0s autopkgtest [23:09:19]: starting date and time: 2026-02-09 23:09:19+0000 0s autopkgtest [23:09:19]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:09:19]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ihw10j9w/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-mofa2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.46 lxd-armhf-10.145.243.46:autopkgtest/ubuntu/resolute/armhf 24s autopkgtest [23:09:43]: testbed dpkg architecture: armhf 26s autopkgtest [23:09:45]: testbed apt version: 3.1.15 30s autopkgtest [23:09:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 31s autopkgtest [23:09:50]: testbed release detected to be: None 39s autopkgtest [23:09:58]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 41s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 41s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 42s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 42s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 42s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 42s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 45s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 45s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 47s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 47s Get:11 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 47s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 83s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 106s Fetched 43.5 MB in 1min 6s (662 kB/s) 107s Reading package lists... 113s autopkgtest [23:11:12]: upgrading testbed (apt dist-upgrade and autopurge) 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 116s The following packages will be upgraded: 116s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 116s libip6tc2 libxtables12 wget 116s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 2407 kB of archives. 116s After this operation, 152 kB of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 117s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 117s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 117s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 117s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 118s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 119s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 119s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 119s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 120s Preconfiguring packages ... 120s Fetched 2407 kB in 3s (720 kB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 120s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 120s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 120s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 120s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 120s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 120s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 120s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 120s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 121s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 121s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 121s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 121s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 121s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 121s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 121s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 121s Setting up wget (1.25.0-2ubuntu4) ... 121s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 121s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 121s Setting up dracut-install (109-11ubuntu1) ... 121s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 121s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 121s Setting up iptables (1.8.11-2ubuntu3) ... 121s Setting up iproute2 (6.18.0-1ubuntu1) ... 121s Processing triggers for man-db (2.13.1-1build1) ... 122s Processing triggers for install-info (7.2-5) ... 122s Processing triggers for libc-bin (2.42-2ubuntu4) ... 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Solving dependencies... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s autopkgtest [23:11:26]: rebooting testbed after setup commands that affected boot 168s autopkgtest [23:12:07]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 196s autopkgtest [23:12:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-mofa2 209s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa2 1.16.0+ds-4 (dsc) [2359 B] 209s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa2 1.16.0+ds-4 (tar) [1790 kB] 209s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa2 1.16.0+ds-4 (diff) [4824 B] 210s gpgv: Signature made Mon Mar 17 11:21:30 2025 UTC 210s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 210s gpgv: issuer "crusoe@debian.org" 210s gpgv: Can't check signature: No public key 210s dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa2_1.16.0+ds-4.dsc: no acceptable signature found 210s autopkgtest [23:12:49]: testing package r-bioc-mofa2 version 1.16.0+ds-4 212s autopkgtest [23:12:51]: build not needed 216s autopkgtest [23:12:55]: test pkg-r-autopkgtest: preparing testbed 218s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s Solving dependencies... 218s Some packages could not be installed. This may mean that you have 218s requested an impossible situation or if you are using the unstable 218s distribution that some required packages have not yet been created 218s or been moved out of Incoming. 