0s autopkgtest [02:44:16]: starting date and time: 2025-11-14 02:44:16+0000 0s autopkgtest [02:44:16]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [02:44:16]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zwx67tu4/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:numpy --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:2.3.4+ds-3ubuntu1 -- lxd -r lxd-armhf-10.145.243.229 lxd-armhf-10.145.243.229:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [02:44:37]: testbed dpkg architecture: armhf 24s autopkgtest [02:44:39]: testbed apt version: 3.1.11 27s autopkgtest [02:44:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [02:44:45]: testbed release detected to be: None 37s autopkgtest [02:44:53]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 39s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 39s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 39s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 39s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.4 kB] 39s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 39s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [765 kB] 40s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 40s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [137 kB] 40s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B] 40s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [400 kB] 40s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9140 B] 40s Fetched 1514 kB in 2s (949 kB/s) 41s Reading package lists... 47s autopkgtest [02:45:03]: upgrading testbed (apt dist-upgrade and autopurge) 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 55s Solving dependencies... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s autopkgtest [02:45:12]: rebooting testbed after setup commands that affected boot 98s autopkgtest [02:45:54]: testbed running kernel: Linux 6.8.0-86-generic #87~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 29 09:26:46 UTC 2 124s autopkgtest [02:46:20]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 135s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 135s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 136s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 136s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 136s gpgv: issuer "tchet@debian.org" 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 137s autopkgtest [02:46:33]: testing package multiqc version 1.21+dfsg-2 139s autopkgtest [02:46:35]: build not needed 142s autopkgtest [02:46:38]: test run-unit-test: preparing testbed 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s The following NEW packages will be installed: 144s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 144s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 144s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 144s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 144s libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui liblapack3 144s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 144s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 144s libxrender1 libxslt1.1 libxss1 libzopfli1 multiqc python-matplotlib-data 144s python3-brotli python3-click python3-coloredlogs python3-colormath 144s python3-contourpy python3-cycler python3-decorator python3-fastjsonschema 144s python3-fonttools python3-fs python3-humanfriendly python3-humanize 144s python3-importlib-metadata python3-jupyter-core python3-kiwisolver 144s python3-lxml python3-lz4 python3-lzstring python3-markdown 144s python3-matplotlib python3-mpmath python3-nbformat python3-networkx 144s python3-numpy python3-numpy-dev python3-pil python3-pil.imagetk 144s python3-platformdirs python3-plotly python3-pyaml-env python3-pytz 144s python3-rich-click python3-scipy python3-spectra python3-sympy 144s python3-tenacity python3-tk python3-traitlets python3-tz python3-ufolib2 144s python3-unicodedata2 python3-zopfli python3.13-tk python3.14-tk tk8.6-blt2.5 144s unicode-data x11-common 144s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 90.5 MB of archives. 145s After this operation, 443 MB of additional disk space will be used. 145s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-numpy-dev armhf 1:2.3.4+ds-3ubuntu1 [140 kB] 145s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 145s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-7ubuntu1 [334 kB] 145s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 145s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-numpy armhf 1:2.3.4+ds-3ubuntu1 [4726 kB] 145s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 145s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 145s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 145s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 145s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 145s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 