0s autopkgtest [04:37:50]: starting date and time: 2026-02-06 04:37:50+0000 0s autopkgtest [04:37:50]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [04:37:50]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g720kg5a/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:setuptools --apt-upgrade pyensembl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.1-0.1build1 -- lxd -r lxd-armhf-10.145.243.171 lxd-armhf-10.145.243.171:autopkgtest/ubuntu/resolute/armhf 27s autopkgtest [04:38:17]: testbed dpkg architecture: armhf 29s autopkgtest [04:38:19]: testbed apt version: 3.1.14 32s autopkgtest [04:38:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 35s autopkgtest [04:38:25]: testbed release detected to be: None 42s autopkgtest [04:38:32]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 45s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 45s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 45s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 45s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.6 kB] 45s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 45s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [220 kB] 45s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1593 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [254 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1304 kB] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [8048 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 46s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 46s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1410 kB] 46s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 46s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [14.9 MB] 47s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 50s Fetched 43.2 MB in 5s (8543 kB/s) 51s Reading package lists... 58s autopkgtest [04:38:48]: upgrading testbed (apt dist-upgrade and autopurge) 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s The following packages will be upgraded: 61s python3-pkg-resources python3-setuptools 61s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 805 kB of archives. 61s After this operation, 0 B of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-setuptools all 78.1.1-0.1build1 [661 kB] 62s Fetched 805 kB in 1s (1409 kB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 62s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 62s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 62s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 63s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 63s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 63s Setting up python3-setuptools (78.1.1-0.1build1) ... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [04:38:59]: rebooting testbed after setup commands that affected boot 112s autopkgtest [04:39:42]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 138s autopkgtest [04:40:08]: @@@@@@@@@@@@@@@@@@@@ apt-source pyensembl 150s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (dsc) [2291 B] 150s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (tar) [60.7 kB] 150s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (diff) [5448 B] 150s gpgv: Signature made Sun Feb 16 22:16:52 2025 UTC 150s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 150s gpgv: issuer "tchet@debian.org" 150s gpgv: Can't check signature: No public key 150s dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-2.dsc: no acceptable signature found 150s autopkgtest [04:40:20]: testing package pyensembl version 2.3.13-2 153s autopkgtest [04:40:23]: build not needed 155s autopkgtest [04:40:25]: test run-unit-test: preparing testbed 157s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 158s The following NEW packages will be installed: 158s libblas3 libgfortran5 liblapack3 libpython3.14-minimal libpython3.14-stdlib 158s pyensembl pylint python3-all python3-astroid python3-datacache python3-dill 158s python3-gtfparse python3-iniconfig python3-isort python3-logilab-common 158s python3-mccabe python3-memoized-property python3-mypy-extensions 158s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 158s python3-platformdirs python3-pluggy python3-pytest python3-pytz 158s python3-serializable python3-tomlkit python3-typechecks python3.14 158s python3.14-minimal 158s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 24.8 MB of archives. 158s After this operation, 113 MB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 159s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 159s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 159s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-astroid all 4.0.2-1ubuntu1 [172 kB] 159s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-isort all 7.0.0-1 [59.7 kB] 159s Get:11 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mypy-extensions all 1.1.0-1 [6716 B] 159s Get:12 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-logilab-common all 2.1.0-1build1 [95.9 kB] 159s Get:13 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dill all 0.4.0-1 [84.8 kB] 159s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mccabe all 0.7.0-1build1 [8926 B] 159s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 159s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tomlkit all 0.13.3-2 [39.1 kB] 159s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf pylint all 4.0.4-1 [346 kB] 159s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 159s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 159s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 160s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-typechecks all 0.1.0+ds-4 [4562 B] 160s Get:22 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datacache all 1.4.1-2 [13.1 kB] 160s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 160s Get:24 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-memoized-property all 1.0.3-2build1 [5328 B] 160s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-serializable all 0.4.1+ds-2 [8438 B] 160s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf pyensembl all 2.3.13-2 [37.2 kB] 160s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 160s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.9-3 [890 B] 160s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 160s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 160s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 160s Fetched 24.8 MB in 1s (18.8 MB/s) 160s Selecting previously unselected package python3-numpy-dev:armhf. