0s autopkgtest [22:52:35]: starting date and time: 2026-02-09 22:52:35+0000 0s autopkgtest [22:52:35]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [22:52:35]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.viyi3244/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-adegraphics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/resolute/armhf 25s autopkgtest [22:53:00]: testbed dpkg architecture: armhf 27s autopkgtest [22:53:02]: testbed apt version: 3.1.15 31s autopkgtest [22:53:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [22:53:08]: testbed release detected to be: None 40s autopkgtest [22:53:15]: updating testbed package index (apt update) 42s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 44s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 44s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 47s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 49s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 49s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 51s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 86s Get:13 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 86s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 89s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 125s Fetched 43.5 MB in 1min 22s (528 kB/s) 126s Reading package lists... 131s autopkgtest [22:54:46]: upgrading testbed (apt dist-upgrade and autopurge) 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Calculating upgrade... 134s The following packages will be upgraded: 134s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 134s libip6tc2 libxtables12 wget 134s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 2407 kB of archives. 134s After this operation, 152 kB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 135s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 135s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 137s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 137s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 138s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 138s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 139s Preconfiguring packages ... 139s Fetched 2407 kB in 4s (560 kB/s) 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 139s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 139s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 139s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 139s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 139s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 139s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 139s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 139s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 139s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 140s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 140s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 140s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 140s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 140s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 140s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 140s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 140s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 140s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 140s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 140s Setting up wget (1.25.0-2ubuntu4) ... 140s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 140s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 140s Setting up dracut-install (109-11ubuntu1) ... 140s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 140s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 140s Setting up iptables (1.8.11-2ubuntu3) ... 140s Setting up iproute2 (6.18.0-1ubuntu1) ... 140s Processing triggers for man-db (2.13.1-1build1) ... 141s Processing triggers for install-info (7.2-5) ... 141s Processing triggers for libc-bin (2.42-2ubuntu4) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s autopkgtest [22:55:01]: rebooting testbed after setup commands that affected boot 187s autopkgtest [22:55:42]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 211s autopkgtest [22:56:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegraphics 230s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (dsc) [2404 B] 230s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (tar) [2847 kB] 230s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (diff) [3500 B] 230s gpgv: Signature made Thu Dec 11 02:52:52 2025 UTC 230s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 230s gpgv: issuer "plessy@debian.org" 230s gpgv: Can't check signature: No public key 230s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegraphics_1.0-22-1.dsc: no acceptable signature found 231s autopkgtest [22:56:26]: testing package r-cran-adegraphics version 1.0-22-1 232s autopkgtest [22:56:27]: build not needed 238s autopkgtest [22:56:33]: test run-unit-test: preparing testbed 239s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Solving dependencies... 240s The following NEW packages will be installed: 240s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 240s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 240s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 240s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 240s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 240s libfreetype6 libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 240s libgeos3.14.1 libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 240s libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 240s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libjbig0 240s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 240s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 240s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 240s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 240s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 240s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 240s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 240s libnlopt0 libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 240s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 240s libpoppler147 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 240s libsnappy1v5 libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data 240s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 240s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 240s libxss1 libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 240s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 240s r-cran-ade4 r-cran-adegraphics r-cran-backports r-cran-base64enc r-cran-boot 240s r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata 240s r-cran-caret r-cran-class r-cran-classint r-cran-cli r-cran-clock 240s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-conquer 240s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 240s r-cran-dbi r-cran-deldir r-cran-deriv r-cran-diagram r-cran-digest 240s r-cran-doby r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi 240s r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach 240s r-cran-forecast r-cran-formula r-cran-fracdiff r-cran-fs r-cran-future 240s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 240s r-cran-glue r-cran-gower r-cran-gtable r-cran-guerry r-cran-hardhat 240s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-interp r-cran-ipred 240s r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 240s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 240s r-cran-latticeextra r-cran-lava r-cran-lifecycle r-cran-listenv 240s r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr 240s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels 240s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark 240s r-cran-mime r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme 240s r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pbkrtest 240s r-cran-pillar r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 240s r-cran-png r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises 240s r-cran-proxy r-cran-purrr r-cran-quadprog r-cran-quantmod r-cran-quantreg 240s r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 240s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-recipes 240s r-cran-reformulas r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rpart 240s r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny 240s r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsevctrs r-cran-spdata 240s r-cran-spdep r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr 240s r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect 240s r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tseries r-cran-ttr 240s r-cran-tzdb r-cran-units r-cran-urca r-cran-utf8 r-cran-vctrs 240s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable 240s r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip x11-common xdg-utils 240s zip 241s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 270 MB of archives. 241s After this operation, 741 MB of additional disk space will be used. 241s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 241s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 243s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 245s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 245s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 245s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.17.1-3ubuntu1 [180 kB] 245s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 247s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 247s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 252s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-data all 3.12.1+dfsg-1 [278 kB] 253s Get:11 http://ftpmaster.internal/ubuntu resolute/universe armhf gdal-plugins armhf 3.12.1+dfsg-1 [26.8 kB] 253s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf javascript-common all 12+nmu1build1 [4864 B] 253s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libabsl20260107 armhf 20260107.0-1 [557 kB] 254s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.5-1 [20.8 kB] 254s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libaom3 armhf 3.13.1-2 [1258 kB] 257s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 257s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 258s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 261s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf libarpack2t64 armhf 3.9.1-6 [88.7 kB] 261s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf libsuperlu7 armhf 7.0.1+dfsg1-2 [157 kB] 261s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf libarmadillo15 armhf 1:15.2.1+dfsg-2 [106 kB] 261s Get:22 http://ftpmaster.internal/ubuntu resolute/universe armhf libdav1d7 armhf 1.5.3-1 [299 kB] 262s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf libgav1-2 armhf 0.20.0-2build1 [330 kB] 262s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu3 [129 kB] 262s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 262s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libyuv0 armhf 0.0.1922.20260106-1 [93.9 kB] 262s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf libavif16 armhf 1.3.0-1ubuntu3 [98.7 kB] 263s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libsnappy1v5 armhf 1.2.2-2 [28.6 kB] 263s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf libblosc1 armhf 1.21.5+ds-2 [23.7 kB] 263s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 263s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 263s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 263s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 263s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 264s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libcfitsio10t64 armhf 4.6.3-1 [505 kB] 265s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 265s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libde265-0 armhf 1.0.16-1build1 [159 kB] 265s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2build1 [38.8 kB] 265s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libfyba0t64 armhf 4.1.1-11build2 [110 kB] 265s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1ubuntu2 [20.4 kB] 265s Get:41 http://ftpmaster.internal/ubuntu resolute/universe armhf libfreexl1 armhf 2.0.0-1build3 [38.1 kB] 265s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos3.14.1 armhf 3.14.1-2 [993 kB] 267s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeos-c1t64 armhf 3.14.1-2 [114 kB] 267s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf proj-data all 9.7.1-1 [7950 kB] 280s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 280s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 281s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 281s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 281s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 281s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf libproj25 armhf 9.7.1-1 [1365 kB] 283s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libgeotiff5 armhf 1.7.4-1build1 [53.0 kB] 283s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libgif7 armhf 5.2.2-1ubuntu3 [32.8 kB] 283s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.5-1 [16.3 kB] 283s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf4-0 armhf 4.3.1-2 [254 kB] 284s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.6+repack-2 [1423 kB] 286s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-aomdec armhf 1.21.2-1 [13.0 kB] 286s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf libheif-plugin-libde265 armhf 1.21.2-1 [13.6 kB] 286s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libheif1 armhf 1.21.2-1 [597 kB] 287s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 287s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libjxl0.11 armhf 0.11.1-6ubuntu1 [1108 kB] 289s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf liburiparser1 armhf 0.9.8+dfsg-2 [30.3 kB] 289s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlbase1t64 armhf 1.3.0-13 [42.4 kB] 289s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmldom1t64 armhf 1.3.0-13 [146 kB] 289s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf libkmlengine1t64 armhf 1.3.0-13 [70.6 kB] 289s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 289s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf libmuparser2v5 armhf 2.3.4-2 [139 kB] 290s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 290s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libmysqlclient24 armhf 8.4.8-0ubuntu1 [1266 kB] 291s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.6+repack-2 [58.9 kB] 291s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf libnetcdf22 armhf 1:4.9.3-1build1 [511 kB] 292s Get:71 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-9 [40.4 kB] 292s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf libodbc2 armhf 2.3.14-1 [147 kB] 292s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf unixodbc-common all 2.3.14-1 [8792 B] 292s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf libodbcinst2 armhf 2.3.14-1 [31.4 kB] 292s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 293s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf libgpgmepp6t64 armhf 1.24.2-3ubuntu2 [115 kB] 293s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf libpoppler147 armhf 25.03.0-11.1 [1046 kB] 294s Get:78 http://ftpmaster.internal/ubuntu resolute/main armhf libpq5 armhf 18.1-2 [137 kB] 294s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 295s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf librttopo1 armhf 1.1.0-4build1 [161 kB] 295s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf libspatialite8t64 armhf 5.1.0-3ubuntu1 [2007 kB] 298s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3build2 [827 kB] 299s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf libgdal38 armhf 3.12.1+dfsg-1 [10.2 MB] 315s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 315s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 316s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 316s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 316s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 316s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 316s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 317s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-d3 all 3.5.17-4build1 [136 kB] 318s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB] 318s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 318s Get:94 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 318s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 319s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 319s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 319s Get:98 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 319s Get:99 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 319s Get:100 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 319s Get:101 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 319s Get:102 http://ftpmaster.internal/ubuntu resolute/main armhf liblua5.4-0 armhf 5.4.8-1 [134 kB] 320s Get:103 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 320s Get:104 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 320s Get:105 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.57.0-1 [218 kB] 321s Get:106 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.57.0-1 [45.2 kB] 321s Get:107 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.57.0-1 [25.3 kB] 321s Get:108 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 321s Get:109 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 321s Get:110 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1build1 [15.3 kB] 321s Get:111 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 323s Get:112 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 323s Get:113 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 323s Get:114 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 325s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-data all 2.2.28-8 [19.3 kB] 325s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf libudunits2-0 armhf 2.2.28-8 [47.6 kB] 325s Get:117 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 325s Get:118 http://ftpmaster.internal/ubuntu resolute/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB] 326s Get:119 http://ftpmaster.internal/ubuntu resolute/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 326s Get:120 http://ftpmaster.internal/ubuntu resolute/universe armhf node-normalize.css all 8.0.1-5.1 [10.4 kB] 326s Get:121 http://ftpmaster.internal/ubuntu resolute/universe armhf pandoc-data all 3.1.11.1-3build1 [78.8 kB] 326s Get:122 http://ftpmaster.internal/ubuntu resolute/universe armhf pandoc armhf 3.1.11.1+ds-4 [36.7 MB] 404s Get:123 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu3 [164 kB] 404s Get:124 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 405s Get:125 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 405s Get:126 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 473s Get:127 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-abind all 1.4-8-1build1 [67.0 kB] 473s Get:128 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 477s Get:129 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pixmap all 0.4-14-1 [217 kB] 478s Get:130 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf r-cran-lattice armhf 0.22-9-1 [1399 kB] 483s Get:131 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sp armhf 1:2.2-0+dfsg-1 [1441 kB] 486s Get:132 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.22-1 [81.0 kB] 487s Get:133 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 487s Get:134 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 492s Get:135 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpparmadillo armhf 15.2.3-1-1 [915 kB] 494s Get:136 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ade4 armhf 1.7-23-1 [5380 kB] 508s Get:137 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-kernsmooth armhf 2.23-26-1build1 [91.4 kB] 509s Get:138 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-png armhf 0.1-8-1build2 [39.8 kB] 509s Get:139 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-jpeg armhf 0.1-10-1 [30.4 kB] 509s Get:140 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 509s Get:141 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-deldir armhf 2.0-4-1build1 [268 kB] 510s Get:142 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 519s Get:143 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcppeigen armhf 0.3.4.0.2-1 [1402 kB] 521s Get:144 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-interp armhf 1.1-6-1 [1414 kB] 524s Get:145 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-latticeextra all 0.6-31-1 [2177 kB] 528s Get:146 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-adegraphics all 1.0-22-1 [3298 kB] 533s Get:147 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-backports armhf 1.5.0-2 [121 kB] 533s Get:148 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-base64enc armhf 0.1-3-3build1 [28.2 kB] 533s Get:149 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-boot all 1.3-32-1 [636 kB] 534s Get:150 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 537s Get:151 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-generics all 0.1.4-1 [84.0 kB] 537s Get:152 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 537s Get:153 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 540s Get:154 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 540s Get:155 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 541s Get:156 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 541s Get:157 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 543s Get:158 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 544s Get:159 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 544s Get:160 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 545s Get:161 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 545s Get:162 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 546s Get:163 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 546s Get:164 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tidyselect armhf 1.2.1+dfsg-1 [222 kB] 546s Get:165 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dplyr armhf 1.1.4-4 [1533 kB] 549s Get:166 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-purrr armhf 1.0.4-1 [550 kB] 550s Get:167 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stringi armhf 1.8.4-1build2 [884 kB] 552s Get:168 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-stringr all 1.5.1-1 [290 kB] 552s Get:169 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cpp11 all 0.5.3-1 [242 kB] 553s Get:170 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tidyr armhf 1.3.1-1 [1152 kB] 554s Get:171 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-broom all 1.0.12+dfsg-1 [1708 kB] 558s Get:172 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fastmap armhf 1.2.0-1 [69.8 kB] 558s Get:173 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cachem armhf 1.1.0-1 [73.8 kB] 558s Get:174 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-digest armhf 0.6.39-1 [211 kB] 559s Get:175 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-htmltools armhf 0.5.8.1-1 [372 kB] 560s Get:176 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 560s Get:177 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-jsonlite armhf 1.9.1+dfsg-1 [440 kB] 561s Get:178 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-memoise all 2.0.1-1build1 [54.5 kB] 561s Get:179 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mime armhf 0.12-2 [35.5 kB] 561s Get:180 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fs armhf 1.6.5+dfsg-1 [242 kB] 561s Get:181 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rappdirs armhf 0.3.3-1build1 [49.3 kB] 561s Get:182 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sass armhf 0.4.9+dfsg-1 [926 kB] 563s Get:183 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 571s Get:184 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cardata all 3.0.6-1 [1687 kB] 574s Get:185 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-formula all 1.2-5-1 [158 kB] 574s Get:186 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nlme armhf 3.1.168-1 [2304 kB] 578s Get:187 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mgcv armhf 1.9-4-1 [3515 kB] 584s Get:188 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nnet armhf 7.3-20-1 [111 kB] 584s Get:189 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-minqa armhf 1.2.8-1 [108 kB] 584s Get:190 http://ftpmaster.internal/ubuntu resolute/universe armhf libnlopt0 armhf 2.7.1-7ubuntu1 [155 kB] 584s Get:191 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nloptr armhf 2.2.1-2 [250 kB] 585s