145s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 145s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 145s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 145s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 145s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 146s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [527 kB] 146s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf blt armhf 2.5.3+dfsg-8 [4824 B] 146s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 146s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.4.4-2 [171 kB] 146s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 146s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-7ubuntu1 [129 kB] 146s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 146s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 146s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 146s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 146s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 146s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 146s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 146s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-metadata all 12-4 [6582 B] 146s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 146s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 146s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 146s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 146s Get:35 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-7 [174 kB] 146s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 146s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 146s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 146s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 146s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 146s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 146s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 146s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 146s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3 [91.7 kB] 146s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 146s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanfriendly all 10.0-6 [70.8 kB] 146s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-coloredlogs all 15.0.1-1 [38.2 kB] 146s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-humanize all 4.12.1-1 [58.3 kB] 146s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf python3-importlib-metadata all 8.7.0-2 [21.0 kB] 146s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf python3-markdown all 3.8.2-2 [75.2 kB] 146s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 146s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.3-2.1 [174 kB] 146s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 11.3.0-1ubuntu2 [465 kB] 146s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.0-4 [105 kB] 146s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.9-1 [104 kB] 146s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tk armhf 3.13.9-1 [8944 B] 146s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 11.3.0-1ubuntu2 [9236 B] 146s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.1-2 [267 kB] 146s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 146s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 146s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.3.7-1 [16.9 kB] 146s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fs all 2.4.16-8ubuntu1 [91.1 kB] 146s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 146s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.4+dfsg-3 [25.9 kB] 146s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 146s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.15.3-1ubuntu1 [19.7 MB] 147s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 147s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 147s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 147s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-unicodedata2 armhf 16.0.0+ds-1build1 [394 kB] 147s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 147s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1 [9513 kB] 148s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.57.0-2build1 [1688 kB] 148s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 148s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 148s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pytz all 2025.2-4 [32.3 kB] 148s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tz all 2025.2-4 [1746 B] 148s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 148s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 148s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.7.2-5 [28.1 kB] 148s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.9.1-1 [41.2 kB] 148s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 148s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plotly