0s autopkgtest [19:40:34]: starting date and time: 2025-11-15 19:40:34+0000 0s autopkgtest [19:40:34]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [19:40:34]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.iy2hz6m9/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:requests --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 -- lxd -r lxd-armhf-10.145.243.230 lxd-armhf-10.145.243.230:autopkgtest/ubuntu/resolute/armhf 20s autopkgtest [19:40:54]: testbed dpkg architecture: armhf 22s autopkgtest [19:40:56]: testbed apt version: 3.1.11 26s autopkgtest [19:41:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [19:41:02]: testbed release detected to be: None 36s autopkgtest [19:41:10]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 38s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [87.8 kB] 38s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 38s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 38s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [821 kB] 38s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 38s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 38s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [78.5 kB] 38s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [136 kB] 39s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B] 39s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [506 kB] 39s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9140 B] 39s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1404 kB] 39s Get:14 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 41s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1369 kB] 41s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 42s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [184 kB] 45s Fetched 41.2 MB in 7s (5909 kB/s) 46s Reading package lists... 51s autopkgtest [19:41:25]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s The following packages will be upgraded: 54s python3-requests python3-rpds-py 55s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 396 kB of archives. 55s After this operation, 727 kB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 55s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3-rpds-py armhf 0.27.1-2ubuntu1 [343 kB] 56s Fetched 396 kB in 0s (841 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65903 files and directories currently installed.) 56s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 56s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 56s Preparing to unpack .../python3-rpds-py_0.27.1-2ubuntu1_armhf.deb ... 56s Unpacking python3-rpds-py (0.27.1-2ubuntu1) over (0.21.0-2ubuntu2) ... 56s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 56s Setting up python3-rpds-py (0.27.1-2ubuntu1) ... 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [19:41:37]: rebooting testbed after setup commands that affected boot 103s autopkgtest [19:42:17]: testbed running kernel: Linux 6.8.0-86-generic #87~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 29 09:26:46 UTC 2 128s autopkgtest [19:42:42]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 139s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 139s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 139s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 139s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 139s gpgv: issuer "tchet@debian.org" 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 140s autopkgtest [19:42:54]: testing package multiqc version 1.21+dfsg-2 142s autopkgtest [19:42:56]: build not needed 144s autopkgtest [19:42:58]: test run-unit-test: preparing testbed 146s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Solving dependencies... 147s The following NEW packages will be installed: 147s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 147s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 147s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 147s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 147s libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui liblapack3 147s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 147s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 147s libxrender1 libxslt1.1 libxss1 libzopfli1 multiqc python-matplotlib-data 147s python3-brotli python3-click python3-coloredlogs python3-colormath 147s python3-contourpy python3-cycler python3-decorator python3-fastjsonschema 147s python3-fonttools python3-fs python3-humanfriendly python3-humanize 147s python3-importlib-metadata python3-jupyter-core python3-kiwisolver 147s python3-lxml python3-lz4 python3-lzstring python3-markdown 147s python3-matplotlib python3-mpmath python3-nbformat python3-networkx 147s python3-numpy python3-numpy-dev python3-pil python3-pil.imagetk 147s python3-platformdirs python3-plotly python3-pyaml-env python3-pytz 147s python3-rich-click python3-scipy python3-spectra python3-sympy 147s python3-tenacity python3-tk python3-traitlets python3-tz python3-ufolib2 147s python3-unicodedata2 python3-zopfli python3.13-tk python3.14-tk tk8.6-blt2.5 147s unicode-data x11-common 148s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 89.5 MB of archives. 