0s autopkgtest [06:38:08]: starting date and time: 2026-02-05 06:38:08+0000 0s autopkgtest [06:38:08]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [06:38:08]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c080x9c7/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade mira --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- lxd -r lxd-armhf-10.145.243.176 lxd-armhf-10.145.243.176:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [06:38:29]: testbed dpkg architecture: armhf 23s autopkgtest [06:38:31]: testbed apt version: 3.1.14 27s autopkgtest [06:38:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [06:38:37]: testbed release detected to be: None 37s autopkgtest [06:38:45]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 40s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 40s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 40s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 40s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 40s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 40s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 40s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 40s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [253 kB] 40s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1418 kB] 40s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9664 B] 40s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 41s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB] 41s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1374 kB] 41s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 44s Fetched 43.1 MB in 5s (8700 kB/s) 45s Reading package lists... 51s autopkgtest [06:38:59]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s The following packages will be upgraded: 54s libc-bin libc-gconv-modules-extra libc6 locales 55s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 7850 kB of archives. 55s After this operation, 0 B of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 55s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 55s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 55s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 56s Preconfiguring packages ... 56s Fetched 7850 kB in 1s (7097 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 56s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 56s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 56s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 56s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 57s readlink: /usr/lib/libeatmydata: No such file or directory 57s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 57s Setting up libc6:armhf (2.42-2ubuntu5) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 57s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 57s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 57s Setting up libc-bin (2.42-2ubuntu5) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 57s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 57s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 57s Setting up locales (2.42-2ubuntu5) ... 58s Generating locales (this might take a while)... 60s en_US.UTF-8... done 60s Generation complete. 60s Processing triggers for systemd (259-1ubuntu3) ... 61s Processing triggers for man-db (2.13.1-1) ... 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Solving dependencies... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [06:39:15]: rebooting testbed after setup commands that affected boot 108s autopkgtest [06:39:56]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 136s autopkgtest [06:40:24]: @@@@@@@@@@@@@@@@@@@@ apt-source mira 160s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (dsc) [2441 B] 160s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (tar) [15.0 MB] 160s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (diff) [34.0 kB] 160s gpgv: Signature made Wed Aug 6 15:08:30 2025 UTC 160s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 160s gpgv: Can't check signature: No public key 160s dpkg-source: warning: cannot verify inline signature for ./mira_4.9.6-11build2.dsc: no acceptable signature found 164s autopkgtest [06:40:50]: testing package mira version 4.9.6-11build2 167s autopkgtest [06:40:55]: build not needed 222s autopkgtest [06:41:50]: test run-unit-test: preparing testbed 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 226s Solving dependencies... 227s The following NEW packages will be installed: 227s libboost-filesystem1.88.0 libboost-thread1.88.0 libgomp1 mira-assembler 227s mira-doc mira-rfam-12s-rrna 227s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 16.5 MB of archives. 227s After this operation, 24.7 MB of additional disk space will be used. 227s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libboost-filesystem1.88.0 armhf 1.88.0-1.4ubuntu3 [286 kB] 227s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libboost-thread1.88.0 armhf 1.88.0-1.4ubuntu3 [268 kB] 228s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 228s Get:4 http://ftpmaster.internal/ubuntu resolute/universe armhf mira-assembler armhf 4.9.6-11build2 [2563 kB] 229s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf mira-rfam-12s-rrna all 4.9.6-11build2 [10.4 MB] 230s Get:6 http://ftpmaster.internal/ubuntu resolute/universe armhf mira-doc all 4.9.6-11build2 [2817 kB] 231s Fetched 16.5 MB in 3s (4724 kB/s) 231s Selecting previously unselected package libboost-filesystem1.88.0:armhf. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 231s Preparing to unpack .../libboost-filesystem1.88.0_1.88.0-1.4ubuntu3_armhf.deb ... 231s Unpacking libboost-filesystem1.88.0:armhf (1.88.0-1.4ubuntu3) ... 231s Selecting previously unselected package libboost-thread1.88.0:armhf. 231s Preparing to unpack .../libboost-thread1.88.0_1.88.0-1.4ubuntu3_armhf.deb ... 231s Unpacking libboost-thread1.88.0:armhf (1.88.0-1.4ubuntu3) ... 231s Selecting previously unselected package libgomp1:armhf. 231s Preparing to unpack .../libgomp1_15.2.0-12ubuntu1_armhf.deb ... 231s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 231s Selecting previously unselected package mira-assembler. 231s Preparing to unpack .../mira-assembler_4.9.6-11build2_armhf.deb ... 231s Unpacking mira-assembler (4.9.6-11build2) ... 231s Setting up libboost-filesystem1.88.0:armhf (1.88.0-1.4ubuntu3) ... 231s Setting up libboost-thread1.88.0:armhf (1.88.0-1.4ubuntu3) ... 231s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 231s Setting up mira-assembler (4.9.6-11build2) ... 232s Selecting previously unselected package mira-rfam-12s-rrna. 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68448 files and directories currently installed.) 232s Preparing to unpack .../mira-rfam-12s-rrna_4.9.6-11build2_all.deb ... 232s Unpacking mira-rfam-12s-rrna (4.9.6-11build2) ... 232s Selecting previously unselected package mira-doc. 232s Preparing to unpack .../mira-doc_4.9.6-11build2_all.deb ... 232s Unpacking mira-doc (4.9.6-11build2) ... 232s Setting up mira-doc (4.9.6-11build2) ... 232s Setting up mira-rfam-12s-rrna (4.9.6-11build2) ... 232s readlink: /usr/bin/mira: Invalid argument 232s Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in 232s /usr/bin/../share/mira/mhs 232s 232s Installing. This can take a minute or two, please be patient. 277s Done. 277s 277s MIRA can now use the functionality to filter for rRNA during assemblies. 277s MIRABAIT can now use the '-j rrna' option. 277s Processing triggers for man-db (2.13.1-1) ... 278s Processing triggers for libc-bin (2.42-2ubuntu5) ... 290s autopkgtest [06:42:58]: test run-unit-test: [----------------------- 318s autopkgtest [06:43:26]: test run-unit-test: -----------------------] 322s run-unit-test PASS 322s autopkgtest [06:43:30]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 328s autopkgtest [06:43:36]: @@@@@@@@@@@@@@@@@@@@ summary 328s run-unit-test PASS