Get:192 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rbibutils armhf 2.3-1 [943 kB] 587s Get:193 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rdpack all 2.6.3-1 [636 kB] 588s Get:194 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-reformulas all 0.4.4-1 [151 kB] 588s Get:195 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-statmod armhf 1.5.0-1 [294 kB] 589s Get:196 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lme4 armhf 1.1-38-1 [4178 kB] 596s Get:197 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-numderiv all 2016.8-1.1-3build1 [116 kB] 596s Get:198 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 597s Get:199 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 600s Get:200 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 602s Get:201 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 602s Get:202 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.3-1 [1088 kB] 605s Get:203 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.4.0-1 [725 kB] 606s Get:204 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 614s Get:205 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 615s Get:206 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-deriv all 4.2.0-1 [154 kB] 615s Get:207 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-colorspace armhf 2.1-1+dfsg-1 [1561 kB] 617s Get:208 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fracdiff armhf 1.5-3-1 [105 kB] 618s Get:209 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-zoo armhf 1.8-15-1 [1025 kB] 619s Get:210 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lmtest armhf 0.9.40-1build1 [400 kB] 620s Get:211 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-timedate armhf 4052.112-1 [1299 kB] 622s Get:212 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-quadprog armhf 1.5-8-1build2 [29.8 kB] 622s Get:213 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xts armhf 0.14.1-1 [1181 kB] 624s Get:214 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-curl armhf 7.0.0+dfsg-1 [200 kB] 625s Get:215 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ttr armhf 0.24.4-1 [509 kB] 626s Get:216 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-quantmod all 0.4.28-1 [1037 kB] 628s Get:217 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tseries armhf 0.10-59-3 [379 kB] 628s Get:218 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-urca armhf 1.3-4-1build1 [1050 kB] 630s Get:219 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-forecast armhf 8.23.0-1 [1563 kB] 633s Get:220 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-modelr all 0.1.11-1 [195 kB] 633s Get:221 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-microbenchmark armhf 1.5.0-1 [67.8 kB] 634s Get:222 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-doby all 4.7.1-3 [4741 kB] 642s Get:223 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-evaluate all 1.0.5-1 [117 kB] 642s Get:224 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xfun armhf 0.55+dfsg-1 [589 kB] 643s Get:225 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-highr all 0.11+dfsg-1 [38.5 kB] 643s Get:226 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-yaml armhf 2.3.10-1 [101 kB] 644s Get:227 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 659s Get:228 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-knitr all 1.51+dfsg-1 [847 kB] 663s Get:229 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pbkrtest all 0.5.5-1 [217 kB] 664s Get:230 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sparsem armhf 1.84-2-1 [807 kB] 667s Get:231 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrixmodels all 0.5-4-1 [351 kB] 669s Get:232 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-survival armhf 3.8-6-1 [8253 kB] 713s Get:233 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrixstats armhf 1.5.0-1 [495 kB] 714s Get:234 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-class armhf 7.3-23-1 [88.8 kB] 714s Get:235 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 715s Get:236 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-e1071 armhf 1.7-17-1 [570 kB] 716s Get:237 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1build1 [91.1 kB] 716s Get:238 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-iterators all 1.0.14-1build1 [336 kB] 717s Get:239 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-foreach all 1.5.2-1build1 [124 kB] 717s Get:240 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-data.table armhf 1.17.0+dfsg-1 [2111 kB] 721s Get:241 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-modelmetrics armhf 1.2.2.2-1build2 [152 kB] 722s Get:242 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-plyr armhf 1.8.9-1 [832 kB] 723s Get:243 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-proc armhf 1.18.5-1 [961 kB] 726s Get:244 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tzdb armhf 0.5.0-1 [530 kB] 728s Get:245 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-clock armhf 0.7.2-1 [1858 kB] 733s Get:246 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gower armhf 1.0.2-1 [208 kB] 733s Get:247 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sparsevctrs armhf 0.2.0-2 [168 kB] 733s Get:248 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-hardhat all 1.4.2+dfsg-1 [596 kB] 735s Get:249 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rpart armhf 4.1.24-1build1 [661 kB] 736s Get:250 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-shape all 1.4.6.1-1 [749 kB] 737s Get:251 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-diagram all 1.6.5-2 [656 kB] 739s Get:252 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-globals all 0.19.0-1 [160 kB] 739s Get:253 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 740s Get:254 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-parallelly armhf 1.42.0-1 [540 kB] 741s Get:255 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future all 1.34.0+dfsg-1 [646 kB] 742s Get:256 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 742s Get:257 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-progressr all 0.15.1-1 [353 kB] 743s Get:258 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-squarem all 2021.1-1build1 [180 kB] 744s Get:259 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lava all 1.8.2+dfsg-1 [2210 kB] 748s Get:260 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-prodlim armhf 2024.06.25-1 [413 kB] 749s Get:261 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ipred armhf 0.9-15-1 [385 kB] 750s Get:262 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-timechange armhf 0.3.0-2 [184 kB] 750s Get:263 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lubridate armhf 1.9.4+dfsg-1 [1008 kB] 752s Get:264 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 756s Get:265 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-reshape2 armhf 1.4.4-2build2 [119 kB] 756s Get:266 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-caret armhf 7.0-1+dfsg-1 [3460 kB] 763s Get:267 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-conquer armhf 1.3.3-1 [460 kB] 764s Get:268 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-quantreg armhf 6.1-1 [1428 kB] 767s Get:269 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-car all 3.1-5-1 [1526 kB] 770s Get:270 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-classint armhf 0.4-11+dfsg-1 [108 kB] 770s Get:271 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-commonmark armhf 1.9.5-1 [112 kB] 770s Get:272 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-crayon all 1.5.3-1 [165 kB] 771s Get:273 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-dbi all 1.2.3-1build1 [855 kB] 772s Get:274 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fontawesome all 0.5.3-1 [1331 kB] 774s Get:275 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-guerry all 1.8.3-1 [1230 kB] 776s Get:276 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-later armhf 1.4.1+dfsg-1 [141 kB] 777s Get:277 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-promises armhf 1.3.2+dfsg-1 [288 kB] 777s Get:278 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-httpuv armhf 1.6.15+dfsg-1 [480 kB] 778s Get:279 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-markdown all 1.13-1 [162 kB] 778s Get:280 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tinytex all 0.58-1 [148 kB] 779s Get:281 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-modernizr all 3.13.0-0.1build1 [100 kB] 779s Get:282 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-xtable all 1:1.8-4-2build1 [691 kB] 780s Get:283 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sourcetools armhf 0.1.7-1-1 [45.7 kB] 780s Get:284 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 780s Get:285 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 785s Get:286 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 788s Get:287 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-wk armhf 0.9.4-1 [1785 kB] 792s Get:288 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-s2 armhf 1.1.9-1build1 [1738 kB] 795s Get:289 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-units armhf 0.8-7+dfsg-2 [292 kB] 796s Get:290 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sf armhf 1.0-19+dfsg-2build2 [3265 kB] 803s Get:291 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spdata all 2.3.4-1 [3684 kB] 812s Get:292 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-spdep armhf 1.3-5+dfsg-1 [2164 kB] 817s Preconfiguring packages ... 817s Fetched 270 MB in 9min 36s (468 kB/s) 817s Selecting previously unselected package libfreetype6:armhf. 817s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68686 files and directories currently installed.) 817s Preparing to unpack .../000-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 817s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 817s Selecting previously unselected package fonts-dejavu-mono. 817s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8build1_all.deb ... 817s Unpacking fonts-dejavu-mono (2.37-8build1) ... 817s Selecting previously unselected package fonts-dejavu-core. 817s Preparing to unpack .../002-fonts-dejavu-core_2.37-8build1_all.deb ... 817s Unpacking fonts-dejavu-core (2.37-8build1) ... 817s Selecting previously unselected package fontconfig-config. 817s Preparing to unpack .../003-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 818s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package libfontconfig1:armhf. 818s Preparing to unpack .../004-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 818s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package fontconfig. 818s Preparing to unpack .../005-fontconfig_2.17.1-3ubuntu1_armhf.deb ... 818s Unpacking fontconfig (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package fonts-font-awesome. 818s Preparing to unpack .../006-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 818s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 818s Selecting previously unselected package fonts-glyphicons-halflings. 818s Preparing to unpack .../007-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 818s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 818s Selecting previously unselected package fonts-mathjax. 818s Preparing to unpack .../008-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 818s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 818s Selecting previously unselected package gdal-data. 818s Preparing to unpack .../009-gdal-data_3.12.1+dfsg-1_all.deb ... 818s Unpacking gdal-data (3.12.1+dfsg-1) ... 818s Selecting previously unselected package gdal-plugins:armhf. 818s Preparing to unpack .../010-gdal-plugins_3.12.1+dfsg-1_armhf.deb ... 818s Unpacking gdal-plugins:armhf (3.12.1+dfsg-1) ... 818s Selecting previously unselected package javascript-common. 818s Preparing to unpack .../011-javascript-common_12+nmu1build1_all.deb ... 818s Unpacking javascript-common (12+nmu1build1) ... 818s Selecting previously unselected package libabsl20260107:armhf. 818s Preparing to unpack .../012-libabsl20260107_20260107.0-1_armhf.deb ... 818s Unpacking libabsl20260107:armhf (20260107.0-1) ... 818s Selecting previously unselected package libaec0:armhf. 818s Preparing to unpack .../013-libaec0_1.1.5-1_armhf.deb ... 818s Unpacking libaec0:armhf (1.1.5-1) ... 818s Selecting previously unselected package libaom3:armhf. 818s Preparing to unpack .../014-libaom3_3.13.1-2_armhf.deb ... 818s Unpacking libaom3:armhf (3.13.1-2) ... 818s Selecting previously unselected package libblas3:armhf. 818s Preparing to unpack .../015-libblas3_3.12.1-7ubuntu1_armhf.deb ... 818s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 818s Selecting previously unselected package libgfortran5:armhf. 818s Preparing to unpack .../016-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 818s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package liblapack3:armhf. 818s Preparing to unpack .../017-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 818s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 818s Selecting previously unselected package libarpack2t64:armhf. 818s Preparing to unpack .../018-libarpack2t64_3.9.1-6_armhf.deb ... 818s Unpacking libarpack2t64:armhf (3.9.1-6) ... 818s Selecting previously unselected package libsuperlu7:armhf. 818s Preparing to unpack .../019-libsuperlu7_7.0.1+dfsg1-2_armhf.deb ... 818s Unpacking libsuperlu7:armhf (7.0.1+dfsg1-2) ... 818s Selecting previously unselected package libarmadillo15. 818s Preparing to unpack .../020-libarmadillo15_1%3a15.2.1+dfsg-2_armhf.deb ... 818s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 818s Selecting previously unselected package libdav1d7:armhf. 818s Preparing to unpack .../021-libdav1d7_1.5.3-1_armhf.deb ... 818s Unpacking libdav1d7:armhf (1.5.3-1) ... 818s Selecting previously unselected package libgav1-2:armhf. 818s Preparing to unpack .../022-libgav1-2_0.20.0-2build1_armhf.deb ... 818s Unpacking libgav1-2:armhf (0.20.0-2build1) ... 819s Selecting previously unselected package libjpeg-turbo8:armhf. 819s Preparing to unpack .../023-libjpeg-turbo8_2.1.5-4ubuntu3_armhf.deb ... 819s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 819s Selecting previously unselected package libjpeg8:armhf. 819s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_armhf.deb ... 819s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 819s Selecting previously unselected package libyuv0:armhf. 819s Preparing to unpack .../025-libyuv0_0.0.1922.20260106-1_armhf.deb ... 819s Unpacking libyuv0:armhf (0.0.1922.20260106-1) ... 819s Selecting previously unselected package libavif16:armhf. 819s Preparing to unpack .../026-libavif16_1.3.0-1ubuntu3_armhf.deb ... 819s Unpacking libavif16:armhf (1.3.0-1ubuntu3) ... 819s Selecting previously unselected package libsnappy1v5:armhf. 819s Preparing to unpack .../027-libsnappy1v5_1.2.2-2_armhf.deb ... 819s Unpacking libsnappy1v5:armhf (1.2.2-2) ... 819s Selecting previously unselected package libblosc1:armhf. 819s Preparing to unpack .../028-libblosc1_1.21.5+ds-2_armhf.deb ... 819s Unpacking libblosc1:armhf (1.21.5+ds-2) ... 819s Selecting previously unselected package libpixman-1-0:armhf. 819s Preparing to unpack .../029-libpixman-1-0_0.46.4-1_armhf.deb ... 819s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 819s Selecting previously unselected package libxcb-render0:armhf. 819s Preparing to unpack .../030-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 819s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 819s Selecting previously unselected package libxcb-shm0:armhf. 819s Preparing to unpack .../031-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 819s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 819s Selecting previously unselected package libxrender1:armhf. 819s Preparing to unpack .../032-libxrender1_1%3a0.9.12-1_armhf.deb ... 819s Unpacking libxrender1:armhf (1:0.9.12-1) ... 819s Selecting previously unselected package libcairo2:armhf. 819s Preparing to unpack .../033-libcairo2_1.18.4-3_armhf.deb ... 819s Unpacking libcairo2:armhf (1.18.4-3) ... 819s Selecting previously unselected package libcfitsio10t64:armhf. 819s Preparing to unpack .../034-libcfitsio10t64_4.6.3-1_armhf.deb ... 819s Unpacking libcfitsio10t64:armhf (4.6.3-1) ... 819s Selecting previously unselected package libdatrie1:armhf. 819s Preparing to unpack .../035-libdatrie1_0.2.14-1_armhf.deb ... 819s Unpacking libdatrie1:armhf (0.2.14-1) ... 819s Selecting previously unselected package libde265-0:armhf. 819s Preparing to unpack .../036-libde265-0_1.0.16-1build1_armhf.deb ... 819s Unpacking libde265-0:armhf (1.0.16-1build1) ... 819s Selecting previously unselected package libdeflate0:armhf. 819s Preparing to unpack .../037-libdeflate0_1.23-2build1_armhf.deb ... 819s Unpacking libdeflate0:armhf (1.23-2build1) ... 819s Selecting previously unselected package libfyba0t64:armhf. 819s Preparing to unpack .../038-libfyba0t64_4.1.1-11build2_armhf.deb ... 819s Unpacking libfyba0t64:armhf (4.1.1-11build2) ... 819s Selecting previously unselected package libminizip1t64:armhf. 819s Preparing to unpack .../039-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 819s Unpacking libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 819s Selecting previously unselected package libfreexl1:armhf. 819s Preparing to unpack .../040-libfreexl1_2.0.0-1build3_armhf.deb ... 819s Unpacking libfreexl1:armhf (2.0.0-1build3) ... 819s Selecting previously unselected package libgeos3.14.1:armhf. 819s Preparing to unpack .../041-libgeos3.14.1_3.14.1-2_armhf.deb ... 819s Unpacking libgeos3.14.1:armhf (3.14.1-2) ... 819s Selecting previously unselected package libgeos-c1t64:armhf. 819s Preparing to unpack .../042-libgeos-c1t64_3.14.1-2_armhf.deb ... 819s Unpacking libgeos-c1t64:armhf (3.14.1-2) ... 819s Selecting previously unselected package proj-data. 819s Preparing to unpack .../043-proj-data_9.7.1-1_all.deb ... 819s Unpacking proj-data (9.7.1-1) ... 819s Selecting previously unselected package libjbig0:armhf. 819s Preparing to unpack .../044-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 819s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 819s Selecting previously unselected package liblerc4:armhf. 819s Preparing to unpack .../045-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 819s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 819s Selecting previously unselected package libsharpyuv0:armhf. 819s Preparing to unpack .../046-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 819s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 819s Selecting previously unselected package libwebp7:armhf. 819s Preparing to unpack .../047-libwebp7_1.5.0-0.1build1_armhf.deb ... 819s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 820s Selecting previously unselected package libtiff6:armhf. 820s Preparing to unpack .../048-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 820s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 820s Selecting previously unselected package libproj25:armhf. 820s Preparing to unpack .../049-libproj25_9.7.1-1_armhf.deb ... 820s Unpacking libproj25:armhf (9.7.1-1) ... 820s Selecting previously unselected package libgeotiff5:armhf. 820s Preparing to unpack .../050-libgeotiff5_1.7.4-1build1_armhf.deb ... 820s Unpacking libgeotiff5:armhf (1.7.4-1build1) ... 820s Selecting previously unselected package libgif7:armhf. 820s Preparing to unpack .../051-libgif7_5.2.2-1ubuntu3_armhf.deb ... 820s Unpacking libgif7:armhf (5.2.2-1ubuntu3) ... 820s Selecting previously unselected package libsz2:armhf. 820s Preparing to unpack .../052-libsz2_1.1.5-1_armhf.deb ... 820s Unpacking libsz2:armhf (1.1.5-1) ... 820s Selecting previously unselected package libhdf4-0:armhf. 820s Preparing to unpack .../053-libhdf4-0_4.3.1-2_armhf.deb ... 820s Unpacking libhdf4-0:armhf (4.3.1-2) ... 820s Selecting previously unselected package libhdf5-310:armhf. 820s Preparing to unpack .../054-libhdf5-310_1.14.6+repack-2_armhf.deb ... 820s Unpacking libhdf5-310:armhf (1.14.6+repack-2) ... 820s Selecting previously unselected package libheif-plugin-aomdec:armhf. 820s Preparing to unpack .../055-libheif-plugin-aomdec_1.21.2-1_armhf.deb ... 820s Unpacking libheif-plugin-aomdec:armhf (1.21.2-1) ... 820s Selecting previously unselected package libheif-plugin-libde265:armhf. 820s Preparing to unpack .../056-libheif-plugin-libde265_1.21.2-1_armhf.deb ... 820s Unpacking libheif-plugin-libde265:armhf (1.21.2-1) ... 820s Selecting previously unselected package libheif1:armhf. 820s Preparing to unpack .../057-libheif1_1.21.2-1_armhf.deb ... 820s Unpacking libheif1:armhf (1.21.2-1) ... 820s Selecting previously unselected package liblcms2-2:armhf. 820s Preparing to unpack .../058-liblcms2-2_2.17-1_armhf.deb ... 820s Unpacking liblcms2-2:armhf (2.17-1) ... 820s Selecting previously unselected package libjxl0.11:armhf. 820s Preparing to unpack .../059-libjxl0.11_0.11.1-6ubuntu1_armhf.deb ... 820s Unpacking libjxl0.11:armhf (0.11.1-6ubuntu1) ... 820s Selecting previously unselected package liburiparser1:armhf. 820s Preparing to unpack .../060-liburiparser1_0.9.8+dfsg-2_armhf.deb ... 820s Unpacking liburiparser1:armhf (0.9.8+dfsg-2) ... 820s Selecting previously unselected package libkmlbase1t64:armhf. 820s Preparing to unpack .../061-libkmlbase1t64_1.3.0-13_armhf.deb ... 820s Unpacking libkmlbase1t64:armhf (1.3.0-13) ... 820s Selecting previously unselected package libkmldom1t64:armhf. 820s Preparing to unpack .../062-libkmldom1t64_1.3.0-13_armhf.deb ... 820s Unpacking libkmldom1t64:armhf (1.3.0-13) ... 820s Selecting previously unselected package libkmlengine1t64:armhf. 820s Preparing to unpack .../063-libkmlengine1t64_1.3.0-13_armhf.deb ... 820s Unpacking libkmlengine1t64:armhf (1.3.0-13) ... 820s Selecting previously unselected package libgomp1:armhf. 820s Preparing to unpack .../064-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 820s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 820s Selecting previously unselected package libmuparser2v5:armhf. 820s Preparing to unpack .../065-libmuparser2v5_2.3.4-2_armhf.deb 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Preparing to unpack .../076-libpoppler147_25.03.0-11.1_armhf.deb ... 821s Unpacking libpoppler147:armhf (25.03.0-11.1) ... 821s Selecting previously unselected package libpq5:armhf. 821s Preparing to unpack .../077-libpq5_18.1-2_armhf.deb ... 821s Unpacking libpq5:armhf (18.1-2) ... 821s Selecting previously unselected package libqhull-r8.0:armhf. 821s Preparing to unpack .../078-libqhull-r8.0_2020.2-8_armhf.deb ... 821s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 821s Selecting previously unselected package librttopo1:armhf. 821s Preparing to unpack .../079-librttopo1_1.1.0-4build1_armhf.deb ... 821s Unpacking librttopo1:armhf (1.1.0-4build1) ... 821s Selecting previously unselected package libspatialite8t64:armhf. 821s Preparing to unpack .../080-libspatialite8t64_5.1.0-3ubuntu1_armhf.deb ... 821s Unpacking libspatialite8t64:armhf (5.1.0-3ubuntu1) ... 821s Selecting previously unselected package libxerces-c3.2t64:armhf. 821s Preparing to unpack .../081-libxerces-c3.2t64_3.2.4+debian-1.3build2_armhf.deb ... 821s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3build2) ... 821s Selecting previously unselected package libgdal38:armhf. 821s Preparing to unpack .../082-libgdal38_3.12.1+dfsg-1_armhf.deb ... 821s Unpacking libgdal38:armhf (3.12.1+dfsg-1) ... 821s Selecting previously unselected package libgraphite2-3:armhf. 821s Preparing to unpack .../083-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 821s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 821s Selecting previously unselected package libharfbuzz0b:armhf. 821s Preparing to unpack .../084-libharfbuzz0b_12.3.2-1_armhf.deb ... 821s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 821s Selecting previously unselected package x11-common. 821s Preparing to unpack .../085-x11-common_1%3a7.7+24ubuntu1_all.deb ... 821s Unpacking x11-common (1:7.7+24ubuntu1) ... 821s Selecting previously unselected package libice6:armhf. 821s Preparing to unpack .../086-libice6_2%3a1.1.1-1build1_armhf.deb ... 821s Unpacking libice6:armhf (2:1.1.1-1build1) ... 821s Selecting previously unselected package libjs-bootstrap. 821s Preparing to unpack .../087-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 821s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 821s Selecting previously unselected package libjs-popper.js. 821s Preparing to unpack .../088-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 822s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 822s Selecting previously unselected package libjs-bootstrap4. 822s Preparing to unpack .../089-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 822s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 822s Selecting previously unselected package libjs-d3. 