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 160s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 160s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 160s Selecting previously unselected package libblas3:armhf. 160s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 160s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 160s Selecting previously unselected package libgfortran5:armhf. 160s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 160s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 160s Selecting previously unselected package liblapack3:armhf. 160s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 160s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 160s Selecting previously unselected package python3-numpy. 160s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 160s Unpacking python3-numpy (1:2.3.5+ds-3) ... 161s Selecting previously unselected package libpython3.14-minimal:armhf. 161s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_armhf.deb ... 161s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 161s Selecting previously unselected package python3.14-minimal. 161s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_armhf.deb ... 161s Unpacking python3.14-minimal (3.14.2-1) ... 161s Selecting previously unselected package libpython3.14-stdlib:armhf. 161s Preparing to unpack .../07-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 161s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 161s Selecting previously unselected package python3-astroid. 161s Preparing to unpack .../08-python3-astroid_4.0.2-1ubuntu1_all.deb ... 161s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 161s Selecting previously unselected package python3-isort. 161s Preparing to unpack .../09-python3-isort_7.0.0-1_all.deb ... 161s Unpacking python3-isort (7.0.0-1) ... 161s Selecting previously unselected package python3-mypy-extensions. 161s Preparing to unpack .../10-python3-mypy-extensions_1.1.0-1_all.deb ... 161s Unpacking python3-mypy-extensions (1.1.0-1) ... 161s Selecting previously unselected package python3-logilab-common. 161s Preparing to unpack .../11-python3-logilab-common_2.1.0-1build1_all.deb ... 161s Unpacking python3-logilab-common (2.1.0-1build1) ... 161s Selecting previously unselected package python3-dill. 161s Preparing to unpack .../12-python3-dill_0.4.0-1_all.deb ... 161s Unpacking python3-dill (0.4.0-1) ... 161s Selecting previously unselected package python3-mccabe. 161s Preparing to unpack .../13-python3-mccabe_0.7.0-1build1_all.deb ... 161s Unpacking python3-mccabe (0.7.0-1build1) ... 161s Selecting previously unselected package python3-platformdirs. 161s Preparing to unpack .../14-python3-platformdirs_4.5.1-1_all.deb ... 161s Unpacking python3-platformdirs (4.5.1-1) ... 161s Selecting previously unselected package python3-tomlkit. 161s Preparing to unpack .../15-python3-tomlkit_0.13.3-2_all.deb ... 161s Unpacking python3-tomlkit (0.13.3-2) ... 161s Selecting previously unselected package pylint. 161s Preparing to unpack .../16-pylint_4.0.4-1_all.deb ... 161s Unpacking pylint (4.0.4-1) ... 161s Selecting previously unselected package python3-pytz. 161s Preparing to unpack .../17-python3-pytz_2025.2-5_all.deb ... 161s Unpacking python3-pytz (2025.2-5) ... 161s Selecting previously unselected package python3-pandas-lib:armhf. 161s Preparing to unpack .../18-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 161s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 162s Selecting previously unselected package python3-pandas. 162s Preparing to unpack .../19-python3-pandas_2.3.3+dfsg-3_all.deb ... 162s Unpacking python3-pandas (2.3.3+dfsg-3) ... 162s Selecting previously unselected package python3-typechecks. 162s Preparing to unpack .../20-python3-typechecks_0.1.0+ds-4_all.deb ... 162s Unpacking python3-typechecks (0.1.0+ds-4) ... 162s Selecting previously unselected package python3-datacache. 162s Preparing to unpack .../21-python3-datacache_1.4.1-2_all.deb ... 162s Unpacking python3-datacache (1.4.1-2) ... 162s Selecting previously unselected package python3-gtfparse. 162s Preparing to unpack .../22-python3-gtfparse_1.3.0+ds-2_all.deb ... 162s Unpacking python3-gtfparse (1.3.0+ds-2) ... 162s Selecting previously unselected package python3-memoized-property. 162s Preparing to unpack .../23-python3-memoized-property_1.0.3-2build1_all.deb ... 162s Unpacking python3-memoized-property (1.0.3-2build1) ... 162s Selecting previously unselected package python3-serializable. 162s Preparing to unpack .../24-python3-serializable_0.4.1+ds-2_all.deb ... 162s Unpacking python3-serializable (0.4.1+ds-2) ... 162s Selecting previously unselected package pyensembl. 162s Preparing to unpack .../25-pyensembl_2.3.13-2_all.deb ... 162s Unpacking pyensembl (2.3.13-2) ... 162s Selecting previously unselected package python3.14. 162s Preparing to unpack .../26-python3.14_3.14.2-1_armhf.deb ... 162s Unpacking python3.14 (3.14.2-1) ... 162s Selecting previously unselected package python3-all. 162s Preparing to unpack .../27-python3-all_3.13.9-3_armhf.deb ... 162s Unpacking python3-all (3.13.9-3) ... 162s Selecting previously unselected package python3-iniconfig. 162s Preparing to unpack .../28-python3-iniconfig_2.1.0-2_all.deb ... 162s Unpacking python3-iniconfig (2.1.0-2) ... 162s Selecting previously unselected package python3-pluggy. 162s Preparing to unpack .../29-python3-pluggy_1.6.0-2_all.deb ... 162s Unpacking python3-pluggy (1.6.0-2) ... 162s Selecting previously unselected package python3-pytest. 162s Preparing to unpack .../30-python3-pytest_9.0.2-2_all.deb ... 162s Unpacking python3-pytest (9.0.2-2) ... 162s Setting up python3-iniconfig (2.1.0-2) ... 163s Setting up python3-typechecks (0.1.0+ds-4) ... 163s Setting up python3-memoized-property (1.0.3-2build1) ... 163s Setting up python3-mypy-extensions (1.1.0-1) ... 163s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 163s Setting up python3-pytz (2025.2-5) ... 163s Setting up python3-serializable (0.4.1+ds-2) ... 164s Setting up python3-platformdirs (4.5.1-1) ... 