0s autopkgtest [06:42:20]: starting date and time: 2026-02-05 06:42:20+0000 0s autopkgtest [06:42:20]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [06:42:20]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ulbc3mxx/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade mothur --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- lxd -r lxd-armhf-10.145.243.210 lxd-armhf-10.145.243.210:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [06:42:42]: testbed dpkg architecture: armhf 25s autopkgtest [06:42:45]: testbed apt version: 3.1.14 29s autopkgtest [06:42:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 31s autopkgtest [06:42:51]: testbed release detected to be: None 40s autopkgtest [06:42:59]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 42s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 42s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 42s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 42s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 44s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 44s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 44s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 44s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [253 kB] 44s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1418 kB] 45s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9664 B] 45s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 49s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB] 49s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 50s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 53s Fetched 43.1 MB in 12s (3708 kB/s) 54s Reading package lists... 60s autopkgtest [06:43:20]: upgrading testbed (apt dist-upgrade and autopurge) 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 64s Calculating upgrade... 64s The following packages will be upgraded: 64s libc-bin libc-gconv-modules-extra libc6 locales 65s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 7850 kB of archives. 65s After this operation, 0 B of additional disk space will be used. 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 65s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 65s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 65s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 66s Preconfiguring packages ... 66s Fetched 7850 kB in 1s (7547 kB/s) 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 67s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 67s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 67s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 67s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 67s readlink: /usr/lib/libeatmydata: No such file or directory 67s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 67s Setting up libc6:armhf (2.42-2ubuntu5) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 67s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 67s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 67s Setting up libc-bin (2.42-2ubuntu5) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 68s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 68s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 69s Setting up locales (2.42-2ubuntu5) ... 70s Generating locales (this might take a while)... 73s en_US.UTF-8... done 73s Generation complete. 73s Processing triggers for systemd (259-1ubuntu3) ... 74s Processing triggers for man-db (2.13.1-1) ... 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Solving dependencies... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [06:43:40]: rebooting testbed after setup commands that affected boot 124s autopkgtest [06:44:24]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 154s autopkgtest [06:44:54]: @@@@@@@@@@@@@@@@@@@@ apt-source mothur 167s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (dsc) [2074 B] 167s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (tar) [1654 kB] 167s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (diff) [21.7 kB] 167s gpgv: Signature made Mon Jan 26 19:31:04 2026 UTC 167s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 167s gpgv: Can't check signature: No public key 167s dpkg-source: warning: cannot verify inline signature for ./mothur_1.48.1-1build1.dsc: no acceptable signature found 168s autopkgtest [06:45:08]: testing package mothur version 1.48.1-1build1 170s autopkgtest [06:45:10]: build not needed 183s autopkgtest [06:45:23]: test run-unit-test: preparing testbed 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Solving dependencies... 186s The following NEW packages will be installed: 186s mothur 187s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 187s Need to get 5424 kB of archives. 187s After this operation, 11.5 MB of additional disk space will be used. 187s Get:1 http://ftpmaster.internal/ubuntu resolute/universe armhf mothur armhf 1.48.1-1build1 [5424 kB] 192s Fetched 5424 kB in 5s (1134 kB/s) 192s Selecting previously unselected package mothur. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 192s Preparing to unpack .../mothur_1.48.1-1build1_armhf.deb ... 192s Unpacking mothur (1.48.1-1build1) ... 192s Setting up mothur (1.48.1-1build1) ... 192s Processing triggers for man-db (2.13.1-1) ... 201s autopkgtest [06:45:41]: test run-unit-test: [----------------------- 203s Linux version 203s 203s Using ReadLine 203s mothur v.1.48.1 203s Last updated: 5/15/24 203s by 203s Patrick D. Schloss 203s 203s Department of Microbiology & Immunology 203s 203s University of Michigan 203s http://www.mothur.org 203s 203s When using, please cite: 203s Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. 203s 203s Distributed under the GNU General Public License 203s 203s Type 'help()' for information on the commands that are available 203s 203s For questions and analysis support, please visit our forum at https://forum.mothur.org 203s 203s Type 'quit()' to exit program 203s 203s [NOTE]: Setting random seed to 19760620. 203s 203s Batch Mode 203s 203s 203s 203s mothur > unique.seqs(fasta=HA.fasta) 203s 599 259 203s 203s Output File Names: 203s HA.unique.fasta 203s HA.count_table 203s 203s 203s mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01) 203s 203s Using 8 processors. 203s 203s Sequence Time Num_Dists_Below_Cutoff 203s 0 0 0 203s 100 0 955 203s 90 0 4070 203s 157 0 4143 203s 128 0 4158 203s 182 0 4246 203s 223 0 4267 203s 241 0 4176 203s 200 0 3443 203s 203 0 4047 203s 258 0 3475 203s 203s It took 0 secs to find distances for 259 sequences. 32582 distances below cutoff 0.01. 203s 203s 203s Output File Names: 203s HA.unique.dist 203s 203s 203s mothur > cluster(method=furthest, column=HA.unique.dist, count=current, cutoff=0.01, precision=1000) 203s Using HA.count_table as input file for the count parameter. 203s 203s Using 8 processors. 203s unique 154 211 18 2 6 0 4 2 0 2 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.001 155 161 28 5 3 4 2 4 0 0 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.002 206 56 9 8 2 0 4 2 2 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.003 236 26 4 2 1 1 0 2 2 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.004 270 15 3 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.005 272 7 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.006 274 5 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.007 274 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.008 552 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s 0.009 592 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 203s It took 0 seconds to cluster 203s 203s Output File Names: 203s HA.unique.fn.list 203s 203s 203s mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao, label=unique-0.001-0.003-0.005-0.008) 203s unique 203s 0.001 203s 0.003 203s 0.005 203s 0.008 203s 203s Output File Names: 203s HA.unique.fn.summary 203s 203s 203s mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003) 203s Using HA.unique.fn.list as input file for the list parameter. 203s unique 203s 0.001 203s 0.003 203s 203s Output File Names: 203s HA.unique.fn.unique.heatmap.bin.svg 203s HA.unique.fn.0.001.heatmap.bin.svg 203s HA.unique.fn.0.003.heatmap.bin.svg 203s HA.unique.fn.0.004.heatmap.bin.svg 203s HA.unique.fn.0.005.heatmap.bin.svg 203s HA.unique.fn.0.006.heatmap.bin.svg 203s HA.unique.fn.0.007.heatmap.bin.svg 203s HA.unique.fn.0.008.heatmap.bin.svg 203s HA.unique.fn.0.009.heatmap.bin.svg 203s 204s 204s mothur > rarefaction.single(calc=sobs-chao, label=unique-0.001-0.003, freq=10) 204s Using HA.unique.fn.list as input file for the list parameter. 204s 204s Using 8 processors. 204s unique 204s 0.001 204s 0.003 204s 204s It took 1 secs to run rarefaction.single. 204s 204s Output File Names: 204s HA.unique.fn.rarefaction 204s HA.unique.fn.r_chao 204s 204s 204s mothur > quit() 204s 204s 204s It took 1 seconds to run 7 commands from test.batch batch file. 204s 204s Logfile : mothur.1770273943.logfile 204s 204s autopkgtest [06:45:44]: test run-unit-test: -----------------------] 209s autopkgtest [06:45:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 209s run-unit-test PASS 213s autopkgtest [06:45:52]: @@@@@@@@@@@@@@@@@@@@ summary 213s run-unit-test PASS