822s Preparing to unpack .../090-libjs-d3_3.5.17-4build1_all.deb ... 822s Unpacking libjs-d3 (3.5.17-4build1) ... 822s Selecting previously unselected package libjs-es5-shim. 822s Preparing to unpack .../091-libjs-es5-shim_4.6.7-2_all.deb ... 822s Unpacking libjs-es5-shim 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libjs-microplugin.js (0.0.3+dfsg-2) ... 822s Selecting previously unselected package libjs-jquery-selectize.js. 822s Preparing to unpack .../097-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 822s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 822s Selecting previously unselected package libjs-jquery-ui. 822s Preparing to unpack .../098-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 822s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 822s Selecting previously unselected package libjs-json. 822s Preparing to unpack .../099-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 822s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 822s Selecting previously unselected package libjs-prettify. 822s Preparing to unpack .../100-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 822s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 822s Selecting previously unselected package liblua5.4-0:armhf. 822s Preparing to unpack .../101-liblua5.4-0_5.4.8-1_armhf.deb ... 822s Unpacking liblua5.4-0:armhf (5.4.8-1) ... 822s Selecting previously unselected package libthai-data. 822s Preparing to unpack .../102-libthai-data_0.1.30-1_all.deb ... 822s Unpacking libthai-data (0.1.30-1) ... 822s Selecting previously unselected package libthai0:armhf. 822s Preparing to unpack .../103-libthai0_0.1.30-1_armhf.deb ... 822s Unpacking libthai0:armhf (0.1.30-1) ... 822s Selecting previously unselected package libpango-1.0-0:armhf. 822s Preparing to unpack .../104-libpango-1.0-0_1.57.0-1_armhf.deb ... 822s Unpacking libpango-1.0-0:armhf (1.57.0-1) ... 822s Selecting previously unselected package libpangoft2-1.0-0:armhf. 822s Preparing to unpack .../105-libpangoft2-1.0-0_1.57.0-1_armhf.deb ... 822s Unpacking libpangoft2-1.0-0:armhf (1.57.0-1) ... 822s Selecting previously unselected package libpangocairo-1.0-0:armhf. 822s Preparing to unpack .../106-libpangocairo-1.0-0_1.57.0-1_armhf.deb ... 822s Unpacking libpangocairo-1.0-0:armhf (1.57.0-1) ... 822s Selecting previously unselected package libpaper2:armhf. 822s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_armhf.deb ... 822s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 822s Selecting previously unselected package libpaper-utils. 822s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 822s Unpacking libpaper-utils (2.2.5-0.3build1) ... 822s Selecting previously unselected package libsm6:armhf. 822s Preparing to unpack .../109-libsm6_2%3a1.2.6-1build1_armhf.deb ... 822s Unpacking libsm6:armhf (2:1.2.6-1build1) ... 822s Selecting previously unselected package libtcl8.6:armhf. 822s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 823s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 823s Selecting previously unselected package libxft2:armhf. 823s Preparing to unpack .../111-libxft2_2.3.6-1build2_armhf.deb ... 823s Unpacking libxft2:armhf (2.3.6-1build2) ... 823s Selecting previously unselected package libxss1:armhf. 823s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build4_armhf.deb ... 823s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 823s Selecting previously unselected package libtk8.6:armhf. 823s Preparing to unpack .../113-libtk8.6_8.6.17-1_armhf.deb ... 823s Unpacking libtk8.6:armhf (8.6.17-1) ... 823s Selecting previously unselected package libudunits2-data. 823s Preparing to unpack .../114-libudunits2-data_2.2.28-8_all.deb ... 823s Unpacking libudunits2-data (2.2.28-8) ... 823s Selecting previously unselected package libudunits2-0:armhf. 823s Preparing to unpack .../115-libudunits2-0_2.2.28-8_armhf.deb ... 823s Unpacking libudunits2-0:armhf (2.2.28-8) ... 823s Selecting previously unselected package libxt6t64:armhf. 823s Preparing to unpack .../116-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 823s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 823s Selecting previously unselected package node-bootstrap-sass. 823s Preparing to unpack .../117-node-bootstrap-sass_3.4.3-2_all.deb ... 823s Unpacking node-bootstrap-sass (3.4.3-2) ... 823s Selecting previously unselected package node-html5shiv. 823s Preparing to unpack .../118-node-html5shiv_3.7.3+dfsg-5_all.deb ... 823s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 823s Selecting previously unselected package node-normalize.css. 823s Preparing to unpack .../119-node-normalize.css_8.0.1-5.1_all.deb ... 823s Unpacking node-normalize.css (8.0.1-5.1) ... 823s Selecting previously unselected package pandoc-data. 823s Preparing to unpack .../120-pandoc-data_3.1.11.1-3build1_all.deb ... 823s Unpacking pandoc-data (3.1.11.1-3build1) ... 823s Selecting previously unselected package pandoc. 823s Preparing to unpack .../121-pandoc_3.1.11.1+ds-4_armhf.deb ... 823s Unpacking pandoc (3.1.11.1+ds-4) ... 824s Selecting previously unselected package zip. 824s Preparing to unpack .../122-zip_3.0-15ubuntu3_armhf.deb ... 824s Unpacking zip (3.0-15ubuntu3) ... 824s Selecting previously unselected package unzip. 824s Preparing to unpack .../123-unzip_6.0-29ubuntu1_armhf.deb ... 824s Unpacking unzip (6.0-29ubuntu1) ... 824s Selecting previously unselected package xdg-utils. 824s Preparing to unpack .../124-xdg-utils_1.2.1-2ubuntu2_all.deb ... 824s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 824s Selecting previously unselected package r-base-core. 824s Preparing to unpack .../125-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 824s Unpacking r-base-core (4.5.2-1ubuntu2) ... 825s Selecting previously unselected package r-cran-abind. 825s Preparing to unpack .../126-r-cran-abind_1.4-8-1build1_all.deb ... 825s Unpacking r-cran-abind (1.4-8-1build1) ... 825s Selecting previously unselected package r-cran-mass. 825s Preparing to unpack .../127-r-cran-mass_7.3-65-1_armhf.deb ... 825s Unpacking r-cran-mass (7.3-65-1) ... 825s Selecting previously unselected package r-cran-pixmap. 825s Preparing to unpack .../128-r-cran-pixmap_0.4-14-1_all.deb ... 825s Unpacking r-cran-pixmap (0.4-14-1) ... 825s Selecting previously unselected package r-cran-lattice. 825s Preparing to unpack .../129-r-cran-lattice_0.22-9-1_armhf.deb ... 825s Unpacking r-cran-lattice (0.22-9-1) ... 825s Selecting previously unselected package r-cran-sp. 825s Preparing to unpack .../130-r-cran-sp_1%3a2.2-0+dfsg-1_armhf.deb ... 825s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 825s Selecting previously unselected package r-cran-littler. 825s Preparing to unpack .../131-r-cran-littler_0.3.22-1_armhf.deb ... 825s Unpacking r-cran-littler (0.3.22-1) ... 825s Selecting previously unselected package r-cran-pkgkitten. 825s Preparing to unpack .../132-r-cran-pkgkitten_0.2.4-1_all.deb ... 825s Unpacking r-cran-pkgkitten (0.2.4-1) ... 825s Selecting previously unselected package r-cran-rcpp. 825s Preparing to unpack .../133-r-cran-rcpp_1.1.0-1_armhf.deb ... 825s Unpacking r-cran-rcpp (1.1.0-1) ... 825s Selecting previously unselected package r-cran-rcpparmadillo. 825s Preparing to unpack .../134-r-cran-rcpparmadillo_15.2.3-1-1_armhf.deb ... 825s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ... 825s Selecting previously unselected package r-cran-ade4. 826s Preparing to unpack .../135-r-cran-ade4_1.7-23-1_armhf.deb ... 826s Unpacking r-cran-ade4 (1.7-23-1) ... 826s Selecting previously unselected package r-cran-kernsmooth. 826s Preparing to unpack .../136-r-cran-kernsmooth_2.23-26-1build1_armhf.deb ... 826s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 826s Selecting previously unselected package r-cran-png. 826s Preparing to unpack .../137-r-cran-png_0.1-8-1build2_armhf.deb ... 826s Unpacking r-cran-png (0.1-8-1build2) ... 826s Selecting previously unselected package r-cran-jpeg. 826s Preparing to unpack .../138-r-cran-jpeg_0.1-10-1_armhf.deb ... 826s Unpacking r-cran-jpeg (0.1-10-1) ... 826s Selecting previously unselected package r-cran-rcolorbrewer. 826s Preparing to unpack .../139-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 826s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 826s Selecting previously unselected package r-cran-deldir. 826s Preparing to unpack .../140-r-cran-deldir_2.0-4-1build1_armhf.deb ... 826s Unpacking r-cran-deldir (2.0-4-1build1) ... 826s Selecting previously unselected package r-cran-matrix. 826s Preparing to unpack .../141-r-cran-matrix_1.7-4-1_armhf.deb ... 826s Unpacking r-cran-matrix (1.7-4-1) ... 826s Selecting previously unselected package r-cran-rcppeigen. 826s Preparing to unpack .../142-r-cran-rcppeigen_0.3.4.0.2-1_armhf.deb ... 826s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 826s Selecting previously unselected package r-cran-interp. 826s Preparing to unpack .../143-r-cran-interp_1.1-6-1_armhf.deb ... 826s Unpacking r-cran-interp (1.1-6-1) ... 826s Selecting previously unselected package r-cran-latticeextra. 826s Preparing to unpack .../144-r-cran-latticeextra_0.6-31-1_all.deb ... 826s Unpacking r-cran-latticeextra (0.6-31-1) ... 826s Selecting previously unselected package r-cran-adegraphics. 826s Preparing to unpack .../145-r-cran-adegraphics_1.0-22-1_all.deb ... 826s Unpacking r-cran-adegraphics (1.0-22-1) ... 826s Selecting previously unselected package r-cran-backports. 826s Preparing to unpack .../146-r-cran-backports_1.5.0-2_armhf.deb ... 826s Unpacking r-cran-backports (1.5.0-2) ... 826s Selecting previously unselected package r-cran-base64enc. 826s Preparing to unpack .../147-r-cran-base64enc_0.1-3-3build1_armhf.deb ... 826s Unpacking r-cran-base64enc (0.1-3-3build1) ... 826s Selecting previously unselected package r-cran-boot. 826s Preparing to unpack .../148-r-cran-boot_1.3-32-1_all.deb ... 826s Unpacking r-cran-boot (1.3-32-1) ... 826s Selecting previously unselected package r-cran-cli. 826s Preparing to unpack .../149-r-cran-cli_3.6.4-1_armhf.deb ... 826s Unpacking r-cran-cli (3.6.4-1) ... 826s Selecting previously unselected package r-cran-generics. 826s Preparing to unpack .../150-r-cran-generics_0.1.4-1_all.deb ... 826s Unpacking r-cran-generics (0.1.4-1) ... 826s Selecting previously unselected package r-cran-glue. 826s Preparing to unpack .../151-r-cran-glue_1.8.0-1_armhf.deb ... 826s Unpacking r-cran-glue (1.8.0-1) ... 827s Selecting previously unselected package r-cran-rlang. 827s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_armhf.deb ... 827s Unpacking r-cran-rlang (1.1.5-3) ... 827s Selecting previously unselected package r-cran-lifecycle. 827s Preparing to unpack .../153-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 827s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 827s Selecting previously unselected package r-cran-magrittr. 827s Preparing to unpack .../154-r-cran-magrittr_2.0.3-1_armhf.deb ... 827s Unpacking r-cran-magrittr (2.0.3-1) ... 827s Selecting previously unselected package r-cran-utf8. 827s Preparing to unpack .../155-r-cran-utf8_1.2.4-1_armhf.deb ... 827s Unpacking r-cran-utf8 (1.2.4-1) ... 827s Selecting previously unselected package r-cran-vctrs. 827s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_armhf.deb ... 827s Unpacking r-cran-vctrs (0.6.5-1) ... 827s Selecting previously unselected package r-cran-pillar. 827s Preparing to unpack .../157-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 827s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 827s Selecting previously unselected package r-cran-r6. 827s Preparing to unpack .../158-r-cran-r6_2.6.1-1_all.deb ... 827s Unpacking r-cran-r6 (2.6.1-1) ... 827s Selecting previously unselected package r-cran-fansi. 827s Preparing to unpack .../159-r-cran-fansi_1.0.6-2_armhf.deb ... 827s Unpacking r-cran-fansi (1.0.6-2) ... 827s Selecting previously unselected package r-cran-pkgconfig. 827s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 827s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 827s Selecting previously unselected package r-cran-tibble. 827s Preparing to unpack .../161-r-cran-tibble_3.2.1+dfsg-3_armhf.deb ... 827s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 827s Selecting previously unselected package r-cran-withr. 827s Preparing to unpack .../162-r-cran-withr_3.0.2+dfsg-1_all.deb ... 827s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 827s Selecting previously unselected package r-cran-tidyselect. 827s Preparing to unpack .../163-r-cran-tidyselect_1.2.1+dfsg-1_armhf.deb ... 827s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 827s Selecting previously unselected package r-cran-dplyr. 827s Preparing to unpack .../164-r-cran-dplyr_1.1.4-4_armhf.deb ... 827s Unpacking r-cran-dplyr (1.1.4-4) ... 827s Selecting previously unselected package r-cran-purrr. 827s Preparing to unpack .../165-r-cran-purrr_1.0.4-1_armhf.deb ... 827s Unpacking r-cran-purrr (1.0.4-1) ... 827s Selecting previously unselected package r-cran-stringi. 827s Preparing to unpack .../166-r-cran-stringi_1.8.4-1build2_armhf.deb ... 827s Unpacking r-cran-stringi (1.8.4-1build2) ... 827s Selecting previously unselected package r-cran-stringr. 827s Preparing to unpack .../167-r-cran-stringr_1.5.1-1_all.deb ... 827s Unpacking r-cran-stringr (1.5.1-1) ... 827s Selecting previously unselected package r-cran-cpp11. 827s Preparing to unpack .../168-r-cran-cpp11_0.5.3-1_all.deb ... 827s Unpacking r-cran-cpp11 (0.5.3-1) ... 827s Selecting previously unselected package r-cran-tidyr. 827s Preparing to unpack .../169-r-cran-tidyr_1.3.1-1_armhf.deb ... 827s Unpacking r-cran-tidyr (1.3.1-1) ... 827s Selecting previously unselected package r-cran-broom. 827s Preparing to unpack .../170-r-cran-broom_1.0.12+dfsg-1_all.deb ... 827s Unpacking r-cran-broom (1.0.12+dfsg-1) ... 827s Selecting previously unselected package r-cran-fastmap. 828s Preparing to unpack .../171-r-cran-fastmap_1.2.0-1_armhf.deb ... 828s Unpacking r-cran-fastmap (1.2.0-1) ... 828s Selecting previously unselected package r-cran-cachem. 828s Preparing to unpack .../172-r-cran-cachem_1.1.0-1_armhf.deb ... 828s Unpacking r-cran-cachem (1.1.0-1) ... 828s Selecting previously unselected package r-cran-digest. 828s Preparing to unpack .../173-r-cran-digest_0.6.39-1_armhf.deb ... 828s Unpacking r-cran-digest (0.6.39-1) ... 828s Selecting previously unselected package r-cran-htmltools. 828s Preparing to unpack .../174-r-cran-htmltools_0.5.8.1-1_armhf.deb ... 828s Unpacking r-cran-htmltools (0.5.8.1-1) ... 828s Selecting previously unselected package r-cran-jquerylib. 828s Preparing to unpack .../175-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 828s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 828s Selecting previously unselected package r-cran-jsonlite. 828s Preparing to unpack .../176-r-cran-jsonlite_1.9.1+dfsg-1_armhf.deb ... 828s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 828s Selecting previously unselected package r-cran-memoise. 828s Preparing to unpack .../177-r-cran-memoise_2.0.1-1build1_all.deb ... 828s Unpacking r-cran-memoise (2.0.1-1build1) ... 828s Selecting previously unselected package r-cran-mime. 828s Preparing to unpack .../178-r-cran-mime_0.12-2_armhf.deb ... 828s Unpacking r-cran-mime (0.12-2) ... 828s Selecting previously unselected package r-cran-fs. 828s Preparing to unpack .../179-r-cran-fs_1.6.5+dfsg-1_armhf.deb ... 828s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 828s Selecting previously unselected package r-cran-rappdirs. 828s Preparing to unpack .../180-r-cran-rappdirs_0.3.3-1build1_armhf.deb ... 828s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 828s Selecting previously unselected package r-cran-sass. 828s Preparing to unpack .../181-r-cran-sass_0.4.9+dfsg-1_armhf.deb ... 828s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 828s Selecting previously unselected package r-cran-bslib. 828s Preparing to unpack .../182-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 828s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 828s Selecting previously unselected package r-cran-cardata. 828s Preparing to unpack .../183-r-cran-cardata_3.0.6-1_all.deb ... 828s Unpacking r-cran-cardata (3.0.6-1) ... 828s Selecting previously unselected package r-cran-formula. 828s Preparing to unpack .../184-r-cran-formula_1.2-5-1_all.deb ... 828s Unpacking r-cran-formula (1.2-5-1) ... 828s Selecting previously unselected package r-cran-nlme. 828s Preparing to unpack .../185-r-cran-nlme_3.1.168-1_armhf.deb ... 828s Unpacking r-cran-nlme (3.1.168-1) ... 828s Selecting previously unselected package r-cran-mgcv. 828s Preparing to unpack .../186-r-cran-mgcv_1.9-4-1_armhf.deb ... 828s Unpacking r-cran-mgcv (1.9-4-1) ... 828s Selecting previously unselected package r-cran-nnet. 828s Preparing to unpack .../187-r-cran-nnet_7.3-20-1_armhf.deb ... 828s Unpacking r-cran-nnet (7.3-20-1) ... 828s Selecting previously unselected package r-cran-minqa. 828s Preparing to unpack .../188-r-cran-minqa_1.2.8-1_armhf.deb ... 828s Unpacking r-cran-minqa (1.2.8-1) ... 828s Selecting previously unselected package libnlopt0:armhf. 828s Preparing to unpack .../189-libnlopt0_2.7.1-7ubuntu1_armhf.deb ... 828s Unpacking libnlopt0:armhf (2.7.1-7ubuntu1) ... 828s Selecting previously unselected package r-cran-nloptr. 828s Preparing to unpack .../190-r-cran-nloptr_2.2.1-2_armhf.deb ... 828s Unpacking r-cran-nloptr (2.2.1-2) ... 829s Selecting previously unselected package r-cran-rbibutils. 829s Preparing to unpack .../191-r-cran-rbibutils_2.3-1_armhf.deb ... 829s Unpacking r-cran-rbibutils (2.3-1) ... 829s Selecting previously unselected package r-cran-rdpack. 829s Preparing to unpack .../192-r-cran-rdpack_2.6.3-1_all.deb ... 829s Unpacking r-cran-rdpack (2.6.3-1) ... 829s Selecting previously unselected package r-cran-reformulas. 829s Preparing to unpack .../193-r-cran-reformulas_0.4.4-1_all.deb ... 829s Unpacking r-cran-reformulas (0.4.4-1) ... 829s Selecting previously unselected package r-cran-statmod. 829s Preparing to unpack .../194-r-cran-statmod_1.5.0-1_armhf.deb ... 829s Unpacking r-cran-statmod (1.5.0-1) ... 829s Selecting previously unselected package r-cran-lme4. 829s Preparing to unpack .../195-r-cran-lme4_1.1-38-1_armhf.deb ... 829s Unpacking r-cran-lme4 (1.1-38-1) ... 829s Selecting previously unselected package r-cran-numderiv. 829s Preparing to unpack .../196-r-cran-numderiv_2016.8-1.1-3build1_all.deb ... 829s Unpacking r-cran-numderiv (2016.8-1.1-3build1) ... 829s Selecting previously unselected package r-cran-gtable. 829s Preparing to unpack .../197-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 829s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 829s Selecting previously unselected package r-cran-isoband. 829s Preparing to unpack .../198-r-cran-isoband_0.2.7-1_armhf.deb ... 829s Unpacking r-cran-isoband (0.2.7-1) ... 829s Selecting previously unselected package r-cran-farver. 829s Preparing to unpack .../199-r-cran-farver_2.1.2-1_armhf.deb ... 829s Unpacking r-cran-farver (2.1.2-1) ... 829s Selecting previously unselected package r-cran-labeling. 829s Preparing to unpack .../200-r-cran-labeling_0.4.3-1_all.deb ... 829s Unpacking r-cran-labeling (0.4.3-1) ... 829s Selecting previously unselected package r-cran-viridislite. 829s Preparing to unpack .../201-r-cran-viridislite_0.4.3-1_all.deb ... 829s Unpacking r-cran-viridislite (0.4.3-1) ... 829s Selecting previously unselected package r-cran-scales. 829s Preparing to unpack .../202-r-cran-scales_1.4.0-1_all.deb ... 829s Unpacking r-cran-scales (1.4.0-1) ... 829s Selecting previously unselected package r-cran-ggplot2. 829s Preparing to unpack .../203-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 829s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 829s Selecting previously unselected package r-cran-cowplot. 829s Preparing to unpack .../204-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 829s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 829s Selecting previously unselected package r-cran-deriv. 829s Preparing to unpack .../205-r-cran-deriv_4.2.0-1_all.deb ... 829s Unpacking r-cran-deriv (4.2.0-1) ... 830s Selecting previously unselected package r-cran-colorspace. 830s Preparing to unpack .../206-r-cran-colorspace_2.1-1+dfsg-1_armhf.deb ... 830s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 830s Selecting previously unselected package r-cran-fracdiff. 830s Preparing to unpack .../207-r-cran-fracdiff_1.5-3-1_armhf.deb ... 830s Unpacking r-cran-fracdiff (1.5-3-1) ... 830s Selecting previously unselected package r-cran-zoo. 830s Preparing to unpack .../208-r-cran-zoo_1.8-15-1_armhf.deb ... 830s Unpacking r-cran-zoo (1.8-15-1) ... 830s Selecting previously unselected package r-cran-lmtest. 830s Preparing to unpack .../209-r-cran-lmtest_0.9.40-1build1_armhf.deb ... 830s Unpacking r-cran-lmtest (0.9.40-1build1) ... 830s Selecting previously unselected package r-cran-timedate. 830s Preparing to unpack .../210-r-cran-timedate_4052.112-1_armhf.deb ... 830s Unpacking r-cran-timedate (4052.112-1) ... 830s Selecting previously unselected package r-cran-quadprog. 830s Preparing to unpack .../211-r-cran-quadprog_1.5-8-1build2_armhf.deb ... 830s Unpacking r-cran-quadprog (1.5-8-1build2) ... 830s Selecting previously unselected package r-cran-xts. 830s Preparing to unpack .../212-r-cran-xts_0.14.1-1_armhf.deb ... 830s Unpacking r-cran-xts (0.14.1-1) ... 830s Selecting previously unselected package r-cran-curl. 830s Preparing to unpack .../213-r-cran-curl_7.0.0+dfsg-1_armhf.deb ... 830s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 830s Selecting previously unselected package r-cran-ttr. 830s Preparing to unpack .../214-r-cran-ttr_0.24.4-1_armhf.deb ... 830s Unpacking r-cran-ttr (0.24.4-1) ... 830s Selecting previously unselected package r-cran-quantmod. 830s Preparing to unpack .../215-r-cran-quantmod_0.4.28-1_all.deb ... 830s Unpacking r-cran-quantmod (0.4.28-1) ... 830s Selecting previously unselected package r-cran-tseries. 830s Preparing to unpack .../216-r-cran-tseries_0.10-59-3_armhf.deb ... 830s Unpacking r-cran-tseries (0.10-59-3) ... 830s Selecting previously unselected package r-cran-urca. 830s Preparing to unpack .../217-r-cran-urca_1.3-4-1build1_armhf.deb ... 830s Unpacking r-cran-urca (1.3-4-1build1) ... 830s Selecting previously unselected package r-cran-forecast. 830s Preparing to unpack .../218-r-cran-forecast_8.23.0-1_armhf.deb ... 830s Unpacking r-cran-forecast (8.23.0-1) ... 830s Selecting previously unselected package r-cran-modelr. 830s Preparing to unpack .../219-r-cran-modelr_0.1.11-1_all.deb ... 830s Unpacking r-cran-modelr (0.1.11-1) ... 830s Selecting previously unselected package r-cran-microbenchmark. 830s Preparing to unpack .../220-r-cran-microbenchmark_1.5.0-1_armhf.deb ... 830s Unpacking r-cran-microbenchmark (1.5.0-1) ... 830s Selecting previously unselected package r-cran-doby. 830s Preparing to unpack .../221-r-cran-doby_4.7.1-3_all.deb ... 830s Unpacking r-cran-doby (4.7.1-3) ... 830s Selecting previously unselected package r-cran-evaluate. 830s Preparing to unpack .../222-r-cran-evaluate_1.0.5-1_all.deb ... 830s Unpacking r-cran-evaluate (1.0.5-1) ... 830s Selecting previously unselected package r-cran-xfun. 830s Preparing to unpack .../223-r-cran-xfun_0.55+dfsg-1_armhf.deb ... 830s Unpacking r-cran-xfun (0.55+dfsg-1) ... 830s Selecting previously unselected package r-cran-highr. 830s Preparing to unpack .../224-r-cran-highr_0.11+dfsg-1_all.deb ... 830s Unpacking r-cran-highr (0.11+dfsg-1) ... 830s Selecting previously unselected package r-cran-yaml. 830s Preparing to unpack .../225-r-cran-yaml_2.3.10-1_armhf.deb ... 830s Unpacking r-cran-yaml (2.3.10-1) ... 830s Selecting previously unselected package libjs-mathjax. 830s Preparing to unpack .../226-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 830s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 831s Selecting previously unselected package r-cran-knitr. 831s Preparing to unpack .../227-r-cran-knitr_1.51+dfsg-1_all.deb ... 831s Unpacking r-cran-knitr (1.51+dfsg-1) ... 831s Selecting previously unselected package r-cran-pbkrtest. 831s Preparing to unpack .../228-r-cran-pbkrtest_0.5.5-1_all.deb ... 831s Unpacking r-cran-pbkrtest (0.5.5-1) ... 831s Selecting previously unselected package r-cran-sparsem. 831s Preparing to unpack .../229-r-cran-sparsem_1.84-2-1_armhf.deb ... 831s Unpacking r-cran-sparsem (1.84-2-1) ... 831s Selecting previously unselected package r-cran-matrixmodels. 831s Preparing to unpack .../230-r-cran-matrixmodels_0.5-4-1_all.deb ... 831s Unpacking r-cran-matrixmodels (0.5-4-1) ... 831s Selecting previously unselected package r-cran-survival. 831s Preparing to unpack .../231-r-cran-survival_3.8-6-1_armhf.deb ... 