148s After this operation, 434 MB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.2.4+ds-1ubuntu1 [141 kB] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-7ubuntu1 [334 kB] 148s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 148s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.2.4+ds-1ubuntu1 [3724 kB] 148s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 148s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 148s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 148s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 148s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 148s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 148s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 148s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 148s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 148s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 148s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 148s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [527 kB] 148s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf blt armhf 2.5.3+dfsg-8 [4824 B] 148s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 148s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.4.4-2 [171 kB] 148s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 148s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-7ubuntu1 [129 kB] 148s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 148s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 148s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 149s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 149s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 149s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 149s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 149s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-metadata all 12-4 [6582 B] 149s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 149s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 149s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 149s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 149s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-7 [174 kB] 149s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 149s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 149s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 149s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 149s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 149s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 149s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 149s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 149s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3 [91.7 kB] 149s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 149s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanfriendly all 10.0-6 [70.8 kB] 149s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-coloredlogs all 15.0.1-1 [38.2 kB] 149s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanize all 4.12.1-1 [58.3 kB] 149s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf python3-importlib-metadata all 8.7.0-2 [21.0 kB] 149s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf python3-markdown all 3.8.2-2 [75.2 kB] 149s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 149s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.3-2.1 [174 kB] 149s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 11.3.0-1ubuntu2 [465 kB] 149s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.0-4 [105 kB] 149s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.9-1 [104 kB] 149s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tk armhf 3.13.9-1 [8944 B] 149s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 11.3.0-1ubuntu2 [9236 B] 149s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.1-2 [267 kB] 149s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 149s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 149s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.3.7-1 [16.9 kB] 149s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 149s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 149s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.4+dfsg-3 [25.9 kB] 149s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 149s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.15.3-1ubuntu1 [19.7 MB] 150s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 150s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 150s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 150s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-unicodedata2 armhf 16.0.0+ds-1build1 [394 kB] 150s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 150s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1 [9513 kB] 150s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.57.0-2build1 [1688 kB] 150s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 150s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 151s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pytz all 2025.2-4 [32.3 kB] 151s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tz all 2025.2-4 [1746 B] 151s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 151s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 151s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.7.2-5 [28.1 kB] 151s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.9.1-1 [41.2 kB] 151s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 151s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plotly all 5.20.0+dfsg-1 [2766 kB] 151s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyaml-env all 1.2.1-2 [9090 B] 151s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rich-click all 1.6.0-2 [18.0 kB] 151s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 151s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-colormath all 3.0.0-4 [36.6 kB] 151s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-spectra all 0.1.0-1 [17.2 kB] 151s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lzstring all 1.0.4-3 [6262 B] 151s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf multiqc all 1.21+dfsg-2 [733 kB] 152s Fetched 89.5 MB in 4s (22.1 MB/s) 152s Selecting previously unselected package python3-numpy-dev:armhf. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 152s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 152s Unpacking python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 152s Selecting previously unselected package libblas3:armhf. 152s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 152s Unpacking libblas3:armhf (3.12.1-7) ... 152s Selecting previously unselected package libgfortran5:armhf. 152s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_armhf.deb ... 152s Unpacking libgfortran5:armhf (15.2.0-7ubuntu1) ... 152s Selecting previously unselected package liblapack3:armhf. 152s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 152s Unpacking liblapack3:armhf (3.12.1-7) ... 153s Selecting previously unselected package python3-numpy. 153s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 153s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 153s Selecting previously unselected package libtcl8.6:armhf. 153s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 153s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 153s Selecting previously unselected package libfreetype6:armhf. 153s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 153s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 153s Selecting previously unselected package fonts-dejavu-mono. 153s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-mono (2.37-8) ... 153s Selecting previously unselected package fonts-dejavu-core. 153s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-core (2.37-8) ... 153s Selecting previously unselected package fontconfig-config. 153s Preparing to unpack .../09-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 154s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 154s Selecting previously unselected package libfontconfig1:armhf. 154s Preparing to unpack .../10-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 154s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 154s Selecting previously unselected package libxrender1:armhf. 154s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_armhf.deb ... 154s Unpacking libxrender1:armhf (1:0.9.12-1) ... 154s Selecting previously unselected package libxft2:armhf. 154s Preparing to unpack .../12-libxft2_2.3.6-1build1_armhf.deb ... 154s Unpacking libxft2:armhf (2.3.6-1build1) ... 154s Selecting previously unselected package x11-common. 154s Preparing to unpack .../13-x11-common_1%3a7.7+24ubuntu1_all.deb ... 154s Unpacking x11-common (1:7.7+24ubuntu1) ... 154s Selecting previously unselected package libxss1:armhf. 154s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 154s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 154s Selecting previously unselected package libtk8.6:armhf. 154s Preparing to unpack .../15-libtk8.6_8.6.17-1_armhf.deb ... 154s Unpacking libtk8.6:armhf (8.6.17-1) ... 154s Selecting previously unselected package tk8.6-blt2.5. 154s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-8_armhf.deb ... 154s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 154s Selecting previously unselected package blt. 154s Preparing to unpack .../17-blt_2.5.3+dfsg-8_armhf.deb ... 154s Unpacking blt (2.5.3+dfsg-8) ... 154s Selecting previously unselected package fonts-glyphicons-halflings. 154s Preparing to unpack .../18-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 154s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 154s Selecting previously unselected package fonts-lyx. 154s Preparing to unpack .../19-fonts-lyx_2.4.4-2_all.deb ... 154s Unpacking fonts-lyx (2.4.4-2) ... 