0s autopkgtest [19:56:55]: starting date and time: 2026-01-22 19:56:55+0000 0s autopkgtest [19:56:55]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [19:56:55]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hnb908kv/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade pyensembl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- lxd -r lxd-armhf-10.145.243.56 lxd-armhf-10.145.243.56:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [19:57:16]: testbed dpkg architecture: armhf 22s autopkgtest [19:57:17]: testbed apt version: 3.1.12 26s autopkgtest [19:57:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [19:57:23]: testbed release detected to be: None 37s autopkgtest [19:57:32]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 41s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 41s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 41s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 41s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 41s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 41s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 41s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 42s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.3 kB] 42s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [658 kB] 43s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [4896 B] 43s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 54s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 55s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 55s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 56s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 62s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 64s Fetched 42.2 MB in 24s (1741 kB/s) 65s Reading package lists... 71s autopkgtest [19:58:06]: upgrading testbed (apt dist-upgrade and autopurge) 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade... 74s The following packages were automatically installed and are no longer required: 74s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 74s Use 'apt autoremove' to remove them. 74s The following NEW packages will be installed: 74s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 74s The following packages will be upgraded: 74s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 74s python3-gdbm python3-minimal 74s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 6525 kB of archives. 74s After this operation, 22.5 MB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 75s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libplymouth5 armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [147 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth-theme-ubuntu-text armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.0 kB] 75s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [150 kB] 76s Fetched 6525 kB in 1s (7397 kB/s) 76s Selecting previously unselected package libpython3.14-minimal:armhf. 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 76s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 76s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 76s Selecting previously unselected package python3.14-minimal. 76s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 76s Unpacking python3.14-minimal (3.14.2-1) ... 76s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 76s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 76s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 76s Setting up python3.14-minimal (3.14.2-1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 78s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 78s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 78s Setting up python3-minimal (3.14.2-1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 78s Preparing to unpack .../0-python3_3.14.2-1_armhf.deb ... 78s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 78s Selecting previously unselected package libpython3.14-stdlib:armhf. 78s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 78s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 78s Selecting previously unselected package python3.14. 78s Preparing to unpack .../2-python3.14_3.14.2-1_armhf.deb ... 78s Unpacking python3.14 (3.14.2-1) ... 78s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_armhf.deb ... 78s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 78s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 78s Unpacking libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 78s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 78s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 78s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 78s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 79s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 79s Setting up libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 79s Setting up python3.14 (3.14.2-1) ... 80s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 80s Setting up python3-gdbm (3.14.2-1) ... 80s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 80s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 80s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 81s Setting up python3 (3.14.2-1) ... 81s Processing triggers for libc-bin (2.42-2ubuntu4) ... 81s Processing triggers for systemd (259-1ubuntu2) ... 81s Processing triggers for man-db (2.13.1-1) ... 82s Processing triggers for initramfs-tools (0.150ubuntu7) ... 82s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 82s Processing triggers for initramfs-tools (0.150ubuntu7) ... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Solving dependencies... 86s The following packages will be REMOVED: 86s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 87s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 87s After this operation, 21.3 MB disk space will be freed. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 87s Removing python3.13 (3.13.11-1) ... 87s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 87s Removing python3.13-minimal (3.13.11-1) ... 88s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 88s Processing triggers for man-db (2.13.1-1) ... 88s Processing triggers for systemd (259-1ubuntu2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 89s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 89s Purging configuration files for python3.13-minimal (3.13.11-1) ... 91s autopkgtest [19:58:26]: rebooting testbed after setup commands that affected boot 135s autopkgtest [19:59:10]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 161s autopkgtest [19:59:36]: @@@@@@@@@@@@@@@@@@@@ apt-source pyensembl 172s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (dsc) [2291 B] 172s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (tar) [60.7 kB] 172s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (diff) [5448 B] 172s gpgv: Signature made Sun Feb 16 22:16:52 2025 UTC 172s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 172s gpgv: issuer "tchet@debian.org" 172s gpgv: Can't check signature: No public key 172s dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-2.dsc: no acceptable signature found 173s autopkgtest [19:59:48]: testing package pyensembl version 2.3.13-2 175s autopkgtest [19:59:50]: build not needed 177s autopkgtest [19:59:52]: test run-unit-test: preparing testbed 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 180s The following NEW packages will be installed: 180s libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib 180s pyensembl pylint python3-all python3-astroid python3-datacache python3-dill 180s python3-gtfparse python3-iniconfig python3-isort python3-logilab-common 180s python3-mccabe python3-memoized-property python3-mypy-extensions 180s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 180s python3-platformdirs python3-pluggy python3-pytest python3-pytz 180s python3-serializable python3-tomlkit python3-typechecks python3.13 180s python3.13-minimal 181s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 24.3 MB of archives. 