831s Unpacking r-cran-survival (3.8-6-1) ... 831s Selecting previously unselected package r-cran-matrixstats. 831s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_armhf.deb ... 831s Unpacking r-cran-matrixstats (1.5.0-1) ... 831s Selecting previously unselected package r-cran-class. 831s Preparing to unpack .../233-r-cran-class_7.3-23-1_armhf.deb ... 831s Unpacking r-cran-class (7.3-23-1) ... 832s Selecting previously unselected package r-cran-proxy. 832s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_armhf.deb ... 832s Unpacking r-cran-proxy (0.4-27-1) ... 832s Selecting previously unselected package r-cran-e1071. 832s Preparing to unpack .../235-r-cran-e1071_1.7-17-1_armhf.deb ... 832s Unpacking r-cran-e1071 (1.7-17-1) ... 832s Selecting previously unselected package r-cran-codetools. 832s Preparing to unpack .../236-r-cran-codetools_0.2-20-1build1_all.deb ... 832s Unpacking r-cran-codetools (0.2-20-1build1) ... 832s Selecting previously unselected package r-cran-iterators. 832s Preparing to unpack .../237-r-cran-iterators_1.0.14-1build1_all.deb ... 832s Unpacking r-cran-iterators (1.0.14-1build1) ... 832s Selecting previously unselected package r-cran-foreach. 832s Preparing to unpack .../238-r-cran-foreach_1.5.2-1build1_all.deb ... 832s Unpacking r-cran-foreach (1.5.2-1build1) ... 832s Selecting previously unselected package r-cran-data.table. 832s Preparing to unpack .../239-r-cran-data.table_1.17.0+dfsg-1_armhf.deb ... 832s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 832s Selecting previously unselected package r-cran-modelmetrics. 832s Preparing to unpack .../240-r-cran-modelmetrics_1.2.2.2-1build2_armhf.deb ... 832s Unpacking r-cran-modelmetrics (1.2.2.2-1build2) ... 832s Selecting previously unselected package r-cran-plyr. 832s Preparing to unpack .../241-r-cran-plyr_1.8.9-1_armhf.deb ... 832s Unpacking r-cran-plyr (1.8.9-1) ... 832s Selecting previously unselected package r-cran-proc. 832s Preparing to unpack .../242-r-cran-proc_1.18.5-1_armhf.deb ... 832s Unpacking r-cran-proc (1.18.5-1) ... 832s Selecting previously unselected package r-cran-tzdb. 832s Preparing to unpack .../243-r-cran-tzdb_0.5.0-1_armhf.deb ... 832s Unpacking r-cran-tzdb (0.5.0-1) ... 832s Selecting previously unselected package r-cran-clock. 832s Preparing to unpack .../244-r-cran-clock_0.7.2-1_armhf.deb ... 832s Unpacking r-cran-clock (0.7.2-1) ... 832s Selecting previously unselected package r-cran-gower. 832s Preparing to unpack .../245-r-cran-gower_1.0.2-1_armhf.deb ... 832s Unpacking r-cran-gower (1.0.2-1) ... 832s Selecting previously unselected package r-cran-sparsevctrs. 832s Preparing to unpack .../246-r-cran-sparsevctrs_0.2.0-2_armhf.deb ... 832s Unpacking r-cran-sparsevctrs (0.2.0-2) ... 832s Selecting previously unselected package r-cran-hardhat. 832s Preparing to unpack .../247-r-cran-hardhat_1.4.2+dfsg-1_all.deb ... 832s Unpacking r-cran-hardhat (1.4.2+dfsg-1) ... 832s Selecting previously unselected package r-cran-rpart. 832s Preparing to unpack .../248-r-cran-rpart_4.1.24-1build1_armhf.deb ... 832s Unpacking r-cran-rpart (4.1.24-1build1) ... 832s Selecting previously unselected package r-cran-shape. 832s Preparing to unpack .../249-r-cran-shape_1.4.6.1-1_all.deb ... 832s Unpacking r-cran-shape (1.4.6.1-1) ... 832s Selecting previously unselected package r-cran-diagram. 832s Preparing to unpack .../250-r-cran-diagram_1.6.5-2_all.deb ... 832s Unpacking r-cran-diagram (1.6.5-2) ... 832s Selecting previously unselected package r-cran-globals. 832s Preparing to unpack .../251-r-cran-globals_0.19.0-1_all.deb ... 832s Unpacking r-cran-globals (0.19.0-1) ... 832s Selecting previously unselected package r-cran-listenv. 832s Preparing to unpack .../252-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 832s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 832s Selecting previously unselected package r-cran-parallelly. 832s Preparing to unpack .../253-r-cran-parallelly_1.42.0-1_armhf.deb ... 832s Unpacking r-cran-parallelly (1.42.0-1) ... 833s Selecting previously unselected package r-cran-future. 833s Preparing to unpack .../254-r-cran-future_1.34.0+dfsg-1_all.deb ... 833s Unpacking r-cran-future (1.34.0+dfsg-1) ... 833s Selecting previously unselected package r-cran-future.apply. 833s Preparing to unpack .../255-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 833s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 833s Selecting previously unselected package r-cran-progressr. 833s Preparing to unpack .../256-r-cran-progressr_0.15.1-1_all.deb ... 833s Unpacking r-cran-progressr (0.15.1-1) ... 833s Selecting previously unselected package r-cran-squarem. 833s Preparing to unpack .../257-r-cran-squarem_2021.1-1build1_all.deb ... 833s Unpacking r-cran-squarem (2021.1-1build1) ... 833s Selecting previously unselected package r-cran-lava. 833s Preparing to unpack .../258-r-cran-lava_1.8.2+dfsg-1_all.deb ... 833s Unpacking r-cran-lava (1.8.2+dfsg-1) ... 833s Selecting previously unselected package r-cran-prodlim. 833s Preparing to unpack .../259-r-cran-prodlim_2024.06.25-1_armhf.deb ... 833s Unpacking r-cran-prodlim (2024.06.25-1) ... 833s Selecting previously unselected package r-cran-ipred. 833s Preparing to unpack .../260-r-cran-ipred_0.9-15-1_armhf.deb ... 833s Unpacking r-cran-ipred (0.9-15-1) ... 833s Selecting previously unselected package r-cran-timechange. 833s Preparing to unpack .../261-r-cran-timechange_0.3.0-2_armhf.deb ... 833s Unpacking r-cran-timechange (0.3.0-2) ... 833s Selecting previously unselected package r-cran-lubridate. 833s Preparing to unpack .../262-r-cran-lubridate_1.9.4+dfsg-1_armhf.deb ... 833s Unpacking r-cran-lubridate (1.9.4+dfsg-1) ... 833s Selecting previously unselected package r-cran-recipes. 833s Preparing to unpack .../263-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 833s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 833s Selecting previously unselected package r-cran-reshape2. 833s Preparing to unpack .../264-r-cran-reshape2_1.4.4-2build2_armhf.deb ... 833s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 833s Selecting previously unselected package r-cran-caret. 833s Preparing to unpack .../265-r-cran-caret_7.0-1+dfsg-1_armhf.deb ... 833s Unpacking r-cran-caret (7.0-1+dfsg-1) ... 833s Selecting previously unselected package r-cran-conquer. 833s Preparing to unpack .../266-r-cran-conquer_1.3.3-1_armhf.deb ... 833s Unpacking r-cran-conquer (1.3.3-1) ... 833s Selecting previously unselected package r-cran-quantreg. 833s Preparing to unpack .../267-r-cran-quantreg_6.1-1_armhf.deb ... 833s Unpacking r-cran-quantreg (6.1-1) ... 833s Selecting previously unselected package r-cran-car. 833s Preparing to unpack .../268-r-cran-car_3.1-5-1_all.deb ... 833s Unpacking r-cran-car (3.1-5-1) ... 833s Selecting previously unselected package r-cran-classint. 833s Preparing to unpack .../269-r-cran-classint_0.4-11+dfsg-1_armhf.deb ... 833s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 833s Selecting previously unselected package r-cran-commonmark. 834s Preparing to unpack .../270-r-cran-commonmark_1.9.5-1_armhf.deb ... 834s Unpacking r-cran-commonmark (1.9.5-1) ... 834s Selecting previously unselected package r-cran-crayon. 834s Preparing to unpack .../271-r-cran-crayon_1.5.3-1_all.deb ... 834s Unpacking r-cran-crayon (1.5.3-1) ... 834s Selecting previously unselected package r-cran-dbi. 834s Preparing to unpack .../272-r-cran-dbi_1.2.3-1build1_all.deb ... 834s Unpacking r-cran-dbi (1.2.3-1build1) ... 834s Selecting previously unselected package r-cran-fontawesome. 834s Preparing to unpack .../273-r-cran-fontawesome_0.5.3-1_all.deb ... 834s Unpacking r-cran-fontawesome (0.5.3-1) ... 834s Selecting previously unselected package r-cran-guerry. 834s Preparing to unpack .../274-r-cran-guerry_1.8.3-1_all.deb ... 834s Unpacking r-cran-guerry (1.8.3-1) ... 834s Selecting previously unselected package r-cran-later. 834s Preparing to unpack .../275-r-cran-later_1.4.1+dfsg-1_armhf.deb ... 834s Unpacking r-cran-later (1.4.1+dfsg-1) ... 834s Selecting previously unselected package r-cran-promises. 834s Preparing to unpack .../276-r-cran-promises_1.3.2+dfsg-1_armhf.deb ... 834s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 834s Selecting previously unselected package r-cran-httpuv. 834s Preparing to unpack .../277-r-cran-httpuv_1.6.15+dfsg-1_armhf.deb ... 834s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 834s Selecting previously unselected package r-cran-markdown. 834s Preparing to unpack .../278-r-cran-markdown_1.13-1_all.deb ... 834s Unpacking r-cran-markdown (1.13-1) ... 834s Selecting previously unselected package r-cran-tinytex. 834s Preparing to unpack .../279-r-cran-tinytex_0.58-1_all.deb ... 834s Unpacking r-cran-tinytex (0.58-1) ... 834s Selecting previously unselected package libjs-modernizr. 834s Preparing to unpack .../280-libjs-modernizr_3.13.0-0.1build1_all.deb ... 834s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 834s Selecting previously unselected package r-cran-xtable. 834s Preparing to unpack .../281-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 834s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 834s Selecting previously unselected package r-cran-sourcetools. 834s Preparing to unpack .../282-r-cran-sourcetools_0.1.7-1-1_armhf.deb ... 834s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 834s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 834s Preparing to unpack .../283-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 834s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 834s Selecting previously unselected package r-cran-shiny. 834s Preparing to unpack .../284-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 834s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 835s Selecting previously unselected package r-cran-rmarkdown. 835s Preparing to unpack .../285-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 835s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 835s Selecting previously unselected package r-cran-wk. 835s Preparing to unpack .../286-r-cran-wk_0.9.4-1_armhf.deb ... 835s Unpacking r-cran-wk (0.9.4-1) ... 835s Selecting previously unselected package r-cran-s2. 835s Preparing to unpack .../287-r-cran-s2_1.1.9-1build1_armhf.deb ... 835s Unpacking r-cran-s2 (1.1.9-1build1) ... 835s Selecting previously unselected package r-cran-units. 835s Preparing to unpack .../288-r-cran-units_0.8-7+dfsg-2_armhf.deb ... 835s Unpacking r-cran-units (0.8-7+dfsg-2) ... 835s Selecting previously unselected package r-cran-sf. 835s Preparing to unpack .../289-r-cran-sf_1.0-19+dfsg-2build2_armhf.deb ... 835s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 835s Selecting previously unselected package r-cran-spdata. 835s Preparing to unpack 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up libtk8.6:armhf (8.6.17-1) ... 838s Setting up libpango-1.0-0:armhf (1.57.0-1) ... 838s Setting up libnetcdf22:armhf (1:4.9.3-1build1) ... 838s Setting up libkmlengine1t64:armhf (1.3.0-13) ... 838s Setting up libcairo2:armhf (1.18.4-3) ... 838s Setting up libgeotiff5:armhf (1.7.4-1build1) ... 838s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 838s Setting up libpangoft2-1.0-0:armhf (1.57.0-1) ... 838s Setting up libpangocairo-1.0-0:armhf (1.57.0-1) ... 838s Setting up libspatialite8t64:armhf (5.1.0-3ubuntu1) ... 838s Setting up r-base-core (4.5.2-1ubuntu2) ... 839s Creating config file /etc/R/Renviron with new version 839s Setting up r-cran-crayon (1.5.3-1) ... 839s Setting up r-cran-squarem (2021.1-1build1) ... 839s Setting up r-cran-labeling (0.4.3-1) ... 839s Setting up r-cran-sourcetools (0.1.7-1-1) ... 839s Setting up r-cran-lattice (0.22-9-1) ... 839s Setting up r-cran-nlme (3.1.168-1) ... 839s Setting up r-cran-farver (2.1.2-1) ... 839s Setting up r-cran-formula (1.2-5-1) ... 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839s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 839s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 839s Setting up r-cran-rpart (4.1.24-1build1) ... 839s Setting up r-cran-latticeextra (0.6-31-1) ... 839s Setting up r-cran-ipred (0.9-15-1) ... 839s Setting up r-cran-lme4 (1.1-38-1) ... 839s Setting up r-cran-classint (0.4-11+dfsg-1) ... 839s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 839s Setting up r-cran-tidyr (1.3.1-1) ... 839s Setting up r-cran-recipes (1.1.0+dfsg-1) ... 839s Setting up r-cran-quantmod (0.4.28-1) ... 839s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 839s Setting up r-cran-adegraphics (1.0-22-1) ... 839s Setting up r-cran-caret (7.0-1+dfsg-1) ... 839s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 839s Setting up r-cran-tseries (0.10-59-3) ... 839s Setting up r-cran-broom (1.0.12+dfsg-1) ... 839s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 839s Setting up r-cran-conquer (1.3.3-1) ... 839s Setting up r-cran-forecast (8.23.0-1) ... 839s Setting up 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ABSOLUTELY NO WARRANTY. 849s You are welcome to redistribute it under certain conditions. 849s Type 'license()' or 'licence()' for distribution details. 849s 849s R is a collaborative project with many contributors. 849s Type 'contributors()' for more information and 849s 'citation()' on how to cite R or R packages in publications. 849s 849s Type 'demo()' for some demos, 'help()' for on-line help, or 849s 'help.start()' for an HTML browser interface to help. 849s Type 'q()' to quit R. 849s 849s > library(adegraphics) 850s Registered S3 methods overwritten by 'adegraphics': 850s method from 850s biplot.dudi ade4 850s kplot.foucart ade4 850s kplot.mcoa ade4 850s kplot.mfa ade4 850s kplot.pta ade4 850s kplot.sepan ade4 850s kplot.statis ade4 850s scatter.coa ade4 850s scatter.dudi ade4 850s scatter.nipals ade4 850s scatter.pco ade4 850s score.acm ade4 850s score.mix ade4 850s score.pca ade4 850s screeplot.dudi ade4 850s > pdf("add.pdf") 850s > set.seed(40) 850s > 850s > ########################### add.ADEg ############################## 850s > 850s > data(granulo, package = "ade4") 850s > df <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 850s > pca <- ade4::dudi.pca(df, scal = FALSE, scan = FALSE) 850s > 850s > g1 <- s.arrow(ade4::dudi.pca(data.frame(df), scan = F, nf = 2)$co) 850s > g2 <- s.label(pca$li, plabels.cex = 0.5, plabels.col = "blue", plot = F) 850s > g3 <- add.ADEg(g2) 850s > g4 <- s.label(pca$c1, plabels.col = "red", add = T) 850s > 850s > g5 <- s.arrow(pca$c1, plabels.cex = 1.5, plot = FALSE) 850s > g6 <- ADEgS(list(g1 = g1, g5 = g5), layout = c(1, 2)) 851s > update(g6, pback.col = "lightblue", g1.plabels.cex = 2, g5.plabels.col = "red") 851s > 851s > 851s > ############################## addhist ############################## 851s > dfxy1 <- matrix(rnorm(200), ncol = 2) 851s > gh1 <- s.label(dfxy1) 851s > gh2 <- addhist(gh1) 851s > 851s > dfxy2 <- dfxy1 851s > dfxy2[, 2] <- dfxy2[, 2] + rnorm(100, 2) 851s > gh3 <- s.label(dfxy2) 851s > gh4 <- addhist(gh3, plot.polygon = list(col = "red")) 851s > 851s > data(rpjdl, package = "ade4") 851s > coa1 <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 851s > gh5 <- s.label(coa1$li) 851s > gh6 <- addhist(gh5) 852s > 852s > 852s > ############################## addtext ############################## 852s > # on a ADEg 852s > addtext(g1, -1, 1, "Data Granulo", plabels.cex = 1.5, plabels.col = "red") 852s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) # the two labels are superposed 852s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") # the two labels are superposed 852s > 852s > addtext(g1, c(-1, -0.5), 1, "Data Granulo", plabels.cex = 1.5, plabels.col = c("red", "blue")) 852s > addtext(g1, c(-1, -0.5), 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) 852s > 852s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") 852s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = c(1.5, 2), plabels.col = "red") 852s > 852s > data(dunedata, package = "ade4") 852s > afc1 <- ade4::dudi.coa(dunedata$veg, scannf = FALSE) 852s > g7 <- table.value(dunedata$veg, symbol = "circle", ppoints.cex = 0.5, plot = FALSE) 852s > addtext(g7, 1, 20, "A", plabels.srt = 45, plabels.boxes.draw = FALSE) 852s > 852s > # on a ADEgS: juxtaposition 852s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1) 852s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("blue", "green"), which = 2) 852s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"), which = 2) 853s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1:2) 853s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue")) 853s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.col = "blue", plabels.cex = 1.2, which = 1:2) 853s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.cex = c(0.5, 1.5), plabels.col = c("blue", "green4")) 853s > 853s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 853s > fac2 <- factor(xy2$x > 0) 853s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 853s > addtext(g9, 0, 0, "A", plabels.col = "red", plabels.cex = 2) 853s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col ="red", plabels.cex = 2, which = 1:2) 853s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col = c("green4", "red"), plabels.cex = c(3, 2), which = 1:2) 854s > 854s > # on a ADEgS: facets 854s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 854s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 854s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 854s > addtext(g10, c(0.5, 0.5, -0.5, -0.5), c(0.5, -0.5), levels(posi), plabels.cex = 2, plabels.col = 1:4) 854s > 854s > 854s > ############################## addline ############################## 854s > # on a 2D plot 854s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), plot = FALSE) 854s > addline(g11, 0, 1, plines = list(col = "red", lwd = 2, lty = 2)) 854s > addline(g11, h = 1, plines.col = "chartreuse4", plines.lwd = 3) 854s > addline(g11, v = c(-1, 1), plines.col = "cadetblue", plines.lwd = 3) 854s > 854s > # on a 1D plot 854s > g12 <- s1d.label(rnorm(10), plot = FALSE) 854s > addline(g12, v = 1, plines.col = "chartreuse4", plines.lwd = 3) 854s > 854s > # on a ADEgS: juxtaposition 854s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 854s > addline(g13, 0, 1, which = 1, plines.col = "red") 854s > addline(g13, 0, 1, which = 2, plines.col = "red") 854s > addline(g13, 0, 1, which = 1:2, plines.col = "red") 854s > addline(g13, 0, 1, plines.col = "red") 855s > addline(g13, h = 1, plines.col = "red") 855s > addline(g13, h = c(1, -1), plines.col = "red") 855s > addline(g13, v = c(-1, 1), plines.col = "red") 855s > addline(g13, v = c(-1, 1), plines.col = 2:3) 855s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1:2, plines.col = "red") 855s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1, plines.col = "red") 855s > addline(g13, 0.7, 0.2, which = 1, plines.col = "red") 855s > addline(g13, 0.7, -0.5, which = 1, plines.col = "red") 855s > 855s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 855s > fac2 <- factor(xy2$x > 0) 855s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 855s > addline(g9, 1, 0, "A", plines.col = "red", plabels.cex = 2) 856s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col ="red", which = 1:2) 856s Warning messages: 856s 1: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 856s NAs introduced by coercion 856s 2: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 856s NAs introduced by coercion 856s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col = c("green4", "red")) 856s > 856s > # on a ADEgS: facets 856s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 856s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 856s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 856s > addline(g10, 0, c(0.5, -0.5), plines.col = 1:4) 856s > 856s > 856s > ############################## addpoint ############################## 856s > # on a 2D plot 856s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", 856s + paxes.draw = TRUE, plot = FALSE) 856s > addpoint(g11, 2, 2, ppoints.col = "coral", ppoints.pch = "*", ppoints.cex = 4) 856s > addpoint(g11, c(1, 2), c(1, 2), ppoints.col = "brown2") 856s > addpoint(g11, 1, c(1, 2), ppoints.col = "cyan3") 857s > 857s > # on a 1D plot 857s > g12 <- s1d.density(rnorm(1000), paxes.draw = TRUE, plot = FALSE) 857s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 857s > 857s > g12 <- s1d.density(rnorm(1000), plot = FALSE, ylab = "y axis label") 857s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 857s > 857s > # on a ADEgS: juxtaposition 857s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 857s > addpoint(g13, 2, 2, which = 1, ppoints.col = "cyan3") 857s > addpoint(g13, 2, 2, which = 2, ppoints.col = "cyan3") 857s > addpoint(g13, 2, 2, which = 1:2, ppoints.col = "cyan3") 857s > addpoint(g13, 2, 2, ppoints.col = "cyan3") 857s > addpoint(g13, c(1, 2), 2, ppoints.col = "cyan3") 858s > addpoint(g13, 2, c(1, 2), ppoints.col = "cyan3") 858s > 858s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 858s > fac2 <- factor(xy2$x > 0) 858s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 858s > addpoint(g9, 1, 0, ppoints.col = "red", ppoints.cex = 2) 858s > addpoint(g9, c(1, -1), 0, ppoints.col = "red", ppoints.cex = 2) 858s > addpoint(g9, 0, c(1, -1), ppoints.col = "red", ppoints.cex = 2) 858s > 858s > # on a ADEgS: facets 858s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 858s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 858s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 858s > addpoint(g10, 0, c(0.5, -0.5), ppoints.col = 1:4, ppoints.cex = 3) 859s > 859s > 859s > ############################## addsegment ############################## 859s > # on a 2D plot 859s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), paxes.draw = TRUE, plot = FALSE) 859s > addsegment(g11, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 859s > addsegment(g11, c(0, 1), 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 859s > addsegment(g11, c(0, 1), 2, c(0, 1), -2, plines = list(col = c("cyan3", "brown2"), lwd = 3, lty = 2)) 859s > addsegment(g11, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 859s > addsegment(g11, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 859s > 859s > g12 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", plot = FALSE) 859s > addsegment(g12, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 859s > addsegment(g12, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 859s > addsegment(g12, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 859s > 859s > # on a 1D plot 859s > g13 <- s1d.density(rnorm(1000), paxes.draw = TRUE, ylab = "ylab", plot = FALSE) 859s > addsegment(g13, 2, 0, 2, 0.2, plines.col = 1, plines.lwd = 3) 859s > 859s > # on a ADEgS: juxtaposition 859s > g14 <- ADEgS(c(g11, g11), plot = FALSE) 859s > addsegment(g14, 1, 2, 1, -2, which = 1, plines.col = "brown2") 859s > addsegment(g14, 1, 2, 1, -2, which = 2, plines.col = "brown2") 859s > addsegment(g14, c(0, 1), 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 860s > addsegment(g14, 1, 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 860s > addsegment(g14, 1, 2, 1, -2, plines.col = "brown2") 860s > 860s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 860s > fac2 <- factor(xy2$x > 0) 860s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 860s > addsegment(g9, 1, 0, 1, 0.5, plines.col = "red", plines.lwd = 2) 860s > addsegment(g9, 1, -1, 0, 1, plines.col = "red", plines.lwd = 2) 860s > addsegment(g9, 0, 1, -1, 1, plines.col = "red", plines.lwd = 2) 860s > 860s > # on a ADEgS: facets 860s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 860s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 860s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 860s > addsegment(g10, c(-0.5, 0.5), c(0.5, -0.5), c(-0.5, 0.5), 1, plines.col = 1:4, plines.lwd = 3) 861s > 861s 861s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 861s Copyright (C) 2025 The R Foundation for Statistical Computing 861s Platform: arm-unknown-linux-gnueabihf (32-bit) 861s 861s R is free software and comes with ABSOLUTELY NO WARRANTY. 861s You are welcome to redistribute it under certain conditions. 861s Type 'license()' or 'licence()' for distribution details. 861s 861s R is a collaborative project with many contributors. 861s Type 'contributors()' for more information and 861s 'citation()' on how to cite R or R packages in publications. 