all 5.20.0+dfsg-1 [2766 kB] 148s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pyaml-env all 1.2.1-2 [9090 B] 148s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rich-click all 1.6.0-2 [18.0 kB] 148s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 149s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-colormath all 3.0.0-4 [36.6 kB] 149s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-spectra all 0.1.0-1 [17.2 kB] 149s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lzstring all 1.0.4-3 [6262 B] 149s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf multiqc all 1.21+dfsg-2 [733 kB] 149s Fetched 90.5 MB in 5s (20.1 MB/s) 149s Selecting previously unselected package python3-numpy-dev:armhf. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65903 files and directories currently installed.) 150s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.4+ds-3ubuntu1_armhf.deb ... 150s Unpacking python3-numpy-dev:armhf (1:2.3.4+ds-3ubuntu1) ... 150s Selecting previously unselected package libblas3:armhf. 150s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 150s Unpacking libblas3:armhf (3.12.1-7) ... 150s Selecting previously unselected package libgfortran5:armhf. 150s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_armhf.deb ... 150s Unpacking libgfortran5:armhf (15.2.0-7ubuntu1) ... 150s Selecting previously unselected package liblapack3:armhf. 150s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 150s Unpacking liblapack3:armhf (3.12.1-7) ... 150s Selecting previously unselected package python3-numpy. 150s Preparing to unpack .../04-python3-numpy_1%3a2.3.4+ds-3ubuntu1_armhf.deb ... 150s Unpacking python3-numpy (1:2.3.4+ds-3ubuntu1) ... 150s Selecting previously unselected package libtcl8.6:armhf. 150s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 150s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 150s Selecting previously unselected package libfreetype6:armhf. 150s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 150s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 150s Selecting previously unselected package fonts-dejavu-mono. 150s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-mono (2.37-8) ... 150s Selecting previously unselected package fonts-dejavu-core. 150s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-core (2.37-8) ... 150s Selecting previously unselected package fontconfig-config. 150s Preparing to unpack .../09-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 151s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 151s Selecting previously unselected package libfontconfig1:armhf. 151s Preparing to unpack .../10-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 151s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 151s Selecting previously unselected package libxrender1:armhf. 151s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_armhf.deb ... 151s Unpacking libxrender1:armhf (1:0.9.12-1) ... 151s Selecting previously unselected package libxft2:armhf. 151s Preparing to unpack .../12-libxft2_2.3.6-1build1_armhf.deb ... 151s Unpacking libxft2:armhf (2.3.6-1build1) ... 151s Selecting previously unselected package x11-common. 151s Preparing to unpack .../13-x11-common_1%3a7.7+24ubuntu1_all.deb ... 151s Unpacking x11-common (1:7.7+24ubuntu1) ... 151s Selecting previously unselected package libxss1:armhf. 151s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 151s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 151s Selecting previously unselected package libtk8.6:armhf. 151s Preparing to unpack .../15-libtk8.6_8.6.17-1_armhf.deb ... 151s Unpacking libtk8.6:armhf (8.6.17-1) ... 151s Selecting previously unselected package tk8.6-blt2.5. 151s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-8_armhf.deb ... 151s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 151s Selecting previously unselected package blt. 151s Preparing to unpack .../17-blt_2.5.3+dfsg-8_armhf.deb ... 151s Unpacking blt (2.5.3+dfsg-8) ... 151s Selecting previously unselected package fonts-glyphicons-halflings. 151s Preparing to unpack .../18-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 151s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 151s Selecting previously unselected package fonts-lyx. 151s Preparing to unpack .../19-fonts-lyx_2.4.4-2_all.deb ... 151s Unpacking fonts-lyx (2.4.4-2) ... 151s Selecting previously unselected package libdeflate0:armhf. 151s Preparing to unpack .../20-libdeflate0_1.23-2_armhf.deb ... 151s Unpacking libdeflate0:armhf (1.23-2) ... 151s Selecting previously unselected package libgomp1:armhf. 151s Preparing to unpack .../21-libgomp1_15.2.0-7ubuntu1_armhf.deb ... 151s Unpacking libgomp1:armhf (15.2.0-7ubuntu1) ... 151s Selecting previously unselected package libgraphite2-3:armhf. 