181s After this operation, 111 MB of additional disk space will be used. 181s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-minimal armhf 3.13.11-1 [875 kB] 182s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-minimal armhf 3.13.11-1 [2055 kB] 183s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 183s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 183s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-11ubuntu1 [334 kB] 183s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 184s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 184s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-stdlib armhf 3.13.11-1 [1960 kB] 185s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13 armhf 3.13.11-1 [758 kB] 185s Get:10 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-astroid all 4.0.2-1ubuntu1 [172 kB] 185s Get:11 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-isort all 7.0.0-1 [59.7 kB] 185s Get:12 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mypy-extensions all 1.1.0-1 [6716 B] 185s Get:13 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-logilab-common all 2.1.0-1 [95.7 kB] 185s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dill all 0.4.0-1 [84.8 kB] 185s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mccabe all 0.7.0-1build1 [8926 B] 185s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 185s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tomlkit all 0.13.3-2 [39.1 kB] 185s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf pylint all 4.0.4-1 [346 kB] 185s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 185s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 185s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 185s Get:22 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-typechecks all 0.1.0+ds-4 [4562 B] 185s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datacache all 1.4.1-2 [13.1 kB] 185s Get:24 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 185s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-memoized-property all 1.0.3-2build1 [5328 B] 185s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-serializable all 0.4.1+ds-2 [8438 B] 185s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf pyensembl all 2.3.13-2 [37.2 kB] 185s Get:28 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-all armhf 3.14.2-1 [888 B] 185s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 185s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 186s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 186s Fetched 24.3 MB in 5s (4967 kB/s) 186s Selecting previously unselected package libpython3.13-minimal:armhf. 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 186s Preparing to unpack .../00-libpython3.13-minimal_3.13.11-1_armhf.deb ... 186s Unpacking libpython3.13-minimal:armhf (3.13.11-1) ... 186s Selecting previously unselected package python3.13-minimal. 186s Preparing to unpack .../01-python3.13-minimal_3.13.11-1_armhf.deb ... 186s Unpacking python3.13-minimal (3.13.11-1) ... 186s Selecting previously unselected package python3-numpy-dev:armhf. 187s Preparing to unpack .../02-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 187s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 187s Selecting previously unselected package libblas3:armhf. 187s Preparing to unpack .../03-libblas3_3.12.1-7ubuntu1_armhf.deb ... 187s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 187s Selecting previously unselected package libgfortran5:armhf. 187s Preparing to unpack .../04-libgfortran5_15.2.0-11ubuntu1_armhf.deb ... 187s Unpacking libgfortran5:armhf (15.2.0-11ubuntu1) ... 187s Selecting previously unselected package liblapack3:armhf. 187s Preparing to unpack .../05-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 187s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 187s Selecting previously unselected package python3-numpy. 187s Preparing to unpack .../06-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 187s Unpacking python3-numpy (1:2.3.5+ds-3) ... 187s Selecting previously unselected package libpython3.13-stdlib:armhf. 187s Preparing to unpack .../07-libpython3.13-stdlib_3.13.11-1_armhf.deb ... 187s Unpacking libpython3.13-stdlib:armhf (3.13.11-1) ... 187s Selecting previously unselected package python3.13. 187s Preparing to unpack .../08-python3.13_3.13.11-1_armhf.deb ... 187s Unpacking python3.13 (3.13.11-1) ... 187s Selecting previously unselected package python3-astroid. 187s Preparing to unpack .../09-python3-astroid_4.0.2-1ubuntu1_all.deb ... 187s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 187s Selecting previously unselected package python3-isort. 187s Preparing to unpack .../10-python3-isort_7.0.0-1_all.deb ... 187s Unpacking python3-isort (7.0.0-1) ... 187s Selecting previously unselected package python3-mypy-extensions. 187s Preparing to unpack .../11-python3-mypy-extensions_1.1.0-1_all.deb ... 187s Unpacking python3-mypy-extensions (1.1.0-1) ... 187s Selecting previously unselected package python3-logilab-common. 187s Preparing to unpack .../12-python3-logilab-common_2.1.0-1_all.deb ... 187s Unpacking python3-logilab-common (2.1.0-1) ... 187s Selecting previously unselected package python3-dill. 187s Preparing to unpack .../13-python3-dill_0.4.0-1_all.deb ... 187s Unpacking python3-dill (0.4.0-1) ... 188s Selecting previously unselected package python3-mccabe. 188s Preparing to unpack .../14-python3-mccabe_0.7.0-1build1_all.deb ... 188s Unpacking python3-mccabe (0.7.0-1build1) ... 188s Selecting previously unselected package python3-platformdirs. 188s Preparing to unpack .../15-python3-platformdirs_4.5.1-1_all.deb ... 188s Unpacking python3-platformdirs (4.5.1-1) ... 188s Selecting previously unselected package python3-tomlkit. 188s Preparing to unpack .../16-python3-tomlkit_0.13.3-2_all.deb ... 188s Unpacking python3-tomlkit (0.13.3-2) ... 188s Selecting previously unselected package pylint. 188s Preparing to unpack .../17-pylint_4.0.4-1_all.deb ... 188s Unpacking pylint (4.0.4-1) ... 188s Selecting previously unselected package python3-pytz. 188s Preparing to unpack .../18-python3-pytz_2025.2-5_all.deb ... 188s Unpacking python3-pytz (2025.2-5) ... 188s Selecting previously unselected package python3-pandas-lib:armhf. 188s Preparing to unpack .../19-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 188s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 188s Selecting previously unselected package python3-pandas. 188s Preparing to unpack .../20-python3-pandas_2.3.3+dfsg-3_all.deb ... 188s Unpacking python3-pandas (2.3.3+dfsg-3) ... 189s Selecting previously unselected package python3-typechecks. 189s Preparing to unpack .../21-python3-typechecks_0.1.0+ds-4_all.deb ... 189s Unpacking python3-typechecks (0.1.0+ds-4) ... 189s Selecting previously unselected package python3-datacache. 189s Preparing to unpack .../22-python3-datacache_1.4.1-2_all.deb ... 189s Unpacking python3-datacache (1.4.1-2) ... 189s Selecting previously unselected package python3-gtfparse. 189s Preparing to unpack .../23-python3-gtfparse_1.3.0+ds-2_all.deb ... 189s Unpacking python3-gtfparse (1.3.0+ds-2) ... 189s Selecting previously unselected package python3-memoized-property. 