0s autopkgtest [19:47:30]: starting date and time: 2025-11-15 19:47:30+0000 0s autopkgtest [19:47:30]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [19:47:30]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8s32dn8g/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:requests --apt-upgrade ncbi-acc-download --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 -- lxd -r lxd-armhf-10.145.243.227 lxd-armhf-10.145.243.227:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [19:47:51]: testbed dpkg architecture: armhf 23s autopkgtest [19:47:53]: testbed apt version: 3.1.11 27s autopkgtest [19:47:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [19:47:59]: testbed release detected to be: None 36s autopkgtest [19:48:06]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [87.8 kB] 39s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 39s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 39s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [821 kB] 39s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 39s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 39s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [78.5 kB] 39s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [136 kB] 39s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B] 39s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [506 kB] 39s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9140 B] 39s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 40s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1404 kB] 40s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1369 kB] 40s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 40s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [184 kB] 44s Fetched 41.2 MB in 6s (7322 kB/s) 45s Reading package lists... 51s autopkgtest [19:48:21]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 55s The following packages will be upgraded: 55s python3-requests python3-rpds-py 55s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 396 kB of archives. 55s After this operation, 727 kB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 56s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3-rpds-py armhf 0.27.1-2ubuntu1 [343 kB] 57s Fetched 396 kB in 1s (791 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65903 files and directories currently installed.) 57s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 57s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 57s Preparing to unpack .../python3-rpds-py_0.27.1-2ubuntu1_armhf.deb ... 57s Unpacking python3-rpds-py (0.27.1-2ubuntu1) over (0.21.0-2ubuntu2) ... 57s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 57s Setting up python3-rpds-py (0.27.1-2ubuntu1) ... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Solving dependencies... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [19:48:34]: rebooting testbed after setup commands that affected boot 104s autopkgtest [19:49:14]: testbed running kernel: Linux 6.8.0-86-generic #87~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 29 09:26:46 UTC 2 129s autopkgtest [19:49:39]: @@@@@@@@@@@@@@@@@@@@ apt-source ncbi-acc-download 140s Get:1 http://ftpmaster.internal/ubuntu resolute/universe ncbi-acc-download 0.2.8-3 (dsc) [2434 B] 140s Get:2 http://ftpmaster.internal/ubuntu resolute/universe ncbi-acc-download 0.2.8-3 (tar) [20.9 kB] 140s Get:3 http://ftpmaster.internal/ubuntu resolute/universe ncbi-acc-download 0.2.8-3 (diff) [4420 B] 140s gpgv: Signature made Thu Aug 1 23:03:26 2024 UTC 140s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 140s gpgv: issuer "tille@debian.org" 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./ncbi-acc-download_0.2.8-3.dsc: no acceptable signature found 140s autopkgtest [19:49:50]: testing package ncbi-acc-download version 0.2.8-3 143s autopkgtest [19:49:53]: build not needed 145s autopkgtest [19:49:55]: test run-unit-test: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Solving dependencies... 148s The following NEW packages will be installed: 148s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 148s libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 148s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 148s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 148s libjs-jquery-tablesorter libjs-jquery-throttle-debounce liblapack3 148s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 148s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 148s libxrender1 ncbi-acc-download python3-all python3-biopython python3-cairo 148s python3-charset-normalizer python3-coverage python3-freetype 148s python3-iniconfig python3-numpy python3-numpy-dev python3-pil python3-pluggy 148s python3-pytest python3-pytest-cov python3-pytest-mock python3-reportlab 148s python3-requests-mock python3-rlpycairo sgml-base w3c-sgml-lib x11-common 148s xfonts-encodings xfonts-utils xml-core 148s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 26.2 MB of archives. 