discretizing points are not centered) 568s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 568s [using ordinary kriging] 568s > out2 568s coordinates var1.pred var1.var 568s 1 (0, 0) 6.1618 0.008025 568s > 568s > compare.krigingLines = function(formula, data, newdata, model) { 568s + out1 = krige(formula, data, newdata, model) 568s + pts = spsample(newdata, n=500, 'regular', offset=.5) 568s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 568s + print("difference:") 568s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 568s + } 568s > 568s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 568s [using ordinary kriging] 568s [using ordinary kriging] 568s [1] "difference:" 568s var1.pred var1.var 568s a 0 0 568s > 568s > # one line, consisting of two line segments: 568s > pp2 = rbind(c(181000,333500),c(181000,332500)) 568s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 568s > krige(log(zinc)~1, meuse, Sl2, v) 568s [using ordinary kriging] 568s An object of class "SpatialLinesDataFrame" 568s Slot "data": 568s x y var1.pred var1.var 568s a 180667 332583 6.0424 0.0053191 568s 568s Slot "lines": 568s [[1]] 568s An object of class "Lines" 568s Slot "Lines": 568s [[1]] 568s An object of class "Line" 568s Slot "coords": 568s [,1] [,2] 568s [1,] 180000 331000 568s [2,] 180000 332000 568s [3,] 181000 333500 568s 568s 568s [[2]] 568s An object of class "Line" 568s Slot "coords": 568s [,1] [,2] 568s [1,] 181000 333500 568s [2,] 181000 332500 568s 568s 568s 568s Slot "ID": 568s [1] "a" 568s 568s 568s 568s Slot "bbox": 568s min max 568s x 180000 181000 568s y 331000 333500 568s 568s Slot "proj4string": 568s Coordinate Reference System: 568s Deprecated Proj.4 representation: NA 568s 568s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 568s [using ordinary kriging] 569s [using ordinary kriging] 569s [1] "difference:" 569s var1.pred var1.var 569s a 0 0 569s > 569s > # two seperate line segments: 569s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 569s > krige(log(zinc)~1, meuse, Sl3, v) 569s [using ordinary kriging] 569s An object of class "SpatialLinesDataFrame" 569s Slot "data": 569s x y var1.pred var1.var 569s a 180333 332167 6.1618 0.008025 569s b 181000 333000 5.7060 0.011043 569s 569s Slot "lines": 569s [[1]] 569s An object of class "Lines" 569s Slot "Lines": 569s [[1]] 569s An object of class "Line" 569s Slot "coords": 569s [,1] [,2] 569s [1,] 180000 331000 569s [2,] 180000 332000 569s [3,] 181000 333500 569s 569s 569s 569s Slot "ID": 569s [1] "a" 569s 569s 569s [[2]] 569s An object of class "Lines" 569s Slot "Lines": 569s [[1]] 569s An object of class "Line" 569s Slot "coords": 569s [,1] [,2] 569s [1,] 181000 333500 569s [2,] 181000 332500 569s 569s 569s 569s Slot "ID": 569s [1] "b" 569s 569s 569s 569s Slot "bbox": 569s min max 569s x 180000 181000 569s y 331000 333500 569s 569s Slot "proj4string": 569s Coordinate Reference System: 569s Deprecated Proj.4 representation: NA 569s 569s > 569s BEGIN TEST merge.R 569s 569s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 569s Copyright (C) 2025 The R Foundation for Statistical Computing 569s Platform: arm-unknown-linux-gnueabihf (32-bit) 569s 569s R is free software and comes with ABSOLUTELY NO WARRANTY. 569s You are welcome to redistribute it under certain conditions. 569s Type 'license()' or 'licence()' for distribution details. 569s 569s R is a collaborative project with many contributors. 569s Type 'contributors()' for more information and 569s 'citation()' on how to cite R or R packages in publications. 569s 569s Type 'demo()' for some demos, 'help()' for on-line help, or 569s 'help.start()' for an HTML browser interface to help. 569s Type 'q()' to quit R. 569s 569s > options(digits=6) 569s > # illustrates the use of merge, for merging parameters accross variables: 569s > # Z1=m+e1(s) 569s > # Z2=m+e2(s) 569s > # Z1 and Z2 each have a different variogram, but share the parameter m 569s > # see documentation of gstat() function 569s > library(gstat) 569s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 569s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 569s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 569s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 569s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 569s > predict(g, data.frame(x=1,y=1), debug = 32) 570s Intrinsic Correlation found. Good. 570s [using ordinary cokriging] 570s we're at location X: 1 Y: 1 Z: 0 570s zero block size 570s we're at point X: 1 Y: 1 Z: 0 570s 570s # X: 570s #Matrix: 4 by 1 570s rbind( 570s c( 1.000000), # row 1 570s c( 1.000000), # row 2 570s c( 1.000000), # row 3 570s c( 1.000000) # row 4 570s ) 570s [using generalized covariances: max_val - semivariance()] 570s # Covariances (x_i, x_j) matrix C (upper triangle): 570s #Matrix: 4 by 4 570s rbind( 570s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 570s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 570s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 570s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 570s ) 570s 570s # glm->C, Choleski decomposed:: 570s #Matrix: 4 by 4 570s rbind( 570s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 570s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 570s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 570s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 570s ) 570s 570s # X'C-1 X: 570s #Matrix: 1 by 1 570s rbind( 570s c( 3.245289) # row 1 570s ) 570s 570s # beta: 570s #Vector: dim: 1 570s c( 2.500000) 570s # Cov(beta), (X'C-1 X)-1: 570s #Matrix: 1 by 1 570s rbind( 570s c( 0.308139) # row 1 570s ) 570s 570s # Corr(beta): 570s #Matrix: 1 by 1 570s rbind( 570s c( 1.000000) # row 1 570s ) 570s 570s # X0 (X values at prediction location x0): 570s #Matrix: 1 by 2 570s rbind( 570s c( 1.000000, 1.000000) # row 1 570s ) 570s 570s # BLUE(mu), E(y(x0)) = X0'beta: 570s #Vector: dim: 2 570s c( 