189s Preparing to unpack .../24-python3-memoized-property_1.0.3-2build1_all.deb ... 189s Unpacking python3-memoized-property (1.0.3-2build1) ... 189s Selecting previously unselected package python3-serializable. 189s Preparing to unpack .../25-python3-serializable_0.4.1+ds-2_all.deb ... 189s Unpacking python3-serializable (0.4.1+ds-2) ... 189s Selecting previously unselected package pyensembl. 189s Preparing to unpack .../26-pyensembl_2.3.13-2_all.deb ... 189s Unpacking pyensembl (2.3.13-2) ... 189s Selecting previously unselected package python3-all. 189s Preparing to unpack .../27-python3-all_3.14.2-1_armhf.deb ... 189s Unpacking python3-all (3.14.2-1) ... 189s Selecting previously unselected package python3-iniconfig. 189s Preparing to unpack .../28-python3-iniconfig_2.1.0-2_all.deb ... 189s Unpacking python3-iniconfig (2.1.0-2) ... 189s Selecting previously unselected package python3-pluggy. 189s Preparing to unpack .../29-python3-pluggy_1.6.0-2_all.deb ... 189s Unpacking python3-pluggy (1.6.0-2) ... 189s Selecting previously unselected package python3-pytest. 189s Preparing to unpack .../30-python3-pytest_9.0.2-2_all.deb ... 189s Unpacking python3-pytest (9.0.2-2) ... 189s Setting up python3-iniconfig (2.1.0-2) ... 189s Setting up python3-typechecks (0.1.0+ds-4) ... 190s Setting up python3-memoized-property (1.0.3-2build1) ... 190s Setting up python3-mypy-extensions (1.1.0-1) ... 190s Setting up python3-pytz (2025.2-5) ... 191s Setting up python3-serializable (0.4.1+ds-2) ... 191s Setting up python3-platformdirs (4.5.1-1) ... 191s Setting up libpython3.13-minimal:armhf (3.13.11-1) ... 191s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 191s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 191s Setting up python3-dill (0.4.0-1) ... 192s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 192s Setting up libgfortran5:armhf (15.2.0-11ubuntu1) ... 192s Setting up python3-isort (7.0.0-1) ... 192s Setting up python3-pluggy (1.6.0-2) ... 193s Setting up python3-astroid (4.0.2-1ubuntu1) ... 194s Setting up python3.13-minimal (3.13.11-1) ... 195s Setting up python3-mccabe (0.7.0-1build1) ... 195s Setting up python3-tomlkit (0.13.3-2) ... 196s Setting up libpython3.13-stdlib:armhf (3.13.11-1) ... 196s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 196s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 196s Setting up python3-logilab-common (2.1.0-1) ... 196s Setting up python3.13 (3.13.11-1) ... 197s Setting up python3-pytest (9.0.2-2) ... 199s Setting up python3-all (3.14.2-1) ... 199s Setting up python3-numpy (1:2.3.5+ds-3) ... 204s Setting up pylint (4.0.4-1) ... 206s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 206s Setting up python3-pandas (2.3.3+dfsg-3) ... 219s Setting up python3-datacache (1.4.1-2) ... 219s Setting up python3-gtfparse (1.3.0+ds-2) ... 219s Setting up pyensembl (2.3.13-2) ... 220s Processing triggers for systemd (259-1ubuntu2) ... 220s Processing triggers for man-db (2.13.1-1) ... 220s Processing triggers for libc-bin (2.42-2ubuntu4) ... 229s autopkgtest [20:00:44]: test run-unit-test: [----------------------- 233s ============================= test session starts ============================== 233s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 233s rootdir: /tmp/autopkgtest.9sNrot/autopkgtest_tmp 233s plugins: typeguard-4.4.4 233s collected 15 items 233s 233s tests/test_ensembl_object_properties.py . [ 6%] 233s tests/test_locus.py ...... [ 46%] 233s tests/test_release_versions.py ....... [ 93%] 233s tests/test_shell.py . [100%] 233s 233s =============================== warnings summary =============================== 233s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 233s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 233s import pkg_resources 233s 233s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 233s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 233s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 233s declare_namespace(pkg) 233s 233s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 233s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 233s release_group = root_group.add_argument_group() 233s 233s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 233s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 233s path_group = root_group.add_argument_group() 233s 233s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 233s ======================== 15 passed, 4 warnings in 1.20s ======================== 235s ============================= test session starts ============================== 235s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 235s rootdir: /tmp/autopkgtest.9sNrot/autopkgtest_tmp 235s plugins: typeguard-4.4.4 235s collected 14 items / 1 error 235s 235s ==================================== ERRORS ==================================== 235s _____________________ ERROR collecting tests/test_shell.py _____________________ 235s tests/test_shell.py:1: in 235s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 235s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 235s release_group = root_group.add_argument_group() 235s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 235s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 235s raise ValueError('argument groups cannot be nested') 235s E ValueError: argument groups cannot be nested 235s =============================== warnings summary =============================== 235s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 235s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 235s import pkg_resources 235s 235s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 235s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 235s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 235s declare_namespace(pkg) 235s 235s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 235s =========================== short test summary info ============================ 235s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 235s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 235s ========================= 2 warnings, 1 error in 0.97s ========================= 236s autopkgtest [20:00:51]: test run-unit-test: -----------------------] 240s run-unit-test FAIL non-zero exit status 2 240s autopkgtest [20:00:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 244s autopkgtest [20:00:59]: test pybuild-autopkgtest: preparing testbed 271s autopkgtest [20:01:26]: testbed dpkg architecture: armhf 272s autopkgtest [20:01:27]: testbed apt version: 3.1.12 277s autopkgtest [20:01:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 279s autopkgtest [20:01:34]: testbed release detected to be: resolute 287s autopkgtest [20:01:42]: updating testbed package index (apt update) 290s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 291s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 291s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 291s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 291s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 291s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 291s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 292s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 292s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.3 kB] 292s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [658 kB] 292s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [4896 B] 292s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 294s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1398 kB] 295s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 295s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 295s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 297s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 298s Fetched 42.2 MB in 9s (4600 kB/s) 300s Reading package lists... 