861s 861s Type 'demo()' for some demos, 'help()' for on-line help, or 861s 'help.start()' for an HTML browser interface to help. 861s Type 'q()' to quit R. 861s 861s > ## delete/remove this file when 'scatter' functions will be removed in ade4 861s > 861s > library(adegraphics) 861s Registered S3 methods overwritten by 'adegraphics': 861s method from 861s biplot.dudi ade4 861s kplot.foucart ade4 861s kplot.mcoa ade4 861s kplot.mfa ade4 861s kplot.pta ade4 861s kplot.sepan ade4 861s kplot.statis ade4 861s scatter.coa ade4 861s scatter.dudi ade4 861s scatter.nipals ade4 861s scatter.pco ade4 861s score.acm ade4 861s score.mix ade4 861s score.pca ade4 861s screeplot.dudi ade4 862s > pdf("ade4-functions.pdf") 862s > 862s > ##################### scatter.dudi 862s > data(deug, package = "ade4") 862s > dd1 <- ade4::dudi.pca(deug$tab, scannf = FALSE, nf = 4) 862s > scatter(dd1, posieig = "bottomright") 862s > scatter(dd1, posieig = "bottomright", plot = T, prop = TRUE) 862s > scatter(dd1, posieig = "none", plot = T) 862s > scatter(dd1, posieig = "bottomleft", plot = T) 863s > scatter(dd1, posieig = "topright", plot = T) 863s > scatter(dd1, posieig = "topleft", plot = T, eig.col = c("white", "blue", "red")) 863s > 863s > data(rhone, package = "ade4") 863s > dd1 <- ade4::dudi.pca(rhone$tab, nf = 4, scannf = FALSE) 863s > g1 <- scatter(dd1, sub = "Principal component analysis", row = list(plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 864s > g1[2, drop = TRUE] 864s > scatter(dd1, row = list(sub = "Principal component analysis", plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 864s > scatter(dd1, prop = TRUE, ppoints.cex = 0.2, density.plot = TRUE, row = list(threshold = 0.01)) 865s > 865s > scatter(dd1, posieig = "none") 865s > scatter(dd1, posieig = "bottomright") 865s > scatter(dd1, posieig = c(0.5, 0.5)) 866s > scatter(dd1, posieig = c(0.5, 0.5, 1, 1)) 866s > 866s > 866s > ##################### scatter.coa 866s > data(housetasks, package = "ade4") 866s > par(mfrow = c(2, 2)) 866s > dd2 <- ade4::dudi.coa(housetasks, scan = FALSE) 866s > ade4::scatter(dd2, method = 1, sub = "1 / Standard", posieig = "none") 866s > ade4::scatter(dd2, method = 2, sub = "2 / Columns -> averaging -> Rows", posieig = "none") 866s > ade4::scatter(dd2, method = 3, sub = "3 / Rows -> averaging -> Columns ", posieig = "none") 866s > par(mfrow = c(1, 1)) 866s > 866s > g1 <- scatter(dd2, method = 1, row.sub = "1 / Standard", posieig = "none", plot = FALSE) 866s > g2 <- scatter(dd2, method = 2, col.sub = "2 / Columns -> averaging -> Rows", posieig = "none", plot = FALSE) 866s > g3 <- scatter(dd2, method = 3, row.sub = "3 / Rows -> averaging -> Columns ", posieig = "none", plot = FALSE) 866s > G <- ADEgS(list(g1, g2, g3), layout = c(2, 2), plot = TRUE) 867s > 867s > scatter(dd2, posieig = "none") 867s > scatter(dd2, posieig = "bottomright") 867s > scatter(dd2, posieig = c(0.5, 0.5)) 867s > scatter(dd2, posieig = c(0.5, 0.5, 1, 1)) 867s > 867s > 867s > ##################### scatter.pco 867s > data(yanomama, package = "ade4") 867s > gen <- ade4::quasieuclid(as.dist(yanomama$gen)) 867s > gen1 <- ade4::dudi.pco(gen, scann = FALSE, nf = 3) 867s > scatter(gen1, posieig = "none") 867s > scatter(gen1, posieig = "bottomri") 867s > scatter(gen1, posieig = c(0.5, 0.5)) 868s > scatter(gen1, posieig = c(0.5, 0.5, 1, 1)) 868s > 868s > 868s > ##################### scatter.nipals 868s > data(doubs, package = "ade4") 868s > acp1 <- ade4::dudi.pca(doubs$env, scannf = FALSE, nf = 2) 868s > nip1 <- ade4::nipals(doubs$env) 869s > scatter(nip1, posieig = "none") 869s > scatter(nip1, posieig = "bottomri") 869s > scatter(nip1, posieig = c(0.5, 0.5)) 869s > scatter(nip1, posieig = c(0.5, 0.5, 1, 1)) 870s > 870s > 870s > ##################### score.inertia - plot.inertia 870s > data(housetasks, package = "ade4") 870s > coa2 <- ade4::dudi.coa(housetasks, scann = FALSE) 870s > res21 <- ade4::inertia(coa2, row = TRUE, col = FALSE) 870s > plot(res21, posieig = "none") 870s > plot(res21, posieig = "bottomri") 870s > plot(res21, posieig = c(0.5,0.5)) 870s > plot(res21, posieig = c(0.5, 0.5, 1, 1)) 870s > score(res21, posieig = "none") 870s > score(res21, posieig = "bottomri") 870s > score(res21, posieig = c(0.5, 0.5)) 870s > score(res21, posieig = c(0.5, 0.5, 1, 1)) 871s > 871s > res22 <- ade4::inertia(coa2, row = FALSE, col = TRUE) 871s > plot(res22, posieig = "none") 871s > plot(res22, posieig = "bottomri") 871s > plot(res22, posieig = c(0.5, 0.5)) 871s > plot(res22, posieig = c(0.5, 0.5, 1, 1)) 871s > score(res22, posieig = "none") 871s > score(res22, posieig = "bottomri") 871s > score(res22, posieig = c(0.5, 0.5)) 871s > score(res22, posieig = c(0.5, 0.5, 1, 1)) 871s > 871s > res23 <- ade4::inertia(coa2, row = TRUE, col = TRUE) 871s > plot(res23, posieig = "none") 872s > plot(res23, posieig = "bottomri") 872s > plot(res23, posieig = c(0.5, 0.5)) 872s > plot(res23, posieig = c(0.5, 0.5, 1, 1)) 872s > score(res23, posieig = "none") 872s > score(res23, posieig = "bottomri") 873s > score(res23, posieig = c(0.5, 0.5)) 873s > score(res23, posieig = c(0.5, 0.5, 2, 2)) 873s > 873s > data(doubs, package = "ade4") 873s > afc <- ade4::dudi.coa(doubs$fish, scannf = FALSE, nf = 5) 873s > ic <- ade4::inertia.dudi(afc, row.inertia=TRUE, col.inertia=TRUE) 873s > plot(ic, contrib = "abs", threshold = 0.1, type = "label") 873s > plot(ic, contrib="abs", threshold = 0.1, type = "label", xax = 3, yax = 4) 874s > 874s > 874s > ##################### plot.acm 874s > data(lascaux, package = "ade4") 874s > 874s > acm1 <- ade4::dudi.acm(lascaux$ornem, sca = FALSE) 874s > p1 <- proc.time() 874s > ade4::scatter(acm1) 874s > Tade4 <- proc.time() - p1 874s > 874s > p2 <- proc.time() 874s > plot(acm1, ppoints.cex = 0.3, plot = T) 875s > Tadegraphics <- proc.time() - p2 875s > ## faster calculus, longest display than for ade4 875s > 875s > 875s > ##################### plot.fca 875s > data(coleo, package = "ade4") 875s > coleo.fuzzy <- ade4::prep.fuzzy.var(coleo$tab, coleo$col.blocks) 875s 2 missing data found in block 1 875s 1 missing data found in block 3 875s 2 missing data found in block 4 875s > 875s > fca1 <- ade4::dudi.fca(coleo.fuzzy, scannf = FALSE, nf = 3) 875s > ade4::scatter(fca1) 875s > plot(fca1) 875s > 876s 876s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 876s Copyright (C) 2025 The R Foundation for Statistical Computing 876s Platform: arm-unknown-linux-gnueabihf (32-bit) 876s 876s R is free software and comes with ABSOLUTELY NO WARRANTY. 876s You are welcome to redistribute it under certain conditions. 876s Type 'license()' or 'licence()' for distribution details. 876s 876s R is a collaborative project with many contributors. 876s Type 'contributors()' for more information and 876s 'citation()' on how to cite R or R packages in publications. 876s 876s Type 'demo()' for some demos, 'help()' for on-line help, or 876s 'help.start()' for an HTML browser interface to help. 876s Type 'q()' to quit R. 876s 876s > library(adegraphics) 876s Registered S3 methods overwritten by 'adegraphics': 876s method from 876s biplot.dudi ade4 876s kplot.foucart ade4 876s kplot.mcoa ade4 876s kplot.mfa ade4 876s kplot.pta ade4 876s kplot.sepan ade4 876s kplot.statis ade4 876s scatter.coa ade4 876s scatter.dudi ade4 876s scatter.nipals ade4 876s scatter.pco ade4 876s score.acm ade4 876s score.mix ade4 876s score.pca ade4 876s screeplot.dudi ade4 876s > pdf("adegraphics.pdf") 876s > 876s > xy <- cbind.data.frame(runif(7), runif(7)) 876s > g1 <- s.label(xy) 876s > 876s > data(olympic, package = "ade4") 876s > pca <- ade4::dudi.pca(olympic$tab, scan = FALSE) 876s > g2 <- s.corcircle(pca$co, lab = names(olympic$tab)) 876s > 876s > g3 <- ADEgS(list(g1, g2), rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 877s > g4 <- ADEgS(list(g1, g2), layout = c(1, 2)) ## the same as g3 877s > g4b <- ADEgS(list(g1, g2)) ## the same as g3 877s > g5 <- s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red") 877s > 877s > g6 <- superpose(g1, g5, plot = TRUE) 877s > g6b <- s.density(xy) 877s > g7 <- superpose(s.density(xy), g5, plot = TRUE) 878s > 878s > g8 <- superpose(s.label(xy, plabels.boxes.col = "orange", plot = FALSE), 878s + s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red", plot = FALSE), 878s + plot = TRUE) 878s > 878s > g9 <- g8[1, drop = TRUE] 878s > class(g9) 878s [1] "S2.label" 878s attr(,"package") 878s [1] "adegraphics" 878s > g10 <- g8[1, drop = FALSE] 878s > class(g10) 878s [1] "ADEgS" 878s attr(,"package") 878s [1] "adegraphics" 878s > 878s > g11 <- ADEgS(list(g8, g3), positions = rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 879s > 879s > ## cbindADEgS - rbindADEgS 879s > g12 <- cbindADEg(g1, g2, plot = TRUE) ## the same as g3 879s > g13 <- cbindADEg(g8, g3, plot = TRUE) ## the same as g11 879s > g14 <- rbindADEg(g8, g3, plot = TRUE) 879s > 879s > data(banque, package = "ade4") 879s > banque.acm <- ade4::dudi.acm(banque, scann = FALSE, nf = 3) 879s > g15 <- score(banque.acm, which = which(banque.acm$cr[, 1] > 0.2), plot = FALSE) 879s > g15 <- g15[[1]] 879s > cbindADEg(g15[[1]], g15[[2]], plot = TRUE) ## work on trellis object 879s > 879s > 879s 879s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 879s Copyright (C) 2025 The R Foundation for Statistical Computing 879s Platform: arm-unknown-linux-gnueabihf (32-bit) 879s 879s R is free software and comes with ABSOLUTELY NO WARRANTY. 879s You are welcome to redistribute it under certain conditions. 879s Type 'license()' or 'licence()' for distribution details. 879s 879s R is a collaborative project with many contributors. 879s Type 'contributors()' for more information and 879s 'citation()' on how to cite R or R packages in publications. 879s 879s Type 'demo()' for some demos, 'help()' for on-line help, or 879s 'help.start()' for an HTML browser interface to help. 879s Type 'q()' to quit R. 879s 879s > library(ade4) 880s > library(adegraphics) 880s Registered S3 methods overwritten by 'adegraphics': 880s method from 880s biplot.dudi ade4 880s kplot.foucart ade4 880s kplot.mcoa ade4 880s kplot.mfa ade4 880s kplot.pta ade4 880s kplot.sepan ade4 880s kplot.statis ade4 880s scatter.coa ade4 880s scatter.dudi ade4 880s scatter.nipals ade4 880s scatter.pco ade4 880s score.acm ade4 880s score.mix ade4 880s score.pca ade4 880s screeplot.dudi ade4 880s 880s Attaching package: 'adegraphics' 880s 880s The following objects are masked from 'package:ade4': 880s 880s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 880s s.label, s.logo, s.match, s.traject, s.value, table.value, 880s triangle.class 880s 880s > library(sp) 880s > library(lattice) 880s > 880s > pdf("nbgraph.pdf") 880s Loading required package: spdep 880s Loading required package: spData 880s > 880s > if(require(spdep)) { 880s + data(elec88, package = "ade4") 880s + coords <- sp::coordinates(elec88$Spatial) 880s + 880s + xyplot(coords[, 2] ~ coords[, 1], 880s + panel = function(...) {adeg.panel.nb(elec88$nb, coords)}) 880s + 880s + g1 <- s.label(coords, nb = elec88$nb, porigin.include = F, plabels.cex = 0.7, 880s + ppoints.cex = 2, Sp = elec88$Spatial, pSp.col = "red", pSp.alpha = 0.5) 880s + } 880s To access larger datasets in this package, install the spDataLarge 880s package with: `install.packages('spDataLarge', 880s repos='https://nowosad.github.io/drat/', type='source')` 880s Loading required package: sf 880s Warning: using units on a 32 bit system, which may not work correctly: https://bugs.debian.org/1102591 880s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 881s Warning: using s2 on a 32 bit system, which may not work correctly: https://bugs.debian.org/1104160 881s 881s Attaching package: 'spdep' 881s 881s The following object is masked from 'package:ade4': 881s 881s mstree 881s 881s > 881s 881s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 881s Copyright (C) 2025 The R Foundation for Statistical Computing 881s Platform: arm-unknown-linux-gnueabihf (32-bit) 881s 881s R is free software and comes with ABSOLUTELY NO WARRANTY. 881s You are welcome to redistribute it under certain conditions. 881s Type 'license()' or 'licence()' for distribution details. 881s 881s R is a collaborative project with many contributors. 881s Type 'contributors()' for more information and 881s 'citation()' on how to cite R or R packages in publications. 881s 881s Type 'demo()' for some demos, 'help()' for on-line help, or 881s 'help.start()' for an HTML browser interface to help. 881s Type 'q()' to quit R. 881s 881s > library(ade4) 881s > library(adegraphics) 882s Registered S3 methods overwritten by 'adegraphics': 882s method from 882s biplot.dudi ade4 882s kplot.foucart ade4 882s kplot.mcoa ade4 882s kplot.mfa ade4 882s kplot.pta ade4 882s kplot.sepan ade4 882s kplot.statis ade4 882s scatter.coa ade4 882s scatter.dudi ade4 882s scatter.nipals ade4 882s scatter.pco ade4 882s score.acm ade4 882s score.mix ade4 882s score.pca ade4 882s screeplot.dudi ade4 882s 882s Attaching package: 'adegraphics' 882s 882s The following objects are masked from 'package:ade4': 882s 882s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 882s s.label, s.logo, s.match, s.traject, s.value, table.value, 882s triangle.class 882s 882s > library(sp) 882s > pdf("panelSpatial.pdf") 882s > 882s > ## ex1 882s > data(mafragh, package = "ade4") 882s > dfxy1 <- coordinates(mafragh$Spatial) 882s > g1 <- s.label(dfxy1, Sp = mafragh$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(97), pgrid.draw = FALSE, plabels.cex = 0) 882s > 882s > 882s > ## ex2 882s > data(meuse, package = "sp") 882s > coordinates(meuse) <- ~ x + y 882s > data(meuse.grid, package = "sp") 882s > m <- SpatialPixelsDataFrame(points = meuse.grid[c("x", "y")], data = meuse.grid) 882s > data(meuse.riv) 882s > meuse.sr <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)), "meuse.riv"))) 882s > 882s > scale1 <- list("SpatialPolygonsRescale", offset = c(179900, 329600), scale = 500, fill = c("transparent", "black"), layout.scale.bar()) 882s > text11 <- list("sp.text", c(179900, 329700), "0") 882s > text21 <- list("sp.text", c(180400, 329700), "500 m") 882s > arrow1 <- list("SpatialPolygonsRescale", offset = c(178750, 332500), scale = 400, layout.north.arrow()) 882s > river <- list("sp.polygons", meuse.sr, fill = "lightblue") 882s > dfxy2 <- as.data.frame(coordinates(meuse)) 882s > g2 <- s.value(dfxy2, z = meuse[, 1]$cadmium, sp.layout = list(scale1, text11, text21, arrow1, river), Sp = m) 882s > 882s > fac <- meuse@data$ffreq 882s > levels(fac)[1] <- "1 in 2 years" 882s > levels(fac)[2] <- "1 in 10 years" 882s > levels(fac)[3] <- "1 in 50 years" 882s > arrow2 <- list("SpatialPolygonsRescale", layout.north.arrow(), offset = c(181750, 330000), scale = 400) 882s > scale2 <- list("SpatialPolygonsRescale", layout.scale.bar(), offset = c(178050, 333600), scale = 500, fill = c("transparent", "black")) 882s > text12 <- list("sp.text", c(178050, 333700), "0") 882s > text22 <- list("sp.text", c(178550, 333700), "500 m") 882s > g3 <- s.class(dfxy2, fac = fac, sp.layout = list(scale2, text12, text22, arrow2, river), starSize = 1, col = c(1, 2, 4), pellipses.col = c(1, 2, 4), 882s + pellipses.alpha = 0.7, plines.lty = 3, psub.text = "Flooding frequency \n near the Meuse river", psub.pos = c(0.2, 0.88), pgrid.text.cex = 0, 882s + porigin.include = FALSE, Sp = meuse.sr) 883s Loading required package: Guerry 883s > 883s > ## ex3 883s > if(require(Guerry)) { 883s + data(gfrance85) 883s + 883s + dfxy4 <- coordinates(gfrance85) 883s + region.names <- data.frame(gfrance85)[, 5] 883s + col.region <- colors()[c(149, 254, 468, 552, 26)] 883s + g4 <- s.class(dfxy4, region.names, ellip = 0, star = 0, col = col.region, Sp = gfrance85, pSp.col = col.region[region.names], porig.inclu = F) 883s + } 883s > 883s > ## ex4 883s > library(sp) 883s > library(lattice) 883s > 883s > data(elec88, package = "ade4") 883s > sp <- elec88$Spatial 883s > 883s > g5 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "black")}) 883s > g6 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(sp, col = 1:14, border = "black")}) 883s > g7 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], aspect = "iso", panel = function(...) {sp.polygons(sp, col = "black", fill = 1:5)}) 883s > g8 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 883s > g9 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 883s > #g10 <- s.label(cbind(-80, 35), Sp = nc) 883s > #g11 <- s.label(cbind(-80, 35), Sp = sp) 883s > 883s > 883s > ## ex5 883s > data(jv73, package = "ade4") 883s > g12 <- s.label(jv73$xy, Sp = jv73$Spatial) 883s > g13 <- s.label(jv73$xy, Sp = jv73$Spatial, pSp.col = "red") 883s > 883s > spoints <- SpatialPoints(jv73$xy) 883s > g14 <- s.label(jv73$xy, Sp = spoints, plab.cex = 0, ppoin.cex = 0, pSp.col = 1) 884s > 884s > sgrid <- SpatialGrid(GridTopology(c(0, 0), c(1, 1), c(3, 5))) 884s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(sgrid, col = 1:2)) 884s > 884s > nc <- SpatialGridDataFrame(getGridTopology(sgrid), data = data.frame(matrix(1:15, ncol = 1))) 884s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(nc, col = 1, at = pretty(rnorm(15), 2), col.region = 2:3)) 884s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:3)) 884s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:2)) 884s > 884s > 884s > ## ex6 884s > mysp <- SpatialPointsDataFrame(matrix(rnorm(20), 10), data.frame(matrix(rnorm(20), 10))) 884s > s.Spatial(mysp) 884s > s.Spatial(mysp, col = c("red", "blue")) 884s > s.Spatial(mysp, ppoints.cex = 2) 884s > s.Spatial(mysp, ppoints.alpha = 0.5) 884s > s.Spatial(mysp, symbol = "circle") 884s > s.Spatial(mysp, method = "color", ppalette.quanti = colorRampPalette(c("red", "white", "blue"))) 884s > 884s 884s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 884s Copyright (C) 2025 The R Foundation for Statistical Computing 884s Platform: arm-unknown-linux-gnueabihf (32-bit) 884s 884s R is free software and comes with ABSOLUTELY NO WARRANTY. 884s You are welcome to redistribute it under certain conditions. 884s Type 'license()' or 'licence()' for distribution details. 884s 884s R is a collaborative project with many contributors. 884s Type 'contributors()' for more information and 884s 'citation()' on how to cite R or R packages in publications. 884s 884s Type 'demo()' for some demos, 'help()' for on-line help, or 884s 'help.start()' for an HTML browser interface to help. 884s Type 'q()' to quit R. 884s 884s > library(ade4) 885s > library(adegraphics) 885s Registered S3 methods overwritten by 'adegraphics': 885s method from 885s biplot.dudi ade4 885s kplot.foucart ade4 885s kplot.mcoa ade4 885s kplot.mfa ade4 885s kplot.pta ade4 885s kplot.sepan ade4 885s kplot.statis ade4 885s scatter.coa ade4 885s scatter.dudi ade4 885s scatter.nipals ade4 885s scatter.pco ade4 885s score.acm ade4 885s score.mix ade4 885s score.pca ade4 885s screeplot.dudi ade4 885s > pdf("parameter.pdf") 885s 885s Attaching package: 'adegraphics' 885s 885s The following objects are masked from 'package:ade4': 885s 885s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 885s s.label, s.logo, s.match, s.traject, s.value, table.value, 885s triangle.class 885s 885s > 885s > adegparold <- adegpar() 885s > b1 <- length(adegraphics:::separation(plines = list(col = "blue"), plab.bo.dra = FALSE, plab = list(orien = F))$rest) == 0 885s > b2 <- length(adegraphics:::separation(plines = list(col = "blue", lwd = c(1:5)), parr.end = NA, plab.boxes.dr = FALSE)$rest) == 0 885s > b3 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 1)$rest) == 2 885s > b4 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 0)$rest) == 2 885s > b5 <- length(adegraphics:::separation()) == 2 885s > b6 <- length(adegraphics:::separation(par.sub.text = list("lineheight" = 5), pattern = 1)$rest) == 0 885s > b7 <- names(adegraphics:::separation(toto = "rienavoir!")$rest) == "toto" 885s > b8 <- names(adegraphics:::separation(toto = "rienavoir!", pattern = 1)$rest) == "toto" 885s > 885s > l1 <- list(parrow = list(col = "blue", lwd = c(1:5), end = NA), plboxes.draw = FALSE, pattern = 1) 885s > sep1 <- adegraphics:::separation(l1) ## no recognition of "pattern" in a list 885s > 885s > l2 <- list("parrow.lwd", "plboxes.draw") 885s > sep2 <- adegraphics:::separation(l2) 885s > 885s > sep3 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col")) 885s > sep4 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col" = 2)) 885s > sep5 <- adegraphics:::separation(pla.box = list(col = 1:5)) 885s > sep6 <- adegraphics:::separation(pla.box.col = c(1:5)) 885s > sep7 <- adegraphics:::separation(pla = list(box.col = 1:5)) ## don't match 885s > 885s > 885s > ## adegpar test 885s > ad1 <- adegpar() 885s > ad2 <- adegpar("paxes.draw") 885s > ad3 <- adegpar("paxes.draw", "psub.cex") 885s > 885s > ad4 <- adegpar("psub.cex" = 5) 885s > ad5 <- adegpar("psub.cex" = 5, paxes.draw = FALSE) 885s > ad6 <- adegpar("psub") 885s > ad7 <- adegpar("psub.cex", "plabe.boxes") 885s > 885s > ad8 <- adegpar(ppoints = list(col = "yellow"), pgrid.space = 4, plines = list(lwd = c(1:5))) 885s > ad9 <- adegpar(ppoints = list(col = "red"), pgrid = list(nint = 12), plines = list(lwd = c(1:5))) 885s > ad10 <- adegpar("ppoints.col", "pgrid.nint", "plines") 885s > 885s > ad11 <- adegpar(paxes = list("x"), pgrid = list("nint", "col")) 885s > ad12 <- adegpar(list(pellip = list(col = "red"), grid.nint = 8, plines = list(lwd = c(1:5)))) 885s > ad13 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"), "plines", "pellipse") 885s > 885s > ad14 <- adegpar(plegend.drawKey = FALSE) 885s > ad15 <- adegpar(list(paxes = list(col = "white"), pgrid.nint = 6, plines = list(lwd = c(1:5)))) 885s > ad16 <- adegpar(paxes = list(x = list(draw = TRUE))) 885s > 885s > adegpar(adegparold) 885s > 885s > ## merging list 885s > l3 <- list(plabels = list(boxes = list(col = "white", alpha = 1)), plabels = list(cex = 2), plabels = list(col = "red")) 885s > adegraphics:::.mergingList(l3) 885s $plabels 885s $plabels$boxes 885s $plabels$boxes$col 885s [1] "white" 885s 885s $plabels$boxes$alpha 885s [1] 1 885s 885s 885s $plabels$cex 885s [1] 2 885s 885s $plabels$col 885s [1] "red" 885s 885s 885s > adegraphics:::.mergingList(list(plabels = list(cex = 3))) 885s $plabels 885s $plabels$cex 885s [1] 3 885s 885s 885s > 885s > 885s > ## update parameters in graphics 885s > cha <- rep(LETTERS, length.out = 100) 885s > xy <- cbind.data.frame(runif(length(cha)), runif(length(cha))) 885s > g1 <- s.label(xy, labels = cha, paxes.draw = TRUE, plabels.cex = runif(length(cha), 0.5, 1.5)) 885s > update(g1, paxes = list(aspect = "fill", draw = TRUE, x = list(draw = FALSE)), 885s + pgrid = list(col = "black", lwd = 2, lty = 5), 885s + plabels = list(col = 1:4, alpha = 0.5, cex = 2, boxes = list(border = "blue", col = "antiquewhite", alpha = 0.2, lwd = 2.5, lty = 5))) 885s > 885s > g2 <- s.label(xy, labels = cha) 886s > update(g2, paxes.draw = FALSE, pgrid = list(col = "blue", lwd = 2, lty = 5, text = list(pos = "bottomright", cex = 2, col = "green"))) 886s > update(g2, porigin = list(alpha = 0.5, col = "red", lty = 5 , lwd = 2, origin = c(0.6, 0.1)), pgrid.lwd = 0.5) 886s > update(g2, psub = list(text = "parameters", cex = 2, col = "red", position = "topright")) 886s > update(g2, plabels.cex = 0, ppoints = list(alpha = 0.4, cex = 2, col = "red", fill = "blue", pch = 21)) 886s > 886s > 886s > ## from tdr641 886s > data(doubs, package = "ade4") 886s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scannf = F, nf = 3) 886s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scannf = F, nf = 2) 886s > coin1 <- ade4::coinertia(dudi1, dudi2, scannf = F, nf = 2) 886s > g3 <- s.arrow(coin1$l1, plabels.cex = .87) 886s > update(g3, plines = list(col = "blue", lwd = 2, lty = 3), parr.end = "both", parr = list(angle = 25, length = 0.5)) 886s > 886s > ## with spatial object 886s > data(elec88, package = "ade4") 886s > g4 <- s.label(elec88$xy, label = as.character(1:nrow(elec88$xy)), porigin.include = FALSE, Sp = elec88$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(5), pgrid.draw = TRUE) 887s > update(g4, pSp = list(col = "yellow", border = "blue", lwd = 2, lty = 5, alpha = 0.01)) ## don't match : to solve 887s > 887s > ## plabels parameter 887s > data(tortues, package = "ade4") 887s > pturtles <- tortues 887s > names(pturtles) <- c("length", "width", "height", "sex") 887s > sex <- pturtles$sex 887s > sexcol <- ifelse(sex == "M", "blue", "red") 887s > measures <- pturtles[, 1:3] 887s > pca1 <- ade4::dudi.pca(measures, scann = FALSE, nf = 3) 887s > g5 <- scatter(pca1, row.plabel.cex = 0, col.plabel.cex = c(1, 2, 3), posieig = "none", col.plabel.col = c("red", "blue", "green")) 887s > 888s 888s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 888s Copyright (C) 2025 The R Foundation for Statistical Computing 888s Platform: arm-unknown-linux-gnueabihf (32-bit) 888s 888s R is free software and comes with ABSOLUTELY NO WARRANTY. 888s You are welcome to redistribute it under certain conditions. 888s Type 'license()' or 'licence()' for distribution details. 888s 888s R is a collaborative project with many contributors. 888s Type 'contributors()' for more information and 888s 'citation()' on how to cite R or R packages in publications. 