0s autopkgtest [23:07:51]: starting date and time: 2026-02-09 23:07:51+0000 0s autopkgtest [23:07:51]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [23:07:51]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z6hjtfa1/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade qcumber --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- lxd -r lxd-armhf-10.145.243.160 lxd-armhf-10.145.243.160:autopkgtest/ubuntu/resolute/armhf 25s autopkgtest [23:08:16]: testbed dpkg architecture: armhf 27s autopkgtest [23:08:18]: testbed apt version: 3.1.15 31s autopkgtest [23:08:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [23:08:24]: testbed release detected to be: None 41s autopkgtest [23:08:32]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 44s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 44s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 44s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 45s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 45s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 48s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 48s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [246 kB] 49s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1405 kB] 51s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7452 B] 51s Get:11 http://ftpmaster.internal/ubuntu resolute/restricted Sources [15.1 kB] 51s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 54s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 85s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 87s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.3 MB] 113s Fetched 43.5 MB in 1min 10s (624 kB/s) 114s Reading package lists... 120s autopkgtest [23:09:51]: upgrading testbed (apt dist-upgrade and autopurge) 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 123s The following packages will be upgraded: 123s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 123s libip6tc2 libxtables12 wget 123s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Need to get 2407 kB of archives. 123s After this operation, 152 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf iptables armhf 1.8.11-2ubuntu3 [345 kB] 124s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libip4tc2 armhf 1.8.11-2ubuntu3 [22.0 kB] 124s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libip6tc2 armhf 1.8.11-2ubuntu3 [22.3 kB] 124s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libxtables12 armhf 1.8.11-2ubuntu3 [33.5 kB] 124s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf iproute2 armhf 6.18.0-1ubuntu1 [1123 kB] 125s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libcryptsetup12 armhf 2:2.8.0-1ubuntu3 [254 kB] 126s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf wget armhf 1.25.0-2ubuntu4 [327 kB] 126s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cryptsetup-bin armhf 2:2.8.0-1ubuntu3 [232 kB] 126s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf dracut-install armhf 109-11ubuntu1 [47.9 kB] 127s Preconfiguring packages ... 127s Fetched 2407 kB in 4s (676 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68683 files and directories currently installed.) 127s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_armhf.deb ... 127s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_armhf.deb ... 127s Unpacking libip4tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_armhf.deb ... 127s Unpacking libip6tc2:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_armhf.deb ... 127s Unpacking libxtables12:armhf (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_armhf.deb ... 128s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 128s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_armhf.deb ... 128s Unpacking libcryptsetup12:armhf (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 128s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_armhf.deb ... 128s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 128s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_armhf.deb ... 128s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 128s Preparing to unpack .../8-dracut-install_109-11ubuntu1_armhf.deb ... 128s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 128s Setting up libip4tc2:armhf (1.8.11-2ubuntu3) ... 128s Setting up wget (1.25.0-2ubuntu4) ... 128s Setting up libip6tc2:armhf (1.8.11-2ubuntu3) ... 128s Setting up libxtables12:armhf (1.8.11-2ubuntu3) ... 128s Setting up dracut-install (109-11ubuntu1) ... 128s Setting up libcryptsetup12:armhf (2:2.8.0-1ubuntu3) ... 128s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 128s Setting up iptables (1.8.11-2ubuntu3) ... 128s Setting up iproute2 (6.18.0-1ubuntu1) ... 128s Processing triggers for man-db (2.13.1-1build1) ... 129s Processing triggers for install-info (7.2-5) ... 130s Processing triggers for libc-bin (2.42-2ubuntu4) ... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Solving dependencies... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [23:10:06]: rebooting testbed after setup commands that affected boot 176s autopkgtest [23:10:47]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 201s autopkgtest [23:11:12]: @@@@@@@@@@@@@@@@@@@@ apt-source qcumber 212s Get:1 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (dsc) [1784 B] 212s Get:2 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (tar) [262 kB] 212s Get:3 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (diff) [130 kB] 212s gpgv: Signature made Thu Nov 20 17:33:23 2025 UTC 212s gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 212s gpgv: Can't check signature: No public key 212s dpkg-source: warning: cannot verify inline signature for ./qcumber_2.3.0-3.dsc: no acceptable signature found 212s autopkgtest [23:11:23]: testing package qcumber version 2.3.0-3 214s autopkgtest [23:11:25]: build not needed 216s autopkgtest [23:11:27]: test run-unit-test: preparing testbed 218s Reading package lists... 