148s After this operation, 78.5 MB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.2.4+ds-1ubuntu1 [141 kB] 149s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 149s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-7ubuntu1 [334 kB] 149s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 149s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.2.4+ds-1ubuntu1 [3724 kB] 149s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 149s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 149s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 149s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 149s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 149s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 149s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 149s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 149s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 149s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 149s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 149s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 149s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 149s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 149s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-7ubuntu1 [129 kB] 149s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 149s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 149s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 149s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 149s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 149s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 149s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-metadata all 12-4 [6582 B] 149s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 149s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 149s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 150s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 150s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 150s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 150s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 150s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 150s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 150s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 150s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 150s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf ncbi-acc-download all 0.2.8-3 [13.3 kB] 150s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.7-1 [884 B] 150s Get:41 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.3-1 [167 kB] 150s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.3-2.1 [174 kB] 150s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 11.3.0-1ubuntu2 [465 kB] 150s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 150s Get:45 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 150s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 150s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.4-2 [1147 kB] 150s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 150s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19 [20.3 kB] 150s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 150s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.85+dfsg-4 [1692 kB] 150s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-coverage armhf 7.8.2+dfsg1-1 [156 kB] 150s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-1 [6840 B] 150s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-1 [21.0 kB] 150s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 8.3.5-2 [252 kB] 150s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-hotkeys all 0.2.0-1 [13.3 kB] 150s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 150s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest-cov all 5.0.0-1 [21.3 kB] 150s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest-mock all 3.15.1-1 [11.9 kB] 150s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-requests-mock all 1.12.1-3 [17.8 kB] 151s Fetched 26.2 MB in 2s (15.8 MB/s) 151s Selecting previously unselected package python3-numpy-dev:armhf. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 151s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 151s Unpacking python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 151s Selecting previously unselected package libblas3:armhf. 151s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 151s Unpacking libblas3:armhf (3.12.1-7) ... 151s Selecting previously unselected package libgfortran5:armhf. 151s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_armhf.deb ... 151s Unpacking libgfortran5:armhf (15.2.0-7ubuntu1) ... 151s Selecting previously unselected package liblapack3:armhf. 151s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 151s Unpacking liblapack3:armhf (3.12.1-7) ... 151s Selecting previously unselected package python3-numpy. 151s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 151s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 151s Selecting previously unselected package libfontenc1:armhf. 151s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 151s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 151s Selecting previously unselected package libfreetype6:armhf. 151s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 151s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 152s Selecting previously unselected package x11-common. 152s Preparing to unpack .../07-x11-common_1%3a7.7+24ubuntu1_all.deb ... 152s Unpacking x11-common (1:7.7+24ubuntu1) ... 152s Selecting previously unselected package xfonts-encodings. 