154s Selecting previously unselected package libdeflate0:armhf. 154s Preparing to unpack .../20-libdeflate0_1.23-2_armhf.deb ... 154s Unpacking libdeflate0:armhf (1.23-2) ... 154s Selecting previously unselected package libgomp1:armhf. 154s Preparing to unpack .../21-libgomp1_15.2.0-7ubuntu1_armhf.deb ... 154s Unpacking libgomp1:armhf (15.2.0-7ubuntu1) ... 154s Selecting previously unselected package libgraphite2-3:armhf. 154s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 154s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 154s Selecting previously unselected package libharfbuzz0b:armhf. 154s Preparing to unpack .../23-libharfbuzz0b_12.1.0-1_armhf.deb ... 154s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 154s Selecting previously unselected package libimagequant0:armhf. 154s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_armhf.deb ... 154s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 154s Selecting previously unselected package libjpeg-turbo8:armhf. 154s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 154s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 154s Selecting previously unselected package libjpeg8:armhf. 154s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_armhf.deb ... 154s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 154s Selecting previously unselected package libjs-bootstrap. 154s Preparing to unpack .../27-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 154s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 154s Selecting previously unselected package libjs-jquery. 154s Preparing to unpack .../28-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 154s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 154s Selecting previously unselected package libjs-jquery-metadata. 154s Preparing to unpack .../29-libjs-jquery-metadata_12-4_all.deb ... 154s Unpacking libjs-jquery-metadata (12-4) ... 155s Selecting previously unselected package libjs-jquery-tablesorter. 155s Preparing to unpack .../30-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 155s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 155s Selecting previously unselected package libjs-jquery-ui. 155s Preparing to unpack .../31-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 155s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 155s Selecting previously unselected package liblcms2-2:armhf. 155s Preparing to unpack .../32-liblcms2-2_2.16-2_armhf.deb ... 155s Unpacking liblcms2-2:armhf (2.16-2) ... 155s Selecting previously unselected package liblerc4:armhf. 155s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 155s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 155s Selecting previously unselected package libqhull-r8.0:armhf. 155s Preparing to unpack .../34-libqhull-r8.0_2020.2-7_armhf.deb ... 155s Unpacking libqhull-r8.0:armhf (2020.2-7) ... 155s Selecting previously unselected package libraqm0:armhf. 155s Preparing to unpack .../35-libraqm0_0.10.3-1_armhf.deb ... 155s Unpacking libraqm0:armhf (0.10.3-1) ... 155s Selecting previously unselected package libsharpyuv0:armhf. 155s Preparing to unpack .../36-libsharpyuv0_1.5.0-0.1_armhf.deb ... 155s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 155s Selecting previously unselected package libjbig0:armhf. 155s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 155s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 155s Selecting previously unselected package libwebp7:armhf. 155s Preparing to unpack .../38-libwebp7_1.5.0-0.1_armhf.deb ... 155s Unpacking libwebp7:armhf (1.5.0-0.1) ... 155s Selecting previously unselected package libtiff6:armhf. 155s Preparing to unpack .../39-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 155s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 155s Selecting previously unselected package libwebpdemux2:armhf. 155s Preparing to unpack .../40-libwebpdemux2_1.5.0-0.1_armhf.deb ... 155s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 155s Selecting previously unselected package libwebpmux3:armhf. 155s Preparing to unpack .../41-libwebpmux3_1.5.0-0.1_armhf.deb ... 155s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 155s Selecting previously unselected package libxslt1.1:armhf. 155s Preparing to unpack .../42-libxslt1.1_1.1.43-0.3_armhf.deb ... 155s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 155s Selecting previously unselected package libzopfli1. 155s Preparing to unpack .../43-libzopfli1_1.0.3-3_armhf.deb ... 155s Unpacking libzopfli1 (1.0.3-3) ... 155s Selecting previously unselected package python3-click. 155s Preparing to unpack .../44-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 155s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 155s Selecting previously unselected package python3-humanfriendly. 155s Preparing to unpack .../45-python3-humanfriendly_10.0-6_all.deb ... 155s Unpacking python3-humanfriendly (10.0-6) ... 155s Selecting previously unselected package python3-coloredlogs. 