219s Building dependency tree... 219s Reading state information... 219s Solving dependencies... 219s The following NEW packages will be installed: 219s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 219s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common dwgsim 219s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 219s fonts-glyphicons-halflings fonts-urw-base35 git git-man libblas3 libcairo2 219s libdatrie1 libdeflate0 liberror-perl libfontconfig1 libfontenc1 libfreetype6 219s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 219s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery liblapack3 liblcms2-2 219s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 219s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 219s python3-biopython python3-cairo python3-charset-normalizer 219s python3-configargparse python3-connection-pool python3-datrie 219s python3-decorator python3-docutils python3-dpath python3-fastjsonschema 219s python3-freetype python3-git python3-gitdb python3-humanfriendly 219s python3-jupyter-core python3-nbformat python3-numpy python3-numpy-dev 219s python3-pandas python3-pandas-lib python3-pil python3-plac 219s python3-platformdirs python3-psutil python3-pulp python3-pytz 219s python3-reportlab python3-retry python3-rlpycairo python3-roman-numerals 219s python3-smart-open python3-smmap python3-stopit python3-tabulate 219s python3-throttler python3-toposort python3-traitlets python3-wrapt 219s python3-yte sgml-base snakemake w3c-sgml-lib x11-common xfonts-encodings 219s xfonts-utils xml-core 220s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 220s Need to get 50.5 MB of archives. 220s After this operation, 194 MB of additional disk space will be used. 220s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 220s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 220s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 221s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 223s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 229s Get:6 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcoinutils3v5 armhf 2.11.12+ds-1 [424 kB] 229s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libosi1v5 armhf 0.108.11+ds-1 [291 kB] 230s Get:8 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libclp1 armhf 1.17.10+ds-1build1 [789 kB] 231s Get:9 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcgl1 armhf 0.60.9+ds-1build1 [385 kB] 232s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-libcbc3.1 armhf 2.10.12+ds-1build1 [665 kB] 233s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1build1 [11.2 kB] 233s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19build1 [20.3 kB] 233s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf docutils-common all 0.22.4+dfsg-1 [130 kB] 233s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf dwgsim armhf 0.1.14-4build1 [43.6 kB] 233s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 234s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 235s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build2 [11.7 kB] 235s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 235s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 235s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 236s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7build1 [91.0 kB] 236s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8build1 [10.9 MB] 249s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 250s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-extra all 2.37-8build1 [1944 kB] 252s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 252s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf liberror-perl all 0.17030-1 [23.5 kB] 252s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf git-man all 1:2.51.0-1ubuntu1 [1179 kB] 253s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf git armhf 1:2.51.0-1ubuntu1 [4649 kB] 260s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 260s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 260s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 260s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 260s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 260s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 261s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 261s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2build1 [38.8 kB] 261s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 261s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 261s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 262s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 262s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu3 [129 kB] 263s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 263s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 263s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 263s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 