0s autopkgtest [23:09:41]: starting date and time: 2026-02-09 23:09:41+0000 0s autopkgtest [23:09:41]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:09:41]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i20h6lu3/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-phyloseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.58 lxd-armhf-10.145.243.58:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [23:10:02]: testbed dpkg architecture: armhf 22s autopkgtest [23:10:03]: testbed apt version: 3.1.15 26s autopkgtest [23:10:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [23:10:09]: testbed release detected to be: None 36s autopkgtest [23:10:17]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 39s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 39s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 40s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 40s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 40s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 44s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 44s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 46s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 48s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 78s Get:13 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 80s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 103s Fetched 43.5 MB in 1min 5s (669 kB/s) 104s Reading package lists... 110s autopkgtest [23:11:31]: upgrading testbed (apt dist-upgrade and autopurge) 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade... 113s The following packages will be upgraded: 113s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 113s libip6tc2 libxtables12 wget 113s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 2407 kB of archives. 113s After this operation, 152 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 114s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 114s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 114s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 114s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 115s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 115s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 116s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 116s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 117s Preconfiguring packages ... 117s Fetched 2407 kB in 3s (788 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 117s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 117s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 117s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 117s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 117s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 117s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 117s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 117s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 117s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 117s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 117s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 117s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 117s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 117s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 117s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 117s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 117s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 117s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 117s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 117s Setting up wget (1.25.0-2ubuntu4) ... 117s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 117s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 117s Setting up dracut-install (109-11ubuntu1) ... 117s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 117s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 117s Setting up iptables (1.8.11-2ubuntu3) ... 117s Setting up iproute2 (6.18.0-1ubuntu1) ... 118s Processing triggers for man-db (2.13.1-1build1) ... 119s Processing triggers for install-info (7.2-5) ... 119s Processing triggers for libc-bin (2.42-2ubuntu4) ... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Solving dependencies... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s autopkgtest [23:11:45]: rebooting testbed after setup commands that affected boot 167s autopkgtest [23:12:28]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 193s autopkgtest [23:12:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-phyloseq 206s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (dsc) [2370 B] 206s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (tar) [1607 kB] 206s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (diff) [14.7 kB] 206s gpgv: Signature made Sun Jan 12 19:19:58 2025 UTC 206s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 206s gpgv: issuer "crusoe@debian.org" 206s gpgv: Can't check signature: No public key 206s dpkg-source: warning: cannot verify inline signature for ./r-bioc-phyloseq_1.50.0+dfsg-2.dsc: no acceptable signature found 206s autopkgtest [23:13:07]: testing package r-bioc-phyloseq version 1.50.0+dfsg-2 209s autopkgtest [23:13:10]: build not needed 214s autopkgtest [23:13:15]: test pkg-r-autopkgtest: preparing testbed 215s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Solving dependencies... 216s Some packages could not be installed. This may mean that you have 216s requested an impossible situation or if you are using the unstable 216s distribution that some required packages have not yet been created 216s or been moved out of Incoming. 216s The following information may help to resolve the situation: 216s 216s The following packages have unmet dependencies: 216s satisfy:command-line : Depends: r-bioc-phyloseq but it is not going to be installed 216s Depends: r-bioc-deseq2 but it is not installable 216s Depends: r-bioc-genefilter but it is not installable 216s Depends: r-cran-knitr but it is not going to be installed 216s Depends: r-cran-magrittr but it is not going to be installed 216s Depends: r-cran-rmarkdown but it is not going to be installed 216s Depends: r-cran-testthat but it is not going to be installed 216s Depends: pkg-r-autopkgtest but it is not going to be installed 216s Depends: r-bioc-biocstyle (>= 2.4) but it is not going to be installed 216s Depends: r-bioc-deseq2 (>= 1.16.1) but it is not installable 216s Depends: r-bioc-genefilter (>= 1.58) but it is not installable 216s Depends: r-cran-knitr (>= 1.16) but it is not going to be installed 216s Depends: r-cran-magrittr (>= 1.5) but it is not going to be installed 216s Depends: r-bioc-metagenomeseq (>= 1.14) but it is not going to be installed 216s Depends: r-cran-rmarkdown (>= 1.6) but it is not going to be installed 216s Depends: r-cran-testthat (>= 1.0.2) but it is not going to be installed 216s E: Unable to satisfy dependencies. Reached two conflicting assignments: 216s 1. satisfy:command-line:armhf=1 is selected for install 216s 2. satisfy:command-line:armhf Depends r-bioc-deseq2 216s but none of the choices are installable: 216s [no choices] 216s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Solving dependencies... 220s Some packages could not be installed. This may mean that you have 220s requested an impossible situation or if you are using the unstable 220s distribution that some required packages have not yet been created 220s or been moved out of Incoming. 220s The following information may help to resolve the situation: 220s 220s The following packages have unmet dependencies: 221s satisfy:command-line : Depends: r-bioc-phyloseq but it is not going to be installed 221s Depends: r-bioc-deseq2 but it is not installable 221s Depends: r-bioc-genefilter but it is not installable 221s Depends: r-cran-knitr but it is not going to be installed 221s Depends: r-cran-magrittr but it is not going to be installed 221s Depends: r-cran-rmarkdown but it is not going to be installed 221s Depends: r-cran-testthat but it is not going to be installed 221s Depends: pkg-r-autopkgtest but it is not going to be installed 221s Depends: r-bioc-biocstyle (>= 2.4) but it is not going to be installed 221s Depends: r-bioc-deseq2 (>= 1.16.1) but it is not installable 221s Depends: r-bioc-genefilter (>= 1.58) but it is not installable 221s Depends: r-cran-knitr (>= 1.16) but it is not going to be installed 221s Depends: r-cran-magrittr (>= 1.5) but it is not going to be installed 221s Depends: r-bioc-metagenomeseq (>= 1.14) but it is not going to be installed 221s Depends: r-cran-rmarkdown (>= 1.6) but it is not going to be installed 221s Depends: r-cran-testthat (>= 1.0.2) but it is not going to be installed 221s E: Unable to satisfy dependencies. Reached two conflicting assignments: 221s 1. satisfy:command-line:armhf=1 is selected for install 221s 2. satisfy:command-line:armhf Depends r-bioc-deseq2 221s but none of the choices are installable: 221s [no choices] 221s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 221s autopkgtest [23:13:22]: @@@@@@@@@@@@@@@@@@@@ summary 221s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set