2.500000, 2.500000) 570s # Covariances (x_i, x_0), C0: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.243117, 0.121558), # row 1 570s c( 0.243117, 0.121558), # row 2 570s c( 0.121558, 0.243117), # row 3 570s c( 0.121558, 0.243117) # row 4 570s ) 570s 570s # C-1 C0: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.206482, 0.089387), # row 1 570s c( 0.206482, 0.089387), # row 2 570s c( 0.089387, 0.206482), # row 3 570s c( 0.089387, 0.206482) # row 4 570s ) 570s 570s # [a] Cov_ij(B,B) or Cov_ij(0,0): 570s #Matrix: 2 by 2 570s rbind( 570s c( 1.000000, 0.500000), # row 1 570s c( 0.500000, 1.000000) # row 2 570s ) 570s 570s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 570s #Matrix: 2 by 2 570s rbind( 570s c( 0.051360, 0.051360), # row 1 570s c( 0.051360, 0.051360) # row 2 570s ) 570s 570s # [b] c0'C-1 c0: 570s #Matrix: 2 by 2 570s rbind( 570s c( 0.122130, 0.093662), # row 1 570s c( 0.093662, 0.122130) # row 2 570s ) 570s 570s # Best Linear Unbiased Predictor: 570s #Vector: dim: 2 570s c( 2.031619, 2.968381) 570s # MSPE ([a]-[b]+[c]): 570s #Matrix: 2 by 2 570s rbind( 570s c( 0.929230, 0.457698), # row 1 570s c( 0.457698, 0.929230) # row 2 570s ) 570s 570s # kriging weights: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.308548, 0.191452), # row 1 570s c( 0.308548, 0.191452), # row 2 570s c( 0.191452, 0.308548), # row 3 570s c( 0.191452, 0.308548) # row 4 570s ) 570s 570s 570s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 570s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 570s > 570s > # Z1 and Z2 share a regression slope: 570s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 570s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 570s + merge=list(c("d1",2,"d2",2))) 570s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 570s > predict(g, data.frame(x=1,y=1), debug = 32) 570s Intrinsic Correlation found. Good. 570s [using universal cokriging] 570s we're at location X: 1 Y: 1 Z: 0 570s zero block size 570s we're at point X: 1 Y: 1 Z: 0 570s 570s # X: 570s #Matrix: 4 by 3 570s rbind( 570s c( 1.000000, 0.000000, 0.000000), # row 1 570s c( 1.000000, 2.000000, 0.000000), # row 2 570s c( 0.000000, 0.000000, 1.000000), # row 3 570s c( 0.000000, 2.000000, 1.000000) # row 4 570s ) 570s [using generalized covariances: max_val - semivariance()] 570s # Covariances (x_i, x_j) matrix C (upper triangle): 570s #Matrix: 4 by 4 570s rbind( 570s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 570s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 570s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 570s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 570s ) 570s 570s # glm->C, Choleski decomposed:: 570s #Matrix: 4 by 4 570s rbind( 570s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 570s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 570s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 570s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 570s ) 570s 570s # X'C-1 X: 570s #Matrix: 3 by 3 570s rbind( 570s c( 1.774607, 1.622645, -0.151962), # row 1 570s c( 1.622645, 7.676050, 1.622645), # row 2 570s c(-0.151962, 1.622645, 1.774607) # row 3 570s ) 570s 570s # beta: 570s #Vector: dim: 3 570s c( 0.000000, 0.500000, 4.000000) 570s # Cov(beta), (X'C-1 X)-1: 570s #Matrix: 3 by 3 570s rbind( 570s c( 0.793363, -0.225695, 0.274305), # row 1 570s c(-0.225695, 0.225695, -0.225695), # row 2 570s c( 0.274305, -0.225695, 0.793363) # row 3 570s ) 570s 570s # Corr(beta): 570s #Matrix: 3 by 3 570s rbind( 570s c( 1.000000, -0.533366, 0.345750), # row 1 570s c(-0.533366, 1.000000, -0.533366), # row 2 570s c( 0.345750, -0.533366, 1.000000) # row 3 570s ) 570s 570s # X0 (X values at prediction location x0): 570s #Matrix: 3 by 2 570s rbind( 570s c( 1.000000, 0.000000), # row 1 570s c( 1.000000, 1.000000), # row 2 570s c( 0.000000, 1.000000) # row 3 570s ) 570s 570s # BLUE(mu), E(y(x0)) = X0'beta: 570s #Vector: dim: 2 570s c( 0.500000, 4.500000) 570s # Covariances (x_i, x_0), C0: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.243117, 0.121558), # row 1 570s c( 0.243117, 0.121558), # row 2 570s c( 0.121558, 0.243117), # row 3 570s c( 0.121558, 0.243117) # row 4 570s ) 570s 570s # C-1 C0: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.206482, 0.089387), # row 1 570s c( 0.206482, 0.089387), # row 2 570s c( 0.089387, 0.206482), # row 3 570s c( 0.089387, 0.206482) # row 4 570s ) 570s 570s # [a] Cov_ij(B,B) or Cov_ij(0,0): 570s #Matrix: 2 by 2 570s rbind( 570s c( 1.000000, 0.500000), # row 1 570s c( 0.500000, 1.000000) # row 2 570s ) 570s 570s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 570s #Matrix: 2 by 2 570s rbind( 570s c( 0.203564, -0.100844), # row 1 570s c(-0.100844, 0.203564) # row 2 570s ) 570s 570s # [b] c0'C-1 c0: 570s #Matrix: 2 by 2 570s rbind( 570s c( 0.122130, 0.093662), # row 1 570s c( 0.093662, 0.122130) # row 2 570s ) 570s 570s # Best Linear Unbiased Predictor: 570s #Vector: dim: 2 570s c( 0.500000, 4.500000) 570s # MSPE ([a]-[b]+[c]): 570s #Matrix: 2 by 2 570s rbind( 570s c( 1.081434, 0.305494), # row 1 570s c( 0.305494, 1.081434) # row 2 570s ) 570s 570s # kriging weights: 570s #Matrix: 4 by 2 570s rbind( 570s c( 0.500000, 0.000000), # row 1 570s c( 0.500000, 0.000000), # row 2 570s c( 0.000000, 0.500000), # row 3 570s c( 0.000000, 0.500000) # row 4 570s ) 570s 570s 570s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 570s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 570s > 570s BEGIN TEST na.action.R 570s 570s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 570s Copyright (C) 2025 The R Foundation for Statistical Computing 570s Platform: arm-unknown-linux-gnueabihf (32-bit) 570s 570s R is free software and comes with ABSOLUTELY NO WARRANTY. 570s You are welcome to redistribute it under certain conditions. 570s Type 'license()' or 'licence()' for distribution details. 570s 570s R is a collaborative project with many contributors. 