0s autopkgtest [18:48:33]: starting date and time: 2026-01-22 18:48:33+0000 0s autopkgtest [18:48:33]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [18:48:33]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.646d0gkm/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- lxd -r lxd-armhf-10.145.243.52 lxd-armhf-10.145.243.52:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [18:48:55]: testbed dpkg architecture: armhf 24s autopkgtest [18:48:57]: testbed apt version: 3.1.12 28s autopkgtest [18:49:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [18:49:03]: testbed release detected to be: None 38s autopkgtest [18:49:11]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 40s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 40s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 40s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 41s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 41s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 41s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 41s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 41s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [97.4 kB] 41s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [571 kB] 41s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [3644 B] 41s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1402 kB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 45s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [14.9 MB] 45s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 48s Fetched 41.6 MB in 8s (4947 kB/s) 49s Reading package lists... 56s autopkgtest [18:49:28]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s Calculating upgrade... 60s The following packages were automatically installed and are no longer required: 60s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 60s Use 'apt autoremove' to remove them. 60s The following NEW packages will be installed: 60s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 60s The following packages will be upgraded: 60s libpython3-stdlib python3 python3-gdbm python3-minimal 60s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 6219 kB of archives. 60s After this operation, 22.5 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 62s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 62s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 62s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 62s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 62s Fetched 6219 kB in 1s (5975 kB/s) 62s Selecting previously unselected package libpython3.14-minimal:armhf. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 62s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 62s Selecting previously unselected package python3.14-minimal. 62s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking python3.14-minimal (3.14.2-1) ... 62s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 62s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 62s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 62s Setting up python3.14-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 64s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 64s Setting up python3-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3_3.14.2-1_armhf.deb ... 65s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 65s Selecting previously unselected package libpython3.14-stdlib:armhf. 65s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_armhf.deb ... 65s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 65s Selecting previously unselected package python3.14. 65s Preparing to unpack .../python3.14_3.14.2-1_armhf.deb ... 65s Unpacking python3.14 (3.14.2-1) ... 65s Preparing to unpack .../libpython3-stdlib_3.14.2-1_armhf.deb ... 65s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 65s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 65s Setting up python3.14 (3.14.2-1) ... 68s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 69s Setting up python3-gdbm (3.14.2-1) ... 69s Setting up python3 (3.14.2-1) ... 69s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for systemd (259-1ubuntu2) ... 69s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Solving dependencies... 71s The following packages will be REMOVED: 71s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 71s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 71s After this operation, 21.3 MB disk space will be freed. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 71s Removing python3.13 (3.13.11-1) ... 71s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 71s Removing python3.13-minimal (3.13.11-1) ... 72s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 72s Processing triggers for man-db (2.13.1-1) ... 73s Processing triggers for systemd (259-1ubuntu2) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 73s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 73s Purging configuration files for python3.13-minimal (3.13.11-1) ... 76s autopkgtest [18:49:49]: rebooting testbed after setup commands that affected boot 124s autopkgtest [18:50:37]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 154s autopkgtest [18:51:07]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 166s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (dsc) [2234 B] 166s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (tar) [6613 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (diff) [7588 B] 167s gpgv: Signature made Tue Dec 16 20:01:30 2025 UTC 167s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 167s gpgv: Can't check signature: No public key 167s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3build1.dsc: no acceptable signature found 167s autopkgtest [18:51:20]: testing package mcaller version 1.0.3+git20210624.b415090-3build1 170s autopkgtest [18:51:23]: build not needed 173s autopkgtest [18:51:26]: test run-unit-test: preparing testbed 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s Solving dependencies... 176s The following NEW packages will be installed: 176s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 176s fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 176s libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 176s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 176s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 176s liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 176s libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 176s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 176s libxss1 libzopfli1 mcaller python-matplotlib-data python3-biopython 176s python3-brotli python3-cairo python3-charset-normalizer python3-contourpy 176s python3-cycler python3-decorator python3-fonttools python3-freetype 176s python3-h5py python3-h5py-serial python3-joblib python3-kiwisolver 176s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 176s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 176s python3-pil.imagetk python3-pysam python3-pytz python3-reportlab 176s python3-rlpycairo python3-scipy python3-seaborn python3-sklearn 176s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 176s python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 176s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 176s xfonts-encodings xfonts-utils xml-core 176s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 115 MB of archives. 