306s autopkgtest [20:02:01]: upgrading testbed (apt dist-upgrade and autopurge) 308s Reading package lists... 309s Building dependency tree... 309s Reading state information... 310s Calculating upgrade... 311s The following packages were automatically installed and are no longer required: 311s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 311s Use 'apt autoremove' to remove them. 311s The following NEW packages will be installed: 311s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 311s The following packages will be upgraded: 311s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 311s python3-gdbm python3-minimal 311s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 311s Need to get 6525 kB of archives. 311s After this operation, 22.5 MB of additional disk space will be used. 311s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 312s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 312s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 312s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 312s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 312s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 312s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 312s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 312s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libplymouth5 armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [147 kB] 312s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth-theme-ubuntu-text armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.0 kB] 312s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf plymouth armhf 24.004.60+git20250831.4a3c171d-0ubuntu4 [150 kB] 313s Fetched 6525 kB in 1s (7800 kB/s) 313s Selecting previously unselected package libpython3.14-minimal:armhf. 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 313s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 313s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 313s Selecting previously unselected package python3.14-minimal. 313s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 313s Unpacking python3.14-minimal (3.14.2-1) ... 313s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 313s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 313s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 313s Setting up python3.14-minimal (3.14.2-1) ... 316s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 316s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 316s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 316s Setting up python3-minimal (3.14.2-1) ... 316s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 316s Preparing to unpack .../0-python3_3.14.2-1_armhf.deb ... 316s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 316s Selecting previously unselected package libpython3.14-stdlib:armhf. 316s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_armhf.deb ... 316s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 316s Selecting previously unselected package python3.14. 317s Preparing to unpack .../2-python3.14_3.14.2-1_armhf.deb ... 317s Unpacking python3.14 (3.14.2-1) ... 317s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_armhf.deb ... 317s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 317s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 317s Unpacking libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 317s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 317s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 317s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_armhf.deb ... 317s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 317s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 317s Setting up libplymouth5:armhf (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 317s Setting up python3.14 (3.14.2-1) ... 319s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 319s Setting up python3-gdbm (3.14.2-1) ... 319s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 319s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 319s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 319s Setting up python3 (3.14.2-1) ... 320s Processing triggers for libc-bin (2.42-2ubuntu4) ... 320s Processing triggers for systemd (259-1ubuntu2) ... 320s Processing triggers for man-db (2.13.1-1) ... 321s Processing triggers for initramfs-tools (0.150ubuntu7) ... 321s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 321s Processing triggers for initramfs-tools (0.150ubuntu7) ... 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s Solving dependencies... 325s The following packages will be REMOVED: 325s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 325s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 325s After this operation, 21.3 MB disk space will be freed. 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 326s Removing python3.13 (3.13.11-1) ... 326s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 326s Removing python3.13-minimal (3.13.11-1) ... 327s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 327s Processing triggers for man-db (2.13.1-1) ... 327s Processing triggers for systemd (259-1ubuntu2) ... 327s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 327s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 327s Purging configuration files for python3.13-minimal (3.13.11-1) ... 330s autopkgtest [20:02:25]: rebooting testbed after setup commands that affected boot 401s Reading package lists... 402s Building dependency tree... 402s Reading state information... 402s Solving dependencies... 402s The following NEW packages will be installed: 402s autoconf automake autopoint autotools-dev build-essential cpp cpp-15 402s cpp-15-arm-linux-gnueabihf cpp-arm-linux-gnueabihf debhelper debugedit 402s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-15 402s g++-15-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-15 402s gcc-15-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 402s libarchive-zip-perl libasan8 libblas3 libc-dev-bin libc6-dev libcc1-0 402s libcrypt-dev libdebhelper-perl libdw1t64 libfile-stripnondeterminism-perl 402s libgcc-15-dev libgfortran5 libgomp1 libisl23 liblapack3 libmpc3 402s libpython3.13-minimal libpython3.13-stdlib libstdc++-15-dev libtool 402s libubsan1 linux-libc-dev m4 po-debconf pybuild-plugin-autopkgtest pyensembl 403s pylint python3-all python3-astroid python3-datacache python3-dill 403s python3-gtfparse python3-iniconfig python3-isort python3-logilab-common 403s python3-mccabe python3-memoized-property python3-mypy-extensions 403s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 403s python3-platformdirs python3-pluggy python3-pytest python3-pytz 403s python3-serializable python3-tomlkit python3-typechecks python3.13 403s python3.13-minimal rpcsvc-proto 403s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 403s Need to get 82.7 MB of archives. 