263s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 264s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.4-1 [12.7 kB] 264s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 264s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 264s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 264s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 264s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1build1 [11.7 kB] 264s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1build1 [22.4 kB] 264s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.4-2 [167 kB] 264s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 265s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 265s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 265s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 265s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 265s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.9-1 [1149 kB] 267s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3build1 [278 kB] 267s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.86+dfsg-1 [1652 kB] 270s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-configargparse all 1.7-2 [31.7 kB] 270s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-connection-pool all 0.0.3-2build1 [5792 B] 270s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datrie armhf 0.8.3-2 [195 kB] 270s Get:66 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 270s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf python3-roman-numerals all 4.1.0-1 [8660 B] 270s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf python3-docutils all 0.22.4+dfsg-1 [439 kB] 271s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dpath all 2.2.0-2 [20.3 kB] 271s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 271s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smmap all 6.0.0-1build1 [20.7 kB] 271s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gitdb all 4.0.12-1 [46.4 kB] 272s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-git all 3.1.46-1 [149 kB] 272s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanfriendly all 10.0-6build1 [70.9 kB] 272s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 272s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 272s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.9.1-1 [28.9 kB] 272s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.10.4-1 [39.2 kB] 272s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 272s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 283s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 287s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plac all 1.4.3-2 [63.2 kB] 287s Get:83 http://ftpmaster.internal/ubuntu resolute/main armhf python3-psutil armhf 7.1.0-1ubuntu1 [189 kB] 287s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf coinor-cbc armhf 2.10.12+ds-1build1 [14.3 kB] 288s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 288s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-retry all 0.9.2-5 [6160 B] 288s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf python3-wrapt armhf 1.17.3-3 [38.2 kB] 288s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-smart-open all 7.5.0-1 [56.9 kB] 288s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-stopit all 1.1.2-4 [12.9 kB] 288s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tabulate all 0.9.0-1build1 [45.4 kB] 288s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-throttler all 1.2.2-4ubuntu1 [7758 B] 288s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-toposort all 1.10-2build1 [6454 B] 288s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-yte all 1.5.4-1build1 [12.2 kB] 288s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf snakemake all 7.32.4-8.1 [275 kB] 289s Fetched 50.5 MB in 1min 9s (729 kB/s) 289s Selecting previously unselected package python3-numpy-dev:armhf. 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68686 files and directories currently installed.) 289s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 289s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 289s Selecting previously unselected package libblas3:armhf. 289s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 289s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 289s Selecting previously unselected package libgfortran5:armhf. 289s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 289s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 290s Selecting previously unselected package liblapack3:armhf. 290s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 290s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 290s Selecting previously unselected package python3-numpy. 290s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 290s Unpacking python3-numpy (1:2.3.5+ds-3) ... 290s Selecting previously unselected package coinor-libcoinutils3v5:armhf. 290s Preparing to unpack .../05-coinor-libcoinutils3v5_2.11.12+ds-1_armhf.deb ... 290s Unpacking coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 290s Selecting previously unselected package coinor-libosi1v5:armhf. 290s Preparing to unpack .../06-coinor-libosi1v5_0.108.11+ds-1_armhf.deb ... 290s Unpacking coinor-libosi1v5:armhf (0.108.11+ds-1) ... 290s Selecting previously unselected package coinor-libclp1:armhf. 290s Preparing to unpack .../07-coinor-libclp1_1.17.10+ds-1build1_armhf.deb ... 290s Unpacking coinor-libclp1:armhf (1.17.10+ds-1build1) ... 