0s autopkgtest [19:57:05]: starting date and time: 2026-01-22 19:57:05+0000 0s autopkgtest [19:57:05]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [19:57:05]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n4s49yhc/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade pyfastx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- lxd -r lxd-armhf-10.145.243.115 lxd-armhf-10.145.243.115:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [19:57:27]: testbed dpkg architecture: armhf 24s autopkgtest [19:57:29]: testbed apt version: 3.1.12 28s autopkgtest [19:57:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [19:57:35]: testbed release detected to be: None 38s autopkgtest [19:57:43]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 41s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 41s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 41s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 41s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 41s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 41s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 42s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 42s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.3 kB] 42s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [658 kB] 42s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [4896 B] 42s Get:12 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 42s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 44s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 45s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 48s Fetched 42.2 MB in 8s (5541 kB/s) 50s Reading package lists... 56s autopkgtest [19:58:01]: upgrading testbed (apt dist-upgrade and autopurge) 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 60s The following packages were automatically installed and are no longer required: 60s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 60s Use 'apt autoremove' to remove them. 60s The following NEW packages will be installed: 60s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 60s The following packages will be upgraded: 60s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 60s python3-gdbm python3-minimal 60s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 6525 kB of archives. 60s After this operation, 22.5 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 61s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 61s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 61s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libplymouth5 armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [147 kB] 61s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth-theme-ubuntu-text armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.0 kB] 61s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [150 kB] 62s Fetched 6525 kB in 1s (6441 kB/s) 62s Selecting previously unselected package libpython3.14-minimal:armhf. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 62s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 62s Selecting previously unselected package python3.14-minimal. 62s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking python3.14-minimal (3.14.2-1) ... 62s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 62s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 62s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 62s Setting up python3.14-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 64s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 64s Setting up python3-minimal (3.14.2-1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 65s Preparing to unpack .../0-python3_3.14.2-1_armhf.deb ... 65s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 65s Selecting previously unselected package libpython3.14-stdlib:armhf. 65s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 65s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 65s Selecting previously unselected package python3.14. 65s Preparing to unpack .../2-python3.14_3.14.2-1_armhf.deb ... 65s Unpacking python3.14 (3.14.2-1) ... 65s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_armhf.deb ... 65s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 65s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 65s Unpacking libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 65s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 65s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 65s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 65s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 65s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 65s Setting up libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 65s Setting up python3.14 (3.14.2-1) ... 67s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 67s Setting up python3-gdbm (3.14.2-1) ... 67s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 67s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 67s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 68s Setting up python3 (3.14.2-1) ... 68s Processing triggers for libc-bin (2.42-2ubuntu4) ... 68s Processing triggers for systemd (259-1ubuntu2) ... 