403s After this operation, 279 MB of additional disk space will be used. 403s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-minimal armhf 3.13.11-1 [875 kB] 403s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-minimal armhf 3.13.11-1 [2055 kB] 403s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 403s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 403s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-11ubuntu1 [334 kB] 403s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 403s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 404s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13-stdlib armhf 3.13.11-1 [1960 kB] 404s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13 armhf 3.13.11-1 [758 kB] 404s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf m4 armhf 1.4.20-2 [212 kB] 404s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf autoconf all 2.72-3.1ubuntu1 [384 kB] 404s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf autotools-dev all 20240727.1 [43.4 kB] 404s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf automake all 1:1.18.1-3build1 [582 kB] 404s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf autopoint all 0.23.2-1 [620 kB] 404s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-2ubuntu4 [21.8 kB] 404s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.18.0-9.9 [1819 kB] 404s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 404s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1 [62.3 kB] 404s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-2ubuntu4 [1416 kB] 404s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1build1 [553 kB] 404s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 404s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-11ubuntu1 [10.1 MB] 404s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-11ubuntu1 [1032 B] 404s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 404s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 404s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-11ubuntu1 [43.5 kB] 404s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-11ubuntu1 [129 kB] 404s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-11ubuntu1 [2947 kB] 404s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-11ubuntu1 [1187 kB] 404s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-11ubuntu1 [898 kB] 404s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-11ubuntu1 [19.5 MB] 405s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-11ubuntu1 [497 kB] 405s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 405s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 405s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-11ubuntu1 [2638 kB] 405s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-11ubuntu1 [11.4 MB] 405s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15 armhf 15.2.0-11ubuntu1 [24.6 kB] 405s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [968 B] 405s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf g++ armhf 4:15.2.0-4ubuntu1 [1086 B] 405s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf build-essential armhf 12.12ubuntu2 [5256 B] 405s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libdebhelper-perl all 13.28ubuntu1 [97.4 kB] 405s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libtool all 2.5.4-9 [169 kB] 405s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf dh-autoreconf all 21 [12.5 kB] 405s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 405s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libfile-stripnondeterminism-perl all 1.15.0-1build1 [20.6 kB] 405s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf dh-strip-nondeterminism all 1.15.0-1build1 [5110 B] 405s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libdw1t64 armhf 0.194-1 [254 kB] 405s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf debugedit armhf 1:5.2-3 [48.9 kB] 405s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf dwz armhf 0.16-2 [114 kB] 405s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf gettext armhf 0.23.2-1 [1059 kB] 405s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf intltool-debian all 0.35.0+20060710.6build1 [24.1 kB] 405s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf po-debconf all 1.0.22 [215 kB] 405s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf debhelper all 13.28ubuntu1 [916 kB] 405s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf dh-python all 7.20251231 [122 kB] 405s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf pybuild-plugin-autopkgtest all 7.20251231 [1748 B] 405s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-astroid all 4.0.2-1ubuntu1 [172 kB] 405s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-isort all 7.0.0-1 [59.7 kB] 405s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mypy-extensions all 1.1.0-1 [6716 B] 405s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-logilab-common all 2.1.0-1 [95.7 kB] 405s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-dill all 0.4.0-1 [84.8 kB] 405s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mccabe all 0.7.0-1build1 [8926 B] 405s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.5.1-1 [17.1 kB] 406s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tomlkit all 0.13.3-2 [39.1 kB] 406s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf pylint all 4.0.4-1 [346 kB] 406s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 406s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 406s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 406s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-typechecks all 0.1.0+ds-4 [4562 B] 406s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-datacache all 1.4.1-2 [13.1 kB] 406s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 406s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-memoized-property all 1.0.3-2build1 [5328 B] 406s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-serializable all 0.4.1+ds-2 [8438 B] 406s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf pyensembl all 2.3.13-2 [37.2 kB] 406s Get:74 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-all armhf 3.14.2-1 [888 B] 406s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-2 [6962 B] 406s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-2 [21.1 kB] 406s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 9.0.2-2 [277 kB] 407s Fetched 82.7 MB in 3s (23.8 MB/s) 407s Selecting previously unselected package libpython3.13-minimal:armhf. 407s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 407s Preparing to unpack .../00-libpython3.13-minimal_3.13.11-1_armhf.deb ... 407s Unpacking libpython3.13-minimal:armhf (3.13.11-1) ... 407s Selecting previously unselected package python3.13-minimal. 407s Preparing to unpack .../01-python3.13-minimal_3.13.11-1_armhf.deb ... 407s Unpacking python3.13-minimal (3.13.11-1) ... 407s Selecting previously unselected package python3-numpy-dev:armhf. 407s Preparing to unpack .../02-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 407s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 407s Selecting previously unselected package libblas3:armhf. 407s Preparing to unpack .../03-libblas3_3.12.1-7ubuntu1_armhf.deb ... 407s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 407s Selecting previously unselected package libgfortran5:armhf. 407s Preparing to unpack .../04-libgfortran5_15.2.0-11ubuntu1_armhf.deb ... 407s Unpacking libgfortran5:armhf (15.2.0-11ubuntu1) ... 407s Selecting previously unselected package liblapack3:armhf. 407s Preparing to unpack .../05-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 407s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 407s Selecting previously unselected package python3-numpy. 407s Preparing to unpack .../06-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 407s Unpacking python3-numpy (1:2.3.5+ds-3) ... 407s Selecting previously unselected package libpython3.13-stdlib:armhf. 407s Preparing to unpack .../07-libpython3.13-stdlib_3.13.11-1_armhf.deb ... 407s Unpacking libpython3.13-stdlib:armhf (3.13.11-1) ... 407s Selecting previously unselected package python3.13. 