570s Type 'contributors()' for more information and 570s 'citation()' on how to cite R or R packages in publications. 570s 570s Type 'demo()' for some demos, 'help()' for on-line help, or 570s 'help.start()' for an HTML browser interface to help. 570s Type 'q()' to quit R. 570s 570s > library(sp) 570s > 570s > data(meuse) 570s > data(meuse.grid) 570s > 570s > set.seed(13131) # reproduce results 570s > 570s > # select 10 random rows; 570s > # create two missing values in the coordinates: 570s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 570s > m[c(2,8), "x"] = NA 570s > 570s > library(gstat) 570s > ## this is not allowed anymore: 570s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 570s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 570s missing values in object 570s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 570s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 570s missing values in object 570s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 570s missing values in object 570s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 570s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 570s missing values in object 570s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 570s > 570s > # select 10 random rows; 570s > # create two missing values in the regressor variable: 570s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 570s > m[c(3,7), "dist"] = NA 570s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 570s [ordinary or weighted least squares prediction] 570s x y var1.pred var1.var 570s 1 178860 330860 6.530134 0.2415196 570s 2 180260 331860 5.389567 0.2406041 570s 3 180100 331860 NA NA 570s 4 180460 331820 5.213370 0.2417197 570s 5 179660 330580 5.550859 0.2398778 570s 6 179740 330300 6.108648 0.2395392 570s 7 180220 330660 NA NA 570s 8 178580 329820 6.533801 0.2415453 570s 9 180100 331900 5.580264 0.2397758 570s 10 180780 331900 5.095967 0.2426499 570s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 570s [ordinary or weighted least squares prediction] 570s x y var1.pred var1.var 570s 1877 178860 330860 6.530134 0.2415196 570s 1015 180260 331860 5.389567 0.2406041 570s 1056 180460 331820 5.213370 0.2417197 570s 2199 179660 330580 5.550859 0.2398778 570s 2556 179740 330300 6.108648 0.2395392 570s 2985 178580 329820 6.533801 0.2415453 570s 975 180100 331900 5.580264 0.2397758 570s 992 180780 331900 5.095967 0.2426499 570s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 570s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 570s missing values in object 570s [ordinary or weighted least squares prediction] 570s x y var1.pred var1.var 570s 1877 178860 330860 6.530134 0.2415196 570s 1015 180260 331860 5.389567 0.2406041 570s 1056 180460 331820 5.213370 0.2417197 570s 2199 179660 330580 5.550859 0.2398778 570s 2556 179740 330300 6.108648 0.2395392 570s 2985 178580 329820 6.533801 0.2415453 570s 975 180100 331900 5.580264 0.2397758 570s 992 180780 331900 5.095967 0.2426499 570s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 570s > 570s BEGIN TEST rings.R 571s 571s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 571s Copyright (C) 2025 The R Foundation for Statistical Computing 571s Platform: arm-unknown-linux-gnueabihf (32-bit) 571s 571s R is free software and comes with ABSOLUTELY NO WARRANTY. 571s You are welcome to redistribute it under certain conditions. 571s Type 'license()' or 'licence()' for distribution details. 571s 571s R is a collaborative project with many contributors. 571s Type 'contributors()' for more information and 571s 'citation()' on how to cite R or R packages in publications. 571s 571s Type 'demo()' for some demos, 'help()' for on-line help, or 571s 'help.start()' for an HTML browser interface to help. 571s Type 'q()' to quit R. 571s 571s > library(sp) 571s > library(gstat) 571s > set.seed(13331) 571s > 571s > x = runif(10) 571s > y = runif(10) 571s > z = rnorm(10) 571s > d = data.frame(x=x,y=y,z=z) 571s > bl = c(1,1) 571s > 571s > nd = data.frame(x=.5, y=.5) 571s > 571s > # single block: 571s > library(sp) 571s > coordinates(d) = ~x+y 571s > nd = SpatialPoints(nd) 571s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 571s + set = list(nb=4)) 571s [using ordinary kriging] 571s > 571s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 571s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 571s > a = data.frame(a = 1, b = 2) 571s > rownames(a) = "xx" 571s > r1df = SpatialPolygonsDataFrame(r1, a) 571s > 571s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 571s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 571s > yy = predict(g, r1df, block = bl, sps.args = args) 571s [using ordinary kriging] 571s > 571s > xx = as.data.frame(xx) 571s > yy = as.data.frame(yy) 571s > row.names(xx) = row.names(yy) 571s > print(all.equal(xx,yy)) 571s [1] TRUE 571s > 571s > ## multiple blocks of equal size: 571s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 571s > nd = SpatialPoints(nd) 571s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 571s + set = list(nb=4)) 571s [using ordinary kriging] 571s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 571s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 571s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 571s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 571s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 571s > r1 = SpatialPolygons(list( 571s + Polygons(list(Polygon(ring0)), ID = "x0"), 571s + Polygons(list(Polygon(ring1)), ID = "x1"), 571s + Polygons(list(Polygon(ring2)), ID = "x2"), 571s + Polygons(list(Polygon(ring3)), ID = "x3"), 571s + Polygons(list(Polygon(ring4)), ID = "x4") 571s + )) 571s > df = data.frame(a=rep(1,5), b= rep(1,5)) 571s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 571s > r1df = SpatialPolygonsDataFrame(r1, df) 571s > 571s > yy = predict(g, r1, block = bl, sps.args = args) 