164s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 164s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 164s Setting up python3-dill (0.4.0-1) ... 164s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 164s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 164s Setting up python3-isort (7.0.0-1) ... 165s Setting up python3-pluggy (1.6.0-2) ... 165s Setting up python3-astroid (4.0.2-1ubuntu1) ... 165s Setting up python3-mccabe (0.7.0-1build1) ... 166s Setting up python3-tomlkit (0.13.3-2) ... 166s Setting up python3.14-minimal (3.14.2-1) ... 167s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 167s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 167s Setting up python3-logilab-common (2.1.0-1build1) ... 167s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 167s Setting up python3-pytest (9.0.2-2) ... 168s Setting up python3-numpy (1:2.3.5+ds-3) ... 172s Setting up python3.14 (3.14.2-1) ... 174s Setting up pylint (4.0.4-1) ... 175s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 175s Setting up python3-all (3.13.9-3) ... 175s Setting up python3-pandas (2.3.3+dfsg-3) ... 186s Setting up python3-datacache (1.4.1-2) ... 186s Setting up python3-gtfparse (1.3.0+ds-2) ... 186s Setting up pyensembl (2.3.13-2) ... 186s Processing triggers for systemd (259-1ubuntu3) ... 186s Processing triggers for man-db (2.13.1-1) ... 187s Processing triggers for libc-bin (2.42-2ubuntu4) ... 198s autopkgtest [04:41:06]: test run-unit-test: [----------------------- 201s ============================= test session starts ============================== 201s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 201s rootdir: /tmp/autopkgtest.nWErRh/autopkgtest_tmp 201s plugins: typeguard-4.4.4 201s collected 14 items / 1 error 201s 201s ==================================== ERRORS ==================================== 201s _____________________ ERROR collecting tests/test_shell.py _____________________ 201s tests/test_shell.py:1: in 201s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 201s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 201s release_group = root_group.add_argument_group() 201s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 201s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 201s raise ValueError('argument groups cannot be nested') 201s E ValueError: argument groups cannot be nested 201s =============================== warnings summary =============================== 201s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 201s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 201s import pkg_resources 201s 201s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 201s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 201s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 201s declare_namespace(pkg) 201s 201s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 201s =========================== short test summary info ============================ 201s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 201s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 201s ========================= 2 warnings, 1 error in 1.38s ========================= 201s autopkgtest [04:41:11]: test run-unit-test: -----------------------] 205s run-unit-test FAIL non-zero exit status 2 205s autopkgtest [04:41:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 209s autopkgtest [04:41:19]: test pybuild-autopkgtest: preparing testbed 237s autopkgtest [04:41:47]: testbed dpkg architecture: armhf 239s autopkgtest [04:41:49]: testbed apt version: 3.1.14 243s autopkgtest [04:41:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 245s autopkgtest [04:41:55]: testbed release detected to be: resolute 254s autopkgtest [04:42:04]: updating testbed package index (apt update) 256s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 256s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 256s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 256s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 256s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.6 kB] 256s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [220 kB] 256s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 256s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1593 kB] 256s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [254 kB] 256s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1304 kB] 256s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [8048 B] 256s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1410 kB] 256s Get:13 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 256s Get:14 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 257s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 257s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [14.9 MB] 257s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 260s Fetched 43.2 MB in 5s (9128 kB/s) 261s Reading package lists... 268s autopkgtest [04:42:18]: upgrading testbed (apt dist-upgrade and autopurge) 270s Reading package lists... 270s Building dependency tree... 270s Reading state information... 270s Calculating upgrade... 271s The following packages will be upgraded: 271s python3-pkg-resources python3-setuptools 271s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 271s Need to get 805 kB of archives. 271s After this operation, 0 B of additional disk space will be used. 271s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 271s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-setuptools all 78.1.1-0.1build1 [661 kB] 272s Fetched 805 kB in 1s (1494 kB/s) 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 272s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 272s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 272s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 272s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 272s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 273s Setting up python3-setuptools (78.1.1-0.1build1) ... 275s Reading package lists... 276s Building dependency tree... 276s Reading state information... 276s Solving dependencies... 277s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 279s autopkgtest [04:42:29]: rebooting testbed after setup commands that affected boot 349s Reading package lists... 349s Building dependency tree... 349s Reading state information... 349s Solving dependencies... 