152s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 152s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 152s Selecting previously unselected package xfonts-utils. 152s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_armhf.deb ... 152s Unpacking xfonts-utils (1:7.7+7) ... 152s Selecting previously unselected package fonts-urw-base35. 152s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 152s Unpacking fonts-urw-base35 (20200910-8) ... 152s Selecting previously unselected package fontconfig-config. 152s Preparing to unpack .../11-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 153s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 153s Selecting previously unselected package libfontconfig1:armhf. 153s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 153s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 153s Selecting previously unselected package libpixman-1-0:armhf. 153s Preparing to unpack .../13-libpixman-1-0_0.46.4-1_armhf.deb ... 153s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 153s Selecting previously unselected package libxcb-render0:armhf. 153s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_armhf.deb ... 153s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 153s Selecting previously unselected package libxcb-shm0:armhf. 153s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_armhf.deb ... 153s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 153s Selecting previously unselected package libxrender1:armhf. 153s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_armhf.deb ... 153s Unpacking libxrender1:armhf (1:0.9.12-1) ... 153s Selecting previously unselected package libcairo2:armhf. 153s Preparing to unpack .../17-libcairo2_1.18.4-1build1_armhf.deb ... 153s Unpacking libcairo2:armhf (1.18.4-1build1) ... 153s Selecting previously unselected package libdeflate0:armhf. 153s Preparing to unpack .../18-libdeflate0_1.23-2_armhf.deb ... 153s Unpacking libdeflate0:armhf (1.23-2) ... 153s Selecting previously unselected package libgomp1:armhf. 153s Preparing to unpack .../19-libgomp1_15.2.0-7ubuntu1_armhf.deb ... 153s Unpacking libgomp1:armhf (15.2.0-7ubuntu1) ... 153s Selecting previously unselected package libgraphite2-3:armhf. 153s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 153s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 153s Selecting previously unselected package libharfbuzz0b:armhf. 153s Preparing to unpack .../21-libharfbuzz0b_12.1.0-1_armhf.deb ... 153s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 153s Selecting previously unselected package libimagequant0:armhf. 153s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_armhf.deb ... 153s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 153s Selecting previously unselected package libjpeg-turbo8:armhf. 153s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 153s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 153s Selecting previously unselected package libjpeg8:armhf. 153s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_armhf.deb ... 153s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 153s Selecting previously unselected package libjs-jquery. 153s Preparing to unpack .../25-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 153s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 153s Selecting previously unselected package libjs-jquery-metadata. 153s Preparing to unpack .../26-libjs-jquery-metadata_12-4_all.deb ... 153s Unpacking libjs-jquery-metadata (12-4) ... 154s Selecting previously unselected package libjs-jquery-tablesorter. 154s Preparing to unpack .../27-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 154s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 154s Selecting previously unselected package libjs-jquery-throttle-debounce. 154s Preparing to unpack .../28-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 154s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 154s Selecting previously unselected package liblcms2-2:armhf. 154s Preparing to unpack .../29-liblcms2-2_2.16-2_armhf.deb ... 154s Unpacking liblcms2-2:armhf (2.16-2) ... 154s Selecting previously unselected package liblerc4:armhf. 154s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 154s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 154s Selecting previously unselected package libraqm0:armhf. 154s Preparing to unpack .../31-libraqm0_0.10.3-1_armhf.deb ... 154s Unpacking libraqm0:armhf (0.10.3-1) ... 154s Selecting previously unselected package libsharpyuv0:armhf. 154s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_armhf.deb ... 154s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 154s Selecting previously unselected package libjbig0:armhf. 154s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 154s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 154s Selecting previously unselected package libwebp7:armhf. 154s Preparing to unpack .../34-libwebp7_1.5.0-0.1_armhf.deb ... 154s Unpacking libwebp7:armhf (1.5.0-0.1) ... 154s Selecting previously unselected package libtiff6:armhf. 154s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 154s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 154s Selecting previously unselected package libwebpdemux2:armhf. 154s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_armhf.deb ... 