155s Preparing to unpack .../46-python3-coloredlogs_15.0.1-1_all.deb ... 155s Unpacking python3-coloredlogs (15.0.1-1) ... 155s Selecting previously unselected package python3-humanize. 155s Preparing to unpack .../47-python3-humanize_4.12.1-1_all.deb ... 155s Unpacking python3-humanize (4.12.1-1) ... 155s Selecting previously unselected package python3-importlib-metadata. 155s Preparing to unpack .../48-python3-importlib-metadata_8.7.0-2_all.deb ... 155s Unpacking python3-importlib-metadata (8.7.0-2) ... 155s Selecting previously unselected package python3-markdown. 155s Preparing to unpack .../49-python3-markdown_3.8.2-2_all.deb ... 155s Unpacking python3-markdown (3.8.2-2) ... 155s Selecting previously unselected package python-matplotlib-data. 155s Preparing to unpack .../50-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 155s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 156s Selecting previously unselected package libopenjp2-7:armhf. 156s Preparing to unpack .../51-libopenjp2-7_2.5.3-2.1_armhf.deb ... 156s Unpacking libopenjp2-7:armhf (2.5.3-2.1) ... 156s Selecting previously unselected package python3-pil:armhf. 156s Preparing to unpack .../52-python3-pil_11.3.0-1ubuntu2_armhf.deb ... 156s Unpacking python3-pil:armhf (11.3.0-1ubuntu2) ... 156s Selecting previously unselected package python3.14-tk. 156s Preparing to unpack .../53-python3.14-tk_3.14.0-4_armhf.deb ... 156s Unpacking python3.14-tk (3.14.0-4) ... 156s Selecting previously unselected package python3.13-tk. 156s Preparing to unpack .../54-python3.13-tk_3.13.9-1_armhf.deb ... 156s Unpacking python3.13-tk (3.13.9-1) ... 156s Selecting previously unselected package python3-tk:armhf. 156s Preparing to unpack .../55-python3-tk_3.13.9-1_armhf.deb ... 156s Unpacking python3-tk:armhf (3.13.9-1) ... 156s Selecting previously unselected package python3-pil.imagetk:armhf. 156s Preparing to unpack .../56-python3-pil.imagetk_11.3.0-1ubuntu2_armhf.deb ... 156s Unpacking python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 156s Selecting previously unselected package python3-contourpy. 156s Preparing to unpack .../57-python3-contourpy_1.3.1-2_armhf.deb ... 156s Unpacking python3-contourpy (1.3.1-2) ... 156s Selecting previously unselected package python3-cycler. 156s Preparing to unpack .../58-python3-cycler_0.12.1-2_all.deb ... 156s Unpacking python3-cycler (0.12.1-2) ... 156s Selecting previously unselected package python3-brotli. 156s Preparing to unpack .../59-python3-brotli_1.1.0-2build6_armhf.deb ... 156s Unpacking python3-brotli (1.1.0-2build6) ... 156s Selecting previously unselected package python3-platformdirs. 156s Preparing to unpack .../60-python3-platformdirs_4.3.7-1_all.deb ... 156s Unpacking python3-platformdirs (4.3.7-1) ... 156s Selecting previously unselected package python3-fs. 156s Preparing to unpack .../61-python3-fs_2.4.16-9ubuntu1_all.deb ... 156s Unpacking python3-fs (2.4.16-9ubuntu1) ... 156s Selecting previously unselected package python3-lxml:armhf. 156s Preparing to unpack .../62-python3-lxml_6.0.2-1_armhf.deb ... 156s Unpacking python3-lxml:armhf (6.0.2-1) ... 156s Selecting previously unselected package python3-lz4. 156s Preparing to unpack .../63-python3-lz4_4.4.4+dfsg-3_armhf.deb ... 156s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 156s Selecting previously unselected package python3-decorator. 156s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 156s Unpacking python3-decorator (5.2.1-2) ... 156s Selecting previously unselected package python3-scipy. 156s Preparing to unpack .../65-python3-scipy_1.15.3-1ubuntu1_armhf.deb ... 156s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 157s Selecting previously unselected package python3-mpmath. 157s Preparing to unpack .../66-python3-mpmath_1.3.0-2_all.deb ... 157s Unpacking python3-mpmath (1.3.0-2) ... 157s Selecting previously unselected package python3-sympy. 157s Preparing to unpack .../67-python3-sympy_1.14.0-2_all.deb ... 157s Unpacking python3-sympy (1.14.0-2) ... 158s Selecting previously unselected package python3-ufolib2. 158s Preparing to unpack .../68-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 158s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 158s Selecting previously unselected package python3-unicodedata2. 158s Preparing to unpack .../69-python3-unicodedata2_16.0.0+ds-1build1_armhf.deb ... 158s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 158s Selecting previously unselected package python3-zopfli. 158s Preparing to unpack .../70-python3-zopfli_0.4.0-1_armhf.deb ... 158s Unpacking python3-zopfli (0.4.0-1) ... 158s Selecting previously unselected package unicode-data. 158s Preparing to unpack .../71-unicode-data_16.0.0-1_all.deb ... 158s Unpacking unicode-data (16.0.0-1) ... 158s Selecting previously unselected package python3-fonttools. 158s Preparing to unpack .../72-python3-fonttools_4.57.0-2build1_armhf.deb ... 158s Unpacking python3-fonttools (4.57.0-2build1) ... 159s Selecting previously unselected package python3-kiwisolver. 