350s The following NEW packages will be installed: 350s autoconf automake autopoint autotools-dev build-essential cpp cpp-15 350s cpp-15-arm-linux-gnueabihf cpp-arm-linux-gnueabihf debhelper debugedit 350s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-15 350s g++-15-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-15 350s gcc-15-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 350s libarchive-zip-perl libasan8 libblas3 libc-dev-bin libc6-dev libcc1-0 350s libcrypt-dev libdebhelper-perl libdw1t64 libfile-stripnondeterminism-perl 350s libgcc-15-dev libgfortran5 libgomp1 libisl23 liblapack3 libmpc3 350s libpython3.14-minimal libpython3.14-stdlib libstdc++-15-dev libtool 350s libubsan1 linux-libc-dev m4 po-debconf pybuild-plugin-autopkgtest pyensembl 350s pylint python3-all python3-astroid python3-datacache python3-dill 350s python3-gtfparse python3-iniconfig python3-isort python3-logilab-common 350s python3-mccabe python3-memoized-property python3-mypy-extensions 350s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 350s python3-platformdirs python3-pluggy python3-pytest python3-pytz 350s python3-serializable python3-tomlkit python3-typechecks python3.14 350s python3.14-minimal rpcsvc-proto 350s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 350s Need to get 83.2 MB of archives. 350s After this operation, 280 MB of additional disk space will be used. 350s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 350s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 350s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-12ubuntu1 [334 kB] 350s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 351s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 352s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 352s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 352s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf m4 armhf 1.4.20-2 [212 kB] 352s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf autoconf all 2.72-3.1ubuntu1 [384 kB] 352s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf autotools-dev all 20240727.1 [43.4 kB] 352s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf automake all 1:1.18.1-3build1 [582 kB] 352s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf autopoint all 0.23.2-1 [620 kB] 352s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-2ubuntu4 [21.8 kB] 352s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.18.0-9.9 [1819 kB] 352s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 352s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1build1 [62.6 kB] 352s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-2ubuntu4 [1416 kB] 352s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1build1 [553 kB] 352s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 352s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [10.1 MB] 353s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-12ubuntu1 [1032 B] 353s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 353s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 353s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-12ubuntu1 [43.5 kB] 353s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 353s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-12ubuntu1 [2949 kB] 353s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-12ubuntu1 [1187 kB] 353s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-12ubuntu1 [898 kB] 353s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [19.5 MB] 354s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-12ubuntu1 [499 kB] 354s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 354s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 354s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-12ubuntu1 [2638 kB] 354s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [11.4 MB] 354s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15 armhf 15.2.0-12ubuntu1 [25.3 kB] 354s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [968 B] 354s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf g++ armhf 4:15.2.0-4ubuntu1 [1086 B] 354s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf build-essential armhf 12.12ubuntu2 [5256 B] 354s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libdebhelper-perl all 13.28ubuntu1 [97.4 kB] 354s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libtool all 2.5.4-9 [169 kB] 354s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf dh-autoreconf all 21 [12.5 kB] 354s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 354s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libfile-stripnondeterminism-perl all 1.15.0-1build1 [20.6 kB] 354s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf dh-strip-nondeterminism all 1.15.0-1build1 [5110 B] 354s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libdw1t64 armhf 0.194-1 [254 kB] 354s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf debugedit armhf 1:5.2-3build1 [49.0 kB] 354s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf dwz armhf 0.16-2 [114 kB] 354s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf gettext armhf 0.23.2-1 [1059 kB] 354s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf intltool-debian all 0.35.0+20060710.6build1 [24.1 kB] 354s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf po-debconf all 1.0.22 [215 kB] 354s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf debhelper all 13.28ubuntu1 [916 kB] 354s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf dh-python all 7.20260125 [122 kB] 354s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 354s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf pybuild-plugin-autopkgtest all 7.20260125 [1744 B] 355s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-astroid all 4.0.2-1ubuntu1 [172 kB] 355s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-isort all 7.0.0-1 [59.7 kB] 355s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mypy-extensions all 1.1.0-1 [6716 B] 355s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-logilab-common all 2.1.0-1build1 [95.9 kB] 355s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dill all 0.4.0-1 [84.8 kB] 355s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mccabe all 0.7.0-1build1 [8926 B] 355s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 355s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tomlkit all 