408s Preparing to unpack .../08-python3.13_3.13.11-1_armhf.deb ... 408s Unpacking python3.13 (3.13.11-1) ... 408s Selecting previously unselected package m4. 408s Preparing to unpack .../09-m4_1.4.20-2_armhf.deb ... 408s Unpacking m4 (1.4.20-2) ... 408s Selecting previously unselected package autoconf. 408s Preparing to unpack .../10-autoconf_2.72-3.1ubuntu1_all.deb ... 408s Unpacking autoconf (2.72-3.1ubuntu1) ... 408s Selecting previously unselected package autotools-dev. 408s Preparing to unpack .../11-autotools-dev_20240727.1_all.deb ... 408s Unpacking autotools-dev (20240727.1) ... 408s Selecting previously unselected package automake. 408s Preparing to unpack .../12-automake_1%3a1.18.1-3build1_all.deb ... 408s Unpacking automake (1:1.18.1-3build1) ... 408s Selecting previously unselected package autopoint. 408s Preparing to unpack .../13-autopoint_0.23.2-1_all.deb ... 408s Unpacking autopoint (0.23.2-1) ... 408s Selecting previously unselected package libc-dev-bin. 408s Preparing to unpack .../14-libc-dev-bin_2.42-2ubuntu4_armhf.deb ... 408s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 408s Selecting previously unselected package linux-libc-dev:armhf. 408s Preparing to unpack .../15-linux-libc-dev_6.18.0-9.9_armhf.deb ... 408s Unpacking linux-libc-dev:armhf (6.18.0-9.9) ... 408s Selecting previously unselected package libcrypt-dev:armhf. 408s Preparing to unpack .../16-libcrypt-dev_1%3a4.5.1-1_armhf.deb ... 408s Unpacking libcrypt-dev:armhf (1:4.5.1-1) ... 408s Selecting previously unselected package rpcsvc-proto. 408s Preparing to unpack .../17-rpcsvc-proto_1.4.3-1_armhf.deb ... 408s Unpacking rpcsvc-proto (1.4.3-1) ... 408s Selecting previously unselected package libc6-dev:armhf. 408s Preparing to unpack .../18-libc6-dev_2.42-2ubuntu4_armhf.deb ... 408s Unpacking libc6-dev:armhf (2.42-2ubuntu4) ... 408s Selecting previously unselected package libisl23:armhf. 408s Preparing to unpack .../19-libisl23_0.27-1build1_armhf.deb ... 408s Unpacking libisl23:armhf (0.27-1build1) ... 408s Selecting previously unselected package libmpc3:armhf. 408s Preparing to unpack .../20-libmpc3_1.3.1-2_armhf.deb ... 408s Unpacking libmpc3:armhf (1.3.1-2) ... 408s Selecting previously unselected package cpp-15-arm-linux-gnueabihf. 408s Preparing to unpack .../21-cpp-15-arm-linux-gnueabihf_15.2.0-11ubuntu1_armhf.deb ... 408s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package cpp-15. 409s Preparing to unpack .../22-cpp-15_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking cpp-15 (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package cpp-arm-linux-gnueabihf. 409s Preparing to unpack .../23-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 409s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 409s Selecting previously unselected package cpp. 409s Preparing to unpack .../24-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ... 409s Unpacking cpp (4:15.2.0-4ubuntu1) ... 409s Selecting previously unselected package libcc1-0:armhf. 409s Preparing to unpack .../25-libcc1-0_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking libcc1-0:armhf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package libgomp1:armhf. 409s Preparing to unpack .../26-libgomp1_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking libgomp1:armhf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package libasan8:armhf. 409s Preparing to unpack .../27-libasan8_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking libasan8:armhf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package libubsan1:armhf. 409s Preparing to unpack .../28-libubsan1_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking libubsan1:armhf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package libgcc-15-dev:armhf. 409s Preparing to unpack .../29-libgcc-15-dev_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking libgcc-15-dev:armhf (15.2.0-11ubuntu1) ... 409s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 409s Preparing to unpack .../30-gcc-15-arm-linux-gnueabihf_15.2.0-11ubuntu1_armhf.deb ... 409s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 410s Selecting previously unselected package gcc-15. 410s Preparing to unpack .../31-gcc-15_15.2.0-11ubuntu1_armhf.deb ... 410s Unpacking gcc-15 (15.2.0-11ubuntu1) ... 410s Selecting previously unselected package gcc-arm-linux-gnueabihf. 410s Preparing to unpack .../32-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 410s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 410s Selecting previously unselected package gcc. 410s Preparing to unpack .../33-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ... 410s Unpacking gcc (4:15.2.0-4ubuntu1) ... 410s Selecting previously unselected package libstdc++-15-dev:armhf. 410s Preparing to unpack .../34-libstdc++-15-dev_15.2.0-11ubuntu1_armhf.deb ... 410s Unpacking libstdc++-15-dev:armhf (15.2.0-11ubuntu1) ... 410s Selecting previously unselected package g++-15-arm-linux-gnueabihf. 410s Preparing to unpack .../35-g++-15-arm-linux-gnueabihf_15.2.0-11ubuntu1_armhf.deb ... 410s Unpacking g++-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 410s Selecting previously unselected package g++-15. 410s Preparing to unpack .../36-g++-15_15.2.0-11ubuntu1_armhf.deb ... 410s Unpacking g++-15 (15.2.0-11ubuntu1) ... 410s Selecting previously unselected package g++-arm-linux-gnueabihf. 410s Preparing to unpack .../37-g++-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 410s Unpacking g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 410s Selecting previously unselected package g++. 410s Preparing to unpack .../38-g++_4%3a15.2.0-4ubuntu1_armhf.deb ... 410s Unpacking g++ (4:15.2.0-4ubuntu1) ... 410s Selecting previously unselected package build-essential. 410s Preparing to unpack .../39-build-essential_12.12ubuntu2_armhf.deb ... 410s Unpacking build-essential (12.12ubuntu2) ... 410s Selecting previously unselected package libdebhelper-perl. 410s Preparing to unpack .../40-libdebhelper-perl_13.28ubuntu1_all.deb ... 410s Unpacking libdebhelper-perl (13.28ubuntu1) ... 410s Selecting previously unselected package libtool. 410s Preparing to unpack .../41-libtool_2.5.4-9_all.deb ... 410s Unpacking libtool (2.5.4-9) ... 410s Selecting previously unselected package dh-autoreconf. 410s Preparing to unpack .../42-dh-autoreconf_21_all.deb ... 410s Unpacking dh-autoreconf (21) ... 410s Selecting previously unselected package libarchive-zip-perl. 410s Preparing to unpack .../43-libarchive-zip-perl_1.68-1_all.deb ... 410s Unpacking libarchive-zip-perl (1.68-1) ... 410s Selecting previously unselected package libfile-stripnondeterminism-perl. 410s Preparing to unpack .../44-libfile-stripnondeterminism-perl_1.15.0-1build1_all.deb ... 410s Unpacking libfile-stripnondeterminism-perl (1.15.0-1build1) ... 410s Selecting previously unselected package dh-strip-nondeterminism. 410s Preparing to unpack .../45-dh-strip-nondeterminism_1.15.0-1build1_all.deb ... 410s Unpacking dh-strip-nondeterminism (1.15.0-1build1) ... 411s Selecting previously unselected package libdw1t64:armhf. 411s Preparing to unpack .../46-libdw1t64_0.194-1_armhf.deb ... 411s Unpacking libdw1t64:armhf (0.194-1) ... 411s Selecting previously unselected package debugedit. 411s Preparing to unpack .../47-debugedit_1%3a5.2-3_armhf.deb ... 411s Unpacking debugedit (1:5.2-3) ... 411s Selecting previously unselected package dwz. 411s Preparing to unpack .../48-dwz_0.16-2_armhf.deb ... 411s Unpacking dwz (0.16-2) ... 411s Selecting previously unselected package gettext. 