290s Selecting previously unselected package coinor-libcgl1:armhf. 290s Preparing to unpack .../08-coinor-libcgl1_0.60.9+ds-1build1_armhf.deb ... 290s Unpacking coinor-libcgl1:armhf (0.60.9+ds-1build1) ... 290s Selecting previously unselected package coinor-libcbc3.1:armhf. 290s Preparing to unpack .../09-coinor-libcbc3.1_2.10.12+ds-1build1_armhf.deb ... 290s Unpacking coinor-libcbc3.1:armhf (2.10.12+ds-1build1) ... 290s Selecting previously unselected package sgml-base. 290s Preparing to unpack .../10-sgml-base_1.31+nmu1build1_all.deb ... 290s Unpacking sgml-base (1.31+nmu1build1) ... 290s Selecting previously unselected package xml-core. 290s Preparing to unpack .../11-xml-core_0.19build1_all.deb ... 290s Unpacking xml-core (0.19build1) ... 290s Selecting previously unselected package docutils-common. 290s Preparing to unpack .../12-docutils-common_0.22.4+dfsg-1_all.deb ... 290s Unpacking docutils-common (0.22.4+dfsg-1) ... 290s Selecting previously unselected package dwgsim. 290s Preparing to unpack .../13-dwgsim_0.1.14-4build1_armhf.deb ... 290s Unpacking dwgsim (0.1.14-4build1) ... 290s Selecting previously unselected package fonts-dejavu-mono. 290s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8build1_all.deb ... 290s Unpacking fonts-dejavu-mono (2.37-8build1) ... 290s Selecting previously unselected package fonts-dejavu-core. 290s Preparing to unpack .../15-fonts-dejavu-core_2.37-8build1_all.deb ... 291s Unpacking fonts-dejavu-core (2.37-8build1) ... 291s Selecting previously unselected package libfontenc1:armhf. 291s Preparing to unpack .../16-libfontenc1_1%3a1.1.8-1build2_armhf.deb ... 291s Unpacking libfontenc1:armhf (1:1.1.8-1build2) ... 291s Selecting previously unselected package libfreetype6:armhf. 291s Preparing to unpack .../17-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 291s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 291s Selecting previously unselected package x11-common. 291s Preparing to unpack .../18-x11-common_1%3a7.7+24ubuntu1_all.deb ... 291s Unpacking x11-common (1:7.7+24ubuntu1) ... 291s Selecting previously unselected package xfonts-encodings. 291s Preparing to unpack .../19-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 291s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 291s Selecting previously unselected package xfonts-utils. 291s Preparing to unpack .../20-xfonts-utils_1%3a7.7+7build1_armhf.deb ... 291s Unpacking xfonts-utils (1:7.7+7build1) ... 291s Selecting previously unselected package fonts-urw-base35. 291s Preparing to unpack .../21-fonts-urw-base35_20200910-8build1_all.deb ... 291s Unpacking fonts-urw-base35 (20200910-8build1) ... 291s Selecting previously unselected package fontconfig-config. 291s Preparing to unpack .../22-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 292s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 292s Selecting previously unselected package fonts-dejavu-extra. 292s Preparing to unpack .../23-fonts-dejavu-extra_2.37-8build1_all.deb ... 292s Unpacking fonts-dejavu-extra (2.37-8build1) ... 292s Selecting previously unselected package fonts-glyphicons-halflings. 292s Preparing to unpack .../24-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 292s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 292s Selecting previously unselected package liberror-perl. 292s Preparing to unpack .../25-liberror-perl_0.17030-1_all.deb ... 292s Unpacking liberror-perl (0.17030-1) ... 292s Selecting previously unselected package git-man. 292s Preparing to unpack .../26-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 292s Unpacking git-man (1:2.51.0-1ubuntu1) ... 292s Selecting previously unselected package git. 292s Preparing to unpack .../27-git_1%3a2.51.0-1ubuntu1_armhf.deb ... 292s Unpacking git (1:2.51.0-1ubuntu1) ... 292s Selecting previously unselected package libfontconfig1:armhf. 292s Preparing to unpack .../28-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 292s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 292s Selecting previously unselected package libpixman-1-0:armhf. 292s Preparing to unpack .../29-libpixman-1-0_0.46.4-1_armhf.deb ... 292s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 292s Selecting previously unselected package libxcb-render0:armhf. 292s Preparing to unpack .../30-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 292s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 292s Selecting previously unselected package libxcb-shm0:armhf. 292s Preparing to unpack .../31-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 292s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 292s Selecting previously unselected package libxrender1:armhf. 292s Preparing to unpack .../32-libxrender1_1%3a0.9.12-1_armhf.deb ... 292s Unpacking libxrender1:armhf (1:0.9.12-1) ... 292s Selecting previously unselected package libcairo2:armhf. 292s Preparing to unpack .../33-libcairo2_1.18.4-3_armhf.deb ... 292s Unpacking libcairo2:armhf (1.18.4-3) ... 292s Selecting previously unselected package libdatrie1:armhf. 292s Preparing to unpack .../34-libdatrie1_0.2.14-1_armhf.deb ... 292s Unpacking libdatrie1:armhf (0.2.14-1) ... 292s Selecting previously unselected package libdeflate0:armhf. 292s Preparing to unpack .../35-libdeflate0_1.23-2build1_armhf.deb ... 292s Unpacking libdeflate0:armhf (1.23-2build1) ... 292s Selecting previously unselected package libgomp1:armhf. 