0s autopkgtest [21:35:25]: starting date and time: 2026-02-03 21:35:25+0000 0s autopkgtest [21:35:25]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [21:35:25]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ivmntdgs/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:setuptools --apt-upgrade python-pyani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.1-0.1build1 -- lxd -r lxd-armhf-10.145.243.176 lxd-armhf-10.145.243.176:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [21:35:46]: testbed dpkg architecture: armhf 23s autopkgtest [21:35:48]: testbed apt version: 3.1.14 27s autopkgtest [21:35:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [21:35:54]: testbed release detected to be: None 36s autopkgtest [21:36:01]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 39s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 39s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 39s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 39s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [242 kB] 39s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1343 kB] 39s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 39s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [283 kB] 39s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1070 kB] 39s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [6336 B] 39s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 40s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB] 40s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 40s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1373 kB] 40s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB] 40s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 44s Fetched 43.1 MB in 5s (8013 kB/s) 45s Reading package lists... 51s autopkgtest [21:36:16]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 54s The following packages will be upgraded: 54s powermgmt-base python3-pkg-resources python3-setuptools systemd-hwe-hwdb 54s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 816 kB of archives. 54s After this operation, 1024 B of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf systemd-hwe-hwdb all 259.0.1 [3152 B] 54s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf powermgmt-base all 1.38ubuntu2 [7878 B] 54s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 54s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-setuptools all 78.1.1-0.1build1 [661 kB] 55s Fetched 816 kB in 1s (1175 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68394 files and directories currently installed.) 55s Preparing to unpack .../systemd-hwe-hwdb_259.0.1_all.deb ... 55s Unpacking systemd-hwe-hwdb (259.0.1) over (257.7.1) ... 55s Preparing to unpack .../powermgmt-base_1.38ubuntu2_all.deb ... 55s Unpacking powermgmt-base (1.38ubuntu2) over (1.38ubuntu1) ... 55s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 55s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 56s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 56s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 56s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 56s Setting up powermgmt-base (1.38ubuntu2) ... 56s Setting up python3-setuptools (78.1.1-0.1build1) ... 57s Setting up systemd-hwe-hwdb (259.0.1) ... 58s Processing triggers for udev (259-1ubuntu3) ... 58s Processing triggers for man-db (2.13.1-1) ... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 62s Solving dependencies... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [21:36:29]: rebooting testbed after setup commands that affected boot 105s autopkgtest [21:37:10]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 131s autopkgtest [21:37:36]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyani 144s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (dsc) [1798 B] 144s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (tar) [49.0 MB] 144s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (diff) [11.2 kB] 144s gpgv: Signature made Tue Mar 18 07:26:50 2025 UTC 144s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 144s gpgv: issuer "nilesh@debian.org" 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.13-1.dsc: no acceptable signature found 146s autopkgtest [21:37:51]: testing package python-pyani version 0.2.13-1 148s autopkgtest [21:37:53]: build not needed 155s autopkgtest [21:38:00]: test run-unit-test: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Solving dependencies... 158s The following NEW packages will be installed: 158s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 158s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 158s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 158s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 158s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libopenjp2-7 158s libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 158s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 158s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 158s libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data python-matplotlib-data 158s python3-all python3-biopython python3-brotli python3-cairo 158s python3-charset-normalizer python3-contourpy python3-cycler 158s python3-decorator python3-fonttools python3-freetype python3-iniconfig 158s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 158s python3-mpmath python3-numpy python3-numpy-dev python3-pandas 158s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 158s python3-pyani python3-pytest python3-pytz python3-reportlab 158s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 158s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 158s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 158s xfonts-encodings xfonts-utils xml-core 158s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 126 MB of archives. 158s After this operation, 503 MB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 158s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 159s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 159s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 159s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build2 [11.7 kB] 159s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 159s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 159s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 159s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7build1 [91.0 kB] 159s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8build1 [10.9 MB] 160s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 160s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-extra all 2.37-8build1 [1944 kB] 160s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.5.0~RC2-3 [171 kB] 160s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 160s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 160s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 160s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 160s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 160s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 160s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 160s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 160s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 160s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 160s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 160s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 160s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 160s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 160s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 160s Get:34 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedcrypto16 armhf 3.6.5-0.1ubuntu2 [230 kB] 160s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedx509-7 armhf 3.6.5-0.1ubuntu2 [30.5 kB] 160s Get:36 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedtls21 armhf 3.6.5-0.1ubuntu2 [121 kB] 160s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 160s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 160s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 160s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 160s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 160s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 160s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 160s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 160s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 160s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 160s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 160s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1build1 [11.7 kB] 160s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1build1 [22.4 kB] 160s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 160s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3build1 [91.2 kB] 160s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf mummer armhf 3.23+dfsg-8build1 [677 kB] 160s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 160s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf ncbi-blast+ armhf 2.16.0+ds-7 [14.8 MB] 161s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 161s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 161s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.9-3 [890 B] 161s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.4-2 [167 kB] 161s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.11-1 [104 kB] 161s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.2-1 [105 kB] 161s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tk armhf 3.13.9-3 [11.2 kB] 161s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 12.0.0-1ubuntu1 [9168 B] 161s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 161s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 161s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 161s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 161s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 161s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.9-1 [1149 kB] 161s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 161s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19build1 [20.3 kB] 161s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3build1 [278 kB] 161s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.86+dfsg-1 [1652 kB] 161s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 161s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.3-1 [268 kB] 161s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 161s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 161s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 161s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.5+dfsg-1 [26.1 kB] 161s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.16.3-4 [18.3 MB] 161s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 161s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 162s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 162s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 162s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1build1 [9543 kB] 162s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.61.1-3 [1697 kB] 162s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 162s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 162s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 162s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 162s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 162s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 162s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 162s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-seaborn all 0.13.2-6 [225 kB] 162s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyani armhf 0.2.13-1 [46.7 kB] 162s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 163s Fetched 126 MB in 4s (28.6 MB/s) 163s Selecting previously unselected package python3-numpy-dev:armhf. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 163s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 163s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 163s Selecting previously unselected package libblas3:armhf. 163s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 163s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 163s Selecting previously unselected package libgfortran5:armhf. 163s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 163s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 163s Selecting previously unselected package liblapack3:armhf. 163s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 163s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 163s Selecting previously unselected package python3-numpy. 163s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 163s Unpacking python3-numpy (1:2.3.5+ds-3) ... 164s Selecting previously unselected package libpython3.14-minimal:armhf. 164s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_armhf.deb ... 164s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 164s Selecting previously unselected package python3.14-minimal. 164s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_armhf.deb ... 164s Unpacking python3.14-minimal (3.14.2-1) ... 164s Selecting previously unselected package fonts-dejavu-mono. 164s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8build1) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8build1) ... 164s Selecting previously unselected package libfontenc1:armhf. 164s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build2_armhf.deb ... 164s Unpacking libfontenc1:armhf (1:1.1.8-1build2) ... 164s Selecting previously unselected package libfreetype6:armhf. 164s Preparing to unpack .../10-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 164s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 164s Selecting previously unselected package x11-common. 164s Preparing to unpack .../11-x11-common_1%3a7.7+24ubuntu1_all.deb ... 164s Unpacking x11-common (1:7.7+24ubuntu1) ... 164s Selecting previously unselected package xfonts-encodings. 164s Preparing to unpack .../12-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 164s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 164s Selecting previously unselected package xfonts-utils. 164s Preparing to unpack .../13-xfonts-utils_1%3a7.7+7build1_armhf.deb ... 164s Unpacking xfonts-utils (1:7.7+7build1) ... 164s Selecting previously unselected package fonts-urw-base35. 164s Preparing to unpack .../14-fonts-urw-base35_20200910-8build1_all.deb ... 165s Unpacking fonts-urw-base35 (20200910-8build1) ... 165s Selecting previously unselected package fontconfig-config. 165s Preparing to unpack .../15-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 165s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 165s Selecting previously unselected package fonts-dejavu-extra. 165s Preparing to unpack .../16-fonts-dejavu-extra_2.37-8build1_all.deb ... 165s Unpacking fonts-dejavu-extra (2.37-8build1) ... 165s Selecting previously unselected package fonts-lyx. 165s Preparing to unpack .../17-fonts-lyx_2.5.0~RC2-3_all.deb ... 165s Unpacking fonts-lyx (2.5.0~RC2-3) ... 165s Selecting previously unselected package libfontconfig1:armhf. 165s Preparing to unpack .../18-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 165s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 165s Selecting previously unselected package libpixman-1-0:armhf. 166s Preparing to unpack .../19-libpixman-1-0_0.46.4-1_armhf.deb ... 166s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 166s Selecting previously unselected package libxcb-render0:armhf. 166s Preparing to unpack .../20-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 166s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 166s Selecting previously unselected package libxcb-shm0:armhf. 166s Preparing to unpack .../21-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 166s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 166s Selecting previously unselected package libxrender1:armhf. 166s Preparing to unpack .../22-libxrender1_1%3a0.9.12-1_armhf.deb ... 166s Unpacking libxrender1:armhf (1:0.9.12-1) ... 166s Selecting previously unselected package libcairo2:armhf. 166s Preparing to unpack .../23-libcairo2_1.18.4-3_armhf.deb ... 166s Unpacking libcairo2:armhf (1.18.4-3) ... 166s Selecting previously unselected package libdeflate0:armhf. 166s Preparing to unpack .../24-libdeflate0_1.23-2_armhf.deb ... 166s Unpacking libdeflate0:armhf (1.23-2) ... 166s Selecting previously unselected package libgomp1:armhf. 166s Preparing to unpack .../25-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 166s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 166s Selecting previously unselected package libgraphite2-3:armhf. 166s Preparing to unpack .../26-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 166s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 166s Selecting previously unselected package libharfbuzz0b:armhf. 166s Preparing to unpack .../27-libharfbuzz0b_12.3.2-1_armhf.deb ... 166s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 166s Selecting previously unselected package libimagequant0:armhf. 166s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_armhf.deb ... 166s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 166s Selecting previously unselected package libjpeg-turbo8:armhf. 166s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 166s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 166s Selecting previously unselected package libjpeg8:armhf. 166s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_armhf.deb ... 166s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 166s Selecting previously unselected package liblcms2-2:armhf. 166s Preparing to unpack .../31-liblcms2-2_2.17-1_armhf.deb ... 166s Unpacking liblcms2-2:armhf (2.17-1) ... 166s Selecting previously unselected package liblerc4:armhf. 166s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 166s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 166s Selecting previously unselected package libmbedcrypto16:armhf. 166s Preparing to unpack .../33-libmbedcrypto16_3.6.5-0.1ubuntu2_armhf.deb ... 166s Unpacking libmbedcrypto16:armhf (3.6.5-0.1ubuntu2) ... 166s Selecting previously unselected package libmbedx509-7:armhf. 166s Preparing to unpack .../34-libmbedx509-7_3.6.5-0.1ubuntu2_armhf.deb ... 166s Unpacking libmbedx509-7:armhf (3.6.5-0.1ubuntu2) ... 166s Selecting previously unselected package libmbedtls21:armhf. 166s Preparing to unpack .../35-libmbedtls21_3.6.5-0.1ubuntu2_armhf.deb ... 166s Unpacking libmbedtls21:armhf (3.6.5-0.1ubuntu2) ... 166s Selecting previously unselected package libpython3.14-stdlib:armhf. 166s Preparing to unpack .../36-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 166s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 166s Selecting previously unselected package libqhull-r8.0:armhf. 166s Preparing to unpack .../37-libqhull-r8.0_2020.2-8_armhf.deb ... 166s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 166s Selecting previously unselected package libraqm0:armhf. 166s Preparing to unpack .../38-libraqm0_0.10.3-1_armhf.deb ... 166s Unpacking libraqm0:armhf (0.10.3-1) ... 167s Selecting previously unselected package libsharpyuv0:armhf. 