68s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for initramfs-tools (0.150ubuntu7) ... 69s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 69s Processing triggers for initramfs-tools (0.150ubuntu7) ... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Solving dependencies... 74s The following packages will be REMOVED: 74s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 74s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 74s After this operation, 21.3 MB disk space will be freed. 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 74s Removing python3.13 (3.13.11-1) ... 75s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 75s Removing python3.13-minimal (3.13.11-1) ... 76s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 76s Processing triggers for man-db (2.13.1-1) ... 76s Processing triggers for systemd (259-1ubuntu2) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 76s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 76s Purging configuration files for python3.13-minimal (3.13.11-1) ... 79s autopkgtest [19:58:24]: rebooting testbed after setup commands that affected boot 123s autopkgtest [19:59:08]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 150s autopkgtest [19:59:35]: @@@@@@@@@@@@@@@@@@@@ apt-source pyfastx 166s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pyfastx 2.3.0-1 (dsc) [2289 B] 166s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pyfastx 2.3.0-1 (tar) [231 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pyfastx 2.3.0-1 (diff) [7868 B] 166s gpgv: Signature made Sat Jan 17 18:29:49 2026 UTC 166s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 166s gpgv: issuer "emollier@debian.org" 166s gpgv: Can't check signature: No public key 166s dpkg-source: warning: cannot verify inline signature for ./pyfastx_2.3.0-1.dsc: no acceptable signature found 166s autopkgtest [19:59:51]: testing package pyfastx version 2.3.0-1 168s autopkgtest [19:59:53]: build not needed 171s autopkgtest [19:59:56]: test run-unit-test: preparing testbed 172s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Solving dependencies... 174s The following NEW packages will be installed: 174s libpython3.13-minimal libpython3.13-stdlib pyfastx python3-all 174s python3-pyfaidx python3-pyfastx python3.13 python3.13-minimal 174s 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 5861 kB of archives. 174s After this operation, 21.9 MB of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-minimal armhf 3.13.11-1 [875 kB] 174s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-minimal armhf 3.13.11-1 [2055 kB] 175s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-stdlib armhf 3.13.11-1 [1960 kB] 175s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13 armhf 3.13.11-1 [758 kB] 175s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyfaidx all 0.8.1.3-2 [29.7 kB] 175s Get:6 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyfastx armhf 2.3.0-1 [60.9 kB] 175s Get:7 http://ftpmaster.internal/ubuntu resolute/universe armhf pyfastx armhf 2.3.0-1 [123 kB] 175s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-all armhf 3.14.2-1 [888 B] 175s Fetched 5861 kB in 1s (6952 kB/s) 175s Selecting previously unselected package libpython3.13-minimal:armhf. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 175s Preparing to unpack .../0-libpython3.13-minimal_3.13.11-1_armhf.deb ... 175s Unpacking libpython3.13-minimal:armhf (3.13.11-1) ... 176s Selecting previously unselected package python3.13-minimal. 176s Preparing to unpack .../1-python3.13-minimal_3.13.11-1_armhf.deb ... 176s Unpacking python3.13-minimal (3.13.11-1) ... 176s Selecting previously unselected package libpython3.13-stdlib:armhf. 176s Preparing to unpack .../2-libpython3.13-stdlib_3.13.11-1_armhf.deb ... 176s Unpacking libpython3.13-stdlib:armhf (3.13.11-1) ... 176s Selecting previously unselected package python3.13. 176s Preparing to unpack .../3-python3.13_3.13.11-1_armhf.deb ... 176s Unpacking python3.13 (3.13.11-1) ... 176s Selecting previously unselected package python3-pyfaidx. 176s Preparing to unpack .../4-python3-pyfaidx_0.8.1.3-2_all.deb ... 176s Unpacking python3-pyfaidx (0.8.1.3-2) ... 176s Selecting previously unselected package python3-pyfastx. 176s Preparing to unpack .../5-python3-pyfastx_2.3.0-1_armhf.deb ... 176s Unpacking python3-pyfastx (2.3.0-1) ... 176s Selecting previously unselected package pyfastx. 176s Preparing to unpack .../6-pyfastx_2.3.0-1_armhf.deb ... 176s Unpacking pyfastx (2.3.0-1) ... 176s Selecting previously unselected package python3-all. 176s Preparing to unpack .../7-python3-all_3.14.2-1_armhf.deb ... 176s Unpacking python3-all (3.14.2-1) ... 176s Setting up python3-pyfaidx (0.8.1.3-2) ... 177s Setting up python3-pyfastx (2.3.0-1) ... 177s Setting up pyfastx (2.3.0-1) ... 177s Setting up libpython3.13-minimal:armhf (3.13.11-1) ... 177s Setting up python3.13-minimal (3.13.11-1) ... 178s Setting up libpython3.13-stdlib:armhf (3.13.11-1) ... 178s Setting up python3.13 (3.13.11-1) ... 179s Setting up python3-all (3.14.2-1) ... 179s Processing triggers for man-db (2.13.1-1) ... 