292s Preparing to unpack .../36-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 292s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 292s Selecting previously unselected package libgraphite2-3:armhf. 293s Preparing to unpack .../37-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 293s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 293s Selecting previously unselected package libharfbuzz0b:armhf. 293s Preparing to unpack .../38-libharfbuzz0b_12.3.2-1_armhf.deb ... 293s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 293s Selecting previously unselected package libimagequant0:armhf. 293s Preparing to unpack .../39-libimagequant0_2.18.0-1build1_armhf.deb ... 293s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 293s Selecting previously unselected package libjpeg-turbo8:armhf. 293s Preparing to unpack .../40-libjpeg-turbo8_2.1.5-4ubuntu3_armhf.deb ... 293s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 293s Selecting previously unselected package libjpeg8:armhf. 293s Preparing to unpack .../41-libjpeg8_8c-2ubuntu11_armhf.deb ... 293s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 293s Selecting previously unselected package libjs-bootstrap. 293s Preparing to unpack .../42-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 293s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 293s Selecting previously unselected package libjs-jquery. 293s Preparing to unpack .../43-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 293s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 293s Selecting previously unselected package liblcms2-2:armhf. 293s Preparing to unpack .../44-liblcms2-2_2.17-1_armhf.deb ... 293s Unpacking liblcms2-2:armhf (2.17-1) ... 293s Selecting previously unselected package liblerc4:armhf. 293s Preparing to unpack .../45-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 293s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 293s Selecting previously unselected package libraqm0:armhf. 293s Preparing to unpack .../46-libraqm0_0.10.4-1_armhf.deb ... 293s Unpacking libraqm0:armhf (0.10.4-1) ... 293s Selecting previously unselected package libsharpyuv0:armhf. 293s Preparing to unpack .../47-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 293s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 293s Selecting previously unselected package libjbig0:armhf. 293s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 293s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 293s Selecting previously unselected package libwebp7:armhf. 293s Preparing to unpack .../49-libwebp7_1.5.0-0.1build1_armhf.deb ... 293s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 293s Selecting previously unselected package libtiff6:armhf. 293s Preparing to unpack .../50-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 293s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 293s Selecting previously unselected package libwebpdemux2:armhf. 293s Preparing to unpack .../51-libwebpdemux2_1.5.0-0.1build1_armhf.deb ... 293s Unpacking libwebpdemux2:armhf (1.5.0-0.1build1) ... 293s Selecting previously unselected package libwebpmux3:armhf. 293s Preparing to unpack .../52-libwebpmux3_1.5.0-0.1build1_armhf.deb ... 293s Unpacking libwebpmux3:armhf (1.5.0-0.1build1) ... 293s Selecting previously unselected package python3-charset-normalizer. 293s Preparing to unpack .../53-python3-charset-normalizer_3.4.4-2_armhf.deb ... 293s Unpacking python3-charset-normalizer (3.4.4-2) ... 293s Selecting previously unselected package libopenjp2-7:armhf. 293s Preparing to unpack .../54-libopenjp2-7_2.5.4-1_armhf.deb ... 293s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 293s Selecting previously unselected package python3-pil:armhf. 293s Preparing to unpack .../55-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 293s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 293s Selecting previously unselected package python3-cairo. 293s Preparing to unpack .../56-python3-cairo_1.27.0-2build1_armhf.deb ... 293s Unpacking python3-cairo (1.27.0-2build1) ... 293s Selecting previously unselected package python3-freetype. 293s Preparing to unpack .../57-python3-freetype_2.5.1-2_all.deb ... 293s Unpacking python3-freetype (2.5.1-2) ... 293s Selecting previously unselected package python3-rlpycairo. 293s Preparing to unpack .../58-python3-rlpycairo_0.3.0-4_all.deb ... 293s Unpacking python3-rlpycairo (0.3.0-4) ... 293s Selecting previously unselected package python3-reportlab. 293s Preparing to unpack .../59-python3-reportlab_4.4.9-1_all.deb ... 293s Unpacking python3-reportlab (4.4.9-1) ... 293s Selecting previously unselected package w3c-sgml-lib. 294s Preparing to unpack .../60-w3c-sgml-lib_1.3-3build1_all.deb ... 294s Unpacking w3c-sgml-lib (1.3-3build1) ... 294s Selecting previously unselected package python3-biopython. 294s Preparing to unpack .../61-python3-biopython_1.86+dfsg-1_armhf.deb ... 294s Unpacking python3-biopython (1.86+dfsg-1) ... 294s Selecting previously unselected package python3-configargparse. 294s Preparing to unpack .../62-python3-configargparse_1.7-2_all.deb ... 294s Unpacking python3-configargparse (1.7-2) ... 294s Selecting previously unselected package python3-connection-pool. 294s Preparing to unpack .../63-python3-connection-pool_0.0.3-2build1_all.deb ... 294s Unpacking python3-connection-pool (0.0.3-2build1) ... 294s Selecting previously unselected package python3-datrie. 