151s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 151s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 151s Selecting previously unselected package libharfbuzz0b:armhf. 151s Preparing to unpack .../23-libharfbuzz0b_12.1.0-1_armhf.deb ... 151s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 151s Selecting previously unselected package libimagequant0:armhf. 151s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_armhf.deb ... 151s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 151s Selecting previously unselected package libjpeg-turbo8:armhf. 151s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 151s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 151s Selecting previously unselected package libjpeg8:armhf. 151s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_armhf.deb ... 151s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 151s Selecting previously unselected package libjs-bootstrap. 151s Preparing to unpack .../27-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 151s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack .../28-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 151s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Selecting previously unselected package libjs-jquery-metadata. 151s Preparing to unpack .../29-libjs-jquery-metadata_12-4_all.deb ... 151s Unpacking libjs-jquery-metadata (12-4) ... 152s Selecting previously unselected package libjs-jquery-tablesorter. 152s Preparing to unpack .../30-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 152s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 152s Selecting previously unselected package libjs-jquery-ui. 152s Preparing to unpack .../31-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 152s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 152s Selecting previously unselected package liblcms2-2:armhf. 152s Preparing to unpack .../32-liblcms2-2_2.16-2_armhf.deb ... 152s Unpacking liblcms2-2:armhf (2.16-2) ... 152s Selecting previously unselected package liblerc4:armhf. 152s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 152s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 152s Selecting previously unselected package libqhull-r8.0:armhf. 152s Preparing to unpack .../34-libqhull-r8.0_2020.2-7_armhf.deb ... 152s Unpacking libqhull-r8.0:armhf (2020.2-7) ... 152s Selecting previously unselected package libraqm0:armhf. 152s Preparing to unpack .../35-libraqm0_0.10.3-1_armhf.deb ... 152s Unpacking libraqm0:armhf (0.10.3-1) ... 152s Selecting previously unselected package libsharpyuv0:armhf. 152s Preparing to unpack .../36-libsharpyuv0_1.5.0-0.1_armhf.deb ... 152s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 152s Selecting previously unselected package libjbig0:armhf. 152s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 152s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 152s Selecting previously unselected package libwebp7:armhf. 152s Preparing to unpack .../38-libwebp7_1.5.0-0.1_armhf.deb ... 152s Unpacking libwebp7:armhf (1.5.0-0.1) ... 152s Selecting previously unselected package libtiff6:armhf. 152s Preparing to unpack .../39-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 152s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 152s Selecting previously unselected package libwebpdemux2:armhf. 152s Preparing to unpack .../40-libwebpdemux2_1.5.0-0.1_armhf.deb ... 152s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 152s Selecting previously unselected package libwebpmux3:armhf. 152s Preparing to unpack .../41-libwebpmux3_1.5.0-0.1_armhf.deb ... 152s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 152s Selecting previously unselected package libxslt1.1:armhf. 152s Preparing to unpack .../42-libxslt1.1_1.1.43-0.3_armhf.deb ... 152s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 152s Selecting previously unselected package libzopfli1. 152s Preparing to unpack .../43-libzopfli1_1.0.3-3_armhf.deb ... 152s Unpacking libzopfli1 (1.0.3-3) ... 152s Selecting previously unselected package python3-click. 152s Preparing to unpack .../44-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 152s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 152s Selecting previously unselected package python3-humanfriendly. 152s Preparing to unpack .../45-python3-humanfriendly_10.0-6_all.deb ... 152s Unpacking python3-humanfriendly (10.0-6) ... 152s Selecting previously unselected package python3-coloredlogs. 152s Preparing to unpack .../46-python3-coloredlogs_15.0.1-1_all.deb ... 152s Unpacking python3-coloredlogs (15.0.1-1) ... 152s Selecting previously unselected package python3-humanize. 152s Preparing to unpack .../47-python3-humanize_4.12.1-1_all.deb ... 152s Unpacking python3-humanize (4.12.1-1) ... 152s Selecting previously unselected package python3-importlib-metadata. 152s Preparing to unpack .../48-python3-importlib-metadata_8.7.0-2_all.deb ... 