159s Preparing to unpack .../73-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 159s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 159s Selecting previously unselected package python3-matplotlib. 159s Preparing to unpack .../74-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 159s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 159s Selecting previously unselected package python3-pytz. 159s Preparing to unpack .../75-python3-pytz_2025.2-4_all.deb ... 159s Unpacking python3-pytz (2025.2-4) ... 159s Selecting previously unselected package python3-tz. 159s Preparing to unpack .../76-python3-tz_2025.2-4_all.deb ... 159s Unpacking python3-tz (2025.2-4) ... 160s Selecting previously unselected package python3-fastjsonschema. 160s Preparing to unpack .../77-python3-fastjsonschema_2.21.1-1_all.deb ... 160s Unpacking python3-fastjsonschema (2.21.1-1) ... 160s Selecting previously unselected package python3-traitlets. 160s Preparing to unpack .../78-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 160s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 160s Selecting previously unselected package python3-jupyter-core. 160s Preparing to unpack .../79-python3-jupyter-core_5.7.2-5_all.deb ... 160s Unpacking python3-jupyter-core (5.7.2-5) ... 160s Selecting previously unselected package python3-nbformat. 160s Preparing to unpack .../80-python3-nbformat_5.9.1-1_all.deb ... 160s Unpacking python3-nbformat (5.9.1-1) ... 160s Selecting previously unselected package python3-tenacity. 160s Preparing to unpack .../81-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 160s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 160s Selecting previously unselected package python3-plotly. 160s Preparing to unpack .../82-python3-plotly_5.20.0+dfsg-1_all.deb ... 160s Unpacking python3-plotly (5.20.0+dfsg-1) ... 162s Selecting previously unselected package python3-pyaml-env. 162s Preparing to unpack .../83-python3-pyaml-env_1.2.1-2_all.deb ... 162s Unpacking python3-pyaml-env (1.2.1-2) ... 162s Selecting previously unselected package python3-rich-click. 162s Preparing to unpack .../84-python3-rich-click_1.6.0-2_all.deb ... 162s Unpacking python3-rich-click (1.6.0-2) ... 162s Selecting previously unselected package python3-networkx. 162s Preparing to unpack .../85-python3-networkx_3.2.1-4ubuntu1_all.deb ... 162s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 163s Selecting previously unselected package python3-colormath. 163s Preparing to unpack .../86-python3-colormath_3.0.0-4_all.deb ... 163s Unpacking python3-colormath (3.0.0-4) ... 163s Selecting previously unselected package python3-spectra. 163s Preparing to unpack .../87-python3-spectra_0.1.0-1_all.deb ... 163s Unpacking python3-spectra (0.1.0-1) ... 163s Selecting previously unselected package python3-lzstring. 163s Preparing to unpack .../88-python3-lzstring_1.0.4-3_all.deb ... 163s Unpacking python3-lzstring (1.0.4-3) ... 163s Selecting previously unselected package multiqc. 163s Preparing to unpack .../89-multiqc_1.21+dfsg-2_all.deb ... 163s Unpacking multiqc (1.21+dfsg-2) ... 164s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 164s Setting up liblcms2-2:armhf (2.16-2) ... 164s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 164s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 164s Setting up python3-importlib-metadata (8.7.0-2) ... 164s Setting up libxrender1:armhf (1:0.9.12-1) ... 164s Setting up python3-lz4 (4.4.4+dfsg-3) ... 164s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 164s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 164s Setting up fonts-lyx (2.4.4-2) ... 164s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 164s Setting up x11-common (1:7.7+24ubuntu1) ... 165s Setting up libdeflate0:armhf (1.23-2) ... 165s Setting up libqhull-r8.0:armhf (2020.2-7) ... 165s Setting up python3-pytz (2025.2-4) ... 165s Setting up libgomp1:armhf (15.2.0-7ubuntu1) ... 165s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 165s Setting up python3-networkx (3.2.1-4ubuntu1) ... 167s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 167s Setting up python3-platformdirs (4.3.7-1) ... 167s Setting up python3-tz (2025.2-4) ... 167s Setting up python3-fs (2.4.16-9ubuntu1) ... 167s Setting up unicode-data (16.0.0-1) ... 167s Setting up python3-decorator (5.2.1-2) ... 168s Setting up libblas3:armhf (3.12.1-7) ... 168s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 168s Setting up python3-pyaml-env (1.2.1-2) ... 168s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 168s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 168s Setting up libzopfli1 (1.0.3-3) ... 168s Setting up python3-humanfriendly (10.0-6) ... 168s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 168s Setting up python3-brotli (1.1.0-2build6) ... 168s Setting up python3-cycler (0.12.1-2) ... 168s Setting up libimagequant0:armhf (2.18.0-1build1) ... 168s Setting up fonts-dejavu-mono (2.37-8) ... 