411s Preparing to unpack .../49-gettext_0.23.2-1_armhf.deb ... 411s Unpacking gettext (0.23.2-1) ... 411s Selecting previously unselected package intltool-debian. 411s Preparing to unpack .../50-intltool-debian_0.35.0+20060710.6build1_all.deb ... 411s Unpacking intltool-debian (0.35.0+20060710.6build1) ... 411s Selecting previously unselected package po-debconf. 411s Preparing to unpack .../51-po-debconf_1.0.22_all.deb ... 411s Unpacking po-debconf (1.0.22) ... 411s Selecting previously unselected package debhelper. 411s Preparing to unpack .../52-debhelper_13.28ubuntu1_all.deb ... 411s Unpacking debhelper (13.28ubuntu1) ... 411s Selecting previously unselected package dh-python. 411s Preparing to unpack .../53-dh-python_7.20251231_all.deb ... 411s Unpacking dh-python (7.20251231) ... 411s Selecting previously unselected package pybuild-plugin-autopkgtest. 411s Preparing to unpack .../54-pybuild-plugin-autopkgtest_7.20251231_all.deb ... 411s Unpacking pybuild-plugin-autopkgtest (7.20251231) ... 411s Selecting previously unselected package python3-astroid. 411s Preparing to unpack .../55-python3-astroid_4.0.2-1ubuntu1_all.deb ... 411s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 411s Selecting previously unselected package python3-isort. 411s Preparing to unpack .../56-python3-isort_7.0.0-1_all.deb ... 411s Unpacking python3-isort (7.0.0-1) ... 411s Selecting previously unselected package python3-mypy-extensions. 411s Preparing to unpack .../57-python3-mypy-extensions_1.1.0-1_all.deb ... 411s Unpacking python3-mypy-extensions (1.1.0-1) ... 411s Selecting previously unselected package python3-logilab-common. 411s Preparing to unpack .../58-python3-logilab-common_2.1.0-1_all.deb ... 411s Unpacking python3-logilab-common (2.1.0-1) ... 411s Selecting previously unselected package python3-dill. 411s Preparing to unpack .../59-python3-dill_0.4.0-1_all.deb ... 411s Unpacking python3-dill (0.4.0-1) ... 411s Selecting previously unselected package python3-mccabe. 411s Preparing to unpack .../60-python3-mccabe_0.7.0-1build1_all.deb ... 411s Unpacking python3-mccabe (0.7.0-1build1) ... 411s Selecting previously unselected package python3-platformdirs. 411s Preparing to unpack .../61-python3-platformdirs_4.5.1-1_all.deb ... 411s Unpacking python3-platformdirs (4.5.1-1) ... 411s Selecting previously unselected package python3-tomlkit. 411s Preparing to unpack .../62-python3-tomlkit_0.13.3-2_all.deb ... 411s Unpacking python3-tomlkit (0.13.3-2) ... 411s Selecting previously unselected package pylint. 411s Preparing to unpack .../63-pylint_4.0.4-1_all.deb ... 411s Unpacking pylint (4.0.4-1) ... 411s Selecting previously unselected package python3-pytz. 411s Preparing to unpack .../64-python3-pytz_2025.2-5_all.deb ... 411s Unpacking python3-pytz (2025.2-5) ... 411s Selecting previously unselected package python3-pandas-lib:armhf. 411s Preparing to unpack .../65-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 411s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 412s Selecting previously unselected package python3-pandas. 412s Preparing to unpack .../66-python3-pandas_2.3.3+dfsg-3_all.deb ... 412s Unpacking python3-pandas (2.3.3+dfsg-3) ... 412s Selecting previously unselected package python3-typechecks. 412s Preparing to unpack .../67-python3-typechecks_0.1.0+ds-4_all.deb ... 412s Unpacking python3-typechecks (0.1.0+ds-4) ... 412s Selecting previously unselected package python3-datacache. 412s Preparing to unpack .../68-python3-datacache_1.4.1-2_all.deb ... 412s Unpacking python3-datacache (1.4.1-2) ... 412s Selecting previously unselected package python3-gtfparse. 412s Preparing to unpack .../69-python3-gtfparse_1.3.0+ds-2_all.deb ... 412s Unpacking python3-gtfparse (1.3.0+ds-2) ... 412s Selecting previously unselected package python3-memoized-property. 412s Preparing to unpack .../70-python3-memoized-property_1.0.3-2build1_all.deb ... 412s Unpacking python3-memoized-property (1.0.3-2build1) ... 412s Selecting previously unselected package python3-serializable. 412s Preparing to unpack .../71-python3-serializable_0.4.1+ds-2_all.deb ... 412s Unpacking python3-serializable (0.4.1+ds-2) ... 413s Selecting previously unselected package pyensembl. 413s Preparing to unpack .../72-pyensembl_2.3.13-2_all.deb ... 413s Unpacking pyensembl (2.3.13-2) ... 413s Selecting previously unselected package python3-all. 413s Preparing to unpack .../73-python3-all_3.14.2-1_armhf.deb ... 413s Unpacking python3-all (3.14.2-1) ... 413s Selecting previously unselected package python3-iniconfig. 413s Preparing to unpack .../74-python3-iniconfig_2.1.0-2_all.deb ... 413s Unpacking python3-iniconfig (2.1.0-2) ... 413s Selecting previously unselected package python3-pluggy. 413s Preparing to unpack .../75-python3-pluggy_1.6.0-2_all.deb ... 413s Unpacking python3-pluggy (1.6.0-2) ... 413s Selecting previously unselected package python3-pytest. 413s Preparing to unpack .../76-python3-pytest_9.0.2-2_all.deb ... 413s Unpacking python3-pytest (9.0.2-2) ... 413s Setting up dh-python (7.20251231) ... 413s Setting up python3-iniconfig (2.1.0-2) ... 413s Setting up python3-typechecks (0.1.0+ds-4) ... 414s Setting up python3-memoized-property (1.0.3-2build1) ... 414s Setting up libarchive-zip-perl (1.68-1) ... 414s Setting up python3-mypy-extensions (1.1.0-1) ... 414s Setting up libdebhelper-perl (13.28ubuntu1) ... 414s Setting up linux-libc-dev:armhf (6.18.0-9.9) ... 414s Setting up m4 (1.4.20-2) ... 414s Setting up python3-pytz (2025.2-5) ... 414s Setting up python3-serializable (0.4.1+ds-2) ... 414s Setting up libgomp1:armhf (15.2.0-11ubuntu1) ... 414s Setting up python3-platformdirs (4.5.1-1) ... 415s Setting up libdw1t64:armhf (0.194-1) ... 415s Setting up libpython3.13-minimal:armhf (3.13.11-1) ... 415s Setting up autotools-dev (20240727.1) ... 415s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 415s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 415s Setting up rpcsvc-proto (1.4.3-1) ... 415s Setting up python3-dill (0.4.0-1) ... 415s Setting up libmpc3:armhf (1.3.1-2) ... 415s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 415s Setting up autopoint (0.23.2-1) ... 415s Setting up libgfortran5:armhf (15.2.0-11ubuntu1) ... 415s Setting up autoconf (2.72-3.1ubuntu1) ... 415s Setting up python3-isort (7.0.0-1) ... 416s Setting up python3-pluggy (1.6.0-2) ... 416s Setting up libubsan1:armhf (15.2.0-11ubuntu1) ... 416s Setting up dwz (0.16-2) ... 416s Setting up python3-astroid (4.0.2-1ubuntu1) ... 417s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 417s Setting up libasan8:armhf (15.2.0-11ubuntu1) ... 417s Setting up debugedit (1:5.2-3) ... 417s Setting up python3.13-minimal (3.13.11-1) ... 418s Setting up python3-mccabe (0.7.0-1build1) ... 418s Setting up libisl23:armhf (0.27-1build1) ... 418s Setting up libc-dev-bin (2.42-2ubuntu4) ... 418s Setting up python3-tomlkit (0.13.3-2) ... 418s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 418s Setting up libpython3.13-stdlib:armhf (3.13.11-1) ... 418s Setting up libcc1-0:armhf (15.2.0-11ubuntu1) ... 418s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 418s Setting up automake (1:1.18.1-3build1) ... 418s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 418s Setting up libfile-stripnondeterminism-perl (1.15.0-1build1) ... 418s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 418s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 418s Setting up gettext (0.23.2-1) ... 418s Setting up libgcc-15-dev:armhf (15.2.0-11ubuntu1) ... 418s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 418s Setting up python3-logilab-common (2.1.0-1) ... 