0s autopkgtest [23:09:54]: starting date and time: 2026-02-09 23:09:54+0000 0s autopkgtest [23:09:54]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:09:54]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9yag0yvj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-progeny --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.207 lxd-armhf-10.145.243.207:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [23:10:15]: testbed dpkg architecture: armhf 22s autopkgtest [23:10:16]: testbed apt version: 3.1.15 27s autopkgtest [23:10:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [23:10:23]: testbed release detected to be: None 37s autopkgtest [23:10:31]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 39s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 40s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 40s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 40s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 40s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 43s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 43s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 45s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 45s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 47s Get:12 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 48s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 81s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 100s Fetched 43.5 MB in 1min 2s (704 kB/s) 102s Reading package lists... 108s autopkgtest [23:11:42]: upgrading testbed (apt dist-upgrade and autopurge) 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s Calculating upgrade... 112s The following packages will be upgraded: 112s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 112s libip6tc2 libxtables12 wget 112s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 2407 kB of archives. 112s After this operation, 152 kB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 113s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 113s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 113s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 113s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 114s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 114s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 115s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 115s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 116s Preconfiguring packages ... 116s Fetched 2407 kB in 4s (681 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 116s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 116s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 116s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 116s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 116s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 116s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 116s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 116s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 117s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 117s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 117s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 117s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 117s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 117s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 117s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 117s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 117s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 117s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 117s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 117s Setting up wget (1.25.0-2ubuntu4) ... 117s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 117s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 117s Setting up dracut-install (109-11ubuntu1) ... 117s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 117s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 117s Setting up iptables (1.8.11-2ubuntu3) ... 117s Setting up iproute2 (6.18.0-1ubuntu1) ... 118s Processing triggers for man-db (2.13.1-1build1) ... 119s Processing triggers for install-info (7.2-5) ... 119s Processing triggers for libc-bin (2.42-2ubuntu4) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Solving dependencies... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s autopkgtest [23:11:59]: rebooting testbed after setup commands that affected boot 169s autopkgtest [23:12:43]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 194s autopkgtest [23:13:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-progeny 216s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (dsc) [2216 B] 216s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (tar) [9051 kB] 216s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-progeny 1.28.0+ds-2 (diff) [3952 B] 216s gpgv: Signature made Sun Jan 12 02:52:19 2025 UTC 216s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 216s gpgv: issuer "crusoe@debian.org" 216s gpgv: Can't check signature: No public key 216s dpkg-source: warning: cannot verify inline signature for ./r-bioc-progeny_1.28.0+ds-2.dsc: no acceptable signature found 216s autopkgtest [23:13:30]: testing package r-bioc-progeny version 1.28.0+ds-2 219s autopkgtest [23:13:33]: build not needed 222s autopkgtest [23:13:36]: test pkg-r-autopkgtest: preparing testbed 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 225s Solving dependencies... 225s Some packages could not be installed. This may mean that you have 225s requested an impossible situation or if you are using the unstable 225s distribution that some required packages have not yet been created 225s or been moved out of Incoming. 225s The following information may help to resolve the situation: 225s 225s The following packages have unmet dependencies: 225s satisfy:command-line : Depends: r-bioc-progeny but it is not going to be installed 225s Depends: r-bioc-biomart but it is not going to be installed 225s Depends: r-bioc-biocfilecache but it is not going to be installed 225s Depends: r-cran-broom but it is not going to be installed 225s Depends: r-cran-seurat but it is not going to be installed 225s Depends: r-bioc-deseq2 but it is not installable 225s Depends: r-cran-knitr but it is not going to be installed 225s Depends: r-cran-readr but it is not going to be installed 225s Depends: r-cran-readxl but it is not going to be installed 225s Depends: r-cran-pheatmap but it is not going to be installed 225s Depends: r-cran-tibble but it is not going to be installed 225s Depends: r-cran-rmarkdown but it is not going to be installed 225s Depends: r-cran-testthat but it is not going to be installed 225s Depends: pkg-r-autopkgtest but it is not going to be installed 225s Depends: r-bioc-biomart but it is not going to be installed 225s Depends: r-bioc-biocfilecache but it is not going to be installed 225s Depends: r-cran-broom but it is not going to be installed 225s Depends: r-cran-seurat but it is not going to be installed 225s Depends: r-bioc-singlecellexperiment but it is not going to be installed 225s Depends: r-bioc-deseq2 but it is not installable 225s Depends: r-bioc-biocstyle but it is not going to be installed 225s Depends: r-cran-knitr but it is not going to be installed 225s Depends: r-cran-readr but it is not going to be installed 225s Depends: r-cran-readxl but it is not going to be installed 225s Depends: r-cran-pheatmap but it is not going to be installed 225s Depends: r-cran-tibble but it is not going to be installed 225s Depends: r-cran-rmarkdown but it is not going to be installed 225s Depends: r-cran-testthat (>= 2.1.0) but it is not going to be installed 225s E: Unable to satisfy dependencies. Reached two conflicting assignments: 225s 1. satisfy:command-line:armhf=1 is selected for install 225s 2. satisfy:command-line:armhf Depends r-bioc-deseq2 225s but none of the choices are installable: 225s [no choices] 225s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 230s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s Solving dependencies... 230s Some packages could not be installed. This may mean that you have 230s requested an impossible situation or if you are using the unstable 230s distribution that some required packages have not yet been created 230s or been moved out of Incoming. 230s The following information may help to resolve the situation: 230s 230s The following packages have unmet dependencies: 231s satisfy:command-line : Depends: r-bioc-progeny but it is not going to be installed 231s Depends: r-bioc-biomart but it is not going to be installed 231s Depends: r-bioc-biocfilecache but it is not going to be installed 231s Depends: r-cran-broom but it is not going to be installed 231s Depends: r-cran-seurat but it is not going to be installed 231s Depends: r-bioc-deseq2 but it is not installable 231s Depends: r-cran-knitr but it is not going to be installed 231s Depends: r-cran-readr but it is not going to be installed 231s Depends: r-cran-readxl but it is not going to be installed 231s Depends: r-cran-pheatmap but it is not going to be installed 231s Depends: r-cran-tibble but it is not going to be installed 231s Depends: r-cran-rmarkdown but it is not going to be installed 231s Depends: r-cran-testthat but it is not going to be installed 231s Depends: pkg-r-autopkgtest but it is not going to be installed 231s Depends: r-bioc-biomart but it is not going to be installed 231s Depends: r-bioc-biocfilecache but it is not going to be installed 231s Depends: r-cran-broom but it is not going to be installed 231s Depends: r-cran-seurat but it is not going to be installed 231s Depends: r-bioc-singlecellexperiment but it is not going to be installed 231s Depends: r-bioc-deseq2 but it is not installable 231s Depends: r-bioc-biocstyle but it is not going to be installed 231s Depends: r-cran-knitr but it is not going to be installed 231s Depends: r-cran-readr but it is not going to be installed 231s Depends: r-cran-readxl but it is not going to be installed 231s Depends: r-cran-pheatmap but it is not going to be installed 231s Depends: r-cran-tibble but it is not going to be installed 231s Depends: r-cran-rmarkdown but it is not going to be installed 231s Depends: r-cran-testthat (>= 2.1.0) but it is not going to be installed 231s E: Unable to satisfy dependencies. Reached two conflicting assignments: 231s 1. satisfy:command-line:armhf=1 is selected for install 231s 2. satisfy:command-line:armhf Depends r-bioc-deseq2 231s but none of the choices are installable: 231s [no choices] 231s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 231s autopkgtest [23:13:45]: @@@@@@@@@@@@@@@@@@@@ summary 231s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set