0s autopkgtest [23:11:03]: starting date and time: 2026-02-09 23:11:03+0000 0s autopkgtest [23:11:03]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:11:03]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.37hr667a/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-tcgabiolinks --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/resolute/armhf 25s autopkgtest [23:11:28]: testbed dpkg architecture: armhf 27s autopkgtest [23:11:30]: testbed apt version: 3.1.15 31s autopkgtest [23:11:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [23:11:36]: testbed release detected to be: None 41s autopkgtest [23:11:44]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 44s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 44s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 47s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 48s Get:11 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 76s Get:12 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 76s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 81s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 99s Fetched 43.5 MB in 56s (773 kB/s) 100s Reading package lists... 106s autopkgtest [23:12:49]: upgrading testbed (apt dist-upgrade and autopurge) 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Calculating upgrade... 109s The following packages will be upgraded: 109s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 109s libip6tc2 libxtables12 wget 109s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 2407 kB of archives. 109s After this operation, 152 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 110s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 110s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 110s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 110s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 111s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 112s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 112s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 112s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 113s Preconfiguring packages ... 113s Fetched 2407 kB in 3s (710 kB/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 113s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 113s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 113s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 113s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 113s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 113s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 113s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 113s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 113s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 113s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 113s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 113s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 114s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 114s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 114s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 114s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 114s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 114s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 114s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 114s Setting up wget (1.25.0-2ubuntu4) ... 114s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 114s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 114s Setting up dracut-install (109-11ubuntu1) ... 114s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 114s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 114s Setting up iptables (1.8.11-2ubuntu3) ... 114s Setting up iproute2 (6.18.0-1ubuntu1) ... 114s Processing triggers for man-db (2.13.1-1build1) ... 115s Processing triggers for install-info (7.2-5) ... 115s Processing triggers for libc-bin (2.42-2ubuntu4) ... 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Solving dependencies... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [23:13:03]: rebooting testbed after setup commands that affected boot 162s autopkgtest [23:13:45]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 187s autopkgtest [23:14:10]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tcgabiolinks 207s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (dsc) [2553 B] 207s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (tar) [7628 kB] 207s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (diff) [5196 B] 207s gpgv: Signature made Fri Mar 14 02:39:49 2025 UTC 207s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 207s gpgv: issuer "plessy@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tcgabiolinks_2.34.1+dfsg-1.dsc: no acceptable signature found 208s autopkgtest [23:14:31]: testing package r-bioc-tcgabiolinks version 2.34.1+dfsg-1 210s autopkgtest [23:14:33]: build not needed 214s autopkgtest [23:14:37]: test pkg-r-autopkgtest: preparing testbed 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 217s Solving dependencies... 217s Some packages could not be installed. This may mean that you have 217s requested an impossible situation or if you are using the unstable 217s distribution that some required packages have not yet been created 217s or been moved out of Incoming. 217s The following information may help to resolve the situation: 217s 217s The following packages have unmet dependencies: 217s satisfy:command-line : Depends: r-bioc-tcgabiolinks but it is not going to be installed 217s Depends: r-cran-jpeg but it is not going to be installed 217s Depends: r-cran-png but it is not going to be installed 217s Depends: r-cran-rmarkdown but it is not going to be installed 217s Depends: r-cran-devtools but it is not going to be installed 217s Depends: r-cran-parmigene but it is not going to be installed 217s Depends: r-bioc-biobase but it is not going to be installed 217s Depends: r-bioc-affy but it is not installable 217s Depends: r-cran-testthat but it is not going to be installed 217s Depends: r-bioc-annotationhub but it is not going to be installed 217s Depends: r-cran-seurat but it is not going to be installed 217s Depends: r-cran-circlize but it is not going to be installed 217s Depends: r-bioc-consensusclusterplus but it is not going to be installed 217s Depends: r-cran-igraph but it is not going to be installed 217s Depends: r-bioc-limma but it is not installable 217s Depends: r-bioc-genefilter but it is not installable 217s Depends: r-cran-gridextra but it is not going to be installed 217s Depends: r-cran-survival but it is not going to be installed 