0s autopkgtest [07:57:15]: starting date and time: 2026-02-05 07:57:15+0000 0s autopkgtest [07:57:15]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [07:57:15]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p89jor7w/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade qtltools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- lxd -r lxd-armhf-10.145.243.188 lxd-armhf-10.145.243.188:autopkgtest/ubuntu/resolute/armhf 27s autopkgtest [07:57:42]: testbed dpkg architecture: armhf 29s autopkgtest [07:57:44]: testbed apt version: 3.1.14 33s autopkgtest [07:57:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 35s autopkgtest [07:57:50]: testbed release detected to be: None 43s autopkgtest [07:57:58]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 45s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 46s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 46s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [253 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1418 kB] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9664 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB] 46s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 47s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 47s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 50s Fetched 43.1 MB in 5s (8276 kB/s) 51s Reading package lists... 57s autopkgtest [07:58:12]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s Calculating upgrade... 61s The following packages will be upgraded: 61s libc-bin libc-gconv-modules-extra libc6 locales 61s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 7850 kB of archives. 61s After this operation, 0 B of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 61s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 61s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 62s Preconfiguring packages ... 62s Fetched 7850 kB in 1s (9469 kB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 62s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 62s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 62s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 63s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 63s readlink: /usr/lib/libeatmydata: No such file or directory 63s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 63s Setting up libc6:armhf (2.42-2ubuntu5) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 63s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 63s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 63s Setting up libc-bin (2.42-2ubuntu5) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 63s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 63s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 64s Setting up locales (2.42-2ubuntu5) ... 65s Generating locales (this might take a while)... 67s en_US.UTF-8... done 67s Generation complete. 67s Processing triggers for systemd (259-1ubuntu3) ... 68s Processing triggers for man-db (2.13.1-1) ... 71s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s autopkgtest [07:58:30]: rebooting testbed after setup commands that affected boot 121s autopkgtest [07:59:16]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 150s autopkgtest [07:59:45]: @@@@@@@@@@@@@@@@@@@@ apt-source qtltools 166s Get:1 http://ftpmaster.internal/ubuntu resolute/universe qtltools 1.3.1+dfsg-4build6 (dsc) [2293 B] 166s Get:2 http://ftpmaster.internal/ubuntu resolute/universe qtltools 1.3.1+dfsg-4build6 (tar) [141 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/universe qtltools 1.3.1+dfsg-4build6 (diff) [13.6 MB] 167s gpgv: Signature made Wed Aug 6 15:09:47 2025 UTC 167s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 167s gpgv: Can't check signature: No public key 167s dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4build6.dsc: no acceptable signature found 167s autopkgtest [08:00:02]: testing package qtltools version 1.3.1+dfsg-4build6 171s autopkgtest [08:00:06]: build not needed 175s autopkgtest [08:00:10]: test run-sample-analysis: preparing testbed 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Solving dependencies... 178s The following NEW packages will be installed: 178s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 178s libboost-iostreams1.88.0 libboost-program-options1.88.0 libcairo2 libdatrie1 178s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 178s libgsl28 libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 libice6 178s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 178s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 178s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 178s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 178s qtltools qtltools-example r-base-core r-mathlib unzip x11-common xdg-utils 178s zip 179s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 57.1 MB of archives. 