0.13.3-2 [39.1 kB] 355s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf pylint all 4.0.4-1 [346 kB] 355s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 355s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 355s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 355s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-typechecks all 0.1.0+ds-4 [4562 B] 355s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datacache all 1.4.1-2 [13.1 kB] 355s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 355s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-memoized-property all 1.0.3-2build1 [5328 B] 355s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-serializable all 0.4.1+ds-2 [8438 B] 355s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf pyensembl all 2.3.13-2 [37.2 kB] 355s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 355s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.9-3 [890 B] 355s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 355s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 355s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 356s Fetched 83.2 MB in 5s (15.9 MB/s) 356s Selecting previously unselected package python3-numpy-dev:armhf. 356s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 356s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 356s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 356s Selecting previously unselected package libblas3:armhf. 356s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 356s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 356s Selecting previously unselected package libgfortran5:armhf. 356s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_armhf.deb ... 356s Unpacking libgfortran5:armhf (15.2.0-12ubuntu1) ... 356s Selecting previously unselected package liblapack3:armhf. 356s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 356s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 356s Selecting previously unselected package python3-numpy. 356s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 356s Unpacking python3-numpy (1:2.3.5+ds-3) ... 356s Selecting previously unselected package libpython3.14-minimal:armhf. 356s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_armhf.deb ... 356s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 356s Selecting previously unselected package python3.14-minimal. 356s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_armhf.deb ... 357s Unpacking python3.14-minimal (3.14.2-1) ... 357s Selecting previously unselected package m4. 357s Preparing to unpack .../07-m4_1.4.20-2_armhf.deb ... 357s Unpacking m4 (1.4.20-2) ... 357s Selecting previously unselected package autoconf. 357s Preparing to unpack .../08-autoconf_2.72-3.1ubuntu1_all.deb ... 357s Unpacking autoconf (2.72-3.1ubuntu1) ... 357s Selecting previously unselected package autotools-dev. 357s Preparing to unpack .../09-autotools-dev_20240727.1_all.deb ... 357s Unpacking autotools-dev (20240727.1) ... 357s Selecting previously unselected package automake. 357s Preparing to unpack .../10-automake_1%3a1.18.1-3build1_all.deb ... 357s Unpacking automake (1:1.18.1-3build1) ... 357s Selecting previously unselected package autopoint. 357s Preparing to unpack .../11-autopoint_0.23.2-1_all.deb ... 357s Unpacking autopoint (0.23.2-1) ... 357s Selecting previously unselected package libc-dev-bin. 357s Preparing to unpack .../12-libc-dev-bin_2.42-2ubuntu4_armhf.deb ... 357s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 357s Selecting previously unselected package linux-libc-dev:armhf. 357s Preparing to unpack .../13-linux-libc-dev_6.18.0-9.9_armhf.deb ... 357s Unpacking linux-libc-dev:armhf (6.18.0-9.9) ... 357s Selecting previously unselected package libcrypt-dev:armhf. 357s Preparing to unpack .../14-libcrypt-dev_1%3a4.5.1-1_armhf.deb ... 357s Unpacking libcrypt-dev:armhf (1:4.5.1-1) ... 357s Selecting previously unselected package rpcsvc-proto. 357s Preparing to unpack .../15-rpcsvc-proto_1.4.3-1build1_armhf.deb ... 357s Unpacking rpcsvc-proto (1.4.3-1build1) ... 357s Selecting previously unselected package libc6-dev:armhf. 357s Preparing to unpack .../16-libc6-dev_2.42-2ubuntu4_armhf.deb ... 357s Unpacking libc6-dev:armhf (2.42-2ubuntu4) ... 357s Selecting previously unselected package libisl23:armhf. 357s Preparing to unpack .../17-libisl23_0.27-1build1_armhf.deb ... 357s Unpacking libisl23:armhf (0.27-1build1) ... 357s Selecting previously unselected package libmpc3:armhf. 357s Preparing to unpack .../18-libmpc3_1.3.1-2_armhf.deb ... 357s Unpacking libmpc3:armhf (1.3.1-2) ... 357s Selecting previously unselected package cpp-15-arm-linux-gnueabihf. 357s Preparing to unpack .../19-cpp-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 357s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 357s Selecting previously unselected package cpp-15. 357s Preparing to unpack .../20-cpp-15_15.2.0-12ubuntu1_armhf.deb ... 357s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package cpp-arm-linux-gnueabihf. 358s Preparing to unpack .../21-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 358s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 358s Selecting previously unselected package cpp. 358s Preparing to unpack .../22-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ... 358s Unpacking cpp (4:15.2.0-4ubuntu1) ... 358s Selecting previously unselected package libcc1-0:armhf. 358s Preparing to unpack .../23-libcc1-0_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libcc1-0:armhf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package libgomp1:armhf. 358s Preparing to unpack .../24-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package libasan8:armhf. 358s Preparing to unpack .../25-libasan8_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libasan8:armhf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package libubsan1:armhf. 358s Preparing to unpack .../26-libubsan1_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libubsan1:armhf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package libgcc-15-dev:armhf. 358s Preparing to unpack .../27-libgcc-15-dev_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 358s Preparing to unpack .../28-gcc-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package gcc-15. 