167s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 167s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 167s Selecting previously unselected package libtcl8.6:armhf. 167s Preparing to unpack .../40-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 167s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 167s Selecting previously unselected package libjbig0:armhf. 167s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 167s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 167s Selecting previously unselected package libwebp7:armhf. 167s Preparing to unpack .../42-libwebp7_1.5.0-0.1build1_armhf.deb ... 167s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 167s Selecting previously unselected package libtiff6:armhf. 167s Preparing to unpack .../43-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 167s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 167s Selecting previously unselected package libxft2:armhf. 167s Preparing to unpack .../44-libxft2_2.3.6-1build2_armhf.deb ... 167s Unpacking libxft2:armhf (2.3.6-1build2) ... 167s Selecting previously unselected package libxss1:armhf. 167s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_armhf.deb ... 167s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 167s Selecting previously unselected package libtk8.6:armhf. 167s Preparing to unpack .../46-libtk8.6_8.6.17-1_armhf.deb ... 167s Unpacking libtk8.6:armhf (8.6.17-1) ... 167s Selecting previously unselected package libwebpdemux2:armhf. 167s Preparing to unpack .../47-libwebpdemux2_1.5.0-0.1build1_armhf.deb ... 167s Unpacking libwebpdemux2:armhf (1.5.0-0.1build1) ... 167s Selecting previously unselected package libwebpmux3:armhf. 167s Preparing to unpack .../48-libwebpmux3_1.5.0-0.1build1_armhf.deb ... 167s Unpacking libwebpmux3:armhf (1.5.0-0.1build1) ... 167s Selecting previously unselected package libxslt1.1:armhf. 167s Preparing to unpack .../49-libxslt1.1_1.1.43-0.3_armhf.deb ... 167s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 167s Selecting previously unselected package libzopfli1. 167s Preparing to unpack .../50-libzopfli1_1.0.3-3build1_armhf.deb ... 167s Unpacking libzopfli1 (1.0.3-3build1) ... 167s Selecting previously unselected package mummer. 167s Preparing to unpack .../51-mummer_3.23+dfsg-8build1_armhf.deb ... 167s Unpacking mummer (3.23+dfsg-8build1) ... 167s Selecting previously unselected package ncbi-data. 167s Preparing to unpack .../52-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 167s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 168s Selecting previously unselected package ncbi-blast+. 168s Preparing to unpack .../53-ncbi-blast+_2.16.0+ds-7_armhf.deb ... 168s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 168s Selecting previously unselected package python-matplotlib-data. 168s Preparing to unpack .../54-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 168s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) 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.../60-python3-tk_3.13.9-3_armhf.deb ... 168s Unpacking python3-tk (3.13.9-3) ... 168s Selecting previously unselected package python3-pil.imagetk:armhf. 169s Preparing to unpack .../61-python3-pil.imagetk_12.0.0-1ubuntu1_armhf.deb ... 169s Unpacking python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 169s Selecting previously unselected package libopenjp2-7:armhf. 169s Preparing to unpack .../62-libopenjp2-7_2.5.4-1_armhf.deb ... 169s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 169s Selecting previously unselected package python3-pil:armhf. 169s Preparing to unpack .../63-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 169s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 169s Selecting previously unselected package python3-cairo. 169s Preparing to unpack .../64-python3-cairo_1.27.0-2build1_armhf.deb ... 169s Unpacking python3-cairo (1.27.0-2build1) ... 169s Selecting previously unselected package python3-freetype. 169s Preparing to unpack .../65-python3-freetype_2.5.1-2_all.deb ... 169s Unpacking python3-freetype (2.5.1-2) ... 169s Selecting previously unselected package python3-rlpycairo. 169s Preparing to unpack .../66-python3-rlpycairo_0.3.0-4_all.deb ... 169s Unpacking python3-rlpycairo (0.3.0-4) ... 169s Selecting previously unselected package python3-reportlab. 169s Preparing to unpack .../67-python3-reportlab_4.4.9-1_all.deb ... 169s Unpacking python3-reportlab (4.4.9-1) ... 169s Selecting previously unselected package sgml-base. 169s Preparing to unpack .../68-sgml-base_1.31+nmu1_all.deb ... 169s Unpacking sgml-base (1.31+nmu1) ... 169s Selecting previously unselected package xml-core. 169s Preparing to unpack .../69-xml-core_0.19build1_all.deb ... 169s Unpacking xml-core (0.19build1) ... 169s Selecting previously unselected package w3c-sgml-lib. 169s Preparing to unpack .../70-w3c-sgml-lib_1.3-3build1_all.deb ... 169s Unpacking w3c-sgml-lib (1.3-3build1) ... 169s Selecting previously unselected package python3-biopython. 169s Preparing to unpack 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python3-matplotlib (3.10.7+dfsg1-1) ... 173s Selecting previously unselected package python3-pytz. 173s Preparing to unpack .../88-python3-pytz_2025.2-5_all.deb ... 173s Unpacking python3-pytz (2025.2-5) ... 173s Selecting previously unselected package python3-pandas-lib:armhf. 173s Preparing to unpack .../89-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 173s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 173s Selecting previously unselected package python3-pandas. 173s Preparing to unpack .../90-python3-pandas_2.3.3+dfsg-3_all.deb ... 173s Unpacking python3-pandas (2.3.3+dfsg-3) ... 174s Selecting previously unselected package python3-pluggy. 174s Preparing to unpack .../91-python3-pluggy_1.6.0-2_all.deb ... 174s Unpacking python3-pluggy (1.6.0-2) ... 174s Selecting previously unselected package python3-seaborn. 174s Preparing to unpack .../92-python3-seaborn_0.13.2-6_all.deb ... 174s Unpacking python3-seaborn (0.13.2-6) ... 174s Selecting previously unselected package python3-pyani. 174s Preparing to unpack .../93-python3-pyani_0.2.13-1_armhf.deb ... 174s Unpacking python3-pyani (0.2.13-1) ... 174s Selecting previously unselected package python3-pytest. 174s Preparing to unpack .../94-python3-pytest_9.0.2-2_all.deb ... 174s Unpacking python3-pytest (9.0.2-2) ... 174s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 174s Setting up liblcms2-2:armhf (2.17-1) ... 174s Setting up python3-iniconfig (2.1.0-2) ... 174s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 174s Setting up libpixman-1-0:armhf (0.46.4-1) ... 174s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 174s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 174s Setting up libxrender1:armhf (1:0.9.12-1) ... 174s Setting up python3-lz4 (4.4.5+dfsg-1) ... 174s Setting up libxcb-render0:armhf (1.17.0-2ubuntu1) ... 174s Setting up python3-charset-normalizer (3.4.4-2) ... 175s Setting up fonts-lyx (2.5.0~RC2-3) ... 175s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 175s Setting up x11-common (1:7.7+24ubuntu1) ... 175s Setting up libdeflate0:armhf (1.23-2) ... 175s Setting up libqhull-r8.0:armhf (2020.2-8) ... 175s Setting up python3-pytz (2025.2-5) ... 175s Setting up libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 175s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 175s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 175s Setting up unicode-data (16.0.0-1build1) ... 175s Setting up python3-decorator (5.2.1-2) ... 176s Setting up libfontenc1:armhf (1:1.1.8-1build2) ... 176s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 176s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 176s Setting up libzopfli1 (1.0.3-3build1) ... 176s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 176s Setting up python3-brotli (1.1.0-2build6) ... 176s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 176s Setting up python3-cycler (0.12.1-2) ... 176s Setting up libimagequant0:armhf (2.18.0-1build1) ... 176s Setting up fonts-dejavu-mono (2.37-8build1) ... 176s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 176s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 176s Setting up libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 176s Setting up fonts-dejavu-core (2.37-8build1) ... 176s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 176s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 176s Setting up python3-pluggy (1.6.0-2) ... 177s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 177s Setting up fonts-dejavu-extra (2.37-8build1) ... 177s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 177s Setting up mummer (3.23+dfsg-8build1) ... 177s Setting up libopenjp2-7:armhf (2.5.4-1) ... 177s Setting up libharfbuzz0b:armhf (12.3.2-1) ... 177s Setting up sgml-base (1.31+nmu1) ... 177s Setting up libxss1:armhf (1:1.2.3-1build4) ... 177s Setting up libmbedcrypto16:armhf (3.6.5-0.1ubuntu2) ... 177s Setting up python3-mpmath (1.3.0-2) ... 178s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 178s Setting up libwebpmux3:armhf (1.5.0-0.1build1) ... 178s Setting up python3.14-minimal (3.14.2-1) ... 179s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 179s Setting up python3-sympy (1.14.0-2) ... 186s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 186s return p.returncode 193s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 193s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 193s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 193s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 194s Setting up python3-pytest (9.0.2-2) ... 