571s [using ordinary kriging] 571s > xx = as.data.frame(xx) 571s > yy = as.data.frame(yy) 571s > row.names(xx) = row.names(yy) 571s > all.equal(xx, yy) 571s [1] TRUE 571s > 571s > ## multiple blocks of equal size: 571s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 571s > yy = predict(g, r1, block = bl, sps.args = args) 571s [using ordinary kriging] 571s > xx = as.data.frame(xx) 571s > yy = as.data.frame(yy) 571s > row.names(xx) = row.names(yy) 571s > print(all.equal(xx, yy)) 571s [1] TRUE 571s > 571s > ## multiple blocks of varying size: 571s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 571s > nd = SpatialPoints(nd) 571s > bl = c(1,1) 571s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 571s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 571s + set = list(nb=4)) 571s [using ordinary kriging] 571s > bl = c(2,2) 571s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 571s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 571s + set = list(nb=4)) 572s [using ordinary kriging] 572s > bl = c(3,3) 572s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 572s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 572s + set = list(nb=4)) 572s [using ordinary kriging] 572s > r1 = SpatialPolygons(list( 572s + Polygons(list(Polygon(ring0)), ID = "x0"), 572s + Polygons(list(Polygon(ring1)), ID = "x1"), 572s + Polygons(list(Polygon(ring2)), ID = "x2") 572s + )) 572s > df = data.frame(a = rep(1,3), b = rep(1,3)) 572s > rownames(df) = c("x0", "x1", "x2") 572s > r1df = SpatialPolygonsDataFrame(r1, df) 572s > 572s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 572s > yy = predict(g, r1df, block = bl, sps.args = args) 572s [using ordinary kriging] 572s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 572s > row.names(xx) = 1:3 572s > xx = as.data.frame(xx) 572s > yy = as.data.frame(yy) 572s > row.names(xx) = row.names(yy) 572s > print(all.equal(xx, yy)) 572s [1] TRUE 572s > 572s BEGIN TEST sim.R 572s 572s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 572s Copyright (C) 2025 The R Foundation for Statistical Computing 572s Platform: arm-unknown-linux-gnueabihf (32-bit) 572s 572s R is free software and comes with ABSOLUTELY NO WARRANTY. 572s You are welcome to redistribute it under certain conditions. 572s Type 'license()' or 'licence()' for distribution details. 572s 572s R is a collaborative project with many contributors. 572s Type 'contributors()' for more information and 572s 'citation()' on how to cite R or R packages in publications. 572s 572s Type 'demo()' for some demos, 'help()' for on-line help, or 572s 'help.start()' for an HTML browser interface to help. 572s Type 'q()' to quit R. 572s 572s > options(digits=6) 572s > library(sp) 572s > data(meuse) 572s > set.seed(158229572) 572s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 572s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 572s > library(gstat) 572s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 572s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 572s + block = c(40,40), nmax = 40, nsim = 10) 572s drawing 10 GLS realisations of beta... 572s [using conditional Gaussian simulation] 572s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 572s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 572s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 572s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 572s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 572s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 572s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 572s sim8 sim9 sim10 572s 1 294.107 113.347 279.991 572s 2 776.498 724.160 901.692 572s 3 338.021 630.244 140.272 572s 4 127.301 957.242 444.007 572s 5 533.773 748.144 623.960 572s 6 1084.170 537.604 -214.972 572s > 572s BEGIN TEST stars.R 572s 572s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 572s Copyright (C) 2025 The R Foundation for Statistical Computing 572s Platform: arm-unknown-linux-gnueabihf (32-bit) 572s 572s R is free software and comes with ABSOLUTELY NO WARRANTY. 572s You are welcome to redistribute it under certain conditions. 572s Type 'license()' or 'licence()' for distribution details. 572s 572s R is a collaborative project with many contributors. 572s Type 'contributors()' for more information and 572s 'citation()' on how to cite R or R packages in publications. 572s 572s Type 'demo()' for some demos, 'help()' for on-line help, or 572s 'help.start()' for an HTML browser interface to help. 572s Type 'q()' to quit R. 572s 573s > Sys.setenv(TZ = "UTC") 573s > 573s > # 0. using sp: 573s > 573s > suppressPackageStartupMessages(library(sp)) 573s > demo(meuse, ask = FALSE) 573s 573s 573s demo(meuse) 573s ---- ~~~~~ 573s 573s > require(sp) 573s 573s > crs = CRS("EPSG:28992") 573s Warning: using units on a 32 bit system, which may not work correctly: https://bugs.debian.org/1102591 573s 573s > data("meuse") 573s 573s > coordinates(meuse) <- ~x+y 573s 573s > proj4string(meuse) <- crs 573s 573s > data("meuse.grid") 573s 573s > coordinates(meuse.grid) <- ~x+y 573s 573s > gridded(meuse.grid) <- TRUE 573s 573s > proj4string(meuse.grid) <- crs 573s 573s > data("meuse.riv") 573s 573s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 573s 573s > proj4string(meuse.riv) <- crs 573s 573s > data("meuse.area") 573s 573s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 573s 573s > proj4string(meuse.area) <- crs 573s > suppressPackageStartupMessages(library(gstat)) 574s > v = variogram(log(zinc)~1, meuse) 574s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 574s model psill range 574s 1 Nug 0.05066243 0.0000 574s 2 Sph 0.59060780 897.0209 574s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 574s [using ordinary kriging] 574s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 574s [using ordinary kriging] 574s > 574s > # 1. using sf: 574s > suppressPackageStartupMessages(library(sf)) 