0s autopkgtest [23:09:31]: starting date and time: 2026-02-09 23:09:31+0000 0s autopkgtest [23:09:31]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:09:31]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gm_2xcna/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-mutationalpatterns --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.46 lxd-armhf-10.145.243.46:autopkgtest/ubuntu/resolute/armhf 25s autopkgtest [23:09:56]: testbed dpkg architecture: armhf 27s autopkgtest [23:09:58]: testbed apt version: 3.1.15 31s autopkgtest [23:10:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [23:10:04]: testbed release detected to be: None 40s autopkgtest [23:10:11]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 44s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 44s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 48s Get:11 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 49s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 83s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 108s Fetched 43.5 MB in 1min 6s (664 kB/s) 109s Reading package lists... 115s autopkgtest [23:11:26]: upgrading testbed (apt dist-upgrade and autopurge) 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following packages will be upgraded: 118s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 118s libip6tc2 libxtables12 wget 118s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 2407 kB of archives. 118s After this operation, 152 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 118s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 118s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 118s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 118s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 120s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 120s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 120s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 121s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 121s Preconfiguring packages ... 121s Fetched 2407 kB in 3s (759 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 121s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 121s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 122s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 122s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 122s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 122s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 122s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 122s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 122s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 122s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 122s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 122s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 122s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 122s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 122s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 122s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 122s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 122s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 122s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 122s Setting up wget (1.25.0-2ubuntu4) ... 122s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 122s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 122s Setting up dracut-install (109-11ubuntu1) ... 122s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 122s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 122s Setting up iptables (1.8.11-2ubuntu3) ... 122s Setting up iproute2 (6.18.0-1ubuntu1) ... 122s Processing triggers for man-db (2.13.1-1build1) ... 124s Processing triggers for install-info (7.2-5) ... 124s Processing triggers for libc-bin (2.42-2ubuntu4) ... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Solving dependencies... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s autopkgtest [23:11:41]: rebooting testbed after setup commands that affected boot 171s autopkgtest [23:12:22]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 197s autopkgtest [23:12:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-mutationalpatterns 211s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (dsc) [2595 B] 211s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (tar) [1925 kB] 211s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (diff) [3564 B] 211s gpgv: Signature made Tue Jan 14 07:53:19 2025 UTC 211s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 211s gpgv: issuer "crusoe@debian.org" 211s gpgv: Can't check signature: No public key 211s dpkg-source: warning: cannot verify inline signature for ./r-bioc-mutationalpatterns_3.16.0+dfsg-2.dsc: no acceptable signature found 211s autopkgtest [23:13:02]: testing package r-bioc-mutationalpatterns version 3.16.0+dfsg-2 214s autopkgtest [23:13:05]: build not needed 219s autopkgtest [23:13:10]: test pkg-r-autopkgtest: preparing testbed 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s Some packages could not be installed. This may mean that you have 222s requested an impossible situation or if you are using the unstable 222s distribution that some required packages have not yet been created 222s or been moved out of Incoming. 222s The following information may help to resolve the situation: 222s 222s The following packages have unmet dependencies: 222s satisfy:command-line : Depends: r-bioc-mutationalpatterns but it is not going to be installed 222s Depends: r-bioc-biomart but it is not going to be installed 222s Depends: r-cran-gridextra but it is not going to be installed 222s Depends: r-bioc-rtracklayer but it is not installable 222s Depends: r-bioc-genomicfeatures but it is not going to be installed 222s Depends: r-bioc-annotationdbi but it is not going to be installed 222s Depends: r-cran-testthat but it is not going to be installed 222s Depends: r-cran-knitr but it is not going to be installed 222s Depends: r-cran-rmarkdown but it is not going to be installed 222s Depends: pkg-r-autopkgtest but it is not going to be installed 222s Depends: r-bioc-biocstyle (>= 2.0.3) but it is not going to be installed 222s Depends: r-bioc-biomart (>= 2.28.0) but it is not going to be installed 222s Depends: r-cran-gridextra (>= 2.2.1) but it is not going to be installed 222s Depends: r-bioc-rtracklayer (>= 1.32.2) but it is not installable 222s Depends: r-bioc-genomicfeatures but it is not going to be installed 222s Depends: r-bioc-annotationdbi but it is not going to be installed 222s Depends: r-cran-testthat but it is not going to be installed 222s Depends: r-cran-knitr but it is not going to be installed 222s Depends: r-cran-rmarkdown but it is not going to be installed 222s E: Unable to satisfy dependencies. Reached two conflicting assignments: 222s 1. satisfy:command-line:armhf=1 is selected for install 222s 2. satisfy:command-line:armhf Depends r-bioc-rtracklayer 222s but none of the choices are installable: 222s [no choices] 222s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Solving dependencies... 226s Some packages could not be installed. This may mean that you have 226s requested an impossible situation or if you are using the unstable 226s distribution that some required packages have not yet been created 226s or been moved out of Incoming. 226s The following information may help to resolve the situation: 226s 226s The following packages have unmet dependencies: 227s satisfy:command-line : Depends: r-bioc-mutationalpatterns but it is not going to be installed 227s Depends: r-bioc-biomart but it is not going to be installed 227s Depends: r-cran-gridextra but it is not going to be installed 227s Depends: r-bioc-rtracklayer but it is not installable 227s Depends: r-bioc-genomicfeatures but it is not going to be installed 227s Depends: r-bioc-annotationdbi but it is not going to be installed 227s Depends: r-cran-testthat but it is not going to be installed 227s Depends: r-cran-knitr but it is not going to be installed 227s Depends: r-cran-rmarkdown but it is not going to be installed 227s Depends: pkg-r-autopkgtest but it is not going to be installed 227s Depends: r-bioc-biocstyle (>= 2.0.3) but it is not going to be installed 227s Depends: r-bioc-biomart (>= 2.28.0) but it is not going to be installed 227s Depends: r-cran-gridextra (>= 2.2.1) but it is not going to be installed 227s Depends: r-bioc-rtracklayer (>= 1.32.2) but it is not installable 227s Depends: r-bioc-genomicfeatures but it is not going to be installed 227s Depends: r-bioc-annotationdbi but it is not going to be installed 227s Depends: r-cran-testthat but it is not going to be installed 227s Depends: r-cran-knitr but it is not going to be installed 227s Depends: r-cran-rmarkdown but it is not going to be installed 227s E: Unable to satisfy dependencies. Reached two conflicting assignments: 227s 1. satisfy:command-line:armhf=1 is selected for install 227s 2. satisfy:command-line:armhf Depends r-bioc-rtracklayer 227s but none of the choices are installable: 227s [no choices] 227s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 227s autopkgtest [23:13:18]: @@@@@@@@@@@@@@@@@@@@ summary 227s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set