195s Setting up libwebpdemux2:armhf (1.5.0-0.1build1) ... 195s Setting up python3-freetype (2.5.1-2) ... 195s Setting up xfonts-utils (1:7.7+7build1) ... 195s Setting up python3-zopfli (0.4.0-1) ... 195s Setting up libmbedx509-7:armhf (3.6.5-0.1ubuntu2) ... 195s Setting up libraqm0:armhf (0.10.3-1) ... 195s Setting up python3-numpy (1:2.3.5+ds-3) ... 200s Setting up libmbedtls21:armhf (3.6.5-0.1ubuntu2) ... 200s Setting up python3-lxml:armhf (6.0.2-1) ... 200s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 200s Setting up xml-core (0.19build1) ... 200s Setting up python3-contourpy (1.3.3-1) ... 201s Setting up libfontconfig1:armhf (2.17.1-3ubuntu1) ... 201s Setting up python3.14 (3.14.2-1) ... 202s Setting up libxft2:armhf (2.3.6-1build2) ... 202s Setting up python3-scipy (1.16.3-4) ... 211s Setting up libtk8.6:armhf (8.6.17-1) ... 211s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 211s Setting up python3-all (3.13.9-3) ... 211s Setting up fonts-urw-base35 (20200910-8build1) ... 212s Setting up libcairo2:armhf (1.18.4-3) ... 212s Setting up python3.13-tk (3.13.11-1) ... 212s Setting up ncbi-blast+ (2.16.0+ds-7) ... 212s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 212s Setting up python3-pandas (2.3.3+dfsg-3) ... 224s Setting up python3.14-tk (3.14.2-1) ... 224s Setting up python3-cairo (1.27.0-2build1) ... 224s Setting up python3-tk (3.13.9-3) ... 224s Setting up python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 225s Setting up python3-rlpycairo (0.3.0-4) ... 225s Setting up python3-reportlab (4.4.9-1) ... 227s Setting up python3-fonttools (4.61.1-3) ... 229s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 229s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 233s Setting up python3-seaborn (0.13.2-6) ... 233s Processing triggers for systemd (259-1ubuntu3) ... 234s Processing triggers for man-db (2.13.1-1) ... 234s Processing triggers for libc-bin (2.42-2ubuntu4) ... 235s Processing triggers for sgml-base (1.31+nmu1) ... 235s Setting up w3c-sgml-lib (1.3-3build1) ... 265s Setting up python3-biopython (1.86+dfsg-1) ... 267s Setting up python3-pyani (0.2.13-1) ... 276s autopkgtest [21:40:01]: test run-unit-test: [----------------------- 279s Testing with python3.14 in /tmp/autopkgtest.qe2999/build.etu/src: 279s ============================= test session starts ============================== 279s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 279s cachedir: .pytest_cache 279s rootdir: /tmp/autopkgtest.qe2999/build.etu/src 279s plugins: typeguard-4.4.4 282s collecting ... collected 56 items 282s 282s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 282s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 284s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 284s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 284s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 284s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 284s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 287s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 288s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 288s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 288s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 288s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 288s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 288s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 288s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 288s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 288s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 303s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 303s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 313s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 330s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 330s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 330s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 330s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 330s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 330s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 330s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 330s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 330s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 331s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 331s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 331s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 332s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 332s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 333s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 333s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 333s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 333s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 333s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 333s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 333s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 333s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 333s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 333s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 333s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 416s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 416s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 416s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 433s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 433s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 441s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 441s 441s =============================== warnings summary =============================== 441s tests/test_anib.py::TestParsing::test_blastdir_processing 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 441s results.alignment_lengths[org][org] = length 441s 441s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 441s results.alignment_lengths[org][org] = length 441s 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 441s data[columns[idx]][row] = 1.0 441s 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 441s data[columns[idx]][row] = float(val) 441s 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_anim_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 441s data[columns[idx]][row] = 100.0 441s 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 441s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 441s 441s tests/test_concordance.py::TestConcordance::test_anib_concordance 441s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 441s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 441s 441s tests/test_concordance.py::TestConcordance::test_tetra_concordance 441s tests/test_tetra.py::TestTETRA::test_correlations 441s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 441s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 441s A typical example is when you are setting values in a column of a DataFrame, like: 441s 441s df["col"][row_indexer] = value 441s 441s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 441s 441s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 441s 442s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 442s 442s tests/test_concordance.py::TestConcordance::test_tetra_concordance 442s tests/test_tetra.py::TestTETRA::test_correlations 442s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 442s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 442s A typical example is when you are setting values in a column of a DataFrame, like: 442s 442s df["col"][row_indexer] = value 442s 442s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 442s 442s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 442s 442s correlations[org2][org1] = correlations[org1][org2] 442s 442s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 442s =========== 46 passed, 10 skipped, 28 warnings in 161.61s (0:02:41) ============ 442s Testing with python3.13 in /tmp/autopkgtest.qe2999/build.etu/src: 442s ============================= test session starts ============================== 442s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 442s cachedir: .pytest_cache 442s rootdir: /tmp/autopkgtest.qe2999/build.etu/src 442s plugins: typeguard-4.4.4 444s collecting ... collected 56 items 444s 444s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 444s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 447s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 447s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 447s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 447s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 447s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 449s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 450s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 450s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 450s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 450s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 450s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 450s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 450s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 450s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 450s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 465s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 465s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 475s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 492s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 492s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 492s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 492s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 