574s > demo(meuse_sf, ask = FALSE, echo = FALSE) 574s > # reloads meuse as data.frame, so 574s > demo(meuse, ask = FALSE) 574s 574s 574s demo(meuse) 574s ---- ~~~~~ 574s 574s > require(sp) 574s 574s > crs = CRS("EPSG:28992") 574s 574s > data("meuse") 574s 574s > coordinates(meuse) <- ~x+y 574s 574s > proj4string(meuse) <- crs 574s 574s > data("meuse.grid") 574s 574s > coordinates(meuse.grid) <- ~x+y 574s 574s > gridded(meuse.grid) <- TRUE 574s 574s > proj4string(meuse.grid) <- crs 574s 574s > data("meuse.riv") 574s 574s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 574s 574s > proj4string(meuse.riv) <- crs 574s 574s > data("meuse.area") 574s 574s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 574s 574s > proj4string(meuse.area) <- crs 574s > 574s > v = variogram(log(zinc)~1, meuse_sf) 574s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 574s model psill range 574s 1 Nug 0.05066243 0.0000 574s 2 Sph 0.59060780 897.0209 574s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 575s [using ordinary kriging] 575s > 575s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 575s [1] TRUE 575s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 575s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 575s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 575s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 575s > 575s > # 2. using stars for grid: 575s > 575s > suppressPackageStartupMessages(library(stars)) 575s > st = st_as_stars(meuse.grid) 575s > st_crs(st) 575s Coordinate Reference System: 575s User input: Amersfoort / RD New 575s wkt: 575s PROJCRS["Amersfoort / RD New", 575s BASEGEOGCRS["Amersfoort", 575s DATUM["Amersfoort", 575s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 575s LENGTHUNIT["metre",1]]], 575s PRIMEM["Greenwich",0, 575s ANGLEUNIT["degree",0.0174532925199433]], 575s ID["EPSG",4289]], 575s CONVERSION["RD New", 575s METHOD["Oblique Stereographic", 575s ID["EPSG",9809]], 575s PARAMETER["Latitude of natural origin",52.1561605555556, 575s ANGLEUNIT["degree",0.0174532925199433], 575s ID["EPSG",8801]], 575s PARAMETER["Longitude of natural origin",5.38763888888889, 575s ANGLEUNIT["degree",0.0174532925199433], 575s ID["EPSG",8802]], 575s PARAMETER["Scale factor at natural origin",0.9999079, 575s SCALEUNIT["unity",1], 575s ID["EPSG",8805]], 575s PARAMETER["False easting",155000, 575s LENGTHUNIT["metre",1], 575s ID["EPSG",8806]], 575s PARAMETER["False northing",463000, 575s LENGTHUNIT["metre",1], 575s ID["EPSG",8807]]], 575s CS[Cartesian,2], 575s AXIS["easting (X)",east, 575s ORDER[1], 575s LENGTHUNIT["metre",1]], 575s AXIS["northing (Y)",north, 575s ORDER[2], 575s LENGTHUNIT["metre",1]], 575s USAGE[ 575s SCOPE["Engineering survey, topographic mapping."], 575s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 575s BBOX[50.75,3.2,53.7,7.22]], 575s ID["EPSG",28992]] 575s > 575s > # compare inputs: 575s > sp = as(st, "Spatial") 575s > fullgrid(meuse.grid) = TRUE 575s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 575s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 575s [2] "Names: 1 string mismatch" 575s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 575s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 575s [2] "Names: 1 string mismatch" 575s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 575s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 575s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 575s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 575s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 575s > 575s > # kriging: 575s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 575s > k_st = if (Sys.getenv("USER") == "travis") { 575s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 575s + } else { 575s + krige(log(zinc)~1, meuse_sf, st, v.fit) 575s + } 575s [using ordinary kriging] 575s > k_st 575s stars object with 2 dimensions and 2 attributes 575s attribute(s): 575s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 575s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 575s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 575s dimension(s): 575s from to offset delta x/y 575s x 1 78 178440 40 [x] 575s y 1 104 333760 -40 [y] 575s > 575s > # handle factors, when going to stars? 575s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 575s > st_as_stars(k_sp_grd) 575s stars object with 2 dimensions and 3 attributes 575s attribute(s): 575s var1.pred var1.var cls 575s Min. :4.777 Min. :0.0855 (0,5]: 316 575s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 575s Median :5.573 Median :0.1622 (6,7]: 962 575s Mean :5.707 Mean :0.1853 (7,8]: 47 575s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 575s Max. :7.440 Max. :0.5003 NA's :5009 575s NA's :5009 NA's :5009 575s dimension(s): 575s from to offset delta refsys x/y 575s x 1 78 178440 40 Amersfoort / RD New [x] 575s y 1 104 333760 -40 Amersfoort / RD New [y] 575s > if (require(raster, quietly = TRUE)) { 575s + print(st_as_stars(raster::stack(k_sp_grd))) # check 575s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 575s + } 581s stars object with 3 dimensions and 1 attribute 581s attribute(s): 581s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 581s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 581s dimension(s): 581s from to offset delta refsys values 581s x 1 78 178440 40 Amersfoort / RD New NULL 581s y 1 104 333760 -40 Amersfoort / RD New NULL 581s band 1 3 NA NA NA var1.pred, var1.var , cls 581s x/y 581s x [x] 581s y [y] 581s band 582s [1] TRUE 582s > 582s > suppressPackageStartupMessages(library(spacetime)) 582s > 582s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 582s > n = 4 582s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 582s + stars:::create_dimensions(list( 582s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 582s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 582s + time = stars:::create_dimension(values = tm + 1:n)), 582s + raster = stars:::get_raster(dimensions = c("x", "y"))) 582s + ) 582s > s 582s stars object with 3 dimensions and 1 attribute 582s attribute(s): 582s Min. 1st Qu. Median Mean 3rd Qu. Max. 582s foo 1 16.75 32.5 32.5 48.25 64 582s dimension(s): 582s from to offset delta refsys x/y 582s x 1 4 10 0.5 NA [x] 582s y 1 4 0 -0.7 NA [y] 582s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 582s > 582s > as.data.frame(s) 582s x y time foo 582s 1 10.25 -0.35 2019-02-25 15:37:25 1 582s 2 10.75 -0.35 2019-02-25 15:37:25 2 582s 3 11.25 -0.35 2019-02-25 15:37:25 3 582s 4 11.75 -0.35 2019-02-25 15:37:25 4 582s 5 10.25 -1.05 2019-02-25 15:37:25 5 582s 6 10.75 -1.05 2019-02-25 15:37:25 6 582s 7 11.25 -1.05 2019-02-25 15:37:25 7 582s 8 11.75 -1.05 2019-02-25 15:37:25 8 582s 9 10.25 -1.75 2019-02-25 15:37:25 9 582s 10 10.75 -1.75 2019-02-25 15:37:25 10 582s 11 11.25 -1.75 2019-02-25 15:37:25 11 582s 12 11.75 -1.75 2019-02-25 15:37:25 12 582s 13 10.25 -2.45 2019-02-25 15:37:25 13 582s 14 10.75 -2.45 2019-02-25 15:37:25 14 582s 15 11.25 -2.45 2019-02-25 15:37:25 15 582s 16 11.75 -2.45 2019-02-25 15:37:25 16 582s 17 10.25 -0.35 2019-02-25 15:37:26 17 582s 18 10.75 -0.35 2019-02-25 15:37:26 18 582s 19 11.25 -0.35 2019-02-25 15:37:26 19 582s 20 11.75 -0.35 2019-02-25 15:37:26 20 582s 21 10.25 -1.05 2019-02-25 15:37:26 21 582s 22 10.75 -1.05 2019-02-25 15:37:26 22 582s 23 11.25 -1.05 2019-02-25 15:37:26 23 582s 24 11.75 -1.05 2019-02-25 15:37:26 24 582s 25 10.25 -1.75 2019-02-25 15:37:26 25 582s 26 10.75 -1.75 2019-02-25 15:37:26 26 582s 27 11.25 -1.75 2019-02-25 15:37:26 27 582s 28 11.75 -1.75 2019-02-25 15:37:26 28 582s 29 10.25 -2.45 2019-02-25 15:37:26 29 582s 30 10.75 -2.45 2019-02-25 15:37:26 30 582s 31 11.25 -2.45 2019-02-25 15:37:26 31 582s 32 11.75 -2.45 2019-02-25 15:37:26 32 582s 33 10.25 -0.35 2019-02-25 15:37:27 33 582s 34 10.75 -0.35 2019-02-25 15:37:27 34 582s 35 11.25 -0.35 2019-02-25 15:37:27 35 582s 36 11.75 -0.35 2019-02-25 15:37:27 36 582s 37 10.25 -1.05 2019-02-25 15:37:27 37 582s 38 10.75 -1.05 2019-02-25 15:37:27 38 582s 39 11.25 -1.05 2019-02-25 15:37:27 39 582s 40 11.75 -1.05 2019-02-25 15:37:27 40 582s 41 10.25 -1.75 2019-02-25 15:37:27 41 582s 42 10.75 -1.75 2019-02-25 15:37:27 42 582s 43 11.25 -1.75 2019-02-25 15:37:27 43 582s 44 11.75 -1.75 2019-02-25 15:37:27 44 582s 45 10.25 -2.45 2019-02-25 15:37:27 45 582s 46 10.75 -2.45 2019-02-25 15:37:27 46 582s 47 11.25 -2.45 2019-02-25 15:37:27 47 582s 48 11.75 -2.45 2019-02-25 15:37:27 48 582s 49 10.25 -0.35 2019-02-25 15:37:28 49 582s 50 10.75 -0.35 2019-02-25 15:37:28 50 582s 51 11.25 -0.35 2019-02-25 15:37:28 51 582s 52 11.75 -0.35 2019-02-25 15:37:28 52 582s 53 10.25 -1.05 2019-02-25 15:37:28 53 582s 54 10.75 -1.05 2019-02-25 15:37:28 54 582s 55 11.25 -1.05 2019-02-25 15:37:28 55 582s 56 11.75 -1.05 2019-02-25 15:37:28 56 582s 57 10.25 -1.75 2019-02-25 15:37:28 57 582s 58 10.75 -1.75 2019-02-25 15:37:28 58 582s 59 11.25 -1.75 2019-02-25 15:37:28 59 582s 60 11.75 -1.75 2019-02-25 15:37:28 60 582s 61 10.25 -2.45 2019-02-25 15:37:28 61 582s 62 10.75 -2.45 2019-02-25 15:37:28 62 582s 63 11.25 -2.45 2019-02-25 15:37:28 63 582s 64 11.75 -2.45 2019-02-25 15:37:28 64 582s > plot(s, col = sf.colors(), axes = TRUE) 582s > (s.stfdf = as(s, "STFDF")) 582s An object of class "STFDF" 582s Slot "data": 582s foo 582s 1 1 582s 2 2 582s 3 3 582s 4 4 582s 5 5 582s 6 6 582s 7 7 582s 8 8 582s 9 9 582s 10 10 582s 11 11 582s 12 12 582s 13 13 582s 14 14 582s 15 15 582s 16 16 582s 17 17 582s 18 18 582s 19 19 582s 20 20 582s 21 21 582s 22 22 582s 23 23 582s 24 24 582s 25 25 582s 26 26 582s 27 27 582s 28 28 582s 29 29 582s 30 30 582s 31 31 582s 32 32 582s 33 33 582s 34 34 582s 35 35 582s 36 36 582s 37 37 582s 38 38 582s 39 39 582s 40 40 582s 41 41 582s 42 42 582s 43 43 582s 44 44 582s 45 45 582s 46 46 582s 47 47 582s 48 48 582s 49 49 582s 50 50 582s 51 51 582s 52 52 582s 53 53 582s 54 54 582s 55 55 582s 56 56 582s 57 57 582s 58 58 582s 59 59 582s 60 60 582s 61 61 582s 62 62 582s 63 63 582s 64 64 582s 582s Slot "sp": 582s Object of class SpatialPixels 582s Grid topology: 582s cellcentre.offset cellsize cells.dim 582s x 10.25 0.5 4 582s y -2.45 0.7 4 582s SpatialPoints: 582s x y 582s [1,] 10.25 -0.35 582s [2,] 10.75 -0.35 582s [3,] 11.25 -0.35 582s [4,] 11.75 -0.35 582s [5,] 10.25 -1.05 582s [6,] 10.75 -1.05 582s [7,] 11.25 -1.05 582s [8,] 11.75 -1.05 582s [9,] 10.25 -1.75 582s [10,] 10.75 -1.75 582s [11,] 11.25 -1.75 582s [12,] 11.75 -1.75 582s [13,] 10.25 -2.45 582s [14,] 10.75 -2.45 582s [15,] 11.25 -2.45 582s [16,] 11.75 -2.45 582s Coordinate Reference System (CRS) arguments: NA 582s 582s Slot "time": 582s timeIndex 582s 2019-02-25 15:37:25 1 582s 2019-02-25 15:37:26 2 582s 2019-02-25 15:37:27 3 582s 2019-02-25 15:37:28 4 582s 582s Slot "endTime": 582s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 582s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 582s 582s > stplot(s.stfdf, scales = list(draw = TRUE)) 582s > 582s > (s2 = st_as_stars(s.stfdf)) 582s stars object with 3 dimensions and 1 attribute 582s attribute(s): 582s Min. 1st Qu. Median Mean 3rd Qu. Max. 582s foo 1 16.75 32.5 32.5 48.25 64 582s dimension(s): 582s from to offset delta refsys x/y 582s x 1 4 10 0.5 NA [x] 582s y 1 4 -1.11e-16 -0.7 NA [y] 582s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 582s > plot(s2, col = sf.colors(), axes = TRUE) 582s > all.equal(s, s2, check.attributes = FALSE) 582s [1] TRUE 582s > 582s > # multiple simulations: 582s > data(meuse, package = "sp") 582s > data(meuse.grid, package = "sp") 582s > coordinates(meuse.grid) <- ~x+y 582s > gridded(meuse.grid) <- TRUE 582s > meuse.grid = st_as_stars(meuse.grid) 582s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 582s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 582s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 582s > set.seed(123) 582s > ## IGNORE_RDIFF_BEGIN 582s > (p = predict(g, meuse.grid, nsim = 5)) 582s drawing 5 multivariate GLS realisations of beta... 582s [using conditional Gaussian simulation] 582s stars object with 3 dimensions and 2 attributes 582s attribute(s): 582s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 582s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 582s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 582s dimension(s): 582s from to offset delta values x/y 582s x 1 78 178440 40 NULL [x] 582s y 1 104 333760 -40 NULL [y] 582s sample 1 5 NA NA sim1,...,sim5 582s > ## IGNORE_RDIFF_END 582s > 582s BEGIN TEST unproj.R 582s 582s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 582s Copyright (C) 2025 The R Foundation for Statistical Computing 582s Platform: arm-unknown-linux-gnueabihf (32-bit) 582s 582s R is free software and comes with ABSOLUTELY NO WARRANTY. 