179s After this operation, 98.9 MB of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 179s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 179s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 179s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 179s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 179s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.17.1-3ubuntu1 [180 kB] 179s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 179s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libboost-iostreams1.88.0 armhf 1.88.0-1.4ubuntu3 [260 kB] 179s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libboost-program-options1.88.0 armhf 1.88.0-1.4ubuntu3 [345 kB] 179s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 179s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 179s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 179s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 180s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 180s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 180s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 180s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 180s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 180s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 180s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf libgslcblas0 armhf 2.8+dfsg-6 [85.2 kB] 180s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf libgsl28 armhf 2.8+dfsg-6 [889 kB] 180s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 180s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf libhtscodecs2 armhf 1.6.1-2build1 [67.0 kB] 180s Get:24 http://ftpmaster.internal/ubuntu resolute/universe armhf libhts3t64 armhf 1.22.1+ds2-1 [408 kB] 180s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 180s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 180s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 180s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 180s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 180s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 180s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 180s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 180s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.57.0-1 [218 kB] 180s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.57.0-1 [45.2 kB] 180s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.57.0-1 [25.3 kB] 180s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 180s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 180s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 180s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 180s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 180s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 180s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 180s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 180s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 180s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 180s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 180s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 180s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf r-mathlib armhf 4.5.2-1ubuntu2 [2586 kB] 180s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 180s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 180s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 180s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 181s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf qtltools armhf 1.3.1+dfsg-4build6 [964 kB] 181s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf qtltools-example all 1.3.1+dfsg-4build6 [13.6 MB] 182s Preconfiguring packages ... 182s Fetched 57.1 MB in 3s (17.7 MB/s) 182s Selecting previously unselected package libfreetype6:armhf. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 182s Preparing to unpack .../00-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 182s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 182s Selecting previously unselected package fonts-dejavu-mono. 182s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8build1_all.deb ... 182s Unpacking fonts-dejavu-mono (2.37-8build1) ... 