168s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 169s Setting up python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 169s Setting up python3-markdown (3.8.2-2) ... 169s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 169s Setting up fonts-dejavu-core (2.37-8) ... 169s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 169s Setting up libgfortran5:armhf (15.2.0-7ubuntu1) ... 169s Setting up libwebp7:armhf (1.5.0-0.1) ... 169s Setting up python3-rich-click (1.6.0-2) ... 169s Setting up python3-fastjsonschema (2.21.1-1) ... 169s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 170s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 170s Setting up libopenjp2-7:armhf (2.5.3-2.1) ... 170s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 170s Setting up libxss1:armhf (1:1.2.3-1build3) ... 170s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 170s Setting up python3-mpmath (1.3.0-2) ... 170s Setting up python3-lzstring (1.0.4-3) ... 171s Setting up python3-humanize (4.12.1-1) ... 171s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 171s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 171s Setting up python3-coloredlogs (15.0.1-1) ... 171s Setting up python3-jupyter-core (5.7.2-5) ... 171s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 171s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 171s Setting up python3-sympy (1.14.0-2) ... 178s Setting up liblapack3:armhf (3.12.1-7) ... 178s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 178s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 179s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 179s Setting up python3-nbformat (5.9.1-1) ... 179s Setting up python3-zopfli (0.4.0-1) ... 179s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 179s Setting up libjs-jquery-metadata (12-4) ... 179s Setting up libraqm0:armhf (0.10.3-1) ... 179s Setting up python3-plotly (5.20.0+dfsg-1) ... 188s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 191s Setting up python3-colormath (3.0.0-4) ... 191s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 191s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 191s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 191s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 191s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 191s :param sigma: :math:`\sigma` 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 191s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 191s logger.debug(" \- Target RGB space: %s", target_rgb) 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 191s logger.debug(" \- Target native illuminant: %s", target_illum) 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 191s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 191s logger.debug(" \* Applying transformation from %s to %s ", 191s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 191s logger.debug(" \* New values: %.3f, %.3f, %.3f", 191s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 191s logger.debug(" \- Original illuminant: %s", self.illuminant) 191s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 191s logger.debug(" \- Target illuminant: %s", target_illuminant) 191s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 191s logger.debug(" \* Applying transformation from %s to %s ", 192s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 192s Setting up python3-lxml:armhf (6.0.2-1) ... 192s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 192s Setting up python3-contourpy (1.3.1-2) ... 192s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 192s Setting up libxft2:armhf (2.3.6-1build1) ... 192s Setting up python3-scipy (1.15.3-1ubuntu1) ... 196s Setting up python3-spectra (0.1.0-1) ... 196s Setting up libtk8.6:armhf (8.6.17-1) ... 196s Setting up python3.13-tk (3.13.9-1) ... 197s Setting up python3-pil:armhf (11.3.0-1ubuntu2) ... 197s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 197s Setting up python3.14-tk (3.14.0-4) ... 197s Setting up blt (2.5.3+dfsg-8) ... 197s Setting up python3-tk:armhf (3.13.9-1) ... 197s Setting up python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 197s Setting up python3-fonttools (4.57.0-2build1) ... 199s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 199s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 202s Setting up multiqc (1.21+dfsg-2) ... 203s Processing triggers for libc-bin (2.42-2ubuntu2) ... 203s Processing triggers for man-db (2.13.1-1) ... 212s autopkgtest [19:44:06]: test run-unit-test: [----------------------- 215s 215s /// MultiQC 🔍 | v1.21 215s 215s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 215s 215s MultiQC aggregates results from bioinformatics analyses across many samples 215s into a single report. 215s It searches a given directory for analysis logs and compiles a HTML report. 215s It's a general use tool, perfect for summarising the output from numerous 215s bioinformatics tools. 