154s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 154s Selecting previously unselected package libwebpmux3:armhf. 154s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_armhf.deb ... 154s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 154s Selecting previously unselected package ncbi-acc-download. 154s Preparing to unpack .../38-ncbi-acc-download_0.2.8-3_all.deb ... 154s Unpacking ncbi-acc-download (0.2.8-3) ... 154s Selecting previously unselected package python3-all. 154s Preparing to unpack .../39-python3-all_3.13.7-1_armhf.deb ... 154s Unpacking python3-all (3.13.7-1) ... 154s Selecting previously unselected package python3-charset-normalizer. 154s Preparing to unpack .../40-python3-charset-normalizer_3.4.3-1_armhf.deb ... 154s Unpacking python3-charset-normalizer (3.4.3-1) ... 154s Selecting previously unselected package libopenjp2-7:armhf. 154s Preparing to unpack .../41-libopenjp2-7_2.5.3-2.1_armhf.deb ... 154s Unpacking libopenjp2-7:armhf (2.5.3-2.1) ... 154s Selecting previously unselected package python3-pil:armhf. 154s Preparing to unpack .../42-python3-pil_11.3.0-1ubuntu2_armhf.deb ... 154s Unpacking python3-pil:armhf (11.3.0-1ubuntu2) ... 155s Selecting previously unselected package python3-cairo. 155s Preparing to unpack .../43-python3-cairo_1.27.0-2build1_armhf.deb ... 155s Unpacking python3-cairo (1.27.0-2build1) ... 155s Selecting previously unselected package python3-freetype. 155s Preparing to unpack .../44-python3-freetype_2.5.1-2_all.deb ... 155s Unpacking python3-freetype (2.5.1-2) ... 155s Selecting previously unselected package python3-rlpycairo. 155s Preparing to unpack .../45-python3-rlpycairo_0.3.0-4_all.deb ... 155s Unpacking python3-rlpycairo (0.3.0-4) ... 155s Selecting previously unselected package python3-reportlab. 155s Preparing to unpack .../46-python3-reportlab_4.4.4-2_all.deb ... 155s Unpacking python3-reportlab (4.4.4-2) ... 155s Selecting previously unselected package sgml-base. 155s Preparing to unpack .../47-sgml-base_1.31+nmu1_all.deb ... 155s Unpacking sgml-base (1.31+nmu1) ... 155s Selecting previously unselected package xml-core. 155s Preparing to unpack .../48-xml-core_0.19_all.deb ... 155s Unpacking xml-core (0.19) ... 155s Selecting previously unselected package w3c-sgml-lib. 155s Preparing to unpack .../49-w3c-sgml-lib_1.3-3_all.deb ... 155s Unpacking w3c-sgml-lib (1.3-3) ... 155s Selecting previously unselected package python3-biopython. 155s Preparing to unpack .../50-python3-biopython_1.85+dfsg-4_armhf.deb ... 155s Unpacking python3-biopython (1.85+dfsg-4) ... 155s Selecting previously unselected package python3-coverage. 155s Preparing to unpack .../51-python3-coverage_7.8.2+dfsg1-1_armhf.deb ... 155s Unpacking python3-coverage (7.8.2+dfsg1-1) ... 155s Selecting previously unselected package python3-iniconfig. 155s Preparing to unpack .../52-python3-iniconfig_2.1.0-1_all.deb ... 155s Unpacking python3-iniconfig (2.1.0-1) ... 156s Selecting previously unselected package python3-pluggy. 156s Preparing to unpack .../53-python3-pluggy_1.6.0-1_all.deb ... 156s Unpacking python3-pluggy (1.6.0-1) ... 156s Selecting previously unselected package python3-pytest. 156s Preparing to unpack .../54-python3-pytest_8.3.5-2_all.deb ... 156s Unpacking python3-pytest (8.3.5-2) ... 156s Selecting previously unselected package libjs-jquery-hotkeys. 156s Preparing to unpack .../55-libjs-jquery-hotkeys_0.2.0-1_all.deb ... 156s Unpacking libjs-jquery-hotkeys (0.2.0-1) ... 156s Selecting previously unselected package libjs-jquery-isonscreen. 156s Preparing to unpack .../56-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 156s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 156s Selecting previously unselected package python3-pytest-cov. 156s Preparing to unpack .../57-python3-pytest-cov_5.0.0-1_all.deb ... 156s Unpacking python3-pytest-cov (5.0.0-1) ... 156s Selecting previously unselected package python3-pytest-mock. 156s Preparing to unpack .../58-python3-pytest-mock_3.15.1-1_all.deb ... 156s Unpacking python3-pytest-mock (3.15.1-1) ... 156s Selecting previously unselected package python3-requests-mock. 156s Preparing to unpack .../59-python3-requests-mock_1.12.1-3_all.deb ... 156s Unpacking python3-requests-mock (1.12.1-3) ... 156s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 156s Setting up liblcms2-2:armhf (2.16-2) ... 156s Setting up python3-iniconfig (2.1.0-1) ... 156s Setting up libpixman-1-0:armhf (0.46.4-1) ... 156s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 156s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 156s Setting up libxrender1:armhf (1:0.9.12-1) ... 156s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 156s Setting up python3-charset-normalizer (3.4.3-1) ... 156s Setting up x11-common (1:7.7+24ubuntu1) ... 157s Setting up libdeflate0:armhf (1.23-2) ... 157s Setting up python3-all (3.13.7-1) ... 157s Setting up python3-coverage (7.8.2+dfsg1-1) ... 157s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 157s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 157s Setting up libgomp1:armhf (15.2.0-7ubuntu1) ... 157s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 157s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 157s Setting up libblas3:armhf (3.12.1-7) ... 