152s Unpacking python3-importlib-metadata (8.7.0-2) ... 152s Selecting previously unselected package python3-markdown. 152s Preparing to unpack .../49-python3-markdown_3.8.2-2_all.deb ... 152s Unpacking python3-markdown (3.8.2-2) ... 152s Selecting previously unselected package python-matplotlib-data. 152s Preparing to unpack .../50-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 152s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 153s Selecting previously unselected package libopenjp2-7:armhf. 153s Preparing to unpack .../51-libopenjp2-7_2.5.3-2.1_armhf.deb ... 153s Unpacking libopenjp2-7:armhf (2.5.3-2.1) ... 153s Selecting previously unselected package python3-pil:armhf. 153s Preparing to unpack .../52-python3-pil_11.3.0-1ubuntu2_armhf.deb ... 153s Unpacking python3-pil:armhf (11.3.0-1ubuntu2) ... 153s Selecting previously unselected package python3.14-tk. 153s Preparing to unpack .../53-python3.14-tk_3.14.0-4_armhf.deb ... 153s Unpacking python3.14-tk (3.14.0-4) ... 153s Selecting previously unselected package python3.13-tk. 153s Preparing to unpack .../54-python3.13-tk_3.13.9-1_armhf.deb ... 153s Unpacking python3.13-tk (3.13.9-1) ... 153s Selecting previously unselected package python3-tk:armhf. 153s Preparing to unpack .../55-python3-tk_3.13.9-1_armhf.deb ... 153s Unpacking python3-tk:armhf (3.13.9-1) ... 153s Selecting previously unselected package python3-pil.imagetk:armhf. 153s Preparing to unpack .../56-python3-pil.imagetk_11.3.0-1ubuntu2_armhf.deb ... 153s Unpacking python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 153s Selecting previously unselected package python3-contourpy. 153s Preparing to unpack .../57-python3-contourpy_1.3.1-2_armhf.deb ... 153s Unpacking python3-contourpy (1.3.1-2) ... 153s Selecting previously unselected package python3-cycler. 153s Preparing to unpack .../58-python3-cycler_0.12.1-2_all.deb ... 153s Unpacking python3-cycler (0.12.1-2) ... 153s Selecting previously unselected package python3-brotli. 153s Preparing to unpack .../59-python3-brotli_1.1.0-2build6_armhf.deb ... 153s Unpacking python3-brotli (1.1.0-2build6) ... 153s Selecting previously unselected package python3-platformdirs. 153s Preparing to unpack .../60-python3-platformdirs_4.3.7-1_all.deb ... 153s Unpacking python3-platformdirs (4.3.7-1) ... 153s Selecting previously unselected package python3-fs. 153s Preparing to unpack .../61-python3-fs_2.4.16-8ubuntu1_all.deb ... 153s Unpacking python3-fs (2.4.16-8ubuntu1) ... 153s Selecting previously unselected package python3-lxml:armhf. 153s Preparing to unpack .../62-python3-lxml_6.0.2-1_armhf.deb ... 153s Unpacking python3-lxml:armhf (6.0.2-1) ... 153s Selecting previously unselected package python3-lz4. 153s Preparing to unpack .../63-python3-lz4_4.4.4+dfsg-3_armhf.deb ... 153s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 153s Selecting previously unselected package python3-decorator. 153s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 153s Unpacking python3-decorator (5.2.1-2) ... 153s Selecting previously unselected package python3-scipy. 153s Preparing to unpack .../65-python3-scipy_1.15.3-1ubuntu1_armhf.deb ... 153s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 154s Selecting previously unselected package python3-mpmath. 154s Preparing to unpack .../66-python3-mpmath_1.3.0-2_all.deb ... 154s Unpacking python3-mpmath (1.3.0-2) ... 154s Selecting previously unselected package python3-sympy. 154s Preparing to unpack .../67-python3-sympy_1.14.0-2_all.deb ... 154s Unpacking python3-sympy (1.14.0-2) ... 154s Selecting previously unselected package python3-ufolib2. 154s Preparing to unpack .../68-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 154s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 154s Selecting previously unselected package python3-unicodedata2. 154s Preparing to unpack .../69-python3-unicodedata2_16.0.0+ds-1build1_armhf.deb ... 154s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 154s Selecting previously unselected package python3-zopfli. 155s Preparing to unpack .../70-python3-zopfli_0.4.0-1_armhf.deb ... 155s Unpacking python3-zopfli (0.4.0-1) ... 155s Selecting previously unselected package unicode-data. 155s Preparing to unpack .../71-unicode-data_16.0.0-1_all.deb ... 155s Unpacking unicode-data (16.0.0-1) ... 155s Selecting previously unselected package python3-fonttools. 155s Preparing to unpack .../72-python3-fonttools_4.57.0-2build1_armhf.deb ... 155s Unpacking python3-fonttools (4.57.0-2build1) ... 155s Selecting previously unselected package python3-kiwisolver. 155s Preparing to unpack .../73-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 155s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 155s Selecting previously unselected package python3-matplotlib. 