215s To run, supply with one or more directory to scan for analysis results. For 215s example, to run in the current working directory, use 'multiqc .' 215s 215s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 215s │ --force -f Overwrite any existing reports │ 215s │ --config -c Specific config file to load, after those in MultiQC │ 215s │ dir / home dir / working dir. │ 215s │ (PATH) │ 215s │ --cl-config Specify MultiQC config YAML on the command line │ 215s │ (TEXT) │ 215s │ --filename -n Report filename. Use 'stdout' to print to standard │ 215s │ out. │ 215s │ (TEXT) │ 215s │ --outdir -o Create report in the specified output directory. │ 215s │ (TEXT) │ 215s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 215s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 215s │ --ignore-symlinks Ignore symlinked directories and files │ 215s │ --file-list -l Supply a file containing a list of file paths to be │ 215s │ searched, one per row │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 215s │ --module -m Use only this module. Can specify multiple times. │ 215s │ (MODULE NAME) │ 215s │ --exclude -e Do not use this module. Can specify multiple times. │ 215s │ (MODULE NAME) │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 215s │ --dirs -d Prepend directory to sample names │ 215s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 215s │ to take from start of path. │ 215s │ (INTEGER) │ 215s │ --fullnames -s Do not clean the sample names (leave as full file │ 215s │ name) │ 215s │ --fn_as_s_name Use the log filename as the sample name │ 215s │ --replace-names TSV file to rename sample names during report │ 215s │ generation │ 215s │ (PATH) │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 215s │ --title -i Report title. Printed as page header, used for │ 215s │ filename if not otherwise specified. │ 215s │ (TEXT) │ 215s │ --comment -b Custom comment, will be printed at the top of the │ 215s │ report. │ 215s │ (TEXT) │ 215s │ --template -t Report template to use. │ 215s │ (default|gathered|geo|highcharts|sections|simple) │ 215s │ --sample-names TSV file containing alternative sample names for │ 215s │ renaming buttons in the report │ 215s │ (PATH) │ 215s │ --sample-filters TSV file containing show/hide patterns for the report │ 215s │ (PATH) │ 215s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 215s │ --flat -fp Use only flat plots (static images) │ 215s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 215s │ --export -p Export plots as static images in addition to the report │ 215s │ --data-dir Force the parsed data directory to be created. │ 215s │ --no-data-dir Prevent the parsed data directory from being created. │ 215s │ --data-format -k Output parsed data in a different format. │ 215s │ (tsv|csv|json|yaml) │ 215s │ --zip-data-dir -z Compress the data directory. │ 215s │ --no-report Do not generate a report, only export data and plots │ 215s │ --pdf Creates PDF report with the 'simple' template. Requires │ 215s │ Pandoc to be installed. │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 215s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 215s │ --quiet -q Only show log warnings │ 215s │ --strict Don't catch exceptions, run additional code checks │ 215s │ to help development. │ 215s │ --development,--dev Development mode. Do not compress and minimise JS, │ 215s │ export uncompressed plot data │ 215s │ --require-logs Require all explicitly requested modules to have │ 215s │ log files. If not, MultiQC will exit with an error. │ 215s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 215s │ the report │ 215s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 215s │ MegaQC options are found │ 215s │ --no-ansi Disable coloured log output │ 215s │ --version Show the version and exit. │ 215s │ --help -h Show this message and exit. │ 215s ╰──────────────────────────────────────────────────────────────────────────────╯ 215s 215s See http://multiqc.info for more details. 215s 216s FIXME: The test data should be delivered in a separate binary package once freeze is over 217s 217s /// MultiQC 🔍 | v1.21 217s 217s | multiqc | MultiQC Version v1.32 now available! 217s | multiqc | Search path : /tmp/autopkgtest.oHZXlo/autopkgtest_tmp/data 218s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 218s | feature_counts | Found 8 reports 218s | star | Found 8 reports 218s | cutadapt | Found 16 reports 218s | fastqc | Found 32 reports 219s | multiqc | Report : multiqc_report.html 219s | multiqc | Data : multiqc_data 219s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmp5l_vqcyd/assets/js/packages/jszip.min.js' 219s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmp5l_vqcyd/assets/js/packages/plotly-2.27.0.min.js' 219s | multiqc | MultiQC complete 220s -e 220s PASS 220s 220s autopkgtest [19:44:14]: test run-unit-test: -----------------------] 224s autopkgtest [19:44:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 224s run-unit-test PASS 228s autopkgtest [19:44:22]: @@@@@@@@@@@@@@@@@@@@ summary 228s run-unit-test PASS