419s Setting up python3.13 (3.13.11-1) ... 420s Setting up python3-pytest (9.0.2-2) ... 421s Setting up python3-all (3.14.2-1) ... 421s Setting up intltool-debian (0.35.0+20060710.6build1) ... 421s Setting up python3-numpy (1:2.3.5+ds-3) ... 425s Setting up dh-strip-nondeterminism (1.15.0-1build1) ... 425s Setting up cpp-15 (15.2.0-11ubuntu1) ... 425s Setting up cpp (4:15.2.0-4ubuntu1) ... 425s Setting up libc6-dev:armhf (2.42-2ubuntu4) ... 425s Setting up pylint (4.0.4-1) ... 427s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 427s Setting up po-debconf (1.0.22) ... 427s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 427s Setting up gcc-15 (15.2.0-11ubuntu1) ... 427s Setting up libstdc++-15-dev:armhf (15.2.0-11ubuntu1) ... 427s Setting up python3-pandas (2.3.3+dfsg-3) ... 439s Setting up python3-datacache (1.4.1-2) ... 439s Setting up libtool (2.5.4-9) ... 439s Setting up python3-gtfparse (1.3.0+ds-2) ... 439s Setting up g++-15-arm-linux-gnueabihf (15.2.0-11ubuntu1) ... 439s Setting up gcc (4:15.2.0-4ubuntu1) ... 439s Setting up dh-autoreconf (21) ... 439s Setting up pyensembl (2.3.13-2) ... 440s Setting up g++-15 (15.2.0-11ubuntu1) ... 440s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 440s Setting up debhelper (13.28ubuntu1) ... 440s Setting up g++ (4:15.2.0-4ubuntu1) ... 440s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 440s Setting up build-essential (12.12ubuntu2) ... 440s Setting up pybuild-plugin-autopkgtest (7.20251231) ... 440s Processing triggers for man-db (2.13.1-1) ... 441s Processing triggers for install-info (7.2-5) ... 441s Processing triggers for libc-bin (2.42-2ubuntu4) ... 441s Processing triggers for systemd (259-1ubuntu2) ... 456s autopkgtest [20:04:31]: test pybuild-autopkgtest: pybuild-autopkgtest 456s autopkgtest [20:04:31]: test pybuild-autopkgtest: [----------------------- 459s pybuild-autopkgtest 459s I: pybuild base:384: cd /tmp/autopkgtest.9sNrot/autopkgtest_tmp/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 460s ============================= test session starts ============================== 460s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 460s cachedir: .pytest_cache 460s rootdir: /tmp/autopkgtest.9sNrot/autopkgtest_tmp/build 460s plugins: typeguard-4.4.4 461s collecting ... collected 126 items / 98 deselected / 28 selected 461s 461s tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] 461s tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] 461s tests/test_locus.py::test_locus_overlaps PASSED [ 10%] 461s tests/test_locus.py::test_locus_contains PASSED [ 14%] 461s tests/test_locus.py::test_position_offset PASSED [ 17%] 461s tests/test_locus.py::test_range_offset PASSED [ 21%] 461s tests/test_locus.py::test_locus_distance PASSED [ 25%] 461s tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] 461s tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] 461s tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] 461s tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] 461s tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] 461s tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] 461s tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] 461s tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] 461s tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] 461s tests/test_release_versions.py::test_version_is_none PASSED [ 60%] 461s tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] 461s tests/test_release_versions.py::test_int_version PASSED [ 67%] 461s tests/test_release_versions.py::test_str_version PASSED [ 71%] 461s tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] 461s tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] 461s tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] 461s tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] 461s tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] 461s tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] 461s tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] 462s tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] 462s 462s =============================== warnings summary =============================== 462s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 462s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 462s import pkg_resources 462s 462s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 462s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 462s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 462s declare_namespace(pkg) 462s 462s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 462s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 462s release_group = root_group.add_argument_group() 462s 462s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 462s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 462s path_group = root_group.add_argument_group() 462s 462s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 462s ================ 28 passed, 98 deselected, 4 warnings in 1.59s ================= 462s I: pybuild base:384: cd /tmp/autopkgtest.9sNrot/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 462s ============================= test session starts ============================== 462s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 462s cachedir: .pytest_cache 462s rootdir: /tmp/autopkgtest.9sNrot/autopkgtest_tmp/build 462s plugins: typeguard-4.4.4 464s collecting ... collected 125 items / 1 error / 98 deselected / 27 selected 464s 464s ==================================== ERRORS ==================================== 464s _____________________ ERROR collecting tests/test_shell.py _____________________ 464s tests/test_shell.py:1: in 464s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 464s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 464s release_group = root_group.add_argument_group() 464s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 464s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 464s raise ValueError('argument groups cannot be nested') 464s E ValueError: argument groups cannot be nested 464s =============================== warnings summary =============================== 464s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 464s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 464s import pkg_resources 464s 464s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 464s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 464s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 464s declare_namespace(pkg) 464s 464s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 464s =========================== short test summary info ============================ 464s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 464s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 464s ================= 98 deselected, 2 warnings, 1 error in 1.13s ================== 464s E: pybuild pybuild:483: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.9sNrot/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 464s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.14" returned exit code 13 464s make: *** [/tmp/CXb3T06Ti4/run:4: pybuild-autopkgtest] Error 25 464s pybuild-autopkgtest: error: /tmp/CXb3T06Ti4/run pybuild-autopkgtest returned exit code 2 464s autopkgtest [20:04:39]: test pybuild-autopkgtest: -----------------------] 470s pybuild-autopkgtest FAIL non-zero exit status 25 470s autopkgtest [20:04:45]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 474s autopkgtest [20:04:49]: @@@@@@@@@@@@@@@@@@@@ summary 474s run-unit-test FAIL non-zero exit status 2 474s pybuild-autopkgtest FAIL non-zero exit status 25