492s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 493s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 493s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 493s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 493s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 493s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 493s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 493s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 494s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 495s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 495s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 495s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 495s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 495s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 495s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 495s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 495s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 495s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 495s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 495s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 495s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 581s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 581s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 581s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 599s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 599s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 607s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 607s 607s =============================== warnings summary =============================== 607s tests/test_anib.py::TestParsing::test_blastdir_processing 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 607s results.alignment_lengths[org][org] = length 607s 607s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 607s results.alignment_lengths[org][org] = length 607s 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 607s data[columns[idx]][row] = 1.0 607s 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 607s data[columns[idx]][row] = float(val) 607s 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_anim_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 607s data[columns[idx]][row] = 100.0 607s 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 607s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 607s 607s tests/test_concordance.py::TestConcordance::test_anib_concordance 607s /tmp/autopkgtest.qe2999/build.etu/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 607s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 607s 607s tests/test_concordance.py::TestConcordance::test_tetra_concordance 607s tests/test_tetra.py::TestTETRA::test_correlations 607s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 607s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 607s A typical example is when you are setting values in a column of a DataFrame, like: 607s 607s df["col"][row_indexer] = value 607s 607s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 607s 607s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 607s 608s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 608s 608s tests/test_concordance.py::TestConcordance::test_tetra_concordance 608s tests/test_tetra.py::TestTETRA::test_correlations 608s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 608s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 608s A typical example is when you are setting values in a column of a DataFrame, like: 608s 608s df["col"][row_indexer] = value 608s 608s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 608s 608s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 608s 608s correlations[org2][org1] = correlations[org1][org2] 608s 608s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 608s =========== 46 passed, 10 skipped, 28 warnings in 164.49s (0:02:44) ============ 609s autopkgtest [21:45:34]: test run-unit-test: -----------------------] 613s autopkgtest [21:45:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 613s run-unit-test PASS 616s autopkgtest [21:45:41]: test autodep8-python3: preparing testbed 641s autopkgtest [21:46:06]: testbed dpkg architecture: armhf 642s autopkgtest [21:46:07]: testbed apt version: 3.1.14 646s autopkgtest [21:46:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 648s autopkgtest [21:46:13]: testbed release detected to be: resolute 656s autopkgtest [21:46:21]: updating testbed package index (apt update) 658s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 658s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 658s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 659s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 659s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1343 kB] 659s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 659s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 659s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [242 kB] 660s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [283 kB] 660s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1070 kB] 660s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [6336 B] 660s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 663s Get:13 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 663s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB] 663s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1373 kB] 663s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB] 663s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 666s Fetched 43.1 MB in 8s (5086 kB/s) 667s Reading package lists... 673s autopkgtest [21:46:38]: upgrading testbed (apt dist-upgrade and autopurge) 675s Reading package lists... 675s Building dependency tree... 675s Reading state information... 675s Calculating upgrade... 676s The following packages will be upgraded: 676s powermgmt-base python3-pkg-resources python3-setuptools systemd-hwe-hwdb 676s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 676s Need to get 816 kB of archives. 676s After this operation, 1024 B of additional disk space will be used. 676s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf systemd-hwe-hwdb all 259.0.1 [3152 B] 676s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf powermgmt-base all 1.38ubuntu2 [7878 B] 676s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 677s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-setuptools all 78.1.1-0.1build1 [661 kB] 677s Fetched 816 kB in 1s (1286 kB/s) 677s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68394 files and directories currently installed.) 677s Preparing to unpack .../systemd-hwe-hwdb_259.0.1_all.deb ... 677s Unpacking systemd-hwe-hwdb (259.0.1) over (257.7.1) ... 678s Preparing to unpack .../powermgmt-base_1.38ubuntu2_all.deb ... 678s Unpacking powermgmt-base (1.38ubuntu2) over (1.38ubuntu1) ... 678s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 678s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 678s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 678s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 678s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 678s Setting up powermgmt-base (1.38ubuntu2) ... 678s Setting up python3-setuptools (78.1.1-0.1build1) ... 679s Setting up systemd-hwe-hwdb (259.0.1) ... 680s Processing triggers for udev (259-1ubuntu3) ... 681s Processing triggers for man-db (2.13.1-1) ... 683s Reading package lists... 684s Building dependency tree... 684s Reading state information... 684s Solving dependencies... 684s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 686s autopkgtest [21:46:51]: rebooting testbed after setup commands that affected boot 750s Reading package lists... 751s Building dependency tree... 751s Reading state information... 751s Solving dependencies... 751s The following NEW packages will be installed: 751s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 751s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 751s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 751s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 751s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libopenjp2-7 751s libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 751s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 751s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 751s libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data python-matplotlib-data 752s python3-all python3-biopython python3-brotli python3-cairo 752s python3-charset-normalizer python3-contourpy python3-cycler 752s python3-decorator python3-fonttools python3-freetype python3-kiwisolver 752s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 752s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 752s python3-pil.imagetk python3-pyani python3-pytz python3-reportlab 752s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 752s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 752s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 752s xfonts-encodings xfonts-utils xml-core 752s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 752s Need to get 126 MB of archives. 