183s Selecting previously unselected package fonts-dejavu-core. 183s Preparing to unpack .../02-fonts-dejavu-core_2.37-8build1_all.deb ... 183s Unpacking fonts-dejavu-core (2.37-8build1) ... 183s Selecting previously unselected package fontconfig-config. 183s Preparing to unpack .../03-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 183s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 183s Selecting previously unselected package libfontconfig1:armhf. 183s Preparing to unpack .../04-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 183s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 183s Selecting previously unselected package fontconfig. 183s Preparing to unpack .../05-fontconfig_2.17.1-3ubuntu1_armhf.deb ... 183s Unpacking fontconfig (2.17.1-3ubuntu1) ... 183s Selecting previously unselected package libblas3:armhf. 183s Preparing to unpack .../06-libblas3_3.12.1-7ubuntu1_armhf.deb ... 183s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 183s Selecting previously unselected package libboost-iostreams1.88.0:armhf. 183s Preparing to unpack .../07-libboost-iostreams1.88.0_1.88.0-1.4ubuntu3_armhf.deb ... 183s Unpacking libboost-iostreams1.88.0:armhf (1.88.0-1.4ubuntu3) ... 183s Selecting previously unselected package libboost-program-options1.88.0:armhf. 183s Preparing to unpack .../08-libboost-program-options1.88.0_1.88.0-1.4ubuntu3_armhf.deb ... 183s Unpacking libboost-program-options1.88.0:armhf (1.88.0-1.4ubuntu3) ... 183s Selecting previously unselected package libpixman-1-0:armhf. 183s Preparing to unpack .../09-libpixman-1-0_0.46.4-1_armhf.deb ... 183s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 183s Selecting previously unselected package libxcb-render0:armhf. 183s Preparing to unpack .../10-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 183s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 183s Selecting previously unselected package libxcb-shm0:armhf. 183s Preparing to unpack .../11-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 183s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 183s Selecting previously unselected package libxrender1:armhf. 183s Preparing to unpack .../12-libxrender1_1%3a0.9.12-1_armhf.deb ... 183s Unpacking libxrender1:armhf (1:0.9.12-1) ... 183s Selecting previously unselected package libcairo2:armhf. 183s Preparing to unpack .../13-libcairo2_1.18.4-3_armhf.deb ... 183s Unpacking libcairo2:armhf (1.18.4-3) ... 183s Selecting previously unselected package libdatrie1:armhf. 183s Preparing to unpack .../14-libdatrie1_0.2.14-1_armhf.deb ... 183s Unpacking libdatrie1:armhf (0.2.14-1) ... 183s Selecting previously unselected package libdeflate0:armhf. 183s Preparing to unpack .../15-libdeflate0_1.23-2_armhf.deb ... 183s Unpacking libdeflate0:armhf (1.23-2) ... 183s Selecting previously unselected package libgfortran5:armhf. 184s Preparing to unpack .../16-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 184s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 184s Selecting previously unselected package libgomp1:armhf. 184s Preparing to unpack .../17-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 184s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 184s Selecting previously unselected package libgraphite2-3:armhf. 184s Preparing to unpack .../18-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 184s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 184s Selecting previously unselected package libgslcblas0:armhf. 184s Preparing to unpack .../19-libgslcblas0_2.8+dfsg-6_armhf.deb ... 184s Unpacking libgslcblas0:armhf (2.8+dfsg-6) ... 184s Selecting previously unselected package libgsl28:armhf. 184s Preparing to unpack .../20-libgsl28_2.8+dfsg-6_armhf.deb ... 184s Unpacking libgsl28:armhf (2.8+dfsg-6) ... 184s Selecting previously unselected package libharfbuzz0b:armhf. 184s Preparing to unpack .../21-libharfbuzz0b_12.3.2-1_armhf.deb ... 184s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 184s Selecting previously unselected package libhtscodecs2:armhf. 184s Preparing to unpack .../22-libhtscodecs2_1.6.1-2build1_armhf.deb ... 184s Unpacking libhtscodecs2:armhf (1.6.1-2build1) ... 184s Selecting previously unselected package libhts3t64:armhf. 184s Preparing to unpack .../23-libhts3t64_1.22.1+ds2-1_armhf.deb ... 184s Unpacking libhts3t64:armhf (1.22.1+ds2-1) ... 184s Selecting previously unselected package x11-common. 184s Preparing to unpack .../24-x11-common_1%3a7.7+24ubuntu1_all.deb ... 