888s 888s Type 'demo()' for some demos, 'help()' for on-line help, or 888s 'help.start()' for an HTML browser interface to help. 888s Type 'q()' to quit R. 888s 888s > library(adegraphics) 888s Registered S3 methods overwritten by 'adegraphics': 888s method from 888s biplot.dudi ade4 888s kplot.foucart ade4 888s kplot.mcoa ade4 888s kplot.mfa ade4 888s kplot.pta ade4 888s kplot.sepan ade4 888s kplot.statis ade4 888s scatter.coa ade4 888s scatter.dudi ade4 888s scatter.nipals ade4 888s scatter.pco ade4 888s score.acm ade4 888s score.mix ade4 888s score.pca ade4 888s screeplot.dudi ade4 888s > pdf("s.arrow.pdf") 888s > 888s > ## ex1 : from tdr641 888s > data(doubs, package = "ade4") 888s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scan = F, nf = 3) 888s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scan = F, nf = 2) 888s > coin1 <- ade4::coinertia(dudi1, dudi2, scan = F, nf = 2) 888s > g1 <- s.arrow(coin1$l1, plabels.cex = 0.87) 888s > g2 <- s.arrow(coin1$c1, plabels.cex = 1) 889s > 889s > ## ex2 : from bs81 889s > data(granulo, package = "ade4") 889s > w <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 889s > g3 <- s.arrow(ade4::dudi.pca(data.frame(w), scan = F, nf = 2)$co) 889s > 889s > wtr <- data.frame(t(w)) 889s > wmoy <- data.frame(matrix(apply(wtr, 1, mean), 1)) 889s > dudi3 <- ade4::dudi.pca(w, scal = FALSE, scan = FALSE) 889s > wmoy <- ade4::suprow(dudi3, wmoy)$lisup 889s > 889s > g4 <- s.arrow(dudi3$c1, plabels.cex = 1.5) 889s > g4 <- s.distri(dudi3$c1, wtr, starSize = 0.33, ellipseSize = 0, add = TRUE, plabels.cex = 1) 889s > g4 <- s.label(wmoy, ppoint.cex = 5, plabels.cex = 0, add = TRUE) 889s > 889s > ## ex3 889s > data(deug, package = "ade4") 889s > pca1 <- ade4::dudi.pca(deug$tab, scal = FALSE, center = deug$cent, scan = FALSE) 889s > g5 <- s.arrow(40 * pca1$c1) 889s > 889s > ## ex4 889s > xy <- cbind(rnorm(50), rnorm(50)) 889s > g6 <- s.arrow(xy, plabels.cex = 0.9, parrows = list(angle = 20)) 889s > 889s 889s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 889s Copyright (C) 2025 The R Foundation for Statistical Computing 889s Platform: arm-unknown-linux-gnueabihf (32-bit) 889s 889s R is free software and comes with ABSOLUTELY NO WARRANTY. 889s You are welcome to redistribute it under certain conditions. 889s Type 'license()' or 'licence()' for distribution details. 889s 889s R is a collaborative project with many contributors. 889s Type 'contributors()' for more information and 889s 'citation()' on how to cite R or R packages in publications. 889s 889s Type 'demo()' for some demos, 'help()' for on-line help, or 889s 'help.start()' for an HTML browser interface to help. 889s Type 'q()' to quit R. 889s 889s > library(adegraphics) 890s Registered S3 methods overwritten by 'adegraphics': 890s method from 890s biplot.dudi ade4 890s kplot.foucart ade4 890s kplot.mcoa ade4 890s kplot.mfa ade4 890s kplot.pta ade4 890s kplot.sepan ade4 890s kplot.statis ade4 890s scatter.coa ade4 890s scatter.dudi ade4 890s scatter.nipals ade4 890s scatter.pco ade4 890s score.acm ade4 890s score.mix ade4 890s score.pca ade4 890s screeplot.dudi ade4 890s > pdf("s.class.pdf") 890s > 890s > xy0 <- cbind.data.frame(x = runif(20, -1, 1), y = runif(20, -1, 6)) 890s > basic <- s.class(xy0, fac = factor(rep(c("A", "B"), le = 20)), chull = 0, star = 0) 890s > 890s > xy1 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 6)) 890s > fac1 <- factor(xy1$x > 0) : factor(xy1$y > 0) 890s > g1 <- s.class(xy1, fac = fac1, storeData = F, col = 1:4, pbackground.box = T, pbackground.col = grey(0.85), paxes.draw = T, ell = 0) 890s > 890s > ## multiaxis 890s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, .5)) 890s > fac2 <- factor(xy2$x > 0) 890s > g2 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, storeData = F, plot = F) 890s > print(g2) 890s > 890s > ## insertion 890s > print(ADEgS(list(g1, g2), posi = rbind(c(0, 0, 1, 1), c(0.7, 0.5, 1, 0.9)))) 891s > 891s > ## color test 891s > g3 <- s.class(xy1, fac = fac2, psub.text = "Graphic 3", "ppoints.col" = 1:5, plabels.boxes = list(col = "white", alpha = 0.8), pellipses.col = 1:5, col = 1:5) 891s > 891s > ## test convex hull and parameters 891s > xy4 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 891s > fac4 <- factor(xy4$x > 0) : factor(xy4$y > 0) 891s > col <- c("black", "red", "green", "blue") 891s > g4 <- s.class(xy4, fac4, ppoints.cex = 1.5, chull = T, ellipseSize = 0, starSize = 0, ppolygon = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4)) 891s > 891s > 891s 891s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 891s Copyright (C) 2025 The R Foundation for Statistical Computing 891s Platform: arm-unknown-linux-gnueabihf (32-bit) 891s 891s R is free software and comes with ABSOLUTELY NO WARRANTY. 891s You are welcome to redistribute it under certain conditions. 891s Type 'license()' or 'licence()' for distribution details. 891s 891s R is a collaborative project with many contributors. 891s Type 'contributors()' for more information and 891s 'citation()' on how to cite R or R packages in publications. 891s 891s Type 'demo()' for some demos, 'help()' for on-line help, or 891s 'help.start()' for an HTML browser interface to help. 891s Type 'q()' to quit R. 891s 891s > library(adegraphics) 891s Registered S3 methods overwritten by 'adegraphics': 891s method from 891s biplot.dudi ade4 891s kplot.foucart ade4 891s kplot.mcoa ade4 891s kplot.mfa ade4 891s kplot.pta ade4 891s kplot.sepan ade4 891s kplot.statis ade4 891s scatter.coa ade4 891s scatter.dudi ade4 891s scatter.nipals ade4 891s scatter.pco ade4 891s score.acm ade4 891s score.mix ade4 891s score.pca ade4 891s screeplot.dudi ade4 891s > pdf("s.corcircle.pdf") 891s > data(olympic, package = "ade4") 891s > 891s > dudi1 <- ade4::dudi.pca(olympic$tab, scan = FALSE) # a normed PCA 891s > g1 <- s.corcircle(dudi1$co, lab = names(olympic$tab)) 892s > 892s > g2 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = T) 892s > g3 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = FALSE) 892s > g4 <- s.corcircle(dudi1$co, lab = names(olympic$tab), pback.col = "red", pbackground.box = FALSE) 892s > 892s 892s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 892s Copyright (C) 2025 The R Foundation for Statistical Computing 892s Platform: arm-unknown-linux-gnueabihf (32-bit) 892s 892s R is free software and comes with ABSOLUTELY NO WARRANTY. 892s You are welcome to redistribute it under certain conditions. 892s Type 'license()' or 'licence()' for distribution details. 892s 892s R is a collaborative project with many contributors. 892s Type 'contributors()' for more information and 892s 'citation()' on how to cite R or R packages in publications. 892s 892s Type 'demo()' for some demos, 'help()' for on-line help, or 892s 'help.start()' for an HTML browser interface to help. 892s Type 'q()' to quit R. 892s 892s > library(adegraphics) 892s Registered S3 methods overwritten by 'adegraphics': 892s method from 892s biplot.dudi ade4 892s kplot.foucart ade4 892s kplot.mcoa ade4 892s kplot.mfa ade4 892s kplot.pta ade4 892s kplot.sepan ade4 892s kplot.statis ade4 892s scatter.coa ade4 892s scatter.dudi ade4 892s scatter.nipals ade4 892s scatter.pco ade4 892s score.acm ade4 892s score.mix ade4 892s score.pca ade4 892s screeplot.dudi ade4 893s > pdf("s.density.pdf") 893s > 893s > xx1 <- rnorm(1000, 1, 2) 893s > yy1 <- rnorm(1000, 1, 2) 893s > 893s > g1 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(40, 40)) 893s > g2 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(80, 80), col = colorRampPalette(c("red", "blue"))(58), storeData = FALSE, region = TRUE) 893s > g3 <- s.density(cbind(yy1 + 3, xx1 + 3), gridsize = c(400, 400)) 893s > g4 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(200, 200), add = TRUE) 893s > g5 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(200, 200), region = TRUE, contour = TRUE, plabels.cex = 1, plabels.srt = "vertial") 894s > g6 <- s.density(cbind(rnorm(300, 3, 0.3), rnorm(300, -2, 0.5)), gridsize = c(500, 500), thres = 0.01, nr = 10, regions = list(alpha = 0.5), col = colorRampPalette(c("red", "blue"))(108)) 895s > g7 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(100, 100), region = TRUE, contour = TRUE, plabels.cex = 1, nclass = 5) 895s > 895s 895s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 895s Copyright (C) 2025 The R Foundation for Statistical Computing 895s Platform: arm-unknown-linux-gnueabihf (32-bit) 895s 895s R is free software and comes with ABSOLUTELY NO WARRANTY. 895s You are welcome to redistribute it under certain conditions. 895s Type 'license()' or 'licence()' for distribution details. 895s 895s R is a collaborative project with many contributors. 895s Type 'contributors()' for more information and 895s 'citation()' on how to cite R or R packages in publications. 895s 895s Type 'demo()' for some demos, 'help()' for on-line help, or 895s 'help.start()' for an HTML browser interface to help. 895s Type 'q()' to quit R. 895s 896s > library(adegraphics) 896s Registered S3 methods overwritten by 'adegraphics': 896s method from 896s biplot.dudi ade4 896s kplot.foucart ade4 896s kplot.mcoa ade4 896s kplot.mfa ade4 896s kplot.pta ade4 896s kplot.sepan ade4 896s kplot.statis ade4 896s scatter.coa ade4 896s scatter.dudi ade4 896s scatter.nipals ade4 896s scatter.pco ade4 896s score.acm ade4 896s score.mix ade4 896s score.pca ade4 896s screeplot.dudi ade4 896s > pdf("s.distri.pdf") 896s > 896s > xy5 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 896s > w1 <- as.numeric((xy5$x > 0) & (xy5$y > 0)) 896s > w2 <- ((xy5$x > 0) & (xy5$y < 0)) * (1 - xy5$y) * xy5$x 896s > w3 <- ((xy5$x < 0) & (xy5$y > 0)) * (1 - xy5$x) * xy5$y 896s > w4 <- ((xy5$x < 0) & (xy5$y < 0)) * xy5$y * xy5$x 896s > distri <- data.frame(a = w1 / sum(w1), b = w2 / sum(w2), c = w3 / sum(w3), d = w4 / sum(w4)) 896s > g5 <- s.distri(xy5, distri, plabels.boxes = list(col = "white", alpha = 1), plabels.cex = 2, plabels.col = 1:5) 896s > 896s > data(rpjdl, package = "ade4") 896s > xy6 <- ade4::dudi.coa(rpjdl$fau, scan = FALSE)$li + 3 896s > g6 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1))) 896s > g7 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin = list(include = FALSE), pellipses.axes.col = "blue") 897s > 897s > ## test add 897s > g8 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "blue")) 897s > g9 <- s.distri(xy6, rpjdl$fau[, 12], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "red"), add = TRUE) 897s > show(g9) ## g8 is a superposition, an ADEgS object 897s > 897s > ## add 897s > index <- c(1, 5, 8, 20, 21, 23, 26, 33, 36, 44, 47, 49) 897s > col <- colorRampPalette(c("blue", "red", "orange"))(49) 897s > s.distri(xy6, rpjdl$fau[, 1], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[1], alpha = 0.3)) 897s > for(i in index[-1]) 897s + s.distri(xy6, rpjdl$fau[, i], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[i], alpha = 0.3), add = TRUE) 897s > 897s > current <- get("currentadeg", env = adegraphics:::.ADEgEnv) 897s > print(current[[6]]) 897s > length(current) == length(index) 897s [1] TRUE 897s > 897s 897s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 897s Copyright (C) 2025 The R Foundation for Statistical Computing 897s Platform: arm-unknown-linux-gnueabihf (32-bit) 897s 897s R is free software and comes with ABSOLUTELY NO WARRANTY. 897s You are welcome to redistribute it under certain conditions. 897s Type 'license()' or 'licence()' for distribution details. 897s 897s R is a collaborative project with many contributors. 897s Type 'contributors()' for more information and 897s 'citation()' on how to cite R or R packages in publications. 897s 897s Type 'demo()' for some demos, 'help()' for on-line help, or 897s 'help.start()' for an HTML browser interface to help. 897s Type 'q()' to quit R. 897s 897s > library(adegraphics) 898s Registered S3 methods overwritten by 'adegraphics': 898s method from 898s biplot.dudi ade4 898s kplot.foucart ade4 898s kplot.mcoa ade4 898s kplot.mfa ade4 898s kplot.pta ade4 898s kplot.sepan ade4 898s kplot.statis ade4 898s scatter.coa ade4 898s scatter.dudi ade4 898s scatter.nipals ade4 898s scatter.pco ade4 898s score.acm ade4 898s score.mix ade4 898s score.pca ade4 898s screeplot.dudi ade4 898s > library(sp) 898s > pdf("s.image.pdf") 898s > 898s > ## ex1 898s > xy <- data.frame(expand.grid(-3:3, -3:3)) 898s > names(xy) <- c("x", "y") 898s > z <- (1 / sqrt(2)) * exp(-(xy$x ^ 2 + xy$y ^ 2) / 2) 898s > s.image(xy, z) 898s > s.image(xy, z, grid = 20) 898s > s.image(xy, z, grid = 500) 899s > 899s > ## ex2 899s > Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0 , -2, -1, -2, -1, 0), c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5))) 899s > Srs1 <- Polygons(list(Sr1), ID = "stars") 899s > SPp1 <- SpatialPolygons(list(Srs1)) 899s > xy1 <- cbind(rnorm(100, 0, 1), rnorm(100, 0, 1.5)) 899s > g1 <- s.image(xy1, runif(100), outsideLimits = SPp1) 899s > 899s > ## ex3 899s > Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE) 899s > Srs2 <- Polygons(list(Sr1, Sr2), ID = "hole") 899s > SPp2 <- SpatialPolygons(list(Srs2)) 899s > xy2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), rnorm(3000, -1, 3))) 899s > z <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2)) 899s > g2 <- s.image(xy2, z, outsideLimits = SPp2, grid = 500, xlim = c(-2.5, 2.5), ylim = c(-2, 3)) 900s > 900s 900s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 900s Copyright (C) 2025 The R Foundation for Statistical Computing 900s Platform: arm-unknown-linux-gnueabihf (32-bit) 900s 900s R is free software and comes with ABSOLUTELY NO WARRANTY. 900s You are welcome to redistribute it under certain conditions. 900s Type 'license()' or 'licence()' for distribution details. 900s 900s R is a collaborative project with many contributors. 900s Type 'contributors()' for more information and 900s 'citation()' on how to cite R or R packages in publications. 900s 900s Type 'demo()' for some demos, 'help()' for on-line help, or 900s 'help.start()' for an HTML browser interface to help. 900s Type 'q()' to quit R. 900s 901s > library(adegraphics) 901s Registered S3 methods overwritten by 'adegraphics': 901s method from 901s biplot.dudi ade4 901s kplot.foucart ade4 901s kplot.mcoa ade4 901s kplot.mfa ade4 901s kplot.pta ade4 901s kplot.sepan ade4 901s kplot.statis ade4 901s scatter.coa ade4 901s scatter.dudi ade4 901s scatter.nipals ade4 901s scatter.pco ade4 901s score.acm ade4 901s score.mix ade4 901s score.pca ade4 901s screeplot.dudi ade4 901s > library(grid) 901s > pdf("s.label.pdf") 901s > 901s > x0 <- runif(50, -2, 2) 901s > y0 <- runif(50, -2, 2) 901s > z <- x0 ^ 2 + y0 ^ 2 901s > dfxy1 <- data.frame(x0, y0) 901s > g1 <- s.label(dfxy1, label = as.character(z < 1), paxes.draw = TRUE, axis.text = list(col = "grey")) 901s > g2 <- s.label(dfxy1[1, ]) 901s > g3 <- s.label(dfxy1[1, ], pori.incl = FALSE) 902s > g4 <- s.label(dfxy1, labels = c("", "MM", "", NA, "ooo"), plabels.optim = TRUE) 902s > g5 <- s.label(dfxy1, labels = as.character(z < 1), psub = list(text = "Subtitle", col = "blue", position = "topleft"), plabels.col = 1:5, pgrid.text.pos = c(unit(0.95, "npc"), unit(0.94, "npc"))) 902s > 902s > dfxy2 <- cbind(dfxy1, runif(50, -5, 5)) 902s > g6 <- s.label(dfxy2, xax = 1, yax = 2:3, paxes.draw = TRUE, paxes.aspectratio = 1.5, plabels.cex = 0.8) 902s > 902s > l <- ls() 902s > x1 <- runif(length(l)) 902s > x2 <- runif(100) 902s > y1 <- runif(length(l)) 902s > y2 <- runif(100) 902s > g7 <- s.label(cbind(x2, y2), labels = as.character((x2 * x2 + y2 * y2) < 1)) 902s > g8 <- s.label(cbind(x1, y1), labels = l, add = TRUE, plabels.col = "blue") 902s > 902s 902s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 902s Copyright (C) 2025 The R Foundation for Statistical Computing 902s Platform: arm-unknown-linux-gnueabihf (32-bit) 902s 902s R is free software and comes with ABSOLUTELY NO WARRANTY. 902s You are welcome to redistribute it under certain conditions. 902s Type 'license()' or 'licence()' for distribution details. 902s 902s R is a collaborative project with many contributors. 902s Type 'contributors()' for more information and 902s 'citation()' on how to cite R or R packages in publications. 902s 902s Type 'demo()' for some demos, 'help()' for on-line help, or 902s 'help.start()' for an HTML browser interface to help. 902s Type 'q()' to quit R. 902s 902s > library(adegraphics) 903s Registered S3 methods overwritten by 'adegraphics': 903s method from 903s biplot.dudi ade4 903s kplot.foucart ade4 903s kplot.mcoa ade4 903s kplot.mfa ade4 903s kplot.pta ade4 903s kplot.sepan ade4 903s kplot.statis ade4 903s scatter.coa ade4 903s scatter.dudi ade4 903s scatter.nipals ade4 903s scatter.pco ade4 903s score.acm ade4 903s score.mix ade4 903s score.pca ade4 903s screeplot.dudi ade4 903s > pdf("s.logo.pdf") 903s > 903s > ## ex1 903s > data(ggtortoises, package = "ade4") 903s > ico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)] 903s > g1 <- s.logo(ggtortoises$pop, ico, pori.incl = FALSE) 903s Loading required namespace: pixmap 903s > g2 <- s.label(ggtortoises$pop, add = TRUE, plabels = list(boxes = list(alpha = 0.4, border = "transparent"))) 903s > 903s > ## ex2 903s > data(capitales, package = "ade4") 903s > index <- unlist(lapply(1:15, function(i) which(names(capitales$logo) == tolower(rownames(capitales$xy)[i]))), use.names = FALSE) 903s > g3 <- s.logo(capitales$xy, capitales$logo[index]) 903s > 903s > x <- c(0, max(capitales$area$x)) 903s > y <- c(0, max(capitales$area$y)) 903s > #g4 <- s.image(cbind(x, y), z = c(1, 2), outsideLimits = capitales$area, grid = 500, regions = list(col = "yellow", alpha = 0.9)) 903s > #s.logo(capitales$xy, capitales$logo[index], add = TRUE) 903s > 904s 904s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 904s Copyright (C) 2025 The R Foundation for Statistical Computing 904s Platform: arm-unknown-linux-gnueabihf (32-bit) 904s 904s R is free software and comes with ABSOLUTELY NO WARRANTY. 904s You are welcome to redistribute it under certain conditions. 904s Type 'license()' or 'licence()' for distribution details. 904s 904s R is a collaborative project with many contributors. 904s Type 'contributors()' for more information and 904s 'citation()' on how to cite R or R packages in publications. 904s 904s Type 'demo()' for some demos, 'help()' for on-line help, or 904s 'help.start()' for an HTML browser interface to help. 904s Type 'q()' to quit R. 904s 904s > library(adegraphics) 904s Registered S3 methods overwritten by 'adegraphics': 904s method from 904s biplot.dudi ade4 904s kplot.foucart ade4 904s kplot.mcoa ade4 904s kplot.mfa ade4 904s kplot.pta ade4 904s kplot.sepan ade4 904s kplot.statis ade4 904s scatter.coa ade4 904s scatter.dudi ade4 904s scatter.nipals ade4 904s scatter.pco ade4 904s score.acm ade4 904s score.mix ade4 904s score.pca ade4 904s screeplot.dudi ade4 904s > pdf("s.match.pdf") 904s > 904s > X <- data.frame(x = runif(50, -1, 2), y = runif(50, -1, 2)) 904s > Y <- X + rnorm(100, sd = 0.3) 904s > 904s > g1 <- s.match(X, Y, ppoints.cex = 0, col = c("blue", "red")) 904s > g2 <- s.match(X, Y, arr = FALSE, ppoints.cex = 2, ppoints.col = c("blue", "green")) 904s > g3 <- s.match(X, Y, arr = FALSE) 905s > g4 <- s.match(X, Y, arrows = TRUE, plabels = list(alpha = 1, col = "black", cex = 1), plines = list(col = "red"), panel.background = list(col = "antiquewhite")) 905s > 905s 905s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 905s Copyright (C) 2025 The R Foundation for Statistical Computing 905s Platform: arm-unknown-linux-gnueabihf (32-bit) 905s 905s R is free software and comes with ABSOLUTELY NO WARRANTY. 905s You are welcome to redistribute it under certain conditions. 905s Type 'license()' or 'licence()' for distribution details. 905s 905s R is a collaborative project with many contributors. 905s Type 'contributors()' for more information and 905s 'citation()' on how to cite R or R packages in publications. 905s 905s Type 'demo()' for some demos, 'help()' for on-line help, or 905s 'help.start()' for an HTML browser interface to help. 905s Type 'q()' to quit R. 905s 905s > library(adegraphics) 905s Registered S3 methods overwritten by 'adegraphics': 905s method from 905s biplot.dudi ade4 905s kplot.foucart ade4 905s kplot.mcoa ade4 905s kplot.mfa ade4 905s kplot.pta ade4 905s kplot.sepan ade4 905s kplot.statis ade4 905s scatter.coa ade4 905s scatter.dudi ade4 905s scatter.nipals ade4 905s scatter.pco ade4 905s score.acm ade4 905s score.mix ade4 905s score.pca ade4 905s screeplot.dudi ade4 905s > pdf("s.traject.pdf") 905s > 905s > rw <- function(a){ 905s + x <- 0 905s + for(i in 1:49) 905s + x <- c(x, x[length(x)] + runif(1, -1, 1)) 905s + x 905s + } 905s > 905s > x <- unlist(lapply(1:5, rw), use.names = FALSE) 906s > y <- unlist(lapply(1:5, rw), use.names = FALSE) 906s > z <- gl(5, 50) 906s > g1 <- s.traject(data.frame(x, y), z, ppoints.pch = 19:23, plines.col = rainbow(5)) 906s > 906s > x <- unlist(lapply(1:2, rw), use.names = FALSE) 906s > y <- unlist(lapply(1:2, rw), use.names = FALSE) 906s > z <- gl(2, 50) 906s > g2 <- s.traject(data.frame(x, y), z, ppoints.pch = 21:20, plines.col = 1:2) 906s > 906s 906s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 906s Copyright (C) 2025 The R Foundation for Statistical Computing 906s Platform: arm-unknown-linux-gnueabihf (32-bit) 906s 906s R is free software and comes with ABSOLUTELY NO WARRANTY. 906s You are welcome to redistribute it under certain conditions. 906s Type 'license()' or 'licence()' for distribution details. 906s 906s R is a collaborative project with many contributors. 906s Type 'contributors()' for more information and 906s 'citation()' on how to cite R or R packages in publications. 906s 906s Type 'demo()' for some demos, 'help()' for on-line help, or 906s 'help.start()' for an HTML browser interface to help. 906s Type 'q()' to quit R. 906s 906s > library(adegraphics) 906s Registered S3 methods overwritten by 'adegraphics': 906s method from 906s biplot.dudi ade4 906s kplot.foucart ade4 906s kplot.mcoa ade4 906s kplot.mfa ade4 906s kplot.pta ade4 906s kplot.sepan ade4 906s kplot.statis ade4 906s scatter.coa ade4 906s scatter.dudi ade4 906s scatter.nipals ade4 906s scatter.pco ade4 906s score.acm ade4 906s score.mix ade4 906s score.pca ade4 906s screeplot.dudi ade4 907s > pdf("s.value.pdf") 907s > 907s > ## ex1 907s > xy <- cbind.data.frame(x = runif(50, -1, 1), y = runif(50, 0, 2)) 907s > z <- rnorm(50) 907s > z <- sapply(z, function(X) max(X, -3)) 907s > z <- sapply(z, function(X) min(X, 3)) 907s > val1 <- s.value(xy, z, method = "size", symbol = "square", plot = F) 907s > val2 <- s.value(xy, z, method = "color", symbol = "square", plot = F) 907s > val3 <- s.value(xy, z, method = "size", symbol = "circle", plot = F) 907s > val4 <- s.value(xy, z, method = "color", symbol = "circle", plot = F) 907s > g1 <- ADEgS(c(val1, val2, val3, val4), positions = layout2position(matrix(c(1, 2, 3, 4), 2, 2)), add = matrix(0, ncol = 4, nrow = 4)) 907s > g2 <- s.value(xy, z, method = "color", symbol = "square", breaks = c(-3, -1, -0.5, 0, 0.5, 1, 3)) 907s > g3 <- s.value(xy, z, method = "color", col = colorRampPalette(c("yellow", "blue"))(6)) 907s > g4 <- s.value(xy, z, method = "size", symbol = "circle", paxes.draw = FALSE) 907s > 907s > ## ex2 907s > xx <- runif(100) * 100 907s > yy <- 1:100 907s > zz <- 1:100 907s > breaks <- c(0, 25, 50, 75, 100) 907s > g5 <- s.value(data.frame(xx, yy), zz, breaks = breaks, method = "color", paxes.draw = TRUE, porigin.include = FALSE) 907s > g6 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), breaks = breaks, method = "color", col = c("blue", "red", "green", "yellow"), paxes.draw = TRUE) 907s > g7 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), nclass = c(2, 6), method = "color", col = c("blue", "red", "pink", "green", "yellow"), paxes.draw = TRUE) 908s > 908s > ## ex3 908s > data(rpjdl, package = "ade4") 908s > fau.coa <- ade4::dudi.coa(rpjdl$fau, scan = FALSE, nf = 3) 908s > val5 <- s.value(fau.coa$li, fau.coa$li[,3], plot = FALSE) 908s > val6 <- s.value(fau.coa$li, fau.coa$li[, 3], center = 0, method = "size", symbol = "circle", col = c("yellow", "red"), plot = FALSE) 908s > g8 <- ADEgS(c(val5, val6), positions = layout2position(matrix(c(1, 2), 1, 2)), add = matrix(0, ncol = 2, nrow = 2)) 908s > 908s > ## ex3 908s > data(doubs, package = "ade4") 908s > g9 <- s.value(doubs$xy, doubs$env[, 1:2]) 908s > g10 <- s.value(doubs$xy, doubs$env) 909s > 909s 909s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 909s Copyright (C) 2025 The R Foundation for Statistical Computing 909s Platform: arm-unknown-linux-gnueabihf (32-bit) 909s 909s R is free software and comes with ABSOLUTELY NO WARRANTY. 909s You are welcome to redistribute it under certain conditions. 909s Type 'license()' or 'licence()' for distribution details. 909s 909s R is a collaborative project with many contributors. 909s Type 'contributors()' for more information and 909s 'citation()' on how to cite R or R packages in publications. 