752s After this operation, 502 MB of additional disk space will be used. 752s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 752s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 752s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 752s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 752s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 752s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 752s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 753s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 753s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 753s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build2 [11.7 kB] 753s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 753s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 753s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 753s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7build1 [91.0 kB] 753s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8build1 [10.9 MB] 753s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.17.1-3ubuntu1 [38.5 kB] 753s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-extra all 2.37-8build1 [1944 kB] 753s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.5.0~RC2-3 [171 kB] 753s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.17.1-3ubuntu1 [117 kB] 753s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 753s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2ubuntu1 [15.5 kB] 753s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2ubuntu1 [5956 B] 753s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 753s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 753s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 753s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 753s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 753s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.2-1 [501 kB] 753s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 753s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 753s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 753s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 753s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 753s Get:34 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedcrypto16 armhf 3.6.5-0.1ubuntu2 [230 kB] 753s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedx509-7 armhf 3.6.5-0.1ubuntu2 [30.5 kB] 753s Get:36 http://ftpmaster.internal/ubuntu resolute/universe armhf libmbedtls21 armhf 3.6.5-0.1ubuntu2 [121 kB] 753s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 753s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 753s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 753s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 753s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1build1 [918 kB] 753s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 753s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 753s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 753s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 753s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 753s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 753s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1build1 [11.7 kB] 753s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1build1 [22.4 kB] 753s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 753s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3build1 [91.2 kB] 753s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf mummer armhf 3.23+dfsg-8build1 [677 kB] 753s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 754s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf ncbi-blast+ armhf 2.16.0+ds-7 [14.8 MB] 754s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 754s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 754s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.9-3 [890 B] 754s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.4-2 [167 kB] 754s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.11-1 [104 kB] 754s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.2-1 [105 kB] 754s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tk armhf 3.13.9-3 [11.2 kB] 754s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 12.0.0-1ubuntu1 [9168 B] 754s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 754s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 754s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 754s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 754s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 754s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.9-1 [1149 kB] 754s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 754s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19build1 [20.3 kB] 754s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3build1 [278 kB] 754s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.86+dfsg-1 [1652 kB] 754s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 754s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.3-1 [268 kB] 754s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 754s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 754s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 754s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.5+dfsg-1 [26.1 kB] 754s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.16.3-4 [18.3 MB] 755s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 755s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 755s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 755s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 755s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1build1 [9543 kB] 755s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.61.1-3 [1697 kB] 755s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 755s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 756s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 756s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 756s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 756s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-seaborn all 0.13.2-6 [225 kB] 756s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyani armhf 0.2.13-1 [46.7 kB] 757s Fetched 126 MB in 5s (25.3 MB/s) 757s Selecting previously unselected package python3-numpy-dev:armhf. 757s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 757s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 757s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 757s Selecting previously unselected package libblas3:armhf. 757s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 757s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 757s Selecting previously unselected package libgfortran5:armhf. 757s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 758s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 758s Selecting previously unselected package liblapack3:armhf. 758s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 758s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 758s Selecting previously unselected package python3-numpy. 758s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 758s Unpacking python3-numpy (1:2.3.5+ds-3) ... 758s Selecting previously unselected package libpython3.14-minimal:armhf. 758s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_armhf.deb ... 758s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 758s Selecting previously unselected package python3.14-minimal. 758s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_armhf.deb ... 758s Unpacking python3.14-minimal (3.14.2-1) ... 758s Selecting previously unselected package fonts-dejavu-mono. 758s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 758s Unpacking fonts-dejavu-mono (2.37-8build1) ... 758s Selecting previously unselected package fonts-dejavu-core. 758s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 758s Unpacking fonts-dejavu-core (2.37-8build1) ... 758s Selecting previously unselected package libfontenc1:armhf. 758s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build2_armhf.deb ... 758s Unpacking libfontenc1:armhf (1:1.1.8-1build2) ... 758s Selecting previously unselected package libfreetype6:armhf. 758s Preparing to unpack .../10-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 758s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 758s Selecting previously unselected package x11-common. 758s Preparing to unpack .../11-x11-common_1%3a7.7+24ubuntu1_all.deb ... 758s Unpacking x11-common (1:7.7+24ubuntu1) ... 758s Selecting previously unselected package xfonts-encodings. 758s Preparing to unpack .../12-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 758s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 758s Selecting previously unselected package xfonts-utils. 758s Preparing to unpack .../13-xfonts-utils_1%3a7.7+7build1_armhf.deb ... 758s Unpacking xfonts-utils (1:7.7+7build1) ... 758s Selecting previously unselected package fonts-urw-base35. 759s Preparing to unpack .../14-fonts-urw-base35_20200910-8build1_all.deb ... 759s Unpacking fonts-urw-base35 (20200910-8build1) ... 759s Selecting previously unselected package fontconfig-config. 759s Preparing to unpack .../15-fontconfig-config_2.17.1-3ubuntu1_armhf.deb ... 759s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 759s Selecting previously unselected package fonts-dejavu-extra. 759s Preparing to unpack .../16-fonts-dejavu-extra_2.37-8build1_all.deb ... 759s Unpacking fonts-dejavu-extra (2.37-8build1) ... 760s Selecting previously unselected package fonts-lyx. 760s Preparing to unpack .../17-fonts-lyx_2.5.0~RC2-3_all.deb ... 760s Unpacking fonts-lyx (2.5.0~RC2-3) ... 760s Selecting previously unselected package libfontconfig1:armhf. 760s Preparing to unpack .../18-libfontconfig1_2.17.1-3ubuntu1_armhf.deb ... 760s Unpacking libfontconfig1:armhf (2.17.1-3ubuntu1) ... 760s Selecting previously unselected package libpixman-1-0:armhf. 760s Preparing to unpack .../19-libpixman-1-0_0.46.4-1_armhf.deb ... 760s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 760s Selecting previously unselected package libxcb-render0:armhf. 