155s Preparing to unpack .../74-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 155s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 155s Selecting previously unselected package python3-pytz. 155s Preparing to unpack .../75-python3-pytz_2025.2-4_all.deb ... 155s Unpacking python3-pytz (2025.2-4) ... 155s Selecting previously unselected package python3-tz. 155s Preparing to unpack .../76-python3-tz_2025.2-4_all.deb ... 155s Unpacking python3-tz (2025.2-4) ... 156s Selecting previously unselected package python3-fastjsonschema. 156s Preparing to unpack .../77-python3-fastjsonschema_2.21.1-1_all.deb ... 156s Unpacking python3-fastjsonschema (2.21.1-1) ... 156s Selecting previously unselected package python3-traitlets. 156s Preparing to unpack .../78-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 156s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 156s Selecting previously unselected package python3-jupyter-core. 156s Preparing to unpack .../79-python3-jupyter-core_5.7.2-5_all.deb ... 156s Unpacking python3-jupyter-core (5.7.2-5) ... 156s Selecting previously unselected package python3-nbformat. 156s Preparing to unpack .../80-python3-nbformat_5.9.1-1_all.deb ... 156s Unpacking python3-nbformat (5.9.1-1) ... 156s Selecting previously unselected package python3-tenacity. 156s Preparing to unpack .../81-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 156s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 156s Selecting previously unselected package python3-plotly. 156s Preparing to unpack .../82-python3-plotly_5.20.0+dfsg-1_all.deb ... 156s Unpacking python3-plotly (5.20.0+dfsg-1) ... 157s Selecting previously unselected package python3-pyaml-env. 157s Preparing to unpack .../83-python3-pyaml-env_1.2.1-2_all.deb ... 157s Unpacking python3-pyaml-env (1.2.1-2) ... 157s Selecting previously unselected package python3-rich-click. 157s Preparing to unpack .../84-python3-rich-click_1.6.0-2_all.deb ... 157s Unpacking python3-rich-click (1.6.0-2) ... 157s Selecting previously unselected package python3-networkx. 157s Preparing to unpack .../85-python3-networkx_3.2.1-4ubuntu1_all.deb ... 157s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 158s Selecting previously unselected package python3-colormath. 158s Preparing to unpack .../86-python3-colormath_3.0.0-4_all.deb ... 158s Unpacking python3-colormath (3.0.0-4) ... 158s Selecting previously unselected package python3-spectra. 158s Preparing to unpack .../87-python3-spectra_0.1.0-1_all.deb ... 158s Unpacking python3-spectra (0.1.0-1) ... 158s Selecting previously unselected package python3-lzstring. 158s Preparing to unpack .../88-python3-lzstring_1.0.4-3_all.deb ... 158s Unpacking python3-lzstring (1.0.4-3) ... 158s Selecting previously unselected package multiqc. 158s Preparing to unpack .../89-multiqc_1.21+dfsg-2_all.deb ... 158s Unpacking multiqc (1.21+dfsg-2) ... 158s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 158s Setting up liblcms2-2:armhf (2.16-2) ... 158s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 158s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 158s Setting up python3-importlib-metadata (8.7.0-2) ... 158s Setting up libxrender1:armhf (1:0.9.12-1) ... 158s Setting up python3-lz4 (4.4.4+dfsg-3) ... 158s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 158s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 158s Setting up fonts-lyx (2.4.4-2) ... 158s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 158s Setting up x11-common (1:7.7+24ubuntu1) ... 159s Setting up libdeflate0:armhf (1.23-2) ... 159s Setting up libqhull-r8.0:armhf (2020.2-7) ... 159s Setting up python3-pytz (2025.2-4) ... 159s Setting up libgomp1:armhf (15.2.0-7ubuntu1) ... 159s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 159s Setting up python3-networkx (3.2.1-4ubuntu1) ... 160s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 160s Setting up python3-platformdirs (4.3.7-1) ... 161s Setting up python3-tz (2025.2-4) ... 161s Setting up python3-fs (2.4.16-8ubuntu1) ... 161s Setting up unicode-data (16.0.0-1) ... 161s Setting up python3-decorator (5.2.1-2) ... 161s Setting up libblas3:armhf (3.12.1-7) ... 161s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 161s Setting up python3-pyaml-env (1.2.1-2) ... 161s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 161s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 161s Setting up libzopfli1 (1.0.3-3) ... 161s Setting up python3-humanfriendly (10.0-6) ... 161s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 161s Setting up python3-brotli (1.1.0-2build6) ... 161s Setting up python3-cycler (0.12.1-2) ... 162s Setting up libimagequant0:armhf (2.18.0-1build1) ... 162s Setting up fonts-dejavu-mono (2.37-8) ... 162s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 162s Setting up python3-numpy-dev:armhf (1:2.3.4+ds-3ubuntu1) ... 162s Setting up python3-markdown (3.8.2-2) ... 