0s autopkgtest [22:52:32]: starting date and time: 2026-02-09 22:52:32+0000 0s autopkgtest [22:52:32]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [22:52:32]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d_1xihmw/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-geneplotter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- lxd -r lxd-armhf-10.145.243.115 lxd-armhf-10.145.243.115:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [22:52:53]: testbed dpkg architecture: armhf 23s autopkgtest [22:52:55]: testbed apt version: 3.1.15 26s autopkgtest [22:52:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [22:53:00]: testbed release detected to be: None 36s autopkgtest [22:53:08]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 38s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 38s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 39s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 39s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 42s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 42s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 42s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 43s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 45s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 45s Get:11 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 45s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 47s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 83s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 108s Fetched 43.5 MB in 1min 11s (617 kB/s) 109s Reading package lists... 115s autopkgtest [22:54:27]: upgrading testbed (apt dist-upgrade and autopurge) 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 119s The following packages will be upgraded: 119s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 119s libip6tc2 libxtables12 wget 120s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 2407 kB of archives. 120s After this operation, 152 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 121s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 121s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 121s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 121s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 123s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 123s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 124s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 124s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 125s Preconfiguring packages ... 125s Fetched 2407 kB in 5s (534 kB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 125s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 125s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 125s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 125s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 125s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 125s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 125s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 125s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 125s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 126s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 126s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 126s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 126s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 126s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 126s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 126s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 126s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 126s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 126s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 126s Setting up wget (1.25.0-2ubuntu4) ... 126s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 126s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 126s Setting up dracut-install (109-11ubuntu1) ... 126s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 126s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 126s Setting up iptables (1.8.11-2ubuntu3) ... 126s Setting up iproute2 (6.18.0-1ubuntu1) ... 126s Processing triggers for man-db (2.13.1-1build1) ... 128s Processing triggers for install-info (7.2-5) ... 128s Processing triggers for libc-bin (2.42-2ubuntu4) ... 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [22:54:46]: rebooting testbed after setup commands that affected boot 176s autopkgtest [22:55:28]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 201s autopkgtest [22:55:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geneplotter 214s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (dsc) [2263 B] 214s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (tar) [1377 kB] 214s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (diff) [3976 B] 214s gpgv: Signature made Mon Jan 13 13:50:52 2025 UTC 214s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 214s gpgv: issuer "crusoe@debian.org" 214s gpgv: Can't check signature: No public key 214s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geneplotter_1.84.0+dfsg-2.dsc: no acceptable signature found 214s autopkgtest [22:56:06]: testing package r-bioc-geneplotter version 1.84.0+dfsg-2 217s autopkgtest [22:56:09]: build not needed 228s autopkgtest [22:56:20]: test pkg-r-autopkgtest: preparing testbed 230s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s Solving dependencies... 230s Some packages could not be installed. This may mean that you have 230s requested an impossible situation or if you are using the unstable 230s distribution that some required packages have not yet been created 230s or been moved out of Incoming. 230s The following information may help to resolve the situation: 230s 230s The following packages have unmet dependencies: 231s satisfy:command-line : Depends: r-bioc-geneplotter but it is not going to be installed 231s Depends: r-cran-knitr but it is not going to be installed 231s Depends: pkg-r-autopkgtest but it is not going to be installed 231s Depends: r-bioc-biocstyle but it is not going to be installed 231s Depends: r-cran-knitr but it is not going to be installed 231s E: Unable to satisfy dependencies. Reached two conflicting assignments: 231s 1. r-bioc-annotationdbi:armhf is selected for install because: 231s 1. satisfy:command-line:armhf=1 is selected for install 231s 2. satisfy:command-line:armhf Depends r-bioc-geneplotter 231s 3. r-bioc-geneplotter:armhf Depends r-bioc-annotationdbi 231s 2. r-bioc-annotationdbi:armhf Depends r-bioc-iranges 231s but none of the choices are installable: 231s [no choices] 231s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 236s Solving dependencies... 236s Some packages could not be installed. This may mean that you have 236s requested an impossible situation or if you are using the unstable 236s distribution that some required packages have not yet been created 236s or been moved out of Incoming. 236s The following information may help to resolve the situation: 236s 236s The following packages have unmet dependencies: 237s satisfy:command-line : Depends: r-bioc-geneplotter but it is not going to be installed 237s Depends: r-cran-knitr but it is not going to be installed 237s Depends: pkg-r-autopkgtest but it is not going to be installed 237s Depends: r-bioc-biocstyle but it is not going to be installed 237s Depends: r-cran-knitr but it is not going to be installed 237s E: Unable to satisfy dependencies. Reached two conflicting assignments: 237s 1. r-bioc-annotationdbi:armhf is selected for install because: 237s 1. satisfy:command-line:armhf=1 is selected for install 237s 2. satisfy:command-line:armhf Depends r-bioc-geneplotter 237s 3. r-bioc-geneplotter:armhf Depends r-bioc-annotationdbi 237s 2. r-bioc-annotationdbi:armhf Depends r-bioc-iranges 237s but none of the choices are installable: 237s [no choices] 237s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 237s autopkgtest [22:56:29]: @@@@@@@@@@@@@@@@@@@@ summary 237s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set