760s Preparing to unpack .../20-libxcb-render0_1.17.0-2ubuntu1_armhf.deb ... 760s Unpacking libxcb-render0:armhf (1.17.0-2ubuntu1) ... 760s Selecting previously unselected package libxcb-shm0:armhf. 760s Preparing to unpack .../21-libxcb-shm0_1.17.0-2ubuntu1_armhf.deb ... 760s Unpacking libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 760s Selecting previously unselected package libxrender1:armhf. 760s Preparing to unpack .../22-libxrender1_1%3a0.9.12-1_armhf.deb ... 760s Unpacking libxrender1:armhf (1:0.9.12-1) ... 760s Selecting previously unselected package libcairo2:armhf. 760s Preparing to unpack .../23-libcairo2_1.18.4-3_armhf.deb ... 760s Unpacking libcairo2:armhf (1.18.4-3) ... 760s Selecting previously unselected package libdeflate0:armhf. 760s Preparing to unpack .../24-libdeflate0_1.23-2_armhf.deb ... 760s Unpacking libdeflate0:armhf (1.23-2) ... 760s Selecting previously unselected package libgomp1:armhf. 760s Preparing to unpack .../25-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 760s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 760s Selecting previously unselected package libgraphite2-3:armhf. 760s Preparing to unpack .../26-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 760s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 760s Selecting previously unselected package libharfbuzz0b:armhf. 760s Preparing to unpack .../27-libharfbuzz0b_12.3.2-1_armhf.deb ... 760s Unpacking libharfbuzz0b:armhf (12.3.2-1) ... 760s Selecting previously unselected package libimagequant0:armhf. 760s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_armhf.deb ... 760s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 760s Selecting previously unselected package libjpeg-turbo8:armhf. 760s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 760s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 760s Selecting previously unselected package libjpeg8:armhf. 760s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_armhf.deb ... 760s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 760s Selecting previously unselected package liblcms2-2:armhf. 760s Preparing to unpack .../31-liblcms2-2_2.17-1_armhf.deb ... 760s Unpacking liblcms2-2:armhf (2.17-1) ... 760s Selecting previously unselected package liblerc4:armhf. 760s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 760s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 760s Selecting previously unselected package libmbedcrypto16:armhf. 760s Preparing to unpack .../33-libmbedcrypto16_3.6.5-0.1ubuntu2_armhf.deb ... 760s Unpacking libmbedcrypto16:armhf (3.6.5-0.1ubuntu2) ... 760s Selecting previously unselected package libmbedx509-7:armhf. 760s Preparing to unpack .../34-libmbedx509-7_3.6.5-0.1ubuntu2_armhf.deb ... 760s Unpacking libmbedx509-7:armhf (3.6.5-0.1ubuntu2) ... 760s Selecting previously unselected package libmbedtls21:armhf. 760s Preparing to unpack .../35-libmbedtls21_3.6.5-0.1ubuntu2_armhf.deb ... 760s Unpacking libmbedtls21:armhf (3.6.5-0.1ubuntu2) ... 760s Selecting previously unselected package libpython3.14-stdlib:armhf. 760s Preparing to unpack .../36-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 760s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 761s Selecting previously unselected package libqhull-r8.0:armhf. 761s Preparing to unpack .../37-libqhull-r8.0_2020.2-8_armhf.deb ... 761s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 761s Selecting previously unselected package libraqm0:armhf. 761s Preparing to unpack .../38-libraqm0_0.10.3-1_armhf.deb ... 761s Unpacking libraqm0:armhf (0.10.3-1) ... 761s Selecting previously unselected package libsharpyuv0:armhf. 761s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 761s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 761s Selecting previously unselected package libtcl8.6:armhf. 761s Preparing to unpack .../40-libtcl8.6_8.6.17+dfsg-1build1_armhf.deb ... 761s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 761s Selecting previously unselected package libjbig0:armhf. 761s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 761s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 761s Selecting previously unselected package libwebp7:armhf. 761s Preparing to unpack .../42-libwebp7_1.5.0-0.1build1_armhf.deb ... 761s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 761s Selecting previously unselected package libtiff6:armhf. 761s Preparing to unpack .../43-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 761s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 761s Selecting previously unselected package libxft2:armhf. 761s Preparing to unpack .../44-libxft2_2.3.6-1build2_armhf.deb ... 761s Unpacking libxft2:armhf (2.3.6-1build2) ... 761s Selecting previously unselected package libxss1:armhf. 761s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_armhf.deb ... 761s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 761s Selecting previously unselected package libtk8.6:armhf. 761s Preparing to unpack .../46-libtk8.6_8.6.17-1_armhf.deb ... 761s Unpacking libtk8.6:armhf (8.6.17-1) ... 761s Selecting previously unselected package libwebpdemux2:armhf. 761s Preparing to unpack .../47-libwebpdemux2_1.5.0-0.1build1_armhf.deb ... 761s Unpacking libwebpdemux2:armhf (1.5.0-0.1build1) ... 761s Selecting previously unselected package libwebpmux3:armhf. 761s Preparing to unpack .../48-libwebpmux3_1.5.0-0.1build1_armhf.deb ... 761s Unpacking libwebpmux3:armhf (1.5.0-0.1build1) ... 761s Selecting previously unselected package libxslt1.1:armhf. 761s Preparing to unpack .../49-libxslt1.1_1.1.43-0.3_armhf.deb ... 761s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 761s Selecting previously unselected package libzopfli1. 761s Preparing to unpack .../50-libzopfli1_1.0.3-3build1_armhf.deb ... 761s Unpacking libzopfli1 (1.0.3-3build1) ... 761s Selecting previously unselected package mummer. 761s Preparing to unpack .../51-mummer_3.23+dfsg-8build1_armhf.deb ... 761s Unpacking mummer (3.23+dfsg-8build1) ... 761s Selecting previously unselected package ncbi-data. 761s Preparing to unpack .../52-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 761s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 762s Selecting previously unselected package ncbi-blast+. 762s Preparing to unpack .../53-ncbi-blast+_2.16.0+ds-7_armhf.deb ... 762s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 762s Selecting previously unselected package python-matplotlib-data. 762s Preparing to unpack .../54-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 762s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 762s Selecting previously unselected package python3.14. 762s Preparing to unpack .../55-python3.14_3.14.2-1_armhf.deb ... 762s Unpacking python3.14 (3.14.2-1) ... 762s Selecting previously unselected package python3-all. 762s Preparing to unpack .../56-python3-all_3.13.9-3_armhf.deb ... 762s Unpacking python3-all (3.13.9-3) ... 762s Selecting previously unselected package python3-charset-normalizer. 762s Preparing to unpack .../57-python3-charset-normalizer_3.4.4-2_armhf.deb ... 762s Unpacking python3-charset-normalizer (3.4.4-2) ... 763s Selecting previously unselected package python3.13-tk. 763s Preparing to unpack .../58-python3.13-tk_3.13.11-1_armhf.deb ... 763s Unpacking python3.13-tk (3.13.11-1) ... 763s Selecting previously unselected package python3.14-tk. 763s Preparing to unpack .../59-python3.14-tk_3.14.2-1_armhf.deb ... 763s Unpacking python3.14-tk (3.14.2-1) ... 763s Selecting previously unselected package python3-tk. 763s Preparing to unpack .../60-python3-tk_3.13.9-3_armhf.deb ... 763s Unpacking python3-tk (3.13.9-3) ... 763s Selecting previously unselected package python3-pil.imagetk:armhf. 763s Preparing to unpack .../61-python3-pil.imagetk_12.0.0-1ubuntu1_armhf.deb ... 763s Unpacking python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 763s Selecting previously unselected package libopenjp2-7:armhf. 763s Preparing to unpack .../62-libopenjp2-7_2.5.4-1_armhf.deb ... 763s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 763s Selecting previously unselected package python3-pil:armhf. 763s Preparing to unpack .../63-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 763s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 763s Selecting previously unselected package python3-cairo. 763s Preparing to unpack .../64-python3-cairo_1.27.0-2build1_armhf.deb ... 763s Unpacking python3-cairo (1.27.0-2build1) ... 763s Selecting previously unselected package python3-freetype. 763s Preparing to unpack .../65-python3-freetype_2.5.1-2_all.deb ... 763s Unpacking python3-freetype (2.5.1-2) ... 763s Selecting previously unselected package python3-rlpycairo. 763s Preparing to unpack .../66-python3-rlpycairo_0.3.0-4_all.deb ... 763s Unpacking python3-rlpycairo (0.3.0-4) ... 763s Selecting previously unselected package python3-reportlab. 763s Preparing to unpack .../67-python3-reportlab_4.4.9-1_all.deb ... 763s Unpacking python3-reportlab (4.4.9-1) ... 763s Selecting previously unselected package sgml-base. 763s Preparing to unpack .../68-sgml-base_1.31+nmu1_all.deb ... 763s Unpacking sgml-base (1.31+nmu1) ... 763s Selecting previously unselected package xml-core. 763s Preparing to unpack .../69-xml-core_0.19build1_all.deb ... 763s Unpacking xml-core (0.19build1) ... 763s Selecting previously unselected package w3c-sgml-lib. 763s Preparing to unpack .../70-w3c-sgml-lib_1.3-3build1_all.deb ... 763s Unpacking w3c-sgml-lib (1.3-3build1) ... 763s Selecting previously unselected package python3-biopython. 