217s Depends: r-cran-doparallel but it is not going to be installed 217s Depends: r-cran-ggrepel but it is not going to be installed 217s Depends: r-cran-scales but it is not going to be installed 217s Depends: r-cran-dt but it is not going to be installed 217s Depends: pkg-r-autopkgtest but it is not going to be installed 217s Depends: r-cran-jpeg but it is not going to be installed 217s Depends: r-cran-png but it is not going to be installed 217s Depends: r-bioc-biocstyle but it is not going to be installed 217s Depends: r-cran-rmarkdown but it is not going to be installed 217s Depends: r-cran-devtools but it is not going to be installed 217s Depends: r-cran-parmigene but it is not going to be installed 217s Depends: r-bioc-biobase but it is not going to be installed 217s Depends: r-bioc-affy but it is not installable 217s Depends: r-cran-testthat but it is not going to be installed 217s Depends: r-bioc-annotationhub but it is not going to be installed 217s Depends: r-bioc-experimenthub but it is not going to be installed 217s Depends: r-cran-seurat but it is not going to be installed 217s Depends: r-bioc-complexheatmap but it is not going to be installed 217s Depends: r-cran-circlize but it is not going to be installed 217s Depends: r-bioc-consensusclusterplus but it is not going to be installed 217s Depends: r-cran-igraph but it is not going to be installed 217s Depends: r-bioc-limma but it is not installable 217s Depends: r-bioc-edger but it is not installable 217s Depends: r-bioc-sva but it is not installable 217s Depends: r-bioc-edaseq but it is not going to be installed 217s Depends: r-cran-survminer but it is not going to be installed 217s Depends: r-bioc-genefilter but it is not installable 217s Depends: r-cran-gridextra but it is not going to be installed 217s Depends: r-cran-survival but it is not going to be installed 217s Depends: r-cran-doparallel but it is not going to be installed 217s Depends: r-cran-ggrepel (>= 0.6.3) but it is not going to be installed 217s Depends: r-cran-scales but it is not going to be installed 217s Depends: r-cran-dt but it is not going to be installed 217s E: Unable to satisfy dependencies. Reached two conflicting assignments: 217s 1. satisfy:command-line:armhf=1 is selected for install 217s 2. satisfy:command-line:armhf Depends r-bioc-affy 217s but none of the choices are installable: 217s [no choices] 217s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Solving dependencies... 221s Some packages could not be installed. This may mean that you have 221s requested an impossible situation or if you are using the unstable 221s distribution that some required packages have not yet been created 221s or been moved out of Incoming. 221s The following information may help to resolve the situation: 221s 221s The following packages have unmet dependencies: 222s satisfy:command-line : Depends: r-bioc-tcgabiolinks but it is not going to be installed 222s Depends: r-cran-jpeg but it is not going to be installed 222s Depends: r-cran-png but it is not going to be installed 222s Depends: r-cran-rmarkdown but it is not going to be installed 222s Depends: r-cran-devtools but it is not going to be installed 222s Depends: r-cran-parmigene but it is not going to be installed 222s Depends: r-bioc-biobase but it is not going to be installed 222s Depends: r-bioc-affy but it is not installable 222s Depends: r-cran-testthat but it is not going to be installed 222s Depends: r-bioc-annotationhub but it is not going to be installed 222s Depends: r-cran-seurat but it is not going to be installed 222s Depends: r-cran-circlize but it is not going to be installed 222s Depends: r-bioc-consensusclusterplus but it is not going to be installed 222s Depends: r-cran-igraph but it is not going to be installed 222s Depends: r-bioc-limma but it is not installable 222s Depends: r-bioc-genefilter but it is not installable 222s Depends: r-cran-gridextra but it is not going to be installed 222s Depends: r-cran-survival but it is not going to be installed 222s Depends: r-cran-doparallel but it is not going to be installed 222s Depends: r-cran-ggrepel but it is not going to be installed 222s Depends: r-cran-scales but it is not going to be installed 222s Depends: r-cran-dt but it is not going to be installed 222s Depends: pkg-r-autopkgtest but it is not going to be installed 222s Depends: r-cran-jpeg but it is not going to be installed 222s Depends: r-cran-png but it is not going to be installed 222s Depends: r-bioc-biocstyle but it is not going to be installed 222s Depends: r-cran-rmarkdown but it is not going to be installed 222s Depends: r-cran-devtools but it is not going to be installed 222s Depends: r-cran-parmigene but it is not going to be installed 222s Depends: r-bioc-biobase but it is not going to be installed 222s Depends: r-bioc-affy but it is not installable 222s Depends: r-cran-testthat but it is not going to be installed 222s Depends: r-bioc-annotationhub but it is not going to be installed 222s Depends: r-bioc-experimenthub but it is not going to be installed 222s Depends: r-cran-seurat but it is not going to be installed 222s Depends: r-bioc-complexheatmap but it is not going to be installed 222s Depends: r-cran-circlize but it is not going to be installed 222s Depends: r-bioc-consensusclusterplus but it is not going to be installed 222s Depends: r-cran-igraph but it is not going to be installed 222s Depends: r-bioc-limma but it is not installable 222s Depends: r-bioc-edger but it is not installable 222s Depends: r-bioc-sva but it is not installable 222s Depends: r-bioc-edaseq but it is not going to be installed 222s Depends: r-cran-survminer but it is not going to be installed 222s Depends: r-bioc-genefilter but it is not installable 222s Depends: r-cran-gridextra but it is not going to be installed 222s Depends: r-cran-survival but it is not going to be installed 222s Depends: r-cran-doparallel but it is not going to be installed 222s Depends: r-cran-ggrepel (>= 0.6.3) but it is not going to be installed 222s Depends: r-cran-scales but it is not going to be installed 222s Depends: r-cran-dt but it is not going to be installed 222s E: Unable to satisfy dependencies. Reached two conflicting assignments: 222s 1. satisfy:command-line:armhf=1 is selected for install 222s 2. satisfy:command-line:armhf Depends r-bioc-affy 222s but none of the choices are installable: 222s [no choices] 222s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 222s autopkgtest [23:14:45]: @@@@@@@@@@@@@@@@@@@@ summary 222s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set