294s Preparing to unpack .../64-python3-datrie_0.8.3-2_armhf.deb ... 294s Unpacking python3-datrie (0.8.3-2) ... 294s Selecting previously unselected package python3-decorator. 294s Preparing to unpack .../65-python3-decorator_5.2.1-2_all.deb ... 294s Unpacking python3-decorator (5.2.1-2) ... 294s Selecting previously unselected package python3-roman-numerals. 294s Preparing to unpack .../66-python3-roman-numerals_4.1.0-1_all.deb ... 294s Unpacking python3-roman-numerals (4.1.0-1) ... 294s Selecting previously unselected package python3-docutils. 294s Preparing to unpack .../67-python3-docutils_0.22.4+dfsg-1_all.deb ... 294s Unpacking python3-docutils (0.22.4+dfsg-1) ... 294s Selecting previously unselected package python3-dpath. 294s Preparing to unpack .../68-python3-dpath_2.2.0-2_all.deb ... 294s Unpacking python3-dpath (2.2.0-2) ... 294s Selecting previously unselected package python3-fastjsonschema. 294s Preparing to unpack .../69-python3-fastjsonschema_2.21.1-1_all.deb ... 294s Unpacking python3-fastjsonschema (2.21.1-1) ... 294s Selecting previously unselected package python3-smmap. 294s Preparing to unpack .../70-python3-smmap_6.0.0-1build1_all.deb ... 294s Unpacking python3-smmap (6.0.0-1build1) ... 294s Selecting previously unselected package python3-gitdb. 294s Preparing to unpack .../71-python3-gitdb_4.0.12-1_all.deb ... 294s Unpacking python3-gitdb (4.0.12-1) ... 294s Selecting previously unselected package python3-git. 294s Preparing to unpack .../72-python3-git_3.1.46-1_all.deb ... 294s Unpacking python3-git (3.1.46-1) ... 294s Selecting previously unselected package python3-humanfriendly. 294s Preparing to unpack .../73-python3-humanfriendly_10.0-6build1_all.deb ... 294s Unpacking python3-humanfriendly (10.0-6build1) ... 294s Selecting previously unselected package python3-platformdirs. 294s Preparing to unpack .../74-python3-platformdirs_4.5.1-1_all.deb ... 294s Unpacking python3-platformdirs (4.5.1-1) ... 294s Selecting previously unselected package python3-traitlets. 294s Preparing to unpack .../75-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 294s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 294s Selecting previously unselected package python3-jupyter-core. 294s Preparing to unpack .../76-python3-jupyter-core_5.9.1-1_all.deb ... 294s Unpacking python3-jupyter-core (5.9.1-1) ... 294s Selecting previously unselected package python3-nbformat. 294s Preparing to unpack .../77-python3-nbformat_5.10.4-1_all.deb ... 294s Unpacking python3-nbformat (5.10.4-1) ... 294s Selecting previously unselected package python3-pytz. 294s Preparing to unpack .../78-python3-pytz_2025.2-5_all.deb ... 294s Unpacking python3-pytz (2025.2-5) ... 294s Selecting previously unselected package python3-pandas-lib:armhf. 294s Preparing to unpack .../79-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 294s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 295s Selecting previously unselected package python3-pandas. 295s Preparing to unpack .../80-python3-pandas_2.3.3+dfsg-3_all.deb ... 295s Unpacking python3-pandas (2.3.3+dfsg-3) ... 295s Selecting previously unselected package python3-plac. 295s Preparing to unpack .../81-python3-plac_1.4.3-2_all.deb ... 295s Unpacking python3-plac (1.4.3-2) ... 295s Selecting previously unselected package python3-psutil. 295s Preparing to unpack .../82-python3-psutil_7.1.0-1ubuntu1_armhf.deb ... 295s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 295s Selecting previously unselected package coinor-cbc. 295s Preparing to unpack .../83-coinor-cbc_2.10.12+ds-1build1_armhf.deb ... 295s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 295s Selecting previously unselected package python3-pulp. 295s Preparing to unpack .../84-python3-pulp_2.7.0+dfsg-4_all.deb ... 295s Unpacking python3-pulp (2.7.0+dfsg-4) ... 295s Selecting previously unselected package python3-retry. 295s Preparing to unpack .../85-python3-retry_0.9.2-5_all.deb ... 295s Unpacking python3-retry (0.9.2-5) ... 295s Selecting previously unselected package python3-wrapt. 295s Preparing to unpack .../86-python3-wrapt_1.17.3-3_armhf.deb ... 295s Unpacking python3-wrapt (1.17.3-3) ... 295s Selecting previously unselected package python3-smart-open. 295s Preparing to unpack .../87-python3-smart-open_7.5.0-1_all.deb ... 295s Unpacking python3-smart-open (7.5.0-1) ... 295s Selecting previously unselected package python3-stopit. 295s Preparing to unpack .../88-python3-stopit_1.1.2-4_all.deb ... 295s Unpacking python3-stopit (1.1.2-4) ... 295s Selecting previously unselected package python3-tabulate. 295s Preparing to unpack .../89-python3-tabulate_0.9.0-1build1_all.deb ... 295s Unpacking python3-tabulate (0.9.0-1build1) ... 295s Selecting previously unselected package python3-throttler. 295s Preparing to unpack .../90-python3-throttler_1.2.2-4ubuntu1_all.deb ... 295s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 295s Selecting previously unselected package python3-toposort. 295s Preparing to unpack .../91-python3-toposort_1.10-2build1_all.deb ... 295s Unpacking python3-toposort (1.10-2build1) ... 296s Selecting previously unselected package python3-yte. 296s Preparing to unpack .../92-python3-yte_1.5.4-1build1_all.deb ... 296s Unpacking python3-yte (1.5.4-1build1) ... 296s Selecting previously unselected package snakemake. 296s Preparing to unpack .../93-snakemake_7.32.4-8.1_all.deb ... 296s Unpacking snakemake (7.32.4-8.1) ... 