180s Processing triggers for systemd (259-1ubuntu2) ... 192s autopkgtest [20:00:17]: test run-unit-test: [----------------------- 195s test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok 195s test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok 195s test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok 195s test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok 195s test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok 195s test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok 195s test_build (tests.test_fasta.FastaTest.test_build) ... ok 195s test_exception (tests.test_fasta.FastaTest.test_exception) ... ok 195s test_fasta (tests.test_fasta.FastaTest.test_fasta) ... ok 196s test_iter_full_name (tests.test_fasta.FastaTest.test_iter_full_name) ... ok 196s test_iter_object (tests.test_fasta.FastaTest.test_iter_object) ... ok 196s test_iter_tuple (tests.test_fasta.FastaTest.test_iter_tuple) ... ok 196s test_iter_upper (tests.test_fasta.FastaTest.test_iter_upper) ... ok 196s test_iter_upper_full_name (tests.test_fasta.FastaTest.test_iter_upper_full_name) ... ok 196s test_key_func (tests.test_fasta.FastaTest.test_key_func) ... ok 196s test_module (tests.test_fasta.FastaTest.test_module) ... ok 196s test_no_upper (tests.test_fasta.FastaTest.test_no_upper) ... ok 197s test_repr (tests.test_fasta.FastaTest.test_repr) ... ok 197s test_seq_fetch (tests.test_fasta.FastaTest.test_seq_fetch) ... ok 197s test_seq_flank (tests.test_fasta.FastaTest.test_seq_flank) ... ok 197s test_seq_type (tests.test_fasta.FastaTest.test_seq_type) ... ok 197s test_statistics (tests.test_fasta.FastaTest.test_statistics) ... ok 197s test_build (tests.test_fastq.FastqTest.test_build) ... ok 197s test_exception (tests.test_fastq.FastqTest.test_exception) ... ok 197s test_fastq (tests.test_fastq.FastqTest.test_fastq) ... ok 198s test_full_name (tests.test_fastq.FastqTest.test_full_name) ... ok 198s test_iter_object (tests.test_fastq.FastqTest.test_iter_object) ... ok 198s test_iter_tuple (tests.test_fastq.FastqTest.test_iter_tuple) ... ok 198s test_negative (tests.test_fastq.FastqTest.test_negative) ... ok 198s test_platform (tests.test_fastq.FastqTest.test_platform) ... ok 198s test_read_len (tests.test_fastq.FastqTest.test_read_len) ... ok 199s test_repr (tests.test_fastq.FastqTest.test_repr) ... ok 199s test_exception (tests.test_fastx.FastxTest.test_exception) ... ok 199s test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok 199s test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok 199s test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok 199s test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok 199s test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok 199s test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok 199s test_read (tests.test_read.ReadTest.test_read) ... ok 199s test_read_description (tests.test_read.ReadTest.test_read_description) ... ok 199s test_read_raw (tests.test_read.ReadTest.test_read_raw) ... ok 199s test_read_seq (tests.test_read.ReadTest.test_read_seq) ... ok 199s test_repr (tests.test_read.ReadTest.test_repr) ... ok 199s test_full_compo (tests.test_sequence.SequenceTest.test_full_compo) ... ok 199s test_seq_by_index (tests.test_sequence.SequenceTest.test_seq_by_index) ... ok 199s test_seq_by_key (tests.test_sequence.SequenceTest.test_seq_by_key) ... ok 199s test_seq_content (tests.test_sequence.SequenceTest.test_seq_content) ... ok 199s test_seq_exception (tests.test_sequence.SequenceTest.test_seq_exception) ... ok 200s test_seq_iter (tests.test_sequence.SequenceTest.test_seq_iter) ... ok 200s test_seq_raw (tests.test_sequence.SequenceTest.test_seq_raw) ... ok 200s test_seq_repr (tests.test_sequence.SequenceTest.test_seq_repr) ... ok 200s test_seq_reverse_complement (tests.test_sequence.SequenceTest.test_seq_reverse_complement) ... ok 200s test_seq_slice (tests.test_sequence.SequenceTest.test_seq_slice) ... ok 200s test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok 200s test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok 200s 200s ---------------------------------------------------------------------- 200s Ran 56 tests in 5.346s 200s 200s OK 200s test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok 200s test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok 200s test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok 200s test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok 200s test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok 200s test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok 201s test_build (tests.test_fasta.FastaTest.test_build) ... ok 201s test_exception (tests.test_fasta.FastaTest.test_exception) ... ok 201s test_fasta (tests.test_fasta.FastaTest.test_fasta) ... ok 201s test_iter_full_name (tests.test_fasta.FastaTest.test_iter_full_name) ... ok 201s test_iter_object (tests.test_fasta.FastaTest.test_iter_object) ... ok 201s test_iter_tuple (tests.test_fasta.FastaTest.test_iter_tuple) ... ok 201s test_iter_upper (tests.test_fasta.FastaTest.test_iter_upper) ... ok 201s test_iter_upper_full_name (tests.test_fasta.FastaTest.test_iter_upper_full_name) ... ok 