358s Preparing to unpack .../29-gcc-15_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 358s Selecting previously unselected package gcc-arm-linux-gnueabihf. 358s Preparing to unpack .../30-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 358s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 358s Selecting previously unselected package gcc. 358s Preparing to unpack .../31-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ... 358s Unpacking gcc (4:15.2.0-4ubuntu1) ... 358s Selecting previously unselected package libstdc++-15-dev:armhf. 358s Preparing to unpack .../32-libstdc++-15-dev_15.2.0-12ubuntu1_armhf.deb ... 358s Unpacking libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 359s Selecting previously unselected package g++-15-arm-linux-gnueabihf. 359s Preparing to unpack .../33-g++-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 359s Unpacking g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 359s Selecting previously unselected package g++-15. 359s Preparing to unpack .../34-g++-15_15.2.0-12ubuntu1_armhf.deb ... 359s Unpacking g++-15 (15.2.0-12ubuntu1) ... 359s Selecting previously unselected package g++-arm-linux-gnueabihf. 359s Preparing to unpack .../35-g++-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 359s Unpacking g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 359s Selecting previously unselected package g++. 359s Preparing to unpack .../36-g++_4%3a15.2.0-4ubuntu1_armhf.deb ... 359s Unpacking g++ (4:15.2.0-4ubuntu1) ... 359s Selecting previously unselected package build-essential. 359s Preparing to unpack .../37-build-essential_12.12ubuntu2_armhf.deb ... 359s Unpacking build-essential (12.12ubuntu2) ... 359s Selecting previously unselected package libdebhelper-perl. 359s Preparing to unpack .../38-libdebhelper-perl_13.28ubuntu1_all.deb ... 359s Unpacking libdebhelper-perl (13.28ubuntu1) ... 359s Selecting previously unselected package libtool. 359s Preparing to unpack .../39-libtool_2.5.4-9_all.deb ... 359s Unpacking libtool (2.5.4-9) ... 359s Selecting previously unselected package dh-autoreconf. 359s Preparing to unpack .../40-dh-autoreconf_21_all.deb ... 359s Unpacking dh-autoreconf (21) ... 359s Selecting previously unselected package libarchive-zip-perl. 359s Preparing to unpack .../41-libarchive-zip-perl_1.68-1_all.deb ... 359s Unpacking libarchive-zip-perl (1.68-1) ... 359s Selecting previously unselected package libfile-stripnondeterminism-perl. 360s Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.15.0-1build1_all.deb ... 360s Unpacking libfile-stripnondeterminism-perl (1.15.0-1build1) ... 360s Selecting previously unselected package dh-strip-nondeterminism. 360s Preparing to unpack .../43-dh-strip-nondeterminism_1.15.0-1build1_all.deb ... 360s Unpacking dh-strip-nondeterminism (1.15.0-1build1) ... 360s Selecting previously unselected package libdw1t64:armhf. 360s Preparing to unpack .../44-libdw1t64_0.194-1_armhf.deb ... 360s Unpacking libdw1t64:armhf (0.194-1) ... 360s Selecting previously unselected package debugedit. 360s Preparing to unpack .../45-debugedit_1%3a5.2-3build1_armhf.deb ... 360s Unpacking debugedit (1:5.2-3build1) ... 360s Selecting previously unselected package dwz. 360s Preparing to unpack .../46-dwz_0.16-2_armhf.deb ... 360s Unpacking dwz (0.16-2) ... 360s Selecting previously unselected package gettext. 360s Preparing to unpack .../47-gettext_0.23.2-1_armhf.deb ... 360s Unpacking gettext (0.23.2-1) ... 360s Selecting previously unselected package intltool-debian. 360s Preparing to unpack .../48-intltool-debian_0.35.0+20060710.6build1_all.deb ... 360s Unpacking intltool-debian (0.35.0+20060710.6build1) ... 360s Selecting previously unselected package po-debconf. 360s Preparing to unpack .../49-po-debconf_1.0.22_all.deb ... 360s Unpacking po-debconf (1.0.22) ... 360s Selecting previously unselected package debhelper. 360s Preparing to unpack .../50-debhelper_13.28ubuntu1_all.deb ... 360s Unpacking debhelper (13.28ubuntu1) ... 360s Selecting previously unselected package dh-python. 360s Preparing to unpack .../51-dh-python_7.20260125_all.deb ... 360s Unpacking dh-python (7.20260125) ... 360s Selecting previously unselected package libpython3.14-stdlib:armhf. 360s Preparing to unpack .../52-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 360s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 360s Selecting previously unselected package pybuild-plugin-autopkgtest. 360s Preparing to unpack .../53-pybuild-plugin-autopkgtest_7.20260125_all.deb ... 360s Unpacking pybuild-plugin-autopkgtest (7.20260125) ... 360s Selecting previously unselected package python3-astroid. 360s Preparing to unpack .../54-python3-astroid_4.0.2-1ubuntu1_all.deb ... 360s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 360s Selecting previously unselected package python3-isort. 360s Preparing to unpack .../55-python3-isort_7.0.0-1_all.deb ... 360s Unpacking python3-isort (7.0.0-1) ... 360s Selecting previously unselected package python3-mypy-extensions. 360s Preparing to unpack .../56-python3-mypy-extensions_1.1.0-1_all.deb ... 360s Unpacking python3-mypy-extensions (1.1.0-1) ... 360s Selecting previously unselected package python3-logilab-common. 360s Preparing to unpack .../57-python3-logilab-common_2.1.0-1build1_all.deb ... 360s Unpacking python3-logilab-common (2.1.0-1build1) ... 360s Selecting previously unselected package python3-dill. 360s Preparing to unpack .../58-python3-dill_0.4.0-1_all.deb ... 360s Unpacking python3-dill (0.4.0-1) ... 360s Selecting previously unselected package python3-mccabe. 360s Preparing to unpack .../59-python3-mccabe_0.7.0-1build1_all.deb ... 360s Unpacking python3-mccabe (0.7.0-1build1) ... 360s Selecting previously unselected package python3-platformdirs. 360s Preparing to unpack .../60-python3-platformdirs_4.5.1-1_all.deb ... 360s Unpacking python3-platformdirs (4.5.1-1) ... 360s Selecting previously unselected package python3-tomlkit. 360s Preparing to unpack .../61-python3-tomlkit_0.13.3-2_all.deb ... 360s Unpacking python3-tomlkit (0.13.3-2) ... 360s Selecting previously unselected package pylint. 361s Preparing to unpack .../62-pylint_4.0.4-1_all.deb ... 361s Unpacking pylint (4.0.4-1) ... 361s Selecting previously unselected package python3-pytz. 361s Preparing to unpack .../63-python3-pytz_2025.2-5_all.deb ... 