296s Setting up python3-toposort (1.10-2build1) ... 296s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 296s Setting up python3-configargparse (1.7-2) ... 296s Setting up liblcms2-2:armhf (2.17-1) ... 296s Setting up libpixman-1-0:armhf (0.46.4-1) ... 296s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 296s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 296s Setting up libxrender1:armhf (1:0.9.12-1) ... 296s Setting up libdatrie1:armhf (0.2.14-1) ... 296s Setting up libxcb-render0:armhf (1.17.0-2ubuntu1) ... 296s Setting up python3-charset-normalizer (3.4.4-2) ... 296s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 296s Setting up x11-common (1:7.7+24ubuntu1) ... 296s Setting up libdeflate0:armhf (1.23-2build1) ... 296s Setting up python3-tabulate (0.9.0-1build1) ... 297s Setting up python3-pytz (2025.2-5) ... 297s Setting up libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 297s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 297s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 297s Setting up python3-plac (1.4.3-2) ... 297s Setting up python3-platformdirs (4.5.1-1) ... 297s Setting up python3-psutil (7.1.0-1ubuntu1) ... 298s Setting up liberror-perl (0.17030-1) ... 298s Setting up python3-decorator (5.2.1-2) ... 298s Setting up libfontenc1:armhf (1:1.1.8-1build2) ... 298s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 298s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 298s Setting up python3-humanfriendly (10.0-6build1) ... 298s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 298s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 298s Setting up python3-dpath (2.2.0-2) ... 298s Setting up python3-connection-pool (0.0.3-2build1) ... 298s Setting up libimagequant0:armhf (2.18.0-1build1) ... 298s Setting up fonts-dejavu-mono (2.37-8build1) ... 298s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 298s Setting up python3-wrapt (1.17.3-3) ... 298s Setting up python3-throttler (1.2.2-4ubuntu1) ... 299s Setting up dwgsim (0.1.14-4build1) ... 299s Setting up fonts-dejavu-core (2.37-8build1) ... 299s Setting up python3-retry (0.9.2-5) ... 299s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu3) ... 299s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 299s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 299s Setting up python3-fastjsonschema (2.21.1-1) ... 299s Setting up fonts-dejavu-extra (2.37-8build1) ... 299s Setting up python3-stopit (1.1.2-4) ... 299s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 299s Setting up python3-roman-numerals (4.1.0-1) ... 299s Setting up libopenjp2-7:armhf (2.5.4-1) ... 299s Setting up git-man (1:2.51.0-1ubuntu1) ... 299s Setting up libharfbuzz0b:armhf (12.3.2-1) ... 299s Setting up sgml-base (1.31+nmu1build1) ... 300s Setting up python3-datrie (0.8.3-2) ... 300s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 300s Setting up libwebpmux3:armhf (1.5.0-0.1build1) ... 300s Setting up python3-smmap (6.0.0-1build1) ... 300s Setting up python3-jupyter-core (5.9.1-1) ... 300s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 300s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 300s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 300s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 300s Setting up python3-smart-open (7.5.0-1) ... 300s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 301s Setting up libwebpdemux2:armhf (1.5.0-0.1build1) ... 301s Setting up python3-nbformat (5.10.4-1) ... 301s Setting up python3-gitdb (4.0.12-1) ... 301s Setting up python3-freetype (2.5.1-2) ... 301s Setting up xfonts-utils (1:7.7+7build1) ... 301s Setting up python3-yte (1.5.4-1build1) ... 302s Setting up coinor-libcoinutils3v5:armhf (2.11.12+ds-1) ... 302s Setting up libraqm0:armhf (0.10.4-1) ... 302s Setting up git (1:2.51.0-1ubuntu1) ... 302s Setting up python3-numpy (1:2.3.5+ds-3) ... 304s Setting up coinor-libosi1v5:armhf (0.108.11+ds-1) ... 304s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 304s Setting up xml-core (0.19build1) ... 304s Setting up libfontconfig1:armhf (2.17.1-3ubuntu1) ... 304s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 304s Setting up fonts-urw-base35 (20200910-8build1) ... 305s Setting up libcairo2:armhf (1.18.4-3) ... 305s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 305s Setting up python3-pandas (2.3.3+dfsg-3) ... 311s Setting up coinor-libclp1:armhf (1.17.10+ds-1build1) ... 311s Setting up python3-git (3.1.46-1) ... 311s Setting up coinor-libcgl1:armhf (0.60.9+ds-1build1) ... 311s Setting up python3-cairo (1.27.0-2build1) ... 311s Setting up python3-rlpycairo (0.3.0-4) ... 311s Setting up coinor-libcbc3.1:armhf (2.10.12+ds-1build1) ... 311s Setting up python3-reportlab (4.4.9-1) ... 312s Setting up coinor-cbc (2.10.12+ds-1build1) ... 312s Setting up python3-pulp (2.7.0+dfsg-4) ... 312s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 312s otherwise be interpreted by the Tcl shell: \ $ " [ 312s Processing triggers for libc-bin (2.42-2ubuntu4) ... 312s Processing triggers for man-db (2.13.1-1build1) ... 313s Processing triggers for sgml-base (1.31+nmu1build1) ... 313s Setting up w3c-sgml-lib (1.3-3build1) ... 343s Setting up docutils-common (0.22.4+dfsg-1) ... 343s Setting up python3-biopython (1.86+dfsg-1) ... 344s Processing triggers for sgml-base (1.31+nmu1build1) ... 344s Setting up python3-docutils (0.22.4+dfsg-1) ... 345s Setting up snakemake (7.32.4-8.1) ... 