184s Unpacking x11-common (1:7.7+24ubuntu1) ... 184s Selecting previously unselected package libice6:armhf. 184s Preparing to unpack .../25-libice6_2%3a1.1.1-1build1_armhf.deb ... 184s Unpacking libice6:armhf (2:1.1.1-1build1) ... 184s Selecting previously unselected package libjpeg-turbo8:armhf. 184s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 184s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 184s Selecting previously unselected package libjpeg8:armhf. 184s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_armhf.deb ... 184s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 184s Selecting previously unselected package liblapack3:armhf. 184s Preparing to unpack .../28-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 184s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 184s Selecting previously unselected package liblerc4:armhf. 184s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 184s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 184s Selecting previously unselected package libthai-data. 184s Preparing to unpack .../30-libthai-data_0.1.30-1_all.deb ... 184s Unpacking libthai-data (0.1.30-1) ... 184s Selecting previously unselected package libthai0:armhf. 184s Preparing to unpack .../31-libthai0_0.1.30-1_armhf.deb ... 184s Unpacking libthai0:armhf (0.1.30-1) ... 184s Selecting previously unselected package libpango-1.0-0:armhf. 184s Preparing to unpack .../32-libpango-1.0-0_1.57.0-1_armhf.deb ... 184s Unpacking libpango-1.0-0:armhf (1.57.0-1) ... 184s Selecting previously unselected package libpangoft2-1.0-0:armhf. 184s Preparing to unpack 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liblapack3:armhf (3.12.1-7ubuntu1) ... 187s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 187s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 187s Setting up libpaper-utils (2.2.5-0.3build1) ... 187s Setting up libthai0:armhf (0.1.30-1) ... 187s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 187s Setting up libfontconfig1:armhf (2.17.1-3ubuntu1) ... 187s Setting up libsm6:armhf (2:1.2.6-1) ... 187s Setting up fontconfig (2.17.1-3ubuntu1) ... 189s Regenerating fonts cache... done. 189s Setting up libxft2:armhf (2.3.6-1build2) ... 189s Setting up libtk8.6:armhf (8.6.17-1) ... 189s Setting up libpango-1.0-0:armhf (1.57.0-1) ... 189s Setting up libcairo2:armhf (1.18.4-3) ... 189s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 189s Setting up libpangoft2-1.0-0:armhf (1.57.0-1) ... 189s Setting up libpangocairo-1.0-0:armhf (1.57.0-1) ... 189s Setting up r-base-core (4.5.2-1ubuntu2) ... 189s Creating config file /etc/R/Renviron with new version 189s Setting up qtltools (1.3.1+dfsg-4build6) ... 189s Processing triggers for man-db (2.13.1-1) ... 190s Processing triggers for install-info (7.2-5) ... 190s Processing triggers for libc-bin (2.42-2ubuntu5) ... 203s autopkgtest [08:00:38]: test run-sample-analysis: [----------------------- 206s ./genes.50percent.chr22.bed.gz 206s ./genes.50percent.chr22.bed.gz.tbi 206s ./genes.covariates.pc50.txt.gz 206s ./genes.simulated.chr22.bed.gz 206s ./genes.simulated.chr22.bed.gz.tbi 206s ./genotypes.chr22.vcf.gz 206s ./genotypes.chr22.vcf.gz.tbi 206s 206s QTLtools 206s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 206s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 206s * Webpage : https://qtltools.github.io/qtltools/ 206s * Version : 1.3.1 206s * Date : 05/02/2026 - 08:00:41 206s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 206s 206s CONDUCT PCA ON DATA 206s 206s Initialize random number generator 206s * Built-in seed is 15112011 206s * First Integer = 30553 206s * First Double = 0.0126695 206s 206s Reading sample list from [genes.50percent.chr22.bed.gz] 206s * #samples = 358 206s 206s Merging sample sets from all input files 206s * #files = 1 206s * #samples in all files = 358 206s 206s Reading phenotype data in [genes.50percent.chr22.bed.gz] 206s * 358 samples included 206s * 608 phenotypes included 206s 206s Calculating PCA with a matrix 358 x 608 206s * Calculated mean and sd 206s * 0 sd==0 columns removed 206s * Variables centered 206s * Variables scaled to unit variance 206s * Running SVD 207s * SVD complete 207s * Calculated sd and var for PCs 207s * Calculated cumulative var for PCs 207s * Done! 207s 207s Running time: 1 seconds 207s 207s QTLtools 207s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 207s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 207s * Webpage : https://qtltools.github.io/qtltools/ 207s * Version : 1.3.1 207s * Date : 05/02/2026 - 08:00:42 207s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 207s 207s MAPPING QTL IN CIS 207s * TASK: Report all nominal associations with p <= 0.01 207s * Linear model: Phe ~ Var + Cov 207s * Cis-window size is 1000000 bp 207s * Region = [chr22:17000000-18000000] 207s 207s Initialize random number generator 207s * Built-in seed is 15112011 207s * First Integer = 30553 207s * First Double = 0.0126695 207s 207s Reading sample list from [genes.50percent.chr22.bed.gz] 207s * #samples = 358 207s 207s Read sample list from [genotypes.chr22.vcf.gz] 207s * #samples = 358 207s 207s Reading sample list from [genes.covariates.pc50.txt.gz] 207s * #samples = 358 207s 207s Merging sample sets from all input files 207s * #files = 3 207s * #samples in all files = 358 207s 207s Reading phenotype data in [genes.50percent.chr22.bed.gz] 207s * target region [chr22:17000000-18000000] 207s * 8 phenotypes included 207s * 3 phenotypes are on the negative strand 207s 207s Reading genotype data in [genotypes.chr22.vcf.gz] 207s * File format detected: VCF 207s * target region [chr22:16000000-19000000] 207s * 6404 variants included 207s 207s Reading covariates in [genes.covariates.pc50.txt.gz] 207s * 53 covariates included 207s 207s Residualize phenotypes for covariates 207s * #covariates = 53 207s 207s Processing phenotype [ENSG00000237438.2] [1/8] 207s * #variants in cis = 5095 207s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 207s 207s Processing phenotype [ENSG00000273203.1] [2/8] 207s * #variants in cis = 5170 207s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 207s 207s Processing phenotype [ENSG00000273442.1] [3/8] 207s * #variants in cis = 5188 207s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 207s 207s Processing phenotype [ENSG00000177663.9] [4/8] 207s * #variants in cis = 5193 207s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 207s 207s Processing phenotype [ENSG00000183307.3] [5/8] 207s * #variants in cis = 5230 207s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 207s 207s Processing phenotype [ENSG00000069998.8] [6/8] 207s * #variants in cis = 5291 207s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 207s 207s Processing phenotype [ENSG00000093072.11] [7/8] 207s * #variants in cis = 5293 207s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 207s 207s Processing phenotype [ENSG00000099954.14] [8/8] 207s * #variants in cis = 5435 207s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 207s 207s Running time: 0 seconds 207s 207s QTLtools 207s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 207s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 207s * Webpage : https://qtltools.github.io/qtltools/ 207s * Version : 1.3.1 207s * Date : 05/02/2026 - 08:00:42 207s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 207s 207s MAPPING QTL IN CIS 207s * TASK: Perform 1000 permutations 207s * Linear model: Phe ~ Var + Cov 207s * Cis-window size is 1000000 bp 207s * Region = [chr22:17000000-18000000] 207s 207s Initialize random number generator 207s * Built-in seed is 15112011 207s * First Integer = 30553 207s * First Double = 0.0126695 207s 207s Reading sample list from [genes.50percent.chr22.bed.gz] 207s * #samples = 358 207s 207s Read sample list from [genotypes.chr22.vcf.gz] 207s * #samples = 358 207s 207s Reading sample list from [genes.covariates.pc50.txt.gz] 207s * #samples = 358 207s 207s Merging sample sets from all input files 207s * #files = 3 207s * #samples in all files = 358 207s 207s Reading phenotype data in [genes.50percent.chr22.bed.gz] 207s * target region [chr22:17000000-18000000] 207s * 8 phenotypes included 207s * 3 phenotypes are on the negative strand 207s 207s Reading genotype data in [genotypes.chr22.vcf.gz] 207s * File format detected: VCF 207s * target region [chr22:16000000-19000000] 208s * 6404 variants included 208s 208s Reading covariates in [genes.covariates.pc50.txt.gz] 208s * 53 covariates included 208s 208s Residualize phenotypes for covariates 208s * #covariates = 53 208s 208s Processing phenotype [ENSG00000237438.2] [1/8] 208s * #variants in cis = 5095 209s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 209s * Beta parameters: [s1=1.00995, s2=621.053] 209s * Adjusted p-values: [emp=0.000999001, beta=1.28062e-20] 209s 209s Processing phenotype [ENSG00000273203.1] [2/8] 209s * #variants in cis = 5170 211s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 211s * Beta parameters: [s1=1.11817, s2=641.379] 211s * Adjusted p-values: [emp=0.00799201, beta=0.00751892] 211s 211s Processing phenotype [ENSG00000273442.1] [3/8] 211s * #variants in cis = 5188 212s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 212s * Beta parameters: [s1=1.08364, s2=467.63] 212s * Adjusted p-values: [emp=0.297702, beta=0.293948] 212s 212s Processing phenotype [ENSG00000177663.9] [4/8] 212s * #variants in cis = 5193 214s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 214s * Beta parameters: [s1=0.989061, s2=704.553] 214s * Adjusted p-values: [emp=0.000999001, beta=7.91291e-10] 214s 214s Processing phenotype [ENSG00000183307.3] [5/8] 214s * #variants in cis = 5230 215s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 215s * Beta parameters: [s1=1.01322, s2=559.49] 215s * Adjusted p-values: [emp=0.000999001, beta=0.00050707] 215s 215s Processing phenotype [ENSG00000069998.8] [6/8] 215s * #variants in cis = 5291 217s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 217s * Beta parameters: [s1=1.02312, s2=563.339] 217s * Adjusted p-values: [emp=0.000999001, beta=2.56935e-10] 217s 217s Processing phenotype [ENSG00000093072.11] [7/8] 217s * #variants in cis = 5293 218s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 218s * Beta parameters: [s1=0.957514, s2=559.397] 218s * Adjusted p-values: [emp=0.574426, beta=0.562826] 218s 218s Processing phenotype [ENSG00000099954.14] [8/8] 218s * #variants in cis = 5435 220s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 220s * Beta parameters: [s1=0.938041, s2=226.852] 220s * Adjusted p-values: [emp=0.842158, beta=0.84836] 220s 220s Running time: 12 seconds 220s 220s QTLtools 220s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 220s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 220s * Webpage : https://qtltools.github.io/qtltools/ 220s * Version : 1.3.1 220s * Date : 05/02/2026 - 08:00:55 220s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 220s 220s MAPPING QTL IN TRANS 220s * TASK: Perform a full nominal pass, do not adjust p-values 220s * Cis-window size is 5000000 bp 220s * #bins = 1000 220s * threshold = 1e-05 220s 220s Initialize random number generator 220s * Built-in seed is 15112011 220s * First Integer = 30553 220s * First Double = 0.0126695 220s 220s Read sample list from [genotypes.chr22.vcf.gz] 220s * #samples = 358 220s 220s Checking sample list in [genes.simulated.chr22.bed.gz] 220s * #samples = 358 220s 220s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 220s * 358 samples included 220s * 608 phenotypes included 220s * 275 phenotypes is on the negative strand 220s 220s Calculate correlation threshold 220s * thres = 1e-05 220s * corr = 0.2311 220s 220s Sweep through genotype data in [genotypes.chr22.vcf.gz] 220s * #variants=1950 #multi_allelic=0 #not_processed=0 #hits=101/1000000 speed=2.79MT/s 221s * #variants=4001 #multi_allelic=0 #not_processed=0 #hits=153/2000000 speed=2.79MT/s 221s * #variants=6187 #multi_allelic=0 #not_processed=0 #hits=244/3000000 speed=2.75MT/s 221s * #variants=8537 #multi_allelic=0 #not_processed=0 #hits=285/4000000 speed=2.72MT/s 222s * #variants=11025 #multi_allelic=0 #not_processed=0 #hits=312/5000000 speed=2.70MT/s 222s * #variants=13621 #multi_allelic=0 #not_processed=0 #hits=320/6000000 speed=2.72MT/s 223s * #variants=16217 #multi_allelic=0 #not_processed=0 #hits=342/7000000 speed=2.68MT/s 223s * #variants=18755 #multi_allelic=0 #not_processed=0 #hits=401/8000000 speed=2.66MT/s 223s * #variants=21237 #multi_allelic=0 #not_processed=0 #hits=402/9000000 speed=2.72MT/s 224s * #variants=23680 #multi_allelic=0 #not_processed=0 #hits=455/10000000 speed=2.72MT/s 224s * #variants=26171 #multi_allelic=0 #not_processed=0 #hits=463/11000000 speed=2.70MT/s 224s * #variants=28609 #multi_allelic=0 #not_processed=0 #hits=469/12000000 speed=2.71MT/s 225s * #variants=30861 #multi_allelic=0 #not_processed=0 #hits=973/13000000 speed=2.59MT/s 225s * #variants=32932 #multi_allelic=0 #not_processed=0 #hits=979/14000000 speed=2.72MT/s 226s * #variants=34974 #multi_allelic=0 #not_processed=0 #hits=1085/15000000 speed=2.72MT/s 226s * #variants=37021 #multi_allelic=0 #not_processed=0 #hits=1086/16000000 speed=2.73MT/s 226s * #variants=39122 #multi_allelic=0 #not_processed=0 #hits=1089/17000000 speed=2.73MT/s 227s * #variants=41334 #multi_allelic=0 #not_processed=0 #hits=1089/18000000 speed=2.72MT/s 227s * #variants=43627 #multi_allelic=0 #not_processed=0 #hits=1096/19000000 speed=2.69MT/s 227s * #variants=45897 #multi_allelic=0 #not_processed=0 #hits=1153/20000000 speed=2.72MT/s 