582s You are welcome to redistribute it under certain conditions. 582s Type 'license()' or 'licence()' for distribution details. 582s 582s R is a collaborative project with many contributors. 582s Type 'contributors()' for more information and 582s 'citation()' on how to cite R or R packages in publications. 582s 582s Type 'demo()' for some demos, 'help()' for on-line help, or 582s 'help.start()' for an HTML browser interface to help. 582s Type 'q()' to quit R. 582s 582s > # DOI 10.1007/s11004-011-9344-7 582s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 582s > 582s > suppressPackageStartupMessages(library(sp)) 583s > library(gstat) 583s > 583s > if (require(sp, quietly = TRUE) && 583s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 583s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 583s + data(meuse) 583s + coordinates(meuse) = ~x+y 583s + proj4string(meuse) = CRS("+init=epsg:28992") 583s + ll = "+proj=longlat +ellps=WGS84" 583s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 583s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 583s + meuse.ll[1:10,] 583s + variogram(log(zinc)~1, meuse.ll) 583s + 583s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 583s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 583s + 583s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 583s + abline(0,1) 583s + 583s + data(ozone2) 583s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 583s + data.frame(t(ozone2$y)), 583s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 583s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 583s + utm16 = "+proj=utm +zone=16" 583s + # oz.utm = spTransform(oz, utm16) 583s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 583s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 583s + 583s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 583s + 583s + foo <- 583s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 583s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 583s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 583s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 583s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 583s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 583s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 583s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 583s + -11L), class = "data.frame") 583s + 583s + coordinates(foo) <- ~lon+lat 583s + 583s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 583s + 583s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 583s + 583s + cat('==========\nvariogram:\n') 583s + print(head(vg.foo)) 583s + 583s + cat('==========\nspDistsN1 Distances:\n') 583s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 583s + } 584s ========== 584s variogram: 585s dist gamma dir.hor dir.ver id left right 585s 1 3115.1190 8.971063e-04 0 0 var1 2 1 585s 2 1908.0468 1.909846e+01 0 0 var1 3 1 585s 3 1405.6211 1.883757e+01 0 0 var1 3 2 585s 4 1837.5667 1.347749e+01 0 0 var1 4 1 585s 5 1522.8765 1.325847e+01 0 0 var1 4 2 585s 6 119.9386 4.886139e-01 0 0 var1 4 3 585s ========== 585s spDistsN1 Distances: 585s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 585s [8] 3081.7541 4090.4022 665.9348 2683.1516 585s > 585s Warning message: 585s In CPL_crs_from_input(x) : 585s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 585s BEGIN TEST variogram.R 585s 585s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 585s Copyright (C) 2025 The R Foundation for Statistical Computing 585s Platform: arm-unknown-linux-gnueabihf (32-bit) 585s 585s R is free software and comes with ABSOLUTELY NO WARRANTY. 585s You are welcome to redistribute it under certain conditions. 585s Type 'license()' or 'licence()' for distribution details. 585s 585s R is a collaborative project with many contributors. 585s Type 'contributors()' for more information and 585s 'citation()' on how to cite R or R packages in publications. 585s 585s Type 'demo()' for some demos, 'help()' for on-line help, or 585s 'help.start()' for an HTML browser interface to help. 585s Type 'q()' to quit R. 585s 585s > library(sp) 585s > library(gstat) 586s > data(meuse) 586s > variogram(log(zinc)~1, ~x+y, meuse) 586s np dist gamma dir.hor dir.ver id 586s 1 57 79.29244 0.1234479 0 0 var1 586s 2 299 163.97367 0.2162185 0 0 var1 586s 3 419 267.36483 0.3027859 0 0 var1 586s 4 457 372.73542 0.4121448 0 0 var1 586s 5 547 478.47670 0.4634128 0 0 var1 586s 6 533 585.34058 0.5646933 0 0 var1 586s 7 574 693.14526 0.5689683 0 0 var1 586s 8 564 796.18365 0.6186769 0 0 var1 586s 9 589 903.14650 0.6471479 0 0 var1 586s 10 543 1011.29177 0.6915705 0 0 var1 586s 11 500 1117.86235 0.7033984 0 0 var1 586s 12 477 1221.32810 0.6038770 0 0 var1 586s 13 452 1329.16407 0.6517158 0 0 var1 586s 14 457 1437.25620 0.5665318 0 0 var1 586s 15 415 1543.20248 0.5748227 0 0 var1 586s > 586s > coordinates(meuse) <- ~ x + y 586s > variogram(log(zinc)~1, meuse) 586s np dist gamma dir.hor dir.ver id 586s 1 57 79.29244 0.1234479 0 0 var1 586s 2 299 163.97367 0.2162185 0 0 var1 586s 3 419 