162s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 162s Setting up fonts-dejavu-core (2.37-8) ... 162s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 162s Setting up libgfortran5:armhf (15.2.0-7ubuntu1) ... 162s Setting up libwebp7:armhf (1.5.0-0.1) ... 162s Setting up python3-rich-click (1.6.0-2) ... 162s Setting up python3-fastjsonschema (2.21.1-1) ... 162s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 162s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 162s Setting up libopenjp2-7:armhf (2.5.3-2.1) ... 162s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 162s Setting up libxss1:armhf (1:1.2.3-1build3) ... 162s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 162s Setting up python3-mpmath (1.3.0-2) ... 163s Setting up python3-lzstring (1.0.4-3) ... 163s Setting up python3-humanize (4.12.1-1) ... 163s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 163s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 163s Setting up python3-coloredlogs (15.0.1-1) ... 163s Setting up python3-jupyter-core (5.7.2-5) ... 163s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 163s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 163s Setting up python3-sympy (1.14.0-2) ... 170s Setting up liblapack3:armhf (3.12.1-7) ... 170s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 170s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 170s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 170s Setting up python3-nbformat (5.9.1-1) ... 171s Setting up python3-zopfli (0.4.0-1) ... 171s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 171s Setting up libjs-jquery-metadata (12-4) ... 171s Setting up libraqm0:armhf (0.10.3-1) ... 171s Setting up python3-plotly (5.20.0+dfsg-1) ... 178s Setting up python3-numpy (1:2.3.4+ds-3ubuntu1) ... 180s Setting up python3-colormath (3.0.0-4) ... 180s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 180s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 180s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 180s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 180s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 180s :param sigma: :math:`\sigma` 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 180s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 180s logger.debug(" \- Target RGB space: %s", target_rgb) 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 180s logger.debug(" \- Target native illuminant: %s", target_illum) 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 180s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 180s logger.debug(" \* Applying transformation from %s to %s ", 180s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 180s logger.debug(" \* New values: %.3f, %.3f, %.3f", 180s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 180s logger.debug(" \- Original illuminant: %s", self.illuminant) 180s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 180s logger.debug(" \- Target illuminant: %s", target_illuminant) 180s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 180s logger.debug(" \* Applying transformation from %s to %s ", 180s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 180s Setting up python3-lxml:armhf (6.0.2-1) ... 180s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 180s Setting up python3-contourpy (1.3.1-2) ... 181s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 181s Setting up libxft2:armhf (2.3.6-1build1) ... 181s Setting up python3-scipy (1.15.3-1ubuntu1) ... 184s Setting up python3-spectra (0.1.0-1) ... 185s Setting up libtk8.6:armhf (8.6.17-1) ... 185s Setting up python3.13-tk (3.13.9-1) ... 185s Setting up python3-pil:armhf (11.3.0-1ubuntu2) ... 185s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 185s Setting up python3.14-tk (3.14.0-4) ... 185s Setting up blt (2.5.3+dfsg-8) ... 185s Setting up python3-tk:armhf (3.13.9-1) ... 185s Setting up python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 185s Setting up python3-fonttools (4.57.0-2build1) ... 186s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 186s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 188s Setting up multiqc (1.21+dfsg-2) ... 189s Processing triggers for libc-bin (2.42-2ubuntu2) ... 189s Processing triggers for man-db (2.13.1-1) ... 198s autopkgtest [02:47:34]: test run-unit-test: [----------------------- 200s 200s /// MultiQC 🔍 | v1.21 200s 200s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 200s 200s MultiQC aggregates results from bioinformatics analyses across many samples 201s into a single report. 201s It searches a given directory for analysis logs and compiles a HTML report. 201s It's a general use tool, perfect for summarising the output from numerous 201s bioinformatics tools. 201s To run, supply with one or more directory to scan for analysis results. For 201s example, to run in the current working directory, use 'multiqc .' 