361s Unpacking python3-pytz (2025.2-5) ... 361s Selecting previously unselected package python3-pandas-lib:armhf. 361s Preparing to unpack .../64-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 361s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 361s Selecting previously unselected package python3-pandas. 361s Preparing to unpack .../65-python3-pandas_2.3.3+dfsg-3_all.deb ... 361s Unpacking python3-pandas (2.3.3+dfsg-3) ... 361s Selecting previously unselected package python3-typechecks. 361s Preparing to unpack .../66-python3-typechecks_0.1.0+ds-4_all.deb ... 361s Unpacking python3-typechecks (0.1.0+ds-4) ... 361s Selecting previously unselected package python3-datacache. 361s Preparing to unpack .../67-python3-datacache_1.4.1-2_all.deb ... 361s Unpacking python3-datacache (1.4.1-2) ... 361s Selecting previously unselected package python3-gtfparse. 361s Preparing to unpack .../68-python3-gtfparse_1.3.0+ds-2_all.deb ... 361s Unpacking python3-gtfparse (1.3.0+ds-2) ... 361s Selecting previously unselected package python3-memoized-property. 361s Preparing to unpack .../69-python3-memoized-property_1.0.3-2build1_all.deb ... 361s Unpacking python3-memoized-property (1.0.3-2build1) ... 361s Selecting previously unselected package python3-serializable. 361s Preparing to unpack .../70-python3-serializable_0.4.1+ds-2_all.deb ... 361s Unpacking python3-serializable (0.4.1+ds-2) ... 361s Selecting previously unselected package pyensembl. 361s Preparing to unpack .../71-pyensembl_2.3.13-2_all.deb ... 361s Unpacking pyensembl (2.3.13-2) ... 361s Selecting previously unselected package python3.14. 361s Preparing to unpack .../72-python3.14_3.14.2-1_armhf.deb ... 361s Unpacking python3.14 (3.14.2-1) ... 361s Selecting previously unselected package python3-all. 361s Preparing to unpack .../73-python3-all_3.13.9-3_armhf.deb ... 361s Unpacking python3-all (3.13.9-3) ... 361s Selecting previously unselected package python3-iniconfig. 361s Preparing to unpack .../74-python3-iniconfig_2.1.0-2_all.deb ... 361s Unpacking python3-iniconfig (2.1.0-2) ... 361s Selecting previously unselected package python3-pluggy. 361s Preparing to unpack .../75-python3-pluggy_1.6.0-2_all.deb ... 361s Unpacking python3-pluggy (1.6.0-2) ... 361s Selecting previously unselected package python3-pytest. 361s Preparing to unpack .../76-python3-pytest_9.0.2-2_all.deb ... 361s Unpacking python3-pytest (9.0.2-2) ... 362s Setting up dh-python (7.20260125) ... 362s Setting up python3-iniconfig (2.1.0-2) ... 362s Setting up python3-typechecks (0.1.0+ds-4) ... 362s Setting up python3-memoized-property (1.0.3-2build1) ... 362s Setting up libarchive-zip-perl (1.68-1) ... 362s Setting up python3-mypy-extensions (1.1.0-1) ... 363s Setting up libdebhelper-perl (13.28ubuntu1) ... 363s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 363s Setting up linux-libc-dev:armhf (6.18.0-9.9) ... 363s Setting up m4 (1.4.20-2) ... 363s Setting up python3-pytz (2025.2-5) ... 363s Setting up python3-serializable (0.4.1+ds-2) ... 363s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 363s Setting up python3-platformdirs (4.5.1-1) ... 363s Setting up libdw1t64:armhf (0.194-1) ... 363s Setting up autotools-dev (20240727.1) ... 363s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 363s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 363s Setting up rpcsvc-proto (1.4.3-1build1) ... 363s Setting up python3-dill (0.4.0-1) ... 363s Setting up libmpc3:armhf (1.3.1-2) ... 363s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 363s Setting up autopoint (0.23.2-1) ... 363s Setting up libgfortran5:armhf (15.2.0-12ubuntu1) ... 363s Setting up autoconf (2.72-3.1ubuntu1) ... 363s Setting up python3-isort (7.0.0-1) ... 364s Setting up python3-pluggy (1.6.0-2) ... 364s Setting up libubsan1:armhf (15.2.0-12ubuntu1) ... 364s Setting up dwz (0.16-2) ... 364s Setting up python3-astroid (4.0.2-1ubuntu1) ... 365s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 365s Setting up libasan8:armhf (15.2.0-12ubuntu1) ... 365s Setting up debugedit (1:5.2-3build1) ... 365s Setting up python3-mccabe (0.7.0-1build1) ... 365s Setting up libisl23:armhf (0.27-1build1) ... 365s Setting up libc-dev-bin (2.42-2ubuntu4) ... 365s Setting up python3-tomlkit (0.13.3-2) ... 365s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 365s Setting up python3.14-minimal (3.14.2-1) ... 366s Setting up libcc1-0:armhf (15.2.0-12ubuntu1) ... 366s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 366s Setting up automake (1:1.18.1-3build1) ... 366s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 366s Setting up libfile-stripnondeterminism-perl (1.15.0-1build1) ... 366s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 366s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 366s Setting up gettext (0.23.2-1) ... 366s Setting up libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 366s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 366s Setting up python3-logilab-common (2.1.0-1build1) ... 367s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 367s Setting up python3-pytest (9.0.2-2) ... 368s Setting up intltool-debian (0.35.0+20060710.6build1) ... 368s Setting up python3-numpy (1:2.3.5+ds-3) ... 372s Setting up dh-strip-nondeterminism (1.15.0-1build1) ... 372s Setting up cpp-15 (15.2.0-12ubuntu1) ... 372s Setting up cpp (4:15.2.0-4ubuntu1) ... 372s Setting up libc6-dev:armhf (2.42-2ubuntu4) ... 372s Setting up python3.14 (3.14.2-1) ... 373s Setting up pylint (4.0.4-1) ... 374s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 374s Setting up po-debconf (1.0.22) ... 374s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 374s Setting up python3-all (3.13.9-3) ... 374s Setting up gcc-15 (15.2.0-12ubuntu1) ... 374s Setting up libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 374s Setting up python3-pandas (2.3.3+dfsg-3) ... 385s Setting up python3-datacache (1.4.1-2) ... 385s Setting up libtool (2.5.4-9) ... 385s Setting up python3-gtfparse (1.3.0+ds-2) ... 385s Setting up g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 385s Setting up gcc (4:15.2.0-4ubuntu1) ... 385s Setting up dh-autoreconf (21) ... 385s Setting up pyensembl (2.3.13-2) ... 385s Setting up g++-15 (15.2.0-12ubuntu1) ... 385s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 385s Setting up debhelper (13.28ubuntu1) ... 