228s * #variants=48114 #multi_allelic=0 #not_processed=0 #hits=1243/21000000 speed=2.72MT/s 228s * #variants=50410 #multi_allelic=0 #not_processed=0 #hits=1249/22000000 speed=2.71MT/s 228s * #variants=52820 #multi_allelic=0 #not_processed=0 #hits=1259/23000000 speed=2.67MT/s 229s * #variants=55279 #multi_allelic=0 #not_processed=0 #hits=1498/24000000 speed=2.18MT/s 229s * #variants=57789 #multi_allelic=0 #not_processed=0 #hits=1724/25000000 speed=2.67MT/s 230s * #variants=60201 #multi_allelic=0 #not_processed=0 #hits=2168/26000000 speed=2.66MT/s 230s * #variants=62476 #multi_allelic=0 #not_processed=0 #hits=2452/27000000 speed=2.69MT/s 230s * #variants=64608 #multi_allelic=0 #not_processed=0 #hits=2544/28000000 speed=2.75MT/s 231s * #variants=66709 #multi_allelic=0 #not_processed=0 #hits=2684/29000000 speed=2.75MT/s 231s * #variants=68871 #multi_allelic=0 #not_processed=0 #hits=2688/30000000 speed=2.76MT/s 232s * #variants=71070 #multi_allelic=0 #not_processed=0 #hits=2720/31000000 speed=2.74MT/s 232s * #variants=73151 #multi_allelic=0 #not_processed=0 #hits=2891/32000000 speed=2.75MT/s 232s * #variants=75122 #multi_allelic=0 #not_processed=0 #hits=3110/33000000 speed=2.71MT/s 233s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=3209/34000000 speed=2.75MT/s 233s * #variants=78989 #multi_allelic=0 #not_processed=0 #hits=3218/35000000 speed=2.78MT/s 233s * #variants=80903 #multi_allelic=0 #not_processed=0 #hits=3250/36000000 speed=2.77MT/s 234s * #variants=82811 #multi_allelic=0 #not_processed=0 #hits=3463/37000000 speed=2.74MT/s 234s * #variants=84694 #multi_allelic=0 #not_processed=0 #hits=4035/38000000 speed=2.70MT/s 234s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=4036/38425275 speed=2.80MT/s 234s 234s Running time: 14 seconds 234s 234s QTLtools 234s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 234s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 234s * Webpage : https://qtltools.github.io/qtltools/ 234s * Version : 1.3.1 234s * Date : 05/02/2026 - 08:01:09 234s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 234s 234s MAPPING QTL IN TRANS 234s * TASK: Permute randomly chosen phenotypes 1000 times and test 234s * Cis-window size is 5000000 bp 234s * #bins = 1000 234s * threshold = 1e-05 234s 234s Initialize random number generator 234s * Built-in seed is 15112011 234s * First Integer = 30553 234s * First Double = 0.0126695 234s 234s Read sample list from [genotypes.chr22.vcf.gz] 234s * #samples = 358 234s 234s Checking sample list in [genes.simulated.chr22.bed.gz] 234s * #samples = 358 234s 234s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 234s * 358 samples included 234s * 608 phenotypes included 234s * 275 phenotypes is on the negative strand 234s 234s Normal transform phenotypes 234s 234s Calculate correlation threshold 234s * thres = 1e-05 234s * corr = 0.2311 234s 234s Sweep through genotype data in [genotypes.chr22.vcf.gz] 235s * #variants=1177 #multi_allelic=0 #not_processed=0 #hits=28/1000000 speed=2.53MT/s 235s * #variants=2383 #multi_allelic=0 #not_processed=0 #hits=38/2000000 speed=2.65MT/s 236s * #variants=3633 #multi_allelic=0 #not_processed=0 #hits=53/3000000 speed=2.63MT/s 236s * #variants=4928 #multi_allelic=0 #not_processed=0 #hits=53/4000000 speed=2.60MT/s 236s * #variants=6269 #multi_allelic=0 #not_processed=0 #hits=71/5000000 speed=2.55MT/s 237s * #variants=7675 #multi_allelic=0 #not_processed=0 #hits=72/6000000 speed=2.52MT/s 237s * #variants=9151 #multi_allelic=0 #not_processed=0 #hits=88/7000000 speed=2.48MT/s 238s * #variants=10663 #multi_allelic=0 #not_processed=0 #hits=96/8000000 speed=2.47MT/s 238s * #variants=12202 #multi_allelic=0 #not_processed=0 #hits=96/9000000 speed=2.44MT/s 238s * #variants=13804 #multi_allelic=0 #not_processed=0 #hits=96/10000000 speed=2.40MT/s 239s * #variants=15381 #multi_allelic=0 #not_processed=0 #hits=120/11000000 speed=2.43MT/s 239s * #variants=16946 #multi_allelic=0 #not_processed=0 #hits=123/12000000 speed=2.43MT/s 240s * #variants=18483 #multi_allelic=0 #not_processed=0 #hits=129/13000000 speed=2.44MT/s 240s * #variants=19995 #multi_allelic=0 #not_processed=0 #hits=131/14000000 speed=2.46MT/s 240s * #variants=21489 #multi_allelic=0 #not_processed=0 #hits=132/15000000 speed=2.44MT/s 241s * #variants=22947 #multi_allelic=0 #not_processed=0 #hits=151/16000000 speed=2.44MT/s 241s * #variants=24445 #multi_allelic=0 #not_processed=0 #hits=168/17000000 speed=2.44MT/s 242s * #variants=25965 #multi_allelic=0 #not_processed=0 #hits=175/18000000 speed=2.44MT/s 242s * #variants=27472 #multi_allelic=0 #not_processed=0 #hits=179/19000000 speed=2.44MT/s 242s * #variants=28933 #multi_allelic=0 #not_processed=0 #hits=181/20000000 speed=2.49MT/s 243s * #variants=30325 #multi_allelic=0 #not_processed=0 #hits=181/21000000 speed=2.54MT/s 243s * #variants=31617 #multi_allelic=0 #not_processed=0 #hits=182/22000000 speed=2.60MT/s 244s * #variants=32875 #multi_allelic=0 #not_processed=0 #hits=190/23000000 speed=2.65MT/s 244s * #variants=34127 #multi_allelic=0 #not_processed=0 #hits=192/24000000 speed=2.65MT/s 244s * #variants=35392 #multi_allelic=0 #not_processed=0 #hits=206/25000000 speed=2.64MT/s 245s * #variants=36652 #multi_allelic=0 #not_processed=0 #hits=206/26000000 speed=2.62MT/s 245s * #variants=37940 #multi_allelic=0 #not_processed=0 #hits=213/27000000 speed=2.62MT/s 245s * #variants=39255 #multi_allelic=0 #not_processed=0 #hits=238/28000000 speed=2.58MT/s 246s * #variants=40602 #multi_allelic=0 #not_processed=0 #hits=239/29000000 speed=2.56MT/s 246s * #variants=41998 #multi_allelic=0 #not_processed=0 #hits=245/30000000 speed=2.51MT/s 247s * #variants=43398 #multi_allelic=0 #not_processed=0 #hits=245/31000000 speed=2.52MT/s 247s * #variants=44803 #multi_allelic=0 #not_processed=0 #hits=260/32000000 speed=2.53MT/s 247s * #variants=46187 #multi_allelic=0 #not_processed=0 #hits=261/33000000 speed=2.54MT/s 248s * #variants=47545 #multi_allelic=0 #not_processed=0 #hits=268/34000000 speed=2.56MT/s 248s * #variants=48904 #multi_allelic=0 #not_processed=0 #hits=280/35000000 speed=2.58MT/s 249s * #variants=50309 #multi_allelic=0 #not_processed=0 #hits=306/36000000 speed=2.55MT/s 249s * #variants=51731 #multi_allelic=0 #not_processed=0 #hits=314/37000000 speed=2.54MT/s 249s * #variants=53171 #multi_allelic=0 #not_processed=0 #hits=320/38000000 speed=2.52MT/s 250s * #variants=54621 #multi_allelic=0 #not_processed=0 #hits=323/39000000 speed=2.52MT/s 250s * #variants=56099 #multi_allelic=0 #not_processed=0 #hits=323/40000000 speed=2.51MT/s 251s * #variants=57584 #multi_allelic=0 #not_processed=0 #hits=340/41000000 speed=2.49MT/s 251s * #variants=59032 #multi_allelic=0 #not_processed=0 #hits=344/42000000 speed=2.01MT/s 252s * #variants=60437 #multi_allelic=0 #not_processed=0 #hits=345/43000000 speed=2.55MT/s 252s * #variants=61810 #multi_allelic=0 #not_processed=0 #hits=357/44000000 speed=2.55MT/s 252s * #variants=63129 #multi_allelic=0 #not_processed=0 #hits=384/45000000 speed=2.60MT/s 253s * #variants=64409 #multi_allelic=0 #not_processed=0 #hits=391/46000000 speed=2.67MT/s 253s * #variants=65679 #multi_allelic=0 #not_processed=0 #hits=430/47000000 speed=2.64MT/s 253s * #variants=66953 #multi_allelic=0 #not_processed=0 #hits=436/48000000 speed=2.67MT/s 254s * #variants=68247 #multi_allelic=0 #not_processed=0 #hits=446/49000000 speed=2.65MT/s 254s * #variants=69595 #multi_allelic=0 #not_processed=0 #hits=460/50000000 speed=2.59MT/s 255s * #variants=70918 #multi_allelic=0 #not_processed=0 #hits=481/51000000 speed=2.59MT/s 255s * #variants=72211 #multi_allelic=0 #not_processed=0 #hits=492/52000000 speed=2.61MT/s 255s * #variants=73449 #multi_allelic=0 #not_processed=0 #hits=492/53000000 speed=2.64MT/s 256s * #variants=74662 #multi_allelic=0 #not_processed=0 #hits=500/54000000 speed=2.67MT/s 256s * #variants=75863 #multi_allelic=0 #not_processed=0 #hits=506/55000000 speed=2.68MT/s 256s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=513/56000000 speed=2.68MT/s 257s * #variants=78253 #multi_allelic=0 #not_processed=0 #hits=515/57000000 speed=2.70MT/s 257s * #variants=79446 #multi_allelic=0 #not_processed=0 #hits=530/58000000 speed=2.70MT/s 258s * #variants=80634 #multi_allelic=0 #not_processed=0 #hits=581/59000000 speed=2.69MT/s 258s * #variants=81817 #multi_allelic=0 #not_processed=0 #hits=594/60000000 speed=2.69MT/s 258s * #variants=82993 #multi_allelic=0 #not_processed=0 #hits=598/61000000 speed=2.72MT/s 259s * #variants=84160 #multi_allelic=0 #not_processed=0 #hits=599/62000000 speed=2.72MT/s 259s * #variants=85304 #multi_allelic=0 #not_processed=0 #hits=609/63000000 speed=2.76MT/s 259s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=609/63157827 speed=2.77MT/s 259s 259s Running time: 24 seconds 259s autopkgtest [08:01:34]: test run-sample-analysis: -----------------------] 264s run-sample-analysis PASS 264s autopkgtest [08:01:39]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 268s autopkgtest [08:01:43]: @@@@@@@@@@@@@@@@@@@@ summary 268s run-sample-analysis PASS