267.36483 0.3027859 0 0 var1 586s 4 457 372.73542 0.4121448 0 0 var1 586s 5 547 478.47670 0.4634128 0 0 var1 586s 6 533 585.34058 0.5646933 0 0 var1 586s 7 574 693.14526 0.5689683 0 0 var1 586s 8 564 796.18365 0.6186769 0 0 var1 586s 9 589 903.14650 0.6471479 0 0 var1 586s 10 543 1011.29177 0.6915705 0 0 var1 586s 11 500 1117.86235 0.7033984 0 0 var1 586s 12 477 1221.32810 0.6038770 0 0 var1 586s 13 452 1329.16407 0.6517158 0 0 var1 586s 14 457 1437.25620 0.5665318 0 0 var1 586s 15 415 1543.20248 0.5748227 0 0 var1 586s > 586s > ind=seq(1,155,2) 586s > var1= meuse[ind,] 586s > var2= meuse[-ind,] 586s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 586s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 586s > v.cross <- variogram(g) 586s > plot(v.cross) 586s > 586s > 586s BEGIN TEST vdist.R 586s 586s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 586s Copyright (C) 2025 The R Foundation for Statistical Computing 586s Platform: arm-unknown-linux-gnueabihf (32-bit) 586s 586s R is free software and comes with ABSOLUTELY NO WARRANTY. 586s You are welcome to redistribute it under certain conditions. 586s Type 'license()' or 'licence()' for distribution details. 586s 586s R is a collaborative project with many contributors. 586s Type 'contributors()' for more information and 586s 'citation()' on how to cite R or R packages in publications. 586s 586s Type 'demo()' for some demos, 'help()' for on-line help, or 586s 'help.start()' for an HTML browser interface to help. 586s Type 'q()' to quit R. 586s 586s > library(sp) 586s > library(gstat) 587s > 587s > data(meuse) 587s > coordinates(meuse) = ~x+y 587s > data(meuse.grid) 587s > gridded(meuse.grid) = ~x+y 587s > 587s > mg = meuse.grid 587s > gridded(mg) = FALSE 587s > mg= mg[1500,] 587s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 587s + vdist=FALSE, maxdist=1000, nmax = 9) 587s [using ordinary kriging] 587s coordinates var1.pred var1.var 587s 1500 (180260, 331300) 5.024413 1.114475 587s > 587s > ## IGNORE_RDIFF_BEGIN 587s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 587s + vdist=TRUE, maxdist=1000, nmax = 9) 587s [using ordinary kriging] 587s coordinates var1.pred var1.var 587s 1500 (180260, 331300) 5.568531 1.112945 587s > ## IGNORE_RDIFF_END 587s > 587s autopkgtest [23:07:18]: test run-unit-test: -----------------------] 591s autopkgtest [23:07:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 591s run-unit-test PASS 595s autopkgtest [23:07:26]: test pkg-r-autopkgtest: preparing testbed 596s Reading package lists... 597s Building dependency tree... 597s Reading state information... 597s Solving dependencies... 597s The following NEW packages will be installed: 597s build-essential cpp cpp-15 cpp-15-arm-linux-gnueabihf 597s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-15 g++-15-arm-linux-gnueabihf 597s g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf 597s gcc-arm-linux-gnueabihf gfortran gfortran-15 gfortran-15-arm-linux-gnueabihf 597s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 597s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-15-dev 597s libgfortran-15-dev 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(15.2.0-12ubuntu1) ... 737s Setting up pkgconf:armhf (1.8.1-4build1) ... 737s Setting up liblapack-dev:armhf (3.12.1-7ubuntu1) ... 737s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 737s Setting up cpp-15 (15.2.0-12ubuntu1) ... 737s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 737s Setting up cpp (4:15.2.0-4ubuntu1) ... 737s Setting up libc6-dev:armhf (2.42-2ubuntu4) ... 737s Setting up libicu-dev:armhf (78.2-1ubuntu1) ... 737s Setting up libbz2-dev:armhf (1.0.8-6build2) ... 737s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 737s Setting up libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 737s Setting up libncurses-dev:armhf (6.6+20251231-1) ... 737s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 737s Setting up libpcre2-dev:armhf (10.46-1) ... 737s Setting up libreadline-dev:armhf (8.3-3) ... 737s Setting up 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(of link group f95) doesn't exist 737s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 737s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 737s Setting up g++ (4:15.2.0-4ubuntu1) ... 737s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 737s Setting up build-essential (12.12ubuntu2) ... 737s Setting up r-base-dev (4.5.2-1ubuntu2) ... 737s Setting up pkg-r-autopkgtest (20250812) ... 737s Processing triggers for libc-bin (2.42-2ubuntu4) ... 737s Processing triggers for man-db (2.13.1-1build1) ... 739s Processing triggers for install-info (7.2-5) ... 747s autopkgtest [23:09:58]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 747s autopkgtest [23:09:58]: test pkg-r-autopkgtest: [----------------------- 748s Test: Try to load the R library gstat 749s 749s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 749s Copyright (C) 2025 The R Foundation for Statistical Computing 749s Platform: arm-unknown-linux-gnueabihf (32-bit) 749s 749s R is free software and comes with ABSOLUTELY NO WARRANTY. 749s You are welcome to redistribute it under certain conditions. 749s Type 'license()' or 'licence()' for distribution details. 749s 749s R is a collaborative project with many contributors. 749s Type 'contributors()' for more information and 749s 'citation()' on how to cite R or R packages in publications. 749s 749s Type 'demo()' for some demos, 'help()' for on-line help, or 749s 'help.start()' for an HTML browser interface to help. 749s Type 'q()' to quit R. 749s 749s > library('gstat') 750s > 750s autopkgtest [23:10:01]: test pkg-r-autopkgtest: -----------------------] 754s pkg-r-autopkgtest PASS 754s autopkgtest [23:10:05]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 758s autopkgtest [23:10:09]: @@@@@@@@@@@@@@@@@@@@ summary 758s run-unit-test PASS 758s pkg-r-autopkgtest PASS