909s 909s Type 'demo()' for some demos, 'help()' for on-line help, or 909s 'help.start()' for an HTML browser interface to help. 909s Type 'q()' to quit R. 909s 909s > library(ade4) 909s > library(adegraphics) 909s Registered S3 methods overwritten by 'adegraphics': 909s method from 909s biplot.dudi ade4 909s kplot.foucart ade4 909s kplot.mcoa ade4 909s kplot.mfa ade4 909s kplot.pta ade4 909s kplot.sepan ade4 909s kplot.statis ade4 909s scatter.coa ade4 909s scatter.dudi ade4 909s scatter.nipals ade4 909s scatter.pco ade4 909s score.acm ade4 909s score.mix ade4 909s score.pca ade4 909s screeplot.dudi ade4 909s 909s Attaching package: 'adegraphics' 909s 909s The following objects are masked from 'package:ade4': 909s 909s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 909s s.label, s.logo, s.match, s.traject, s.value, table.value, 909s triangle.class 909s 909s > pdf("s1d.barchart.pdf") 909s > 909s > ## 1 : reverse and horizontal 909s > set.seed(40) 909s > x1 <- rnorm(10) 909s > g11 <- s1d.barchart(x1) 909s > g12 <- s1d.barchart(x1, ppoly.col = "blue") 910s > 910s > g21 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = TRUE) 910s > g23 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = FALSE) 910s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = TRUE) 910s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = FALSE) 910s > 910s > ## 2 : at and sort 910s > data(rpjdl, package = "ade4") 910s > rpjdl.coa <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 910s > nam <- rownames(rpjdl.coa$co) 910s > gg1 <- s1d.barchart(rpjdl.coa$co[, 1]) 910s > gg2 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, at = 51:1) 910s > gg3 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE) 910s > gg4 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE, at = 51:1) # 'at' is ignored 910s > gg5 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = TRUE) 910s > gg6 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = FALSE) 910s > stopifnot(gg6[[1]]@data$labels == gg6[[2]]@data$labels) 910s > 910s 910s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 910s Copyright (C) 2025 The R Foundation for Statistical Computing 910s Platform: arm-unknown-linux-gnueabihf (32-bit) 910s 910s R is free software and comes with ABSOLUTELY NO WARRANTY. 910s You are welcome to redistribute it under certain conditions. 910s Type 'license()' or 'licence()' for distribution details. 910s 910s R is a collaborative project with many contributors. 910s Type 'contributors()' for more information and 910s 'citation()' on how to cite R or R packages in publications. 910s 910s Type 'demo()' for some demos, 'help()' for on-line help, or 910s 'help.start()' for an HTML browser interface to help. 910s Type 'q()' to quit R. 910s 910s > library(adegraphics) 911s Registered S3 methods overwritten by 'adegraphics': 911s method from 911s biplot.dudi ade4 911s kplot.foucart ade4 911s kplot.mcoa ade4 911s kplot.mfa ade4 911s kplot.pta ade4 911s kplot.sepan ade4 911s kplot.statis ade4 911s scatter.coa ade4 911s scatter.dudi ade4 911s scatter.nipals ade4 911s scatter.pco ade4 911s score.acm ade4 911s score.mix ade4 911s score.pca ade4 911s screeplot.dudi ade4 911s > pdf("s1d.boxplot.pdf") 911s > 911s > ## ex1 911s > x <- c(rnorm(10), rnorm(10)) 911s > fact <- factor(rep(c("A", "B"), 10)) 911s > g11 <- s1d.boxplot(x, fact) 911s > g12 <- s1d.boxplot(x, fact, col = TRUE) 911s > g12 <- s1d.boxplot(x, fact, col = 2:3) 911s > g12 <- s1d.boxplot(x, fact, col = TRUE, plines.col = "black") 911s > 911s > g2 <- s1d.boxplot(x, fact, ppolygon.border = c("red", "blue"), box.rectangle = list(alpha = 1, fill = "green")) 911s > 911s > ## ex2 911s > w1 <- rnorm(100, -1) 911s > w2 <- rnorm(100) 911s > w3 <- rnorm(100, 1) 911s > f1 <- gl(3, 100) 911s > f2 <- gl(30, 10) 911s > g3 <- s1d.boxplot(c(w1, w2, w3), f1) 911s > g4 <- s1d.boxplot(c(w1, w2, w3), f2) 911s > g5 <- s1d.boxplot(c(w1, w2, w3), f2, p1d.rug.draw = FALSE) 912s > 912s > mat <- matrix(0, ncol = 1, nrow = 8) 912s > mat[c(2), ] <- 1 912s > mat[c(3:8), ] <- 2 912s > mat[1, ] <- 3 912s > g6 <- ADEgS(c(g3, g4, s1d.label(c(w1, w2, w3), p1d = list(rug = list(tck = 0.8), rev = TRUE), ppoints.cex = 0, plabels.cex = 0, plot = F, pgrid.draw = F)), 912s + layout = matrix((rev(mat)), ncol = 1)) 912s > g7 <- s1d.boxplot(c(w1, w2, w3), data.frame(f1, f2)) 912s > 912s > ## ex3 912s > data(banque, package = "ade4") 912s > banque.acm <- ade4::dudi.acm(banque, scan = FALSE, nf = 4) 912s > s1d.boxplot(banque.acm$l1[, 1], banque[, 1:7], plabels.cex = 1.8) 912s > 912s > 912s 912s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 912s Copyright (C) 2025 The R Foundation for Statistical Computing 912s Platform: arm-unknown-linux-gnueabihf (32-bit) 912s 912s R is free software and comes with ABSOLUTELY NO WARRANTY. 912s You are welcome to redistribute it under certain conditions. 912s Type 'license()' or 'licence()' for distribution details. 912s 912s R is a collaborative project with many contributors. 912s Type 'contributors()' for more information and 912s 'citation()' on how to cite R or R packages in publications. 912s 912s Type 'demo()' for some demos, 'help()' for on-line help, or 912s 'help.start()' for an HTML browser interface to help. 912s Type 'q()' to quit R. 912s 913s > library(adegraphics) 913s Registered S3 methods overwritten by 'adegraphics': 913s method from 913s biplot.dudi ade4 913s kplot.foucart ade4 913s kplot.mcoa ade4 913s kplot.mfa ade4 913s kplot.pta ade4 913s kplot.sepan ade4 913s kplot.statis ade4 913s scatter.coa ade4 913s scatter.dudi ade4 913s scatter.nipals ade4 913s scatter.pco ade4 913s score.acm ade4 913s score.mix ade4 913s score.pca ade4 913s screeplot.dudi ade4 913s > pdf("s1d.class.pdf") 913s > data(meau, package = "ade4") 913s > 913s > ## ex1 913s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 913s > g1 <- s1d.class(envpca$li[, 1], poslab = "value", meau$design$season, col = 1:6) 913s > update(g1, p1d.horizontal = FALSE) 913s > update(g1, p1d.reverse = TRUE) 913s > g2 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.reverse = TRUE) 914s > g3 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.hori = F) 914s > 914s > ## ex2 914s > set.seed(0) 914s > score1 <- c(rnorm(3, mean = 0, sd = 0.5), rnorm(3, mean = 1, sd = 0.5), rnorm(5, mean = 2, sd = 0.5)) 914s > factor1 <- factor(rep(LETTERS[1:3], times = c(3, 3, 5))) 914s > g41 <- s1d.class(score1, factor1) 914s > g42 <- s1d.class(score1, factor1, col = 1:3) 914s > g43 <- s1d.class(score1, factor1, col = TRUE) 914s > g44 <- s1d.class(score1, factor1, col = FALSE) 914s > g45 <- s1d.class(score1, factor1, plines.col = "grey") 914s > g46 <- s1d.class(score1, factor1, plines.col = "grey", col = TRUE) 914s > 914s > ## ex3 914s > score2 <- c(rnorm(10, mean = 0, sd = 0.5), rnorm(15, mean = -1, sd = 0.2), rnorm(10, mean = 2, sd = 0.5)) 914s > factor2 <- factor(rep(c(1, 3, 2), times = c(10, 15, 10))) 914s > levels(factor2) <- c("mean0", "mean2", "mean-1") 914s > g5 <- s1d.class(score2, factor2, col = 1:3) 914s > update(g5, posla = "value") 914s > 914s > indx <- rank(rnorm(35)) 914s > factor2 <- factor2[rank(indx)] 914s > s1d.class(score2[indx], factor2[indx], col = 1:3, posla = "regular") 914s > 914s > 914s 914s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 914s Copyright (C) 2025 The R Foundation for Statistical Computing 914s Platform: arm-unknown-linux-gnueabihf (32-bit) 914s 914s R is free software and comes with ABSOLUTELY NO WARRANTY. 914s You are welcome to redistribute it under certain conditions. 914s Type 'license()' or 'licence()' for distribution details. 914s 914s R is a collaborative project with many contributors. 914s Type 'contributors()' for more information and 914s 'citation()' on how to cite R or R packages in publications. 914s 914s Type 'demo()' for some demos, 'help()' for on-line help, or 914s 'help.start()' for an HTML browser interface to help. 914s Type 'q()' to quit R. 914s 914s > library(adegraphics) 914s Registered S3 methods overwritten by 'adegraphics': 914s method from 914s biplot.dudi ade4 914s kplot.foucart ade4 914s kplot.mcoa ade4 914s kplot.mfa ade4 914s kplot.pta ade4 914s kplot.sepan ade4 914s kplot.statis ade4 914s scatter.coa ade4 914s scatter.dudi ade4 914s scatter.nipals ade4 914s scatter.pco ade4 914s score.acm ade4 914s score.mix ade4 914s score.pca ade4 914s screeplot.dudi ade4 915s > pdf("s1d.density.pdf") 915s > 915s > set.seed(40) 915s > x1 <- rnorm(1000) 915s > g11 <- s1d.density(x1) 915s > g12 <- s1d.density(x1, col = FALSE, ppoly.col = "blue", p1d.rev = TRUE) 915s > g13 <- s1d.density(x1, col = TRUE, ppoly.col = "blue", p1d.hori = FALSE) 915s > g14 <- s1d.density(x1, col = TRUE, p1d.hori = FALSE, p1d.rev = TRUE) 915s > 915s > update(g11, ppolygons.border = "red") 915s > update(g11, col = FALSE, ppolygons.col = "black") 915s > update(g11, ppolygons.lwd = 3, ppolygons.lty = 3, ppolygons.alpha = 1) 915s > update(g11, ylim = c(-0.04, 0.5)) 915s > 915s > set.seed(50) 915s > x2 <- c(rnorm(1000, mean = -0.5, sd = 0.5), rnorm(1000, mean = 1)) 915s > fact <- rep(c("A", "B"), each = 1000) 915s > g21 <- s1d.density(x2, fact, col = c("red", "blue")) 915s > g22 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3) 915s > g23 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.rev = TRUE) 915s > g24 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE) 915s > g25 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE, p1d.rev = TRUE) 915s > 915s > set.seed(60) 915s > x3 <- rnorm(1000) 915s > g31 <- s1d.density(x3) 915s > g32 <- s1d.density(x3, p1d.rug.draw = FALSE) 915s > g33 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.rev = TRUE) 916s > g34 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE) 916s > g35 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE, p1d.rev = TRUE) 916s > 916s > update(g31, p1d.rev = TRUE) 916s > update(g32, p1d.rev = TRUE) 916s > update(g33, p1d.rev = FALSE) 916s > update(g34, p1d.rev = TRUE) 916s > update(g35, p1d.rev = FALSE) 916s > 916s > 916s 916s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 916s Copyright (C) 2025 The R Foundation for Statistical Computing 916s Platform: arm-unknown-linux-gnueabihf (32-bit) 916s 916s R is free software and comes with ABSOLUTELY NO WARRANTY. 916s You are welcome to redistribute it under certain conditions. 916s Type 'license()' or 'licence()' for distribution details. 916s 916s R is a collaborative project with many contributors. 916s Type 'contributors()' for more information and 916s 'citation()' on how to cite R or R packages in publications. 916s 916s Type 'demo()' for some demos, 'help()' for on-line help, or 916s 'help.start()' for an HTML browser interface to help. 916s Type 'q()' to quit R. 916s 916s > library(adegraphics) 916s Registered S3 methods overwritten by 'adegraphics': 916s method from 916s biplot.dudi ade4 916s kplot.foucart ade4 916s kplot.mcoa ade4 916s kplot.mfa ade4 916s kplot.pta ade4 916s kplot.sepan ade4 916s kplot.statis ade4 916s scatter.coa ade4 916s scatter.dudi ade4 916s scatter.nipals ade4 916s scatter.pco ade4 916s score.acm ade4 916s score.mix ade4 916s score.pca ade4 916s screeplot.dudi ade4 916s > pdf("s1d.distri.pdf") 917s > 917s > ## ex1 917s > score <- rnorm(10) 917s > df <- data.frame(matrix(rep(c(1, 2), 10), ncol = 2)) 917s > g1 <- s1d.distri(score, df) 917s > 917s > ## ex2 917s > set.seed(1) 917s > w <- seq(-1, 1, le = 200) 917s > distri <- data.frame(lapply(1:50, function(x) sample(200:1) * ((w >= (- x / 50)) & (w <= x / 50)))) 917s > names(distri) <- paste("w", 1:50, sep = "") 917s > g2 <- s1d.distri(w, distri) 917s > g3 <- s1d.distri(w, distri, yrank = TRUE, sdS = 1.5) 917s > 917s > g4 <- s1d.distri(w, distri, p1d.rug.draw = FALSE) 917s > g5 <- s1d.distri(w, distri, p1d.reverse = TRUE) 917s > g6 <- s1d.distri(w, distri, p1d.hori = FALSE) 917s > g7 <- s1d.distri(w, distri, p1d.hori = FALSE, p1d.reverse = TRUE) 917s > 917s > update(g2, p1d.rug.draw = FALSE) 917s > update(g5, p1d.rug.draw = FALSE) 917s > 918s 918s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 918s Copyright (C) 2025 The R Foundation for Statistical Computing 918s Platform: arm-unknown-linux-gnueabihf (32-bit) 918s 918s R is free software and comes with ABSOLUTELY NO WARRANTY. 918s You are welcome to redistribute it under certain conditions. 918s Type 'license()' or 'licence()' for distribution details. 918s 918s R is a collaborative project with many contributors. 918s Type 'contributors()' for more information and 918s 'citation()' on how to cite R or R packages in publications. 918s 918s Type 'demo()' for some demos, 'help()' for on-line help, or 918s 'help.start()' for an HTML browser interface to help. 918s Type 'q()' to quit R. 918s 918s > library(adegraphics) 918s Registered S3 methods overwritten by 'adegraphics': 918s method from 918s biplot.dudi ade4 918s kplot.foucart ade4 918s kplot.mcoa ade4 918s kplot.mfa ade4 918s kplot.pta ade4 918s kplot.sepan ade4 918s kplot.statis ade4 918s scatter.coa ade4 918s scatter.dudi ade4 918s scatter.nipals ade4 918s scatter.pco ade4 918s score.acm ade4 918s score.mix ade4 918s score.pca ade4 918s screeplot.dudi ade4 918s > pdf("s1d.gauss.pdf") 918s > 918s > data(meau, package= "ade4") 918s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 918s > dffac <- cbind.data.frame(meau$design$season, meau$design$site) 918s > g11 <- s1d.gauss(envpca$li[, 1], dffac[, 1]) 918s > g12 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.rev = TRUE) 919s > g13 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE) 919s > g14 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE, p1d.rev = TRUE) 919s > 919s > g2 <- s1d.gauss(envpca$li[, 1], dffac[, 1], ppoly.col = 1:4, fill = TRUE, plines.col = 1:4, col = FALSE) 919s > 919s > g31 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, ylim = c(0, 2), fill = TRUE, p1d.hori = FALSE) 919s > g32 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, fill = TRUE, p1d.hori = FALSE) 919s > 919s > g4 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:5) 919s > g5 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = FALSE, ppoly.col = 1:6) 919s > g6 <- s1d.gauss(envpca$li[, 1], fac = dffac[, 1], fill = TRUE, col = 1:6, ppoly.col = 1:6) 919s > 919s > g7 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:6, ppoly.col = 1:6, steps = 10) 919s > g8 <- s1d.gauss(envpca$li[, 1], dffac[, 2]) 919s > 919s > update(g11, p1d.reverse = TRUE) 919s > update(g12, p1d.reverse = FALSE) 919s > update(g13, p1d.reverse = TRUE) 919s > update(g14, p1d.reverse = FALSE) 920s > 920s 920s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 920s Copyright (C) 2025 The R Foundation for Statistical Computing 920s Platform: arm-unknown-linux-gnueabihf (32-bit) 920s 920s R is free software and comes with ABSOLUTELY NO WARRANTY. 920s You are welcome to redistribute it under certain conditions. 920s Type 'license()' or 'licence()' for distribution details. 920s 920s R is a collaborative project with many contributors. 920s Type 'contributors()' for more information and 920s 'citation()' on how to cite R or R packages in publications. 920s 920s Type 'demo()' for some demos, 'help()' for on-line help, or 920s 'help.start()' for an HTML browser interface to help. 920s Type 'q()' to quit R. 920s 920s > library(ade4) 920s > library(adegraphics) 920s Registered S3 methods overwritten by 'adegraphics': 920s method from 920s biplot.dudi ade4 920s kplot.foucart ade4 920s kplot.mcoa ade4 920s kplot.mfa ade4 920s kplot.pta ade4 920s kplot.sepan ade4 920s kplot.statis ade4 920s scatter.coa ade4 920s scatter.dudi ade4 920s scatter.nipals ade4 920s scatter.pco ade4 920s score.acm ade4 920s score.mix ade4 920s score.pca ade4 920s screeplot.dudi ade4 920s > pdf("s1d.hist.pdf") 920s 920s Attaching package: 'adegraphics' 920s 920s The following objects are masked from 'package:ade4': 920s 920s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 920s s.label, s.logo, s.match, s.traject, s.value, table.value, 920s triangle.class 920s 920s > 920s > set.seed(40) 920s > x1 <- rnorm(1000) 920s > g11 <- s1d.hist(x1) 920s > g12 <- s1d.hist(x1, col = 1:10) 920s > g13 <- s1d.hist(x1, col = FALSE, ppoly.col = 1:10) 920s > g14 <- s1d.hist(x1, col = TRUE, ppoly.col = "blue") 921s > 921s > set.seed(50) 921s > x1 <- rnorm(1000) 921s > g21 <- s1d.hist(x1) # p1d.hori = TRUE and p1d.reverse = FALSE by default 921s > # g22 <- s1d.hist(x1, p1d.hori = TRUE, p1d.rev = TRUE) 921s > g23 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = FALSE) 921s > # g24 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = TRUE) 921s > 921s > 921s > # randtest.pcaiv 921s > data(rpjdl, package = "ade4") 921s > millog <- log(rpjdl$mil + 1) 921s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 921s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 921s > set.seed(50) 921s > rd11 <- randtest(caiv1) 921s > plot(rd11) 921s > set.seed(50) 921s > rd12 <- randtest(caiv1, output = "full") 921s > plot(rd12, nclass = 15) # must be the same output as rd11 921s > set.seed(50) 921s > rd13 <- randtest(caiv1, output = "full") 921s > plot(rd13, nclass = 8) 921s > plot(rd13, nclass = 8, plines.col = "red") 921s > plot(rd13, nclass = 8, obs.plines.col = "red") 922s > plot(rd13, nclass = 8, sim.plines.col = "red") 922s > 922s > # randtest.dpcoa 922s > data(humDNAm, package = "ade4") 922s > dpcoahum <- dpcoa(data.frame(t(humDNAm$samples)), sqrt(humDNAm$distances), scan = FALSE, nf = 2) 922s > set.seed(50) 922s > rd21 <- randtest(dpcoahum) 922s > plot(rd21) 922s > rd22 <- randtest(dpcoahum, output = "full") 922s > plot(rd22) 923s > 923s > # randtest.amova (plot.krandtest) 923s > amovahum <- amova(humDNAm$samples, sqrt(humDNAm$distances), humDNAm$structures) 923s > set.seed(50) 923s > rd31 <- randtest(amovahum, 49) 923s > plot(rd31) 923s > plot(rd31, plines.col = "red") 923s > plot(rd31, g1.plines.col = "red") 924s > set.seed(50) 924s > rd32 <- randtest(amovahum, 49, output = "full") 924s > plot(rd32) 924s > plot(rd32, plines.col = "red") 924s > plot(rd32, g1.plines.col = "red") 924s > plot(rd32, nclass = 30, g2.pback.col = "lightblue") 925s > 925s > # randtest.coinertia 925s > data(doubs, package = "ade4") 925s > dudi1 <- dudi.pca(doubs$env, scale = TRUE, scan = FALSE, nf = 3) 925s > dudi2 <- dudi.pca(doubs$fish, scale = FALSE, scan = FALSE, nf = 2) 925s > coin1 <- coinertia(dudi1,dudi2, scan = FALSE, nf = 2) 925s > set.seed(50) 925s > rd4 <- randtest(coin1) 925s > plot(rd4) 925s > 925s > # randtest.pcaivortho 925s > data(rpjdl, package = "ade4") 925s > millog <- log(rpjdl$mil + 1) 925s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 925s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 925s > set.seed(50) 925s > rd5 <- randtest(caiv1) 925s > plot(rd5) 925s > 925s > # randtest.rlq (plot.krandtest) 925s > data(aviurba, package = "ade4") 925s > coa1 <- dudi.coa(aviurba$fau, scannf = FALSE, nf = 2) 925s > dudimil <- dudi.hillsmith(aviurba$mil, scannf = FALSE, nf = 2, row.w = coa1$lw) 925s > duditrait <- dudi.hillsmith(aviurba$traits, scannf = FALSE, nf = 2, row.w = coa1$cw) 925s > rlq1 <- rlq(dudimil, coa1, duditrait, scannf = FALSE, nf = 2) 925s > set.seed(50) 925s > rd6 <- randtest(rlq1) 926s > plot(rd6) 926s > 926s > # randtest.between 926s > data(meaudret, package = "ade4") 926s > pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3) 926s > set.seed(50) 926s > rd7 <- randtest(bca(pca1, meaudret$design$season, scan = FALSE), 99) 926s > plot(rd7, main = "Monte-Carlo test") 926s > 926s > # randtest.discrimin 926s > set.seed(50) 926s > rd8 <- randtest(discrimin(pca1, meaudret$design$season, scan = FALSE), 99) 926s > plot(rd8, main = "Monte-Carlo test") 926s > 926s 926s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 926s Copyright (C) 2025 The R Foundation for Statistical Computing 926s Platform: arm-unknown-linux-gnueabihf (32-bit) 926s 926s R is free software and comes with ABSOLUTELY NO WARRANTY. 926s You are welcome to redistribute it under certain conditions. 926s Type 'license()' or 'licence()' for distribution details. 926s 926s R is a collaborative project with many contributors. 926s Type 'contributors()' for more information and 926s 'citation()' on how to cite R or R packages in publications. 926s 926s Type 'demo()' for some demos, 'help()' for on-line help, or 926s 'help.start()' for an HTML browser interface to help. 926s Type 'q()' to quit R. 926s 926s > library(adegraphics) 927s Registered S3 methods overwritten by 'adegraphics': 927s method from 927s biplot.dudi ade4 927s kplot.foucart ade4 927s kplot.mcoa ade4 927s kplot.mfa ade4 927s kplot.pta ade4 927s kplot.sepan ade4 927s kplot.statis ade4 927s scatter.coa ade4 927s scatter.dudi ade4 927s scatter.nipals ade4 927s scatter.pco ade4 927s score.acm ade4 927s score.mix ade4 927s score.pca ade4 927s screeplot.dudi ade4 927s > pdf("s1d.label.pdf") 927s > data(meau, package= "ade4") 927s > 927s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 927s > 927s > g1 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1)) 927s > g2 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), p1d.hori = F) 927s > g3 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), plabels.boxes.draw = FALSE, plab.srt = 45, plabel.boxes = list(draw = FALSE)) 927s > g4 <- s1d.label(envpca$co[, 1], row.names(envpca$co), p1d.reverse = TRUE, poslabel = "value") 927s > g5 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), at = 0, plabel.cex = 0) 927s > 927s 927s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 927s Copyright (C) 2025 The R Foundation for Statistical Computing 927s Platform: arm-unknown-linux-gnueabihf (32-bit) 927s 927s R is free software and comes with ABSOLUTELY NO WARRANTY. 927s You are welcome to redistribute it under certain conditions. 927s Type 'license()' or 'licence()' for distribution details. 927s 927s R is a collaborative project with many contributors. 927s Type 'contributors()' for more information and 927s 'citation()' on how to cite R or R packages in publications. 927s 927s Type 'demo()' for some demos, 'help()' for on-line help, or 927s 'help.start()' for an HTML browser interface to help. 927s Type 'q()' to quit R. 927s 927s > library(adegraphics) 928s Registered S3 methods overwritten by 'adegraphics': 928s method from 928s biplot.dudi ade4 928s kplot.foucart ade4 928s kplot.mcoa ade4 928s kplot.mfa ade4 928s kplot.pta ade4 928s kplot.sepan ade4 928s kplot.statis ade4 928s scatter.coa ade4 928s scatter.dudi ade4 928s scatter.nipals ade4 928s scatter.pco ade4 928s score.acm ade4 928s score.mix ade4 928s score.pca ade4 928s screeplot.dudi ade4 928s > pdf("s1d.match.pdf") 928s > 928s > g1 <- s1d.match(-5:5, 2 * (-5:5)) 928s > g2 <- s1d.match(rnorm(10), runif(10), p1d.hor = FALSE) 928s > g3 <- s1d.match(1:5, 7:11, p1d.hor = F, p1d.rev = T) 928s > 928s 928s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 928s Copyright (C) 2025 The R Foundation for Statistical Computing 928s Platform: arm-unknown-linux-gnueabihf (32-bit) 928s 928s R is free software and comes with ABSOLUTELY NO WARRANTY. 928s You are welcome to redistribute it under certain conditions. 928s Type 'license()' or 'licence()' for distribution details. 928s 928s R is a collaborative project with many contributors. 928s Type 'contributors()' for more information and 928s 'citation()' on how to cite R or R packages in publications. 928s 928s Type 'demo()' for some demos, 'help()' for on-line help, or 928s 'help.start()' for an HTML browser interface to help. 928s Type 'q()' to quit R. 928s 929s > library(adegraphics) 929s Registered S3 methods overwritten by 'adegraphics': 929s method from 929s biplot.dudi ade4 929s kplot.foucart ade4 929s kplot.mcoa ade4 929s kplot.mfa ade4 929s kplot.pta ade4 929s kplot.sepan ade4 929s kplot.statis ade4 929s scatter.coa ade4 929s scatter.dudi ade4 929s scatter.nipals ade4 929s scatter.pco ade4 929s score.acm ade4 929s score.mix ade4 929s score.pca ade4 929s screeplot.dudi ade4 929s > pdf("table.image.pdf") 929s > 929s > ## ex1 929s > x <- 1:4 929s > y <- 1:4 929s > df <- data.frame(as.matrix(cbind(x, y))) 929s > g1 <- table.image(df, col = 2:4) 929s > update(g1, plegend.drawColorKey = TRUE) 929s > 929s > ## ex2 929s > df <- matrix(0, 10, 10) 929s > df[1:3, 1:3] <- 5 929s > g2 <- table.image(df) 929s > g3 <- table.image(df, breaks = c(5, 2, 0)) 929s > 929s > ## ex3 929s > data(rpjdl, package = "ade4") 929s > X <- data.frame(t(rpjdl$fau)) 929s > Y <- data.frame(t(rpjdl$mil)) 929s > coa1 <- ade4::dudi.coa(X, scan = FALSE) 930s > x <- rank(coa1$co[, 1]) 930s > y <- rank(coa1$li[, 1]) 930s > g4 <- table.image(Y, coordsx = x, coordsy = 1:8, axis.text = list(alpha = 0), pgrid.col = "black", pgrid.lwd = 0.8, col = c("white", "black"), plegend.drawKey = FALSE) 930s > g5 <- table.image(X, coordsx = x, coordsy = y, ptable = list(x = list(tck = 0), y = list(tck = 4)), pleg.drawKey = FALSE, labelsy = paste(" ", row.names(X), sep = "")) 930s > g6 <- ADEgS(list(g4, g5), positions = rbind(c(0, 0, 1, 0.3), c(0, 0.4, 1, 1))) 930s > 930s 930s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 930s Copyright (C) 2025 The R Foundation for Statistical Computing 930s Platform: arm-unknown-linux-gnueabihf (32-bit) 930s 930s R is free software and comes with ABSOLUTELY NO WARRANTY. 