763s Preparing to unpack .../71-python3-biopython_1.86+dfsg-1_armhf.deb ... 763s Unpacking python3-biopython (1.86+dfsg-1) ... 764s Selecting previously unselected package python3-brotli. 764s Preparing to unpack .../72-python3-brotli_1.1.0-2build6_armhf.deb ... 764s Unpacking python3-brotli (1.1.0-2build6) ... 764s Selecting previously unselected package python3-contourpy. 764s Preparing to unpack .../73-python3-contourpy_1.3.3-1_armhf.deb ... 764s Unpacking python3-contourpy (1.3.3-1) ... 764s Selecting previously unselected package python3-cycler. 764s Preparing to unpack .../74-python3-cycler_0.12.1-2_all.deb ... 764s Unpacking python3-cycler (0.12.1-2) ... 764s Selecting previously unselected package python3-decorator. 764s Preparing to unpack .../75-python3-decorator_5.2.1-2_all.deb ... 764s Unpacking python3-decorator (5.2.1-2) ... 764s Selecting previously unselected package python3-lxml:armhf. 764s Preparing to unpack .../76-python3-lxml_6.0.2-1_armhf.deb ... 764s Unpacking python3-lxml:armhf (6.0.2-1) ... 764s Selecting previously unselected package python3-lz4. 764s Preparing to unpack .../77-python3-lz4_4.4.5+dfsg-1_armhf.deb ... 764s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 764s Selecting previously unselected package python3-scipy. 764s Preparing to unpack .../78-python3-scipy_1.16.3-4_armhf.deb ... 764s Unpacking python3-scipy (1.16.3-4) ... 765s Selecting previously unselected package python3-mpmath. 765s Preparing to unpack .../79-python3-mpmath_1.3.0-2_all.deb ... 765s Unpacking python3-mpmath (1.3.0-2) ... 765s Selecting previously unselected package python3-sympy. 765s Preparing to unpack .../80-python3-sympy_1.14.0-2_all.deb ... 765s Unpacking python3-sympy (1.14.0-2) ... 765s Selecting previously unselected package python3-ufolib2. 765s Preparing to unpack .../81-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 765s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 765s Selecting previously unselected package python3-zopfli. 765s Preparing to unpack .../82-python3-zopfli_0.4.0-1_armhf.deb ... 765s Unpacking python3-zopfli (0.4.0-1) ... 765s Selecting previously unselected package unicode-data. 766s Preparing to unpack .../83-unicode-data_16.0.0-1build1_all.deb ... 766s Unpacking unicode-data (16.0.0-1build1) ... 766s Selecting previously unselected package python3-fonttools. 766s Preparing to unpack .../84-python3-fonttools_4.61.1-3_armhf.deb ... 766s Unpacking python3-fonttools (4.61.1-3) ... 766s Selecting previously unselected package python3-kiwisolver. 766s Preparing to unpack .../85-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 766s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 766s Selecting previously unselected package python3-matplotlib. 766s Preparing to unpack .../86-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 766s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 767s Selecting previously unselected package python3-pytz. 767s Preparing to unpack .../87-python3-pytz_2025.2-5_all.deb ... 767s Unpacking python3-pytz (2025.2-5) ... 767s Selecting previously unselected package python3-pandas-lib:armhf. 767s Preparing to unpack .../88-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 767s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 767s Selecting previously unselected package python3-pandas. 767s Preparing to unpack .../89-python3-pandas_2.3.3+dfsg-3_all.deb ... 767s Unpacking python3-pandas (2.3.3+dfsg-3) ... 768s Selecting previously unselected package python3-seaborn. 768s Preparing to unpack .../90-python3-seaborn_0.13.2-6_all.deb ... 768s Unpacking python3-seaborn (0.13.2-6) ... 768s Selecting previously unselected package python3-pyani. 768s Preparing to unpack .../91-python3-pyani_0.2.13-1_armhf.deb ... 768s Unpacking python3-pyani (0.2.13-1) ... 768s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 768s Setting up liblcms2-2:armhf (2.17-1) ... 768s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 768s Setting up libpixman-1-0:armhf (0.46.4-1) ... 768s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 768s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 768s Setting up libxrender1:armhf (1:0.9.12-1) ... 768s Setting up python3-lz4 (4.4.5+dfsg-1) ... 768s Setting up libxcb-render0:armhf (1.17.0-2ubuntu1) ... 768s Setting up python3-charset-normalizer (3.4.4-2) ... 768s Setting up fonts-lyx (2.5.0~RC2-3) ... 768s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 768s Setting up x11-common (1:7.7+24ubuntu1) ... 769s Setting up libdeflate0:armhf (1.23-2) ... 769s Setting up libqhull-r8.0:armhf (2020.2-8) ... 769s Setting up python3-pytz (2025.2-5) ... 769s Setting up libxcb-shm0:armhf (1.17.0-2ubuntu1) ... 769s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 769s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 769s Setting up unicode-data (16.0.0-1build1) ... 769s Setting up python3-decorator (5.2.1-2) ... 769s Setting up libfontenc1:armhf (1:1.1.8-1build2) ... 769s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 769s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 769s Setting up libzopfli1 (1.0.3-3build1) ... 769s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 769s Setting up python3-brotli (1.1.0-2build6) ... 770s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 770s Setting up python3-cycler (0.12.1-2) ... 770s Setting up libimagequant0:armhf (2.18.0-1build1) ... 770s Setting up fonts-dejavu-mono (2.37-8build1) ... 770s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 770s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 770s Setting up libtcl8.6:armhf (8.6.17+dfsg-1build1) ... 770s Setting up fonts-dejavu-core (2.37-8build1) ... 770s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 770s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 770s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 770s Setting up fonts-dejavu-extra (2.37-8build1) ... 770s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 770s Setting up mummer (3.23+dfsg-8build1) ... 770s Setting up libopenjp2-7:armhf (2.5.4-1) ... 770s Setting up libharfbuzz0b:armhf (12.3.2-1) ... 770s Setting up sgml-base (1.31+nmu1) ... 770s Setting up libxss1:armhf (1:1.2.3-1build4) ... 770s Setting up libmbedcrypto16:armhf (3.6.5-0.1ubuntu2) ... 770s Setting up python3-mpmath (1.3.0-2) ... 771s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 771s Setting up libwebpmux3:armhf (1.5.0-0.1build1) ... 771s Setting up python3.14-minimal (3.14.2-1) ... 772s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 772s Setting up python3-sympy (1.14.0-2) ... 780s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 780s return p.returncode 787s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 787s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 787s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 787s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 788s Setting up libwebpdemux2:armhf (1.5.0-0.1build1) ... 788s Setting up python3-freetype (2.5.1-2) ... 788s Setting up xfonts-utils (1:7.7+7build1) ... 788s Setting up python3-zopfli (0.4.0-1) ... 788s Setting up libmbedx509-7:armhf (3.6.5-0.1ubuntu2) ... 788s Setting up libraqm0:armhf (0.10.3-1) ... 788s Setting up python3-numpy (1:2.3.5+ds-3) ... 793s Setting up libmbedtls21:armhf (3.6.5-0.1ubuntu2) ... 793s Setting up python3-lxml:armhf (6.0.2-1) ... 793s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 793s Setting up xml-core (0.19build1) ... 793s Setting up python3-contourpy (1.3.3-1) ... 794s Setting up libfontconfig1:armhf (2.17.1-3ubuntu1) ... 794s Setting up python3.14 (3.14.2-1) ... 795s Setting up libxft2:armhf (2.3.6-1build2) ... 795s Setting up python3-scipy (1.16.3-4) ... 804s Setting up libtk8.6:armhf (8.6.17-1) ... 804s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 804s Setting up python3-all (3.13.9-3) ... 804s Setting up fonts-urw-base35 (20200910-8build1) ... 805s Setting up libcairo2:armhf (1.18.4-3) ... 805s Setting up python3.13-tk (3.13.11-1) ... 805s Setting up ncbi-blast+ (2.16.0+ds-7) ... 805s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 805s Setting up python3-pandas (2.3.3+dfsg-3) ... 817s Setting up python3.14-tk (3.14.2-1) ... 817s Setting up python3-cairo (1.27.0-2build1) ... 817s Setting up python3-tk (3.13.9-3) ... 817s Setting up python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 818s Setting up python3-rlpycairo (0.3.0-4) ... 818s Setting up python3-reportlab (4.4.9-1) ... 820s Setting up python3-fonttools (4.61.1-3) ... 822s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 822s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 826s Setting up python3-seaborn (0.13.2-6) ... 827s Processing triggers for systemd (259-1ubuntu3) ... 827s Processing triggers for man-db (2.13.1-1) ... 828s Processing triggers for libc-bin (2.42-2ubuntu4) ... 828s Processing triggers for sgml-base (1.31+nmu1) ... 828s Setting up w3c-sgml-lib (1.3-3build1) ... 860s Setting up python3-biopython (1.86+dfsg-1) ... 863s Setting up python3-pyani (0.2.13-1) ... 899s autopkgtest [21:50:24]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyani; print(pyani)" ; done 899s autopkgtest [21:50:24]: test autodep8-python3: [----------------------- 901s Testing with python3.14: 901s 901s Testing with python3.13: 901s 901s autopkgtest [21:50:26]: test autodep8-python3: -----------------------] 905s autodep8-python3 PASS (superficial) 905s autopkgtest [21:50:30]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 909s autopkgtest [21:50:34]: @@@@@@@@@@@@@@@@@@@@ summary 909s run-unit-test PASS 909s autodep8-python3 PASS (superficial)