201s test_key_func (tests.test_fasta.FastaTest.test_key_func) ... ok 201s test_module (tests.test_fasta.FastaTest.test_module) ... ok 201s test_no_upper (tests.test_fasta.FastaTest.test_no_upper) ... ok 202s test_repr (tests.test_fasta.FastaTest.test_repr) ... ok 202s test_seq_fetch (tests.test_fasta.FastaTest.test_seq_fetch) ... ok 202s test_seq_flank (tests.test_fasta.FastaTest.test_seq_flank) ... ok 202s test_seq_type (tests.test_fasta.FastaTest.test_seq_type) ... ok 202s test_statistics (tests.test_fasta.FastaTest.test_statistics) ... ok 202s test_build (tests.test_fastq.FastqTest.test_build) ... ok 202s test_exception (tests.test_fastq.FastqTest.test_exception) ... ok 202s test_fastq (tests.test_fastq.FastqTest.test_fastq) ... ok 203s test_full_name (tests.test_fastq.FastqTest.test_full_name) ... ok 203s test_iter_object (tests.test_fastq.FastqTest.test_iter_object) ... ok 203s test_iter_tuple (tests.test_fastq.FastqTest.test_iter_tuple) ... ok 203s test_negative (tests.test_fastq.FastqTest.test_negative) ... ok 203s test_platform (tests.test_fastq.FastqTest.test_platform) ... ok 203s test_read_len (tests.test_fastq.FastqTest.test_read_len) ... ok 204s test_repr (tests.test_fastq.FastqTest.test_repr) ... ok 204s test_exception (tests.test_fastx.FastxTest.test_exception) ... ok 204s test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok 204s test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok 204s test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok 204s test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok 204s test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok 204s test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok 204s test_read (tests.test_read.ReadTest.test_read) ... ok 204s test_read_description (tests.test_read.ReadTest.test_read_description) ... ok 204s test_read_raw (tests.test_read.ReadTest.test_read_raw) ... ok 204s test_read_seq (tests.test_read.ReadTest.test_read_seq) ... ok 204s test_repr (tests.test_read.ReadTest.test_repr) ... ok 204s test_full_compo (tests.test_sequence.SequenceTest.test_full_compo) ... ok 204s test_seq_by_index (tests.test_sequence.SequenceTest.test_seq_by_index) ... ok 204s test_seq_by_key (tests.test_sequence.SequenceTest.test_seq_by_key) ... ok 204s test_seq_content (tests.test_sequence.SequenceTest.test_seq_content) ... ok 205s test_seq_exception (tests.test_sequence.SequenceTest.test_seq_exception) ... ok 205s test_seq_iter (tests.test_sequence.SequenceTest.test_seq_iter) ... ok 205s test_seq_raw (tests.test_sequence.SequenceTest.test_seq_raw) ... ok 205s test_seq_repr (tests.test_sequence.SequenceTest.test_seq_repr) ... ok 205s test_seq_reverse_complement (tests.test_sequence.SequenceTest.test_seq_reverse_complement) ... ok 205s test_seq_slice (tests.test_sequence.SequenceTest.test_seq_slice) ... ok 205s test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok 205s test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok 205s 205s ---------------------------------------------------------------------- 205s Ran 56 tests in 4.865s 205s 205s OK 205s autopkgtest [20:00:30]: test run-unit-test: -----------------------] 210s autopkgtest [20:00:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 210s run-unit-test PASS 213s autopkgtest [20:00:38]: test test-cli: preparing testbed 239s autopkgtest [20:01:04]: testbed dpkg architecture: armhf 241s autopkgtest [20:01:06]: testbed apt version: 3.1.12 245s autopkgtest [20:01:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 247s autopkgtest [20:01:12]: testbed release detected to be: resolute 256s autopkgtest [20:01:21]: updating testbed package index (apt update) 258s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 258s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 259s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 259s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 259s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 259s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 259s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 259s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 259s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.3 kB] 259s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [658 kB] 259s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [4896 B] 259s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 259s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 260s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 260s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 260s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 260s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 263s Fetched 42.2 MB in 5s (7993 kB/s) 265s Reading package lists... 272s autopkgtest [20:01:37]: upgrading testbed (apt dist-upgrade and autopurge) 273s Reading package lists... 274s Building dependency tree... 274s Reading state information... 274s Calculating upgrade... 