351s autopkgtest [23:13:42]: test run-unit-test: [----------------------- 354s Running simulators... 354s Prepended http:// to '' 354s http://: Invalid host name. 354s --2026-02-09 23:13:45-- https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz 354s Resolving squid.internal (squid.internal)... 185.125.188.86, 185.125.188.85 354s Connecting to squid.internal (squid.internal)|185.125.188.86|:3128... connected. 355s Proxy request sent, awaiting response... 200 OK 355s Length: 1379902 (1.3M) [application/x-gzip] 355s Saving to: ‘data/GCF_000005845.2_ASM584v2_genomic.fna.gz’ 355s 355s 0K .......... .......... .......... .......... .......... 3% 327K 4s 355s 50K .......... .......... .......... .......... .......... 7% 833K 3s 355s 100K .......... .......... .......... .......... .......... 11% 661K 2s 355s 150K .......... .......... .......... .......... .......... 14% 2.50M 2s 355s 200K .......... .......... .......... .......... .......... 18% 2.45M 1s 355s 250K .......... .......... .......... .......... .......... 22% 1.05M 1s 355s 300K .......... .......... .......... .......... .......... 25% 2.72M 1s 355s 350K .......... .......... .......... .......... .......... 29% 3.27M 1s 355s 400K .......... .......... .......... .......... .......... 33% 4.99M 1s 355s 450K .......... .......... .......... .......... .......... 37% 4.15M 1s 355s 500K .......... .......... .......... .......... .......... 40% 4.59M 1s 355s 550K .......... .......... .......... .......... .......... 44% 3.00M 1s 355s 600K .......... .......... .......... .......... .......... 48% 4.32M 1s 355s 650K .......... .......... .......... .......... .......... 51% 5.13M 0s 355s 700K .......... .......... .......... .......... .......... 55% 4.46M 0s 355s 750K .......... .......... .......... .......... .......... 59% 5.39M 0s 355s 800K .......... .......... .......... .......... .......... 63% 7.27M 0s 355s 850K .......... .......... .......... .......... .......... 66% 6.94M 0s 355s 900K .......... .......... .......... .......... .......... 70% 10.6M 0s 355s 950K .......... .......... .......... .......... .......... 74% 8.71M 0s 355s 1000K .......... .......... .......... .......... .......... 77% 15.1M 0s 355s 1050K .......... .......... .......... .......... .......... 81% 11.2M 0s 355s 1100K .......... .......... .......... .......... .......... 85% 9.50M 0s 355s 1150K .......... .......... .......... .......... .......... 89% 12.7M 0s 355s 1200K .......... .......... .......... .......... .......... 92% 9.32M 0s 355s 1250K .......... .......... .......... .......... .......... 96% 5.26M 0s 355s 1300K .......... .......... .......... .......... ....... 100% 14.5M=0.6s 355s 355s 2026-02-09 23:13:46 (2.37 MB/s) - ‘data/GCF_000005845.2_ASM584v2_genomic.fna.gz’ saved [1379902/1379902] 355s 355s FINISHED --2026-02-09 23:13:46-- 355s Total wall clock time: 1.5s 355s Downloaded: 1 files, 1.3M in 0.6s (2.37 MB/s) 355s [dwgsim_core] NC_000913.3 length: 4641652 355s [dwgsim_core] 1 sequences, total length: 4641652 355s [dwgsim_core] Currently on: 356s 0 [dwgsim_core] 0 [dwgsim_core] 1000 356s [dwgsim_core] Complete! 356s Cleanup simulated data... 357s Command 'QCumber encountered an error' returned non-zero exit status 1. 357s FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpenk74e6v/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272_S1_L001_R1_001.fastq' 357s Running simulators... 357s Cleanup simulated data... 358s Command 'QCumber encountered an error' returned non-zero exit status 1. 358s Running simulators... 359s FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpenk74e6v/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856_S1_L001_R1_001.fastq' 359s [dwgsim_core] NC_000913.3 length: 4641652 359s [dwgsim_core] 1 sequences, total length: 4641652 359s [dwgsim_core] Currently on: 377s 0 [dwgsim_core] 0 [dwgsim_core] 10000 [dwgsim_core] 20000 [dwgsim_core] 30000 [dwgsim_core] 40000 [dwgsim_core] 50000 [dwgsim_core] 60000 [dwgsim_core] 70000 [dwgsim_core] 80000 [dwgsim_core] 90000 [dwgsim_core] 100000 377s [dwgsim_core] Complete! 377s Cleanup simulated data... 378s Command 'QCumber encountered an error' returned non-zero exit status 1. 378s UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte 378s wget -Pdata https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz 378s 378s Run Qcumber: testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 378s ../QCumber-2 -i/tmp/tmpenk74e6v/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 -t2 -K -otestData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 378s 378s Run Qcumber: testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 378s ../QCumber-2 -i/tmp/tmpenk74e6v/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 -t2 -K --trimBetter mapping -otestData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 378s 378s Run Qcumber: testData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c 378s ../QCumber-2 -i/tmp/tmpenk74e6v/testData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c -t4 -K -S -otestData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c -rdata/GCF_000005845.2_ASM584v2_genomic.fna.gz 378s autopkgtest [23:14:09]: test run-unit-test: -----------------------] 382s autopkgtest [23:14:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 382s run-unit-test PASS 386s autopkgtest [23:14:17]: @@@@@@@@@@@@@@@@@@@@ summary 386s run-unit-test PASS