157s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 157s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 157s Setting up python3-requests-mock (1.12.1-3) ... 158s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 158s Setting up libimagequant0:armhf (2.18.0-1build1) ... 158s Setting up python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 158s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 158s Setting up libgfortran5:armhf (15.2.0-7ubuntu1) ... 158s Setting up python3-pluggy (1.6.0-1) ... 158s Setting up libwebp7:armhf (1.5.0-0.1) ... 158s Setting up libopenjp2-7:armhf (2.5.3-2.1) ... 158s Setting up ncbi-acc-download (0.2.8-3) ... 158s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 158s Setting up sgml-base (1.31+nmu1) ... 158s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 158s Setting up libjs-jquery-hotkeys (0.2.0-1) ... 158s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 158s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 158s Setting up liblapack3:armhf (3.12.1-7) ... 158s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 158s Setting up python3-pytest (8.3.5-2) ... 159s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 159s Setting up python3-freetype (2.5.1-2) ... 159s Setting up xfonts-utils (1:7.7+7) ... 159s Setting up libjs-jquery-metadata (12-4) ... 159s Setting up libraqm0:armhf (0.10.3-1) ... 159s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 159s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 161s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 161s Setting up python3-pytest-mock (3.15.1-1) ... 161s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 161s Setting up xml-core (0.19) ... 162s Setting up python3-pytest-cov (5.0.0-1) ... 162s Setting up fonts-urw-base35 (20200910-8) ... 162s Setting up python3-pil:armhf (11.3.0-1ubuntu2) ... 163s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 163s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 163s Setting up libcairo2:armhf (1.18.4-1build1) ... 163s Setting up python3-cairo (1.27.0-2build1) ... 164s Setting up python3-rlpycairo (0.3.0-4) ... 164s Setting up python3-reportlab (4.4.4-2) ... 165s Processing triggers for libc-bin (2.42-2ubuntu2) ... 165s Processing triggers for man-db (2.13.1-1) ... 167s Processing triggers for sgml-base (1.31+nmu1) ... 167s Setting up w3c-sgml-lib (1.3-3) ... 204s Setting up python3-biopython (1.85+dfsg-4) ... 214s autopkgtest [19:51:04]: test run-unit-test: [----------------------- 216s /tmp/autopkgtest.FQpO0Q/build.ebg/src/tests /tmp/autopkgtest.FQpO0Q/build.ebg/src 216s Testing with python3.13 in /tmp/autopkgtest.FQpO0Q/build.ebg/src/tests: 217s ============================= test session starts ============================== 217s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.13 217s cachedir: .pytest_cache 217s rootdir: /tmp/autopkgtest.FQpO0Q/build.ebg/src 217s plugins: typeguard-4.4.2, cov-5.0.0, mock-3.15.1, requests_mock-1.12.1 217s collecting ... collected 32 items 217s 217s test_core.py::test_config PASSED [ 3%] 217s test_core.py::test_config_no_biopython PASSED [ 6%] 217s test_core.py::test_config_have_biopython PASSED [ 9%] 217s test_core.py::test_download_to_file PASSED [ 12%] 217s test_core.py::test_download_to_file_append PASSED [ 15%] 217s test_core.py::test_download_to_file_retry PASSED [ 18%] 217s test_core.py::test_build_params PASSED [ 21%] 217s test_core.py::test_generate_filename PASSED [ 25%] 217s test_core.py::test_validate_and_write_error_pattern_raises PASSED [ 28%] 217s test_core.py::test_validate_and_write_emit PASSED [ 31%] 217s test_core.py::test_validate_and_write_extended_validation PASSED [ 34%] 217s test_core.py::test_get_stream_exception PASSED [ 37%] 217s test_core.py::test_get_stream_bad_status PASSED [ 40%] 217s test_core.py::test_get_stream_too_many_requests PASSED [ 43%] 217s test_core.py::test_generate_url PASSED [ 46%] 217s test_core.py::test_generate_url_with_api_key PASSED [ 50%] 217s test_correct.py::test_download_and_validate_partial_wgs PASSED [ 53%] 217s test_download.py::test_write_stream PASSED [ 56%] 217s test_validate.py::test_run_extended_validation_no_biopython PASSED [ 59%] 217s test_validate.py::test_run_extended_validation_raises PASSED [ 62%] 217s test_validate.py::test_run_extended_validation_loads PASSED [ 65%] 217s test_wgs.py::test_init PASSED [ 68%] 217s test_wgs.py::test_get_ids PASSED [ 71%] 217s test_wgs.py::test_from_string PASSED [ 75%] 217s test_wgs.py::test_download_wgs_parts_no_biopython PASSED [ 78%] 217s test_wgs.py::test_download_wgs_parts_wgs PASSED [ 81%] 217s test_wgs.py::test_download_wgs_parts_wgs_retry PASSED [ 84%] 217s test_wgs.py::test_download_wgs_parts_wgs_scafld PASSED [ 87%] 217s test_wgs.py::test_download_wgs_parts_supercontig PASSED [ 90%] 217s test_wgs.py::test_download_wgs_parts_supercontig_retry PASSED [ 93%] 217s test_wgs.py::test_download_wgs_no_parts PASSED [ 96%] 218s test_wgs.py::test_download_wgs_parts_tsa XFAIL [100%] 218s 218s ======================== 31 passed, 1 xfailed in 0.55s ========================= 218s /tmp/autopkgtest.FQpO0Q/build.ebg/src 218s autopkgtest [19:51:08]: test run-unit-test: -----------------------] 222s autopkgtest [19:51:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 222s run-unit-test PASS 226s autopkgtest [19:51:16]: @@@@@@@@@@@@@@@@@@@@ summary 226s run-unit-test PASS