275s The following packages were automatically installed and are no longer required: 275s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 275s Use 'apt autoremove' to remove them. 275s The following NEW packages will be installed: 275s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 275s The following packages will be upgraded: 275s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 275s python3-gdbm python3-minimal 276s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 6525 kB of archives. 276s After this operation, 22.5 MB of additional disk space will be used. 276s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 276s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 276s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 276s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 276s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 276s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 277s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 277s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 277s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libplymouth5 armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [147 kB] 277s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth-theme-ubuntu-text armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.0 kB] 277s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [150 kB] 278s Fetched 6525 kB in 2s (3977 kB/s) 278s Selecting previously unselected package libpython3.14-minimal:armhf. 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 278s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 278s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 278s Selecting previously unselected package python3.14-minimal. 278s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 278s Unpacking python3.14-minimal (3.14.2-1) ... 278s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 278s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 278s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 278s Setting up python3.14-minimal (3.14.2-1) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 280s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 280s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 280s Setting up python3-minimal (3.14.2-1) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 280s Preparing to unpack .../0-python3_3.14.2-1_armhf.deb ... 280s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 280s Selecting previously unselected package libpython3.14-stdlib:armhf. 280s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 280s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 281s Selecting previously unselected package python3.14. 281s Preparing to unpack .../2-python3.14_3.14.2-1_armhf.deb ... 281s Unpacking python3.14 (3.14.2-1) ... 281s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_armhf.deb ... 281s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 281s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 281s Unpacking libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 281s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 281s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 281s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 281s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 281s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 281s Setting up libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 281s Setting up python3.14 (3.14.2-1) ... 283s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 283s Setting up python3-gdbm (3.14.2-1) ... 283s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 283s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 283s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 283s Setting up python3 (3.14.2-1) ... 284s Processing triggers for libc-bin (2.42-2ubuntu4) ... 284s Processing triggers for systemd (259-1ubuntu2) ... 284s Processing triggers for man-db (2.13.1-1) ... 285s Processing triggers for initramfs-tools (0.150ubuntu7) ... 285s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 285s Processing triggers for initramfs-tools (0.150ubuntu7) ... 287s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Solving dependencies... 289s The following packages will be REMOVED: 289s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 290s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 290s After this operation, 21.3 MB disk space will be freed. 290s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 290s Removing python3.13 (3.13.11-1) ... 290s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 290s Removing python3.13-minimal (3.13.11-1) ... 291s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 291s Processing triggers for man-db (2.13.1-1) ... 292s Processing triggers for systemd (259-1ubuntu2) ... 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 292s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 292s Purging configuration files for python3.13-minimal (3.13.11-1) ... 294s autopkgtest [20:01:59]: rebooting testbed after setup commands that affected boot 328s autopkgtest [20:02:33]: ERROR: "chmod -R 0755 -- /tmp/autopkgtest.U18KMa/autopkgtest-reboot" failed with stderr "cannot confirm that parent process is alive: Operation not permitted 328s unexpected eof from helper process 328s "