0s autopkgtest [23:07:55]: starting date and time: 2026-02-09 23:07:55+0000 0s autopkgtest [23:07:55]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:07:55]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._gqvhivo/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-decontam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [23:08:17]: testbed dpkg architecture: armhf 24s autopkgtest [23:08:19]: testbed apt version: 3.1.15 28s autopkgtest [23:08:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [23:08:25]: testbed release detected to be: None 37s autopkgtest [23:08:32]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 40s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 40s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 41s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 41s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 41s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 41s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 45s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 45s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 48s Get:11 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 80s Get:12 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 80s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 82s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 110s Fetched 43.5 MB in 1min 11s (617 kB/s) 111s Reading package lists... 117s autopkgtest [23:09:52]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 120s The following packages will be upgraded: 120s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 120s libip6tc2 libxtables12 wget 120s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 2407 kB of archives. 120s After this operation, 152 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 121s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 121s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 121s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 121s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 122s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 123s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 123s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 123s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 124s Preconfiguring packages ... 124s Fetched 2407 kB in 3s (692 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 124s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 124s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 124s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 124s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 124s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 124s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 124s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 124s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 125s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 125s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 125s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 125s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 125s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 125s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 125s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 125s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 125s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 125s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 125s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 125s Setting up wget (1.25.0-2ubuntu4) ... 125s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 125s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 125s Setting up dracut-install (109-11ubuntu1) ... 125s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 125s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 125s Setting up iptables (1.8.11-2ubuntu3) ... 125s Setting up iproute2 (6.18.0-1ubuntu1) ... 126s Processing triggers for man-db (2.13.1-1build1) ... 127s Processing triggers for install-info (7.2-5) ... 127s Processing triggers for libc-bin (2.42-2ubuntu4) ... 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Solving dependencies... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [23:10:07]: rebooting testbed after setup commands that affected boot 174s autopkgtest [23:10:49]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 199s autopkgtest [23:11:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-decontam 209s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (dsc) [2139 B] 209s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (tar) [161 kB] 209s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (diff) [5176 B] 209s gpgv: Signature made Sat Jan 11 16:30:45 2025 UTC 209s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 209s gpgv: issuer "crusoe@debian.org" 209s gpgv: Can't check signature: No public key 209s dpkg-source: warning: cannot verify inline signature for ./r-bioc-decontam_1.26.0+dfsg-2.dsc: no acceptable signature found 209s autopkgtest [23:11:24]: testing package r-bioc-decontam version 1.26.0+dfsg-2 212s autopkgtest [23:11:27]: build not needed 215s autopkgtest [23:11:30]: test pkg-r-autopkgtest: preparing testbed 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s Solving dependencies... 217s Some packages could not be installed. This may mean that you have 217s requested an impossible situation or if you are using the unstable 217s distribution that some required packages have not yet been created 217s or been moved out of Incoming. 217s The following information may help to resolve the situation: 217s 217s The following packages have unmet dependencies: 218s satisfy:command-line : Depends: r-bioc-decontam but it is not going to be installed 218s Depends: r-cran-knitr but it is not going to be installed 218s Depends: r-cran-rmarkdown but it is not going to be installed 218s Depends: r-bioc-phyloseq but it is not going to be installed 218s Depends: pkg-r-autopkgtest but it is not going to be installed 218s Depends: r-bioc-biocstyle but it is not going to be installed 218s Depends: r-cran-knitr but it is not going to be installed 218s Depends: r-cran-rmarkdown but it is not going to be installed 218s Depends: r-bioc-phyloseq but it is not going to be installed 218s E: Unable to satisfy dependencies. Reached two conflicting assignments: 218s 1. r-bioc-phyloseq:armhf is selected for install because: 218s 1. satisfy:command-line:armhf=1 is selected for install 218s 2. satisfy:command-line:armhf Depends r-bioc-phyloseq and Depends r-bioc-phyloseq 218s 2. r-bioc-phyloseq:armhf Depends r-bioc-biostrings (>= 2.40.0) 218s but none of the choices are installable: 218s [no choices] 218s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s Some packages could not be installed. This may mean that you have 222s requested an impossible situation or if you are using the unstable 222s distribution that some required packages have not yet been created 222s or been moved out of Incoming. 222s The following information may help to resolve the situation: 222s 222s The following packages have unmet dependencies: 223s satisfy:command-line : Depends: r-bioc-decontam but it is not going to be installed 223s Depends: r-cran-knitr but it is not going to be installed 223s Depends: r-cran-rmarkdown but it is not going to be installed 223s Depends: r-bioc-phyloseq but it is not going to be installed 223s Depends: pkg-r-autopkgtest but it is not going to be installed 223s Depends: r-bioc-biocstyle but it is not going to be installed 223s Depends: r-cran-knitr but it is not going to be installed 223s Depends: r-cran-rmarkdown but it is not going to be installed 223s Depends: r-bioc-phyloseq but it is not going to be installed 223s E: Unable to satisfy dependencies. Reached two conflicting assignments: 223s 1. r-bioc-phyloseq:armhf is selected for install because: 223s 1. satisfy:command-line:armhf=1 is selected for install 223s 2. satisfy:command-line:armhf Depends r-bioc-phyloseq and Depends r-bioc-phyloseq 223s 2. r-bioc-phyloseq:armhf Depends r-bioc-biostrings (>= 2.40.0) 223s but none of the choices are installable: 223s [no choices] 223s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 223s autopkgtest [23:11:38]: @@@@@@@@@@@@@@@@@@@@ summary 223s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set