176s After this operation, 494 MB of additional disk space will be used. 176s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 177s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 177s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-11ubuntu1 [334 kB] 177s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 177s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 177s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build2 [11.7 kB] 177s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 177s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 177s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 177s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7build1 [91.0 kB] 177s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8build1 [10.9 MB] 178s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.4ubuntu1 [38.2 kB] 178s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-extra all 2.37-8build1 [1944 kB] 178s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.5.0~RC2-3 [171 kB] 178s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.4-2 [21.1 kB] 178s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.4ubuntu1 [116 kB] 178s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 178s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 178s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 178s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 178s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 178s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 178s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-11ubuntu1 [129 kB] 178s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 178s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.0-4 [507 kB] 178s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.4-2 [5322 B] 178s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.5+repack-4 [1422 kB] 178s Get:30 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-4 [58.7 kB] 178s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 178s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf libhts3t64 armhf 1.22.1+ds2-1 [408 kB] 178s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 178s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 178s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 178s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 178s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 178s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf liblzf1 armhf 3.6-4build1 [6592 B] 178s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 178s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 178s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 178s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 178s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 178s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 178s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 178s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 178s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 178s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 178s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1build1 [11.7 kB] 178s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1build1 [22.4 kB] 178s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 178s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3 [91.7 kB] 178s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sklearn-lib armhf 1.7.2+dfsg-4 [4179 kB] 179s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-joblib all 1.5.2-1 [210 kB] 179s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 179s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.16.3-3 [18.2 MB] 179s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-threadpoolctl all 3.1.0-1build1 [20.7 kB] 179s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sklearn all 1.7.2+dfsg-4 [2616 kB] 179s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-h5py-serial armhf 3.15.1-4 [1562 kB] 179s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-h5py all 3.15.1-4 [11.3 kB] 179s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.4-2 [167 kB] 179s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.11-1 [104 kB] 179s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.2-1 [105 kB] 179s Get:64 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-tk armhf 3.14.2-1 [11.2 kB] 179s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 12.0.0-1ubuntu1 [9168 B] 179s Get:66 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 179s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 179s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 179s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 179s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 179s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.9-1 [1149 kB] 180s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 180s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19build1 [20.3 kB] 180s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3build1 [278 kB] 180s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.86+dfsg-1 [1652 kB] 180s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 180s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.3-1 [268 kB] 180s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 180s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 180s Get:80 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 180s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.5+dfsg-1 [26.1 kB] 180s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 180s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 180s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 180s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-unicodedata2 armhf 16.0.0+ds-1build1 [394 kB] 180s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 180s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1build1 [9543 kB] 180s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.61.1-3 [1697 kB] 180s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 180s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 181s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 181s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 181s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 181s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-seaborn all 0.13.2-6 [225 kB] 181s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pysam armhf 0.23.3+ds-2 [4358 kB] 181s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf mcaller all 1.0.3+git20210624.b415090-3build1 [19.5 kB] 182s Fetched 115 MB in 5s (23.3 MB/s) 182s Selecting previously unselected package python3-numpy-dev:armhf. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 182s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 182s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 182s Selecting previously unselected package libblas3:armhf. 182s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_armhf.deb ... 182s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 182s Selecting previously unselected package libgfortran5:armhf. 182s Preparing to unpack .../02-libgfortran5_15.2.0-11ubuntu1_armhf.deb ... 182s Unpacking libgfortran5:armhf (15.2.0-11ubuntu1) ... 182s Selecting previously unselected package liblapack3:armhf. 182s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 182s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 182s Selecting previously unselected package python3-numpy. 182s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 182s Unpacking python3-numpy (1:2.3.5+ds-3) ... 182s Selecting previously unselected package fonts-dejavu-mono. 182s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 182s Unpacking fonts-dejavu-mono (2.37-8build1) ... 182s Selecting previously unselected package fonts-dejavu-core. 182s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 182s Unpacking fonts-dejavu-core (2.37-8build1) ... 182s Selecting previously unselected package libfontenc1:armhf. 182s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build2_armhf.deb ... 182s Unpacking libfontenc1:armhf (1:1.1.8-1build2) ... 182