930s You are welcome to redistribute it under certain conditions. 930s Type 'license()' or 'licence()' for distribution details. 930s 930s R is a collaborative project with many contributors. 930s Type 'contributors()' for more information and 930s 'citation()' on how to cite R or R packages in publications. 930s 930s Type 'demo()' for some demos, 'help()' for on-line help, or 930s 'help.start()' for an HTML browser interface to help. 930s Type 'q()' to quit R. 930s 930s > library(adegraphics) 930s Registered S3 methods overwritten by 'adegraphics': 930s method from 930s biplot.dudi ade4 930s kplot.foucart ade4 930s kplot.mcoa ade4 930s kplot.mfa ade4 930s kplot.pta ade4 930s kplot.sepan ade4 930s kplot.statis ade4 930s scatter.coa ade4 930s scatter.dudi ade4 930s scatter.nipals ade4 930s scatter.pco ade4 930s score.acm ade4 930s score.mix ade4 930s score.pca ade4 930s screeplot.dudi ade4 930s > pdf("table.value.pdf") 930s > 930s > 930s > ## ex1 930s > data(olympic, package = "ade4") 931s > tab1 <- data.frame(scale(olympic$tab)) 931s > pca <- ade4::dudi.pca(tab1, scann = FALSE) 931s > g1 <- table.value(tab1, axis.line = list(col = "blue"), axis.text = list(col = "grey")) 931s > g2 <- table.value(tab1, coordsx = c(1:5, 10:6)) 931s > g3 <- table.value(tab1, coordsx = c(1:5, 10:8)) 931s > g4 <- table.value(tab1, coordsy = rank(pca$li[, 1]), coordsx = rank(pca$co[, 1]), method = "color") 931s > g5 <- table.value(tab1, coordsy = pca$li[, 1], coordsx = pca$co[, 1], ptable = list(x = list(srt = 90))) 931s > 931s > ## ex2 931s > data(eurodist) 931s > g61 <- table.value(eurodist) 931s > g62 <- table.value(eurodist, store = TRUE, symbol = "circle") 931s > g63 <- table.value(eurodist, store = FALSE, psub.text = "eurodist", psub.position = c(0, -0.04)) 931s > g64 <- table.value(eurodist, ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 931s > g65 <- table.value(eurodist, ptable.x = list(pos = "bottom"), 931s + ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 931s > 931s > ## ex3 931s > data("doubs", package = "ade4") 931s > tab2 <- as.table(as.matrix(doubs$fish)) 931s > g8 <- table.value(tab2) 931s > 931s > ## ex4 931s > data(chats, package = "ade4") 931s > tab3 <- as.table(as.matrix(data.frame(t(chats)))) 931s > coa1 <- ade4::dudi.coa(data.frame(t(chats)), scann = FALSE) 931s > adegparold <- adegpar() 931s > adegpar(ptable = list(x = list(pos = "bottom", srt = 0), y = list(pos = "left")), plegend.drawKey = FALSE) 931s > g9 <- table.value(tab3, meanX = TRUE, ablineX = TRUE) 931s > g10 <- table.value(tab3, meanY = TRUE, ablineY = TRUE) 931s > g11 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanX = TRUE, ablineX = TRUE) 931s > g12 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanY = TRUE, ablineY = TRUE) 931s > g13 <- ADEgS(list(g9, g10, g11, g12), pos = rbind(c(0, 0.5, 0.5, 1), c(0.5, 0.5, 1, 1), c(0, 0, 0.5, 0.5), c(0.5, 0, 1, 0.5))) 932s > adegpar(adegparold) 932s > 932s > ## ex5 932s > data(rpjdl, package = "ade4") 932s > tab4 <- data.frame(t(rpjdl$fau)) 932s > coa2 <- ade4::dudi.coa(tab4, scann = FALSE) 932s > g14 <- table.value(tab4, coordsx = coa2$c1[, 1], coordsy = rank(coa2$l1[, 1]), axis.text = list(cex = 0), labelsy = rpjdl$lalab, plot = F) 932s > 932s > ## ex6 932s > tab5 <- as.table(matrix(rep(0, 100), 10)) 932s > tab5[1:5, 1:5] <- 10 932s > ade4::table.cont(tab5, abmean.x = T, y = 10:1) 932s > g15 <- table.value(tab5, coordsy = 10:1, meanX = T) 932s > g16 <- table.value(tab5, coordsy = 10:1, meanX = T, meanY = TRUE, ablineX = TRUE, ablineY = TRUE) 932s > 932s > ## ex7 932s > tab6 <- matrix(rep(0, 100), 10) 932s > tab6[1:5, 1:5] <- 20 932s > colnames(tab6) <- LETTERS[1:10] 932s > rownames(tab6) <- LETTERS[1:10] 932s > ade4::table.value(tab6, x = 1:10, y = 10:1) 932s > g17 <- table.value(tab6, coordsx = 1:10, coordsy = 10:1) 932s > g18 <- table.value(tab6, coordsx = 1:10, coordsy = c(1, 2, 5, 6, 8, 9, 10, 3, 4, 7)) 932s > 932s > 932s > ## ex8 932s > d <- as.dist(matrix(rep(1:5, 5), 5), upper = TRUE) 932s > attr(d, "Labels") <- c ("A", "B", "C", "D", "E") 932s > g4 <- table.value(d) 932s > 932s > ## ex9 932s > data(irishdata, package = "ade4") 932s > d.geo <- dist(irishdata$xy.utm) 932s > g5 <- table.value(d.geo) 932s > 932s 932s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 932s Copyright (C) 2025 The R Foundation for Statistical Computing 932s Platform: arm-unknown-linux-gnueabihf (32-bit) 932s 932s R is free software and comes with ABSOLUTELY NO WARRANTY. 932s You are welcome to redistribute it under certain conditions. 932s Type 'license()' or 'licence()' for distribution details. 932s 932s R is a collaborative project with many contributors. 932s Type 'contributors()' for more information and 932s 'citation()' on how to cite R or R packages in publications. 932s 932s Type 'demo()' for some demos, 'help()' for on-line help, or 932s 'help.start()' for an HTML browser interface to help. 932s Type 'q()' to quit R. 932s 932s > library(adegraphics) 933s Registered S3 methods overwritten by 'adegraphics': 933s method from 933s biplot.dudi ade4 933s kplot.foucart ade4 933s kplot.mcoa ade4 933s kplot.mfa ade4 933s kplot.pta ade4 933s kplot.sepan ade4 933s kplot.statis ade4 933s scatter.coa ade4 933s scatter.dudi ade4 933s scatter.nipals ade4 933s scatter.pco ade4 933s score.acm ade4 933s score.mix ade4 933s score.pca ade4 933s screeplot.dudi ade4 933s > pdf("triangle.pdf") 933s > 933s > ## ex1 933s > data(euro123, package = "ade4") 933s > 933s > dfxyz1 <- rbind.data.frame(euro123$in78, euro123$in86, euro123$in97) 933s > row.names(dfxyz1) <- paste(row.names(euro123$in78), rep(c(1, 2, 3), rep(12, 3)), sep = "") 933s > g1 <- triangle.label(dfxyz1, label = row.names(dfxyz1)) 933s > g2 <- triangle.label(euro123$in86, label = row.names(euro123$in78), plab.cex = 0.8) 933s > g3 <- triangle.match(euro123$in78, euro123$in86) 933s > g4 <- triangle.label(rbind.data.frame(euro123$in78, euro123$in86), plab.cex = 1, addaxes = TRUE, psub = list(text = "Principal axis", cex = 2, pos = "topright")) 933s > g5 <- triangle.label(euro123[[1]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), plabels.cex = 1, label = row.names(euro123[[1]]), addax = TRUE) 934s > g6 <- triangle.label(euro123[[2]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 934s > g7 <- triangle.label(euro123[[3]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 934s > g8 <- triangle.label(rbind.data.frame(euro123[[1]], euro123[[2]], euro123[[3]])) 934s > 934s > ## ex2 934s > dfxyz2 <- cbind.data.frame(a = runif(100), b = runif(100), c = runif(100, 4, 5)) 934s > g9 <- triangle.label(dfxyz2) 934s > 934s > ## ex3 934s > g10 <- triangle.label(dfxyz1) 934s > g11 <- triangle.class(dfxyz1, as.factor(rep("G", 36)), star = 0.5, ellips = 1) 934s > g12 <- triangle.class(dfxyz1, euro123$plan$an) 934s > g13 <- triangle.class(dfxyz1, euro123$plan$pays) 934s > g14 <- triangle.class(dfxyz1, euro123$plan$an, elli = 1, pell.axe.draw = TRUE) 935s > g15 <- triangle.class(dfxyz1, euro123$plan$an, elli = 0, sta = 0, col = c("red", "green", "blue"), pell.axe.draw = TRUE, plab.cex = 2, ppoi.cex = 2, pell.axe.draw = TRUE) 935s > g16 <- triangle.class(dfxyz1, euro123$plan$an, ell = 2, sta = 0.5, pell.axe.draw = TRUE, plab.cex = 1.5) 935s > g17 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, adjust = FALSE) 935s > g18 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, chull =c(0.2, 0.25, 0.5, 0.75, 1), adjust = TRUE, showposi = TRUE, col = 10:13, pgrid.draw = FALSE) 935s > 935s autopkgtest [23:08:10]: test run-unit-test: -----------------------] 939s autopkgtest [23:08:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 939s run-unit-test PASS 943s autopkgtest [23:08:18]: test pkg-r-autopkgtest: preparing testbed 945s Reading package lists... 945s Building dependency tree... 945s Reading state information... 945s Solving dependencies... 946s The following NEW packages will be installed: 946s build-essential cpp cpp-15 cpp-15-arm-linux-gnueabihf 946s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-15 g++-15-arm-linux-gnueabihf 946s g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf 946s gcc-arm-linux-gnueabihf gfortran gfortran-15 gfortran-15-arm-linux-gnueabihf 946s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 946s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-15-dev 946s libgfortran-15-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 946s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 946s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 946s libreadline-dev libstdc++-15-dev libtirpc-dev libubsan1 libzstd-dev 946s linux-libc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto 946s zlib1g-dev 946s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 946s Need to get 83.1 MB of archives. 946s After this operation, 253 MB of additional disk space will be used. 946s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-2ubuntu4 [21.8 kB] 946s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.19.0-3.3 [1804 kB] 950s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 951s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1build1 [62.6 kB] 951s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-2ubuntu4 [1416 kB] 953s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1build1 [553 kB] 954s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 954s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [10.1 MB] 971s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-12ubuntu1 [1032 B] 971s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 971s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 971s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-12ubuntu1 [43.5 kB] 971s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-12ubuntu1 [2949 kB] 975s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-12ubuntu1 [1187 kB] 976s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-12ubuntu1 [898 kB] 978s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [19.5 MB] 1006s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-12ubuntu1 [499 kB] 1007s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 1007s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 1007s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-12ubuntu1 [2638 kB] 1012s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 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[252 kB] 1072s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libreadline-dev armhf 8.3-3 [165 kB] 1073s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libzstd-dev armhf 1.5.7+dfsg-3 [342 kB] 1073s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf liblzma-dev armhf 5.8.2-2 [167 kB] 1073s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf pkgconf-bin armhf 1.8.1-4build1 [21.4 kB] 1073s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf pkgconf armhf 1.8.1-4build1 [16.8 kB] 1073s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libtirpc-dev armhf 1.3.6+ds-1 [184 kB] 1074s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-dev all 4.5.2-1ubuntu2 [1880 B] 1074s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf pkg-r-autopkgtest all 20250812 [6158 B] 1074s Fetched 83.1 MB in 2min 8s (650 kB/s) 1074s Selecting previously unselected package libc-dev-bin. 1074s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 94443 files and directories currently installed.) 1074s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_armhf.deb ... 1074s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 1074s Selecting previously unselected package linux-libc-dev:armhf. 1074s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_armhf.deb ... 1074s Unpacking linux-libc-dev:armhf (6.19.0-3.3) ... 1075s Selecting previously unselected package libcrypt-dev:armhf. 1075s Preparing to 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1076s Selecting previously unselected package libubsan1:armhf. 1076s Preparing to unpack .../13-libubsan1_15.2.0-12ubuntu1_armhf.deb ... 1076s Unpacking libubsan1:armhf (15.2.0-12ubuntu1) ... 1076s Selecting previously unselected package libgcc-15-dev:armhf. 1076s Preparing to unpack .../14-libgcc-15-dev_15.2.0-12ubuntu1_armhf.deb ... 1076s Unpacking libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 1076s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 1076s Preparing to unpack .../15-gcc-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 1076s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1076s Selecting previously unselected package gcc-15. 1076s Preparing to unpack .../16-gcc-15_15.2.0-12ubuntu1_armhf.deb ... 1076s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 1076s Selecting previously unselected package gcc-arm-linux-gnueabihf. 1077s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 1077s Unpacking gcc-arm-linux-gnueabihf 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g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1077s Selecting previously unselected package g++. 1077s Preparing to unpack .../23-g++_4%3a15.2.0-4ubuntu1_armhf.deb ... 1077s Unpacking g++ (4:15.2.0-4ubuntu1) ... 1077s Selecting previously unselected package build-essential. 1077s Preparing to unpack .../24-build-essential_12.12ubuntu2_armhf.deb ... 1077s Unpacking build-essential (12.12ubuntu2) ... 1077s Selecting previously unselected package dctrl-tools. 1077s Preparing to unpack .../25-dctrl-tools_2.24-3build4_armhf.deb ... 1077s Unpacking dctrl-tools (2.24-3build4) ... 1078s Selecting previously unselected package libgfortran-15-dev:armhf. 1078s Preparing to unpack .../26-libgfortran-15-dev_15.2.0-12ubuntu1_armhf.deb ... 1078s Unpacking libgfortran-15-dev:armhf (15.2.0-12ubuntu1) ... 1078s Selecting previously unselected package gfortran-15-arm-linux-gnueabihf. 1078s Preparing to unpack .../27-gfortran-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 1078s Unpacking gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1078s Selecting previously unselected package gfortran-15. 1078s Preparing to unpack .../28-gfortran-15_15.2.0-12ubuntu1_armhf.deb ... 1078s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 1078s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 1078s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 1078s Unpacking gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1078s Selecting previously unselected package gfortran. 1078s Preparing to unpack .../30-gfortran_4%3a15.2.0-4ubuntu1_armhf.deb ... 1078s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 1078s Selecting previously unselected package icu-devtools. 1078s Preparing to unpack .../31-icu-devtools_78.2-1ubuntu1_armhf.deb ... 1078s Unpacking icu-devtools (78.2-1ubuntu1) ... 1078s Selecting previously unselected package libblas-dev:armhf. 1078s Preparing to unpack .../32-libblas-dev_3.12.1-7ubuntu1_armhf.deb ... 1078s Unpacking libblas-dev:armhf (3.12.1-7ubuntu1) ... 1078s Selecting previously unselected package libbz2-dev:armhf. 1078s Preparing to unpack .../33-libbz2-dev_1.0.8-6build2_armhf.deb ... 1078s Unpacking libbz2-dev:armhf (1.0.8-6build2) ... 1078s Selecting previously unselected package libdeflate-dev:armhf. 1078s Preparing to unpack .../34-libdeflate-dev_1.23-2build1_armhf.deb ... 1078s Unpacking libdeflate-dev:armhf (1.23-2build1) ... 1078s Selecting previously unselected package libicu-dev:armhf. 1078s Preparing to unpack .../35-libicu-dev_78.2-1ubuntu1_armhf.deb ... 1078s Unpacking libicu-dev:armhf (78.2-1ubuntu1) ... 1079s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 1079s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-4ubuntu3_armhf.deb ... 1079s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 1079s Selecting previously unselected package libjpeg8-dev:armhf. 1079s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 1079s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 1079s Selecting previously unselected package libjpeg-dev:armhf. 1079s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 1079s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 1079s Selecting previously unselected package liblapack-dev:armhf. 1079s Preparing to unpack .../39-liblapack-dev_3.12.1-7ubuntu1_armhf.deb ... 1079s Unpacking liblapack-dev:armhf (3.12.1-7ubuntu1) ... 1079s Selecting previously unselected package libncurses-dev:armhf. 1079s Preparing to unpack .../40-libncurses-dev_6.6+20251231-1_armhf.deb ... 1079s Unpacking libncurses-dev:armhf (6.6+20251231-1) ... 1079s Selecting previously unselected package libpcre2-16-0:armhf. 1079s Preparing to unpack .../41-libpcre2-16-0_10.46-1_armhf.deb ... 1079s Unpacking libpcre2-16-0:armhf (10.46-1) ... 1079s Selecting previously unselected package libpcre2-32-0:armhf. 1079s Preparing to unpack .../42-libpcre2-32-0_10.46-1_armhf.deb ... 1079s Unpacking libpcre2-32-0:armhf (10.46-1) ... 1079s Selecting previously unselected package libpcre2-posix3:armhf. 1079s Preparing to unpack .../43-libpcre2-posix3_10.46-1_armhf.deb ... 1079s Unpacking libpcre2-posix3:armhf (10.46-1) ... 1079s Selecting previously unselected package libpcre2-dev:armhf. 1079s Preparing to unpack .../44-libpcre2-dev_10.46-1_armhf.deb ... 1079s Unpacking libpcre2-dev:armhf (10.46-1) ... 1079s Selecting previously unselected package libpkgconf3:armhf. 1079s Preparing to unpack .../45-libpkgconf3_1.8.1-4build1_armhf.deb ... 1079s Unpacking libpkgconf3:armhf (1.8.1-4build1) ... 1079s Selecting previously unselected package zlib1g-dev:armhf. 1079s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 1079s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1079s Selecting previously unselected package libpng-dev:armhf. 1079s Preparing to unpack .../47-libpng-dev_1.6.54-1_armhf.deb ... 1079s Unpacking libpng-dev:armhf (1.6.54-1) ... 1079s Selecting previously unselected package libreadline-dev:armhf. 1079s Preparing to unpack .../48-libreadline-dev_8.3-3_armhf.deb ... 1079s Unpacking libreadline-dev:armhf (8.3-3) ... 1079s Selecting previously unselected package libzstd-dev:armhf. 1079s Preparing to unpack .../49-libzstd-dev_1.5.7+dfsg-3_armhf.deb ... 1079s Unpacking libzstd-dev:armhf (1.5.7+dfsg-3) ... 1079s Selecting previously unselected package liblzma-dev:armhf. 1079s Preparing to unpack .../50-liblzma-dev_5.8.2-2_armhf.deb ... 1079s Unpacking liblzma-dev:armhf (5.8.2-2) ... 1079s Selecting previously unselected package pkgconf-bin. 1079s Preparing to unpack .../51-pkgconf-bin_1.8.1-4build1_armhf.deb ... 1079s Unpacking pkgconf-bin (1.8.1-4build1) ... 1079s Selecting previously unselected package pkgconf:armhf. 1079s Preparing to unpack .../52-pkgconf_1.8.1-4build1_armhf.deb ... 1079s Unpacking pkgconf:armhf (1.8.1-4build1) ... 1079s Selecting previously unselected package libtirpc-dev:armhf. 1079s Preparing to unpack .../53-libtirpc-dev_1.3.6+ds-1_armhf.deb ... 1079s Unpacking libtirpc-dev:armhf (1.3.6+ds-1) ... 1079s Selecting previously unselected package r-base-dev. 1079s Preparing to unpack .../54-r-base-dev_4.5.2-1ubuntu2_all.deb ... 1079s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 1079s Selecting previously unselected package pkg-r-autopkgtest. 1080s Preparing to unpack .../55-pkg-r-autopkgtest_20250812_all.deb ... 1080s Unpacking pkg-r-autopkgtest (20250812) ... 1080s Setting up libzstd-dev:armhf (1.5.7+dfsg-3) ... 1080s Setting up linux-libc-dev:armhf (6.19.0-3.3) ... 1080s Setting up libpcre2-16-0:armhf (10.46-1) ... 1080s Setting up libpcre2-32-0:armhf (10.46-1) ... 1080s Setting up libtirpc-dev:armhf (1.3.6+ds-1) ... 1080s Setting up libpkgconf3:armhf (1.8.1-4build1) ... 1080s Setting up rpcsvc-proto (1.4.3-1build1) ... 1080s Setting up libmpc3:armhf (1.3.1-2) ... 1080s Setting up icu-devtools (78.2-1ubuntu1) ... 1080s Setting up pkgconf-bin (1.8.1-4build1) ... 1080s Setting up liblzma-dev:armhf (5.8.2-2) ... 1080s Setting up libubsan1:armhf (15.2.0-12ubuntu1) ... 1080s Setting up libpcre2-posix3:armhf (10.46-1) ... 1080s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 1080s Setting up libasan8:armhf (15.2.0-12ubuntu1) ... 1080s Setting up libisl23:armhf (0.27-1build1) ... 1080s Setting up libc-dev-bin (2.42-2ubuntu4) ... 1080s Setting up libdeflate-dev:armhf (1.23-2build1) ... 1080s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1080s Setting up libcc1-0:armhf (15.2.0-12ubuntu1) ... 1080s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1080s Setting up libblas-dev:armhf (3.12.1-7ubuntu1) ... 1080s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 1080s Setting up dctrl-tools (2.24-3build4) ... 1080s Setting up libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 1080s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1080s Setting up libgfortran-15-dev:armhf (15.2.0-12ubuntu1) ... 1080s Setting up pkgconf:armhf (1.8.1-4build1) ... 1080s Setting up liblapack-dev:armhf (3.12.1-7ubuntu1) ... 1080s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 1080s Setting up cpp-15 (15.2.0-12ubuntu1) ... 1080s Setting up cpp (4:15.2.0-4ubuntu1) ... 1080s Setting up libc6-dev:armhf (2.42-2ubuntu4) ... 1080s Setting up libicu-dev:armhf (78.2-1ubuntu1) ... 1080s Setting up libbz2-dev:armhf (1.0.8-6build2) ... 1080s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1080s Setting up libjpeg-turbo8-dev:armhf (2.1.5-4ubuntu3) ... 1080s Setting up libncurses-dev:armhf (6.6+20251231-1) ... 1080s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1080s Setting up libpcre2-dev:armhf (10.46-1) ... 1080s Setting up libreadline-dev:armhf (8.3-3) ... 1080s Setting up gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1080s Setting up gcc-15 (15.2.0-12ubuntu1) ... 1080s Setting up libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 1080s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1080s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 1080s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 1080s Setting up libpng-dev:armhf (1.6.54-1) ... 1080s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 1080s Setting up g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 1080s Setting up gcc (4:15.2.0-4ubuntu1) ... 1080s Setting up g++-15 (15.2.0-12ubuntu1) ... 1080s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 1080s Setting up gfortran (4:15.2.0-4ubuntu1) ... 1080s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1080s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1080s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1080s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1080s Setting up g++ (4:15.2.0-4ubuntu1) ... 1080s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1080s Setting up build-essential (12.12ubuntu2) ... 1080s Setting up r-base-dev (4.5.2-1ubuntu2) ... 1080s Setting up pkg-r-autopkgtest (20250812) ... 1080s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1080s Processing triggers for man-db (2.13.1-1build1) ... 1081s Processing triggers for install-info (7.2-5) ... 1089s autopkgtest [23:10:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1089s autopkgtest [23:10:44]: test pkg-r-autopkgtest: [----------------------- 1091s Test: Try to load the R library adegraphics 1091s 1091s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1091s Copyright (C) 2025 The R Foundation for Statistical Computing 1091s Platform: arm-unknown-linux-gnueabihf (32-bit) 1091s 1091s R is free software and comes with ABSOLUTELY NO WARRANTY. 1091s You are welcome to redistribute it under certain conditions. 1091s Type 'license()' or 'licence()' for distribution details. 1091s 1091s R is a collaborative project with many contributors. 1091s Type 'contributors()' for more information and 1091s 'citation()' on how to cite R or R packages in publications. 1091s 1091s Type 'demo()' for some demos, 'help()' for on-line help, or 1091s 'help.start()' for an HTML browser interface to help. 1091s Type 'q()' to quit R. 1091s 1091s > library('adegraphics') 1092s Registered S3 methods overwritten by 'adegraphics': 1092s method from 1092s biplot.dudi ade4 1092s kplot.foucart ade4 1092s kplot.mcoa ade4 1092s kplot.mfa ade4 1092s kplot.pta ade4 1092s kplot.sepan ade4 1092s kplot.statis ade4 1092s scatter.coa ade4 1092s scatter.dudi ade4 1092s scatter.nipals ade4 1092s scatter.pco ade4 1092s score.acm ade4 1092s score.mix ade4 1092s score.pca ade4 1092s screeplot.dudi ade4 1092s > 1092s autopkgtest [23:10:47]: test pkg-r-autopkgtest: -----------------------] 1097s pkg-r-autopkgtest PASS 1097s autopkgtest [23:10:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1100s autopkgtest [23:10:55]: @@@@@@@@@@@@@@@@@@@@ summary 1100s run-unit-test PASS 1100s pkg-r-autopkgtest PASS