201s 201s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 201s │ --force -f Overwrite any existing reports │ 201s │ --config -c Specific config file to load, after those in MultiQC │ 201s │ dir / home dir / working dir. │ 201s │ (PATH) │ 201s │ --cl-config Specify MultiQC config YAML on the command line │ 201s │ (TEXT) │ 201s │ --filename -n Report filename. Use 'stdout' to print to standard │ 201s │ out. │ 201s │ (TEXT) │ 201s │ --outdir -o Create report in the specified output directory. │ 201s │ (TEXT) │ 201s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 201s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 201s │ --ignore-symlinks Ignore symlinked directories and files │ 201s │ --file-list -l Supply a file containing a list of file paths to be │ 201s │ searched, one per row │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 201s │ --module -m Use only this module. Can specify multiple times. │ 201s │ (MODULE NAME) │ 201s │ --exclude -e Do not use this module. Can specify multiple times. │ 201s │ (MODULE NAME) │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 201s │ --dirs -d Prepend directory to sample names │ 201s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 201s │ to take from start of path. │ 201s │ (INTEGER) │ 201s │ --fullnames -s Do not clean the sample names (leave as full file │ 201s │ name) │ 201s │ --fn_as_s_name Use the log filename as the sample name │ 201s │ --replace-names TSV file to rename sample names during report │ 201s │ generation │ 201s │ (PATH) │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 201s │ --title -i Report title. Printed as page header, used for │ 201s │ filename if not otherwise specified. │ 201s │ (TEXT) │ 201s │ --comment -b Custom comment, will be printed at the top of the │ 201s │ report. │ 201s │ (TEXT) │ 201s │ --template -t Report template to use. │ 201s │ (default|gathered|geo|highcharts|sections|simple) │ 201s │ --sample-names TSV file containing alternative sample names for │ 201s │ renaming buttons in the report │ 201s │ (PATH) │ 201s │ --sample-filters TSV file containing show/hide patterns for the report │ 201s │ (PATH) │ 201s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 201s │ --flat -fp Use only flat plots (static images) │ 201s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 201s │ --export -p Export plots as static images in addition to the report │ 201s │ --data-dir Force the parsed data directory to be created. │ 201s │ --no-data-dir Prevent the parsed data directory from being created. │ 201s │ --data-format -k Output parsed data in a different format. │ 201s │ (tsv|csv|json|yaml) │ 201s │ --zip-data-dir -z Compress the data directory. │ 201s │ --no-report Do not generate a report, only export data and plots │ 201s │ --pdf Creates PDF report with the 'simple' template. Requires │ 201s │ Pandoc to be installed. │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 201s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 201s │ --quiet -q Only show log warnings │ 201s │ --strict Don't catch exceptions, run additional code checks │ 201s │ to help development. │ 201s │ --development,--dev Development mode. Do not compress and minimise JS, │ 201s │ export uncompressed plot data │ 201s │ --require-logs Require all explicitly requested modules to have │ 201s │ log files. If not, MultiQC will exit with an error. │ 201s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 201s │ the report │ 201s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 201s │ MegaQC options are found │ 201s │ --no-ansi Disable coloured log output │ 201s │ --version Show the version and exit. │ 201s │ --help -h Show this message and exit. │ 201s ╰──────────────────────────────────────────────────────────────────────────────╯ 201s 201s See http://multiqc.info for more details. 201s 201s FIXME: The test data should be delivered in a separate binary package once freeze is over 201s 201s /// MultiQC 🔍 | v1.21 201s 201s | multiqc | MultiQC Version v1.32 now available! 201s | multiqc | Search path : /tmp/autopkgtest.PSI8Hg/autopkgtest_tmp/data 202s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 202s | feature_counts | Found 8 reports 202s | star | Found 8 reports 202s | cutadapt | Found 16 reports 202s | fastqc | Found 32 reports 203s | multiqc | Report : multiqc_report.html 203s | multiqc | Data : multiqc_data 203s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpvzarj6u3/assets/js/packages/jszip.min.js' 203s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpvzarj6u3/assets/js/packages/plotly-2.27.0.min.js' 203s | multiqc | MultiQC complete 203s -e 203s PASS 203s 203s autopkgtest [02:47:39]: test run-unit-test: -----------------------] 207s autopkgtest [02:47:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 207s run-unit-test PASS 211s autopkgtest [02:47:47]: @@@@@@@@@@@@@@@@@@@@ summary 211s run-unit-test PASS