218s The following information may help to resolve the situation: 218s 218s The following packages have unmet dependencies: 219s satisfy:command-line : Depends: r-bioc-mofa2 but it is not going to be installed 219s Depends: r-cran-knitr but it is not going to be installed 219s Depends: r-cran-testthat but it is not going to be installed 219s Depends: r-cran-seurat but it is not going to be installed 219s Depends: r-cran-foreach but it is not going to be installed 219s Depends: r-cran-psych but it is not going to be installed 219s Depends: r-bioc-multiassayexperiment but it is not going to be installed 219s Depends: r-bioc-summarizedexperiment but it is not going to be installed 219s Depends: r-cran-mvtnorm but it is not going to be installed 219s Depends: r-cran-ggally but it is not going to be installed 219s Depends: r-cran-rmarkdown but it is not going to be installed 219s Depends: r-cran-data.table but it is not going to be installed 219s Depends: r-cran-tidyverse but it is not going to be installed 219s Depends: r-cran-matrix but it is not going to be installed 219s Depends: r-cran-markdown but it is not going to be installed 219s Depends: pkg-r-autopkgtest but it is not going to be installed 219s Depends: r-cran-knitr but it is not going to be installed 219s Depends: r-cran-testthat but it is not going to be installed 219s Depends: r-cran-seurat but it is not going to be installed 219s Depends: r-cran-seuratobject but it is not going to be installed 219s Depends: r-cran-ggpubr but it is not going to be installed 219s Depends: r-cran-foreach but it is not going to be installed 219s Depends: r-cran-psych but it is not going to be installed 219s Depends: r-bioc-multiassayexperiment but it is not going to be installed 219s Depends: r-bioc-summarizedexperiment but it is not going to be installed 219s Depends: r-bioc-singlecellexperiment but it is not going to be installed 219s Depends: r-cran-ggrastr but it is not going to be installed 219s Depends: r-cran-mvtnorm but it is not going to be installed 219s Depends: r-cran-ggally but it is not going to be installed 219s Depends: r-cran-rmarkdown but it is not going to be installed 219s Depends: r-cran-data.table but it is not going to be installed 219s Depends: r-cran-tidyverse but it is not going to be installed 219s Depends: r-bioc-biocstyle but it is not going to be installed 219s Depends: r-cran-matrix but it is not going to be installed 219s Depends: r-cran-markdown but it is not going to be installed 219s E: Unable to satisfy dependencies. Reached two conflicting assignments: 219s 1. r-bioc-mofa2:armhf is selected for install because: 219s 1. satisfy:command-line:armhf=1 is selected for install 219s 2. satisfy:command-line:armhf Depends r-bioc-mofa2 219s 2. r-bioc-mofa2:armhf Depends r-bioc-rhdf5 219s but none of the choices are installable: 219s [no choices] 219s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 223s Reading package lists... 223s Building dependency tree... 223s Reading state information... 223s Solving dependencies... 223s Some packages could not be installed. This may mean that you have 223s requested an impossible situation or if you are using the unstable 223s distribution that some required packages have not yet been created 223s or been moved out of Incoming. 223s The following information may help to resolve the situation: 223s 223s The following packages have unmet dependencies: 223s satisfy:command-line : Depends: r-bioc-mofa2 but it is not going to be installed 223s Depends: r-cran-knitr but it is not going to be installed 223s Depends: r-cran-testthat but it is not going to be installed 223s Depends: r-cran-seurat but it is not going to be installed 223s Depends: r-cran-foreach but it is not going to be installed 223s Depends: r-cran-psych but it is not going to be installed 223s Depends: r-bioc-multiassayexperiment but it is not going to be installed 223s Depends: r-bioc-summarizedexperiment but it is not going to be installed 223s Depends: r-cran-mvtnorm but it is not going to be installed 223s Depends: r-cran-ggally but it is not going to be installed 223s Depends: r-cran-rmarkdown but it is not going to be installed 223s Depends: r-cran-data.table but it is not going to be installed 223s Depends: r-cran-tidyverse but it is not going to be installed 223s Depends: r-cran-matrix but it is not going to be installed 223s Depends: r-cran-markdown but it is not going to be installed 223s Depends: pkg-r-autopkgtest but it is not going to be installed 223s Depends: r-cran-knitr but it is not going to be installed 223s Depends: r-cran-testthat but it is not going to be installed 223s Depends: r-cran-seurat but it is not going to be installed 223s Depends: r-cran-seuratobject but it is not going to be installed 223s Depends: r-cran-ggpubr but it is not going to be installed 223s Depends: r-cran-foreach but it is not going to be installed 223s Depends: r-cran-psych but it is not going to be installed 223s Depends: r-bioc-multiassayexperiment but it is not going to be installed 223s Depends: r-bioc-summarizedexperiment but it is not going to be installed 223s Depends: r-bioc-singlecellexperiment but it is not going to be installed 223s Depends: r-cran-ggrastr but it is not going to be installed 223s Depends: r-cran-mvtnorm but it is not going to be installed 223s Depends: r-cran-ggally but it is not going to be installed 223s Depends: r-cran-rmarkdown but it is not going to be installed 223s Depends: r-cran-data.table but it is not going to be installed 223s Depends: r-cran-tidyverse but it is not going to be installed 223s Depends: r-bioc-biocstyle but it is not going to be installed 223s Depends: r-cran-matrix but it is not going to be installed 223s Depends: r-cran-markdown but it is not going to be installed 223s E: Unable to satisfy dependencies. Reached two conflicting assignments: 223s 1. r-bioc-mofa2:armhf is selected for install because: 223s 1. satisfy:command-line:armhf=1 is selected for install 223s 2. satisfy:command-line:armhf Depends r-bioc-mofa2 223s 2. r-bioc-mofa2:armhf Depends r-bioc-rhdf5 223s but none of the choices are installable: 223s [no choices] 223s pkg-r-autopkgtest FAIL badpkg 223s blame: r-bioc-mofa2 223s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 223s autopkgtest [23:13:02]: @@@@@@@@@@@@@@@@@@@@ summary 223s pkg-r-autopkgtest FAIL badpkg 223s blame: r-bioc-mofa2 223s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.