385s Setting up g++ (4:15.2.0-4ubuntu1) ... 385s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 385s Setting up build-essential (12.12ubuntu2) ... 385s Setting up pybuild-plugin-autopkgtest (7.20260125) ... 385s Processing triggers for man-db (2.13.1-1) ... 387s Processing triggers for install-info (7.2-5) ... 387s Processing triggers for libc-bin (2.42-2ubuntu4) ... 387s Processing triggers for systemd (259-1ubuntu3) ... 402s autopkgtest [04:44:32]: test pybuild-autopkgtest: pybuild-autopkgtest 402s autopkgtest [04:44:32]: test pybuild-autopkgtest: [----------------------- 404s pybuild-autopkgtest 404s I: pybuild base:384: cd /tmp/autopkgtest.nWErRh/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 405s ============================= test session starts ============================== 405s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 405s cachedir: .pytest_cache 405s rootdir: /tmp/autopkgtest.nWErRh/autopkgtest_tmp/build 405s plugins: typeguard-4.4.4 406s collecting ... collected 125 items / 1 error / 98 deselected / 27 selected 406s 406s ==================================== ERRORS ==================================== 406s _____________________ ERROR collecting tests/test_shell.py _____________________ 406s tests/test_shell.py:1: in 406s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 406s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 406s release_group = root_group.add_argument_group() 406s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 406s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 406s raise ValueError('argument groups cannot be nested') 406s E ValueError: argument groups cannot be nested 406s =============================== warnings summary =============================== 406s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 406s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 406s import pkg_resources 406s 406s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 406s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 406s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 406s declare_namespace(pkg) 406s 406s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 406s =========================== short test summary info ============================ 406s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 406s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 406s ================= 98 deselected, 2 warnings, 1 error in 1.45s ================== 407s E: pybuild pybuild:483: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.nWErRh/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 407s I: pybuild base:384: cd /tmp/autopkgtest.nWErRh/autopkgtest_tmp/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 407s ============================= test session starts ============================== 407s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 407s cachedir: .pytest_cache 407s rootdir: /tmp/autopkgtest.nWErRh/autopkgtest_tmp/build 407s plugins: typeguard-4.4.4 408s collecting ... collected 126 items / 98 deselected / 28 selected 408s 408s tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] 408s tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] 408s tests/test_locus.py::test_locus_overlaps PASSED [ 10%] 408s tests/test_locus.py::test_locus_contains PASSED [ 14%] 408s tests/test_locus.py::test_position_offset PASSED [ 17%] 408s tests/test_locus.py::test_range_offset PASSED [ 21%] 408s tests/test_locus.py::test_locus_distance PASSED [ 25%] 408s tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] 408s tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] 408s tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] 408s tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] 408s tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] 408s tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] 408s tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] 408s tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] 408s tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] 408s tests/test_release_versions.py::test_version_is_none PASSED [ 60%] 408s tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] 408s tests/test_release_versions.py::test_int_version PASSED [ 67%] 408s tests/test_release_versions.py::test_str_version PASSED [ 71%] 408s tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] 408s tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] 408s tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] 408s tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] 408s tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] 408s tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] 408s tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] 408s tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] 408s 408s =============================== warnings summary =============================== 408s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 408s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 408s import pkg_resources 408s 408s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 408s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 408s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 408s declare_namespace(pkg) 408s 408s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 408s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 408s release_group = root_group.add_argument_group() 408s 408s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 408s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 408s path_group = root_group.add_argument_group() 408s 408s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 408s ================ 28 passed, 98 deselected, 4 warnings in 0.99s ================= 408s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13 408s make: *** [/tmp/GnVm8S1QRj/run:4: pybuild-autopkgtest] Error 25 408s pybuild-autopkgtest: error: /tmp/GnVm8S1QRj/run pybuild-autopkgtest returned exit code 2 409s autopkgtest [04:44:39]: test pybuild-autopkgtest: -----------------------] 413s pybuild-autopkgtest FAIL non-zero exit status 25 413s autopkgtest [04:44:43]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 417s autopkgtest [04:44:47]: @@@@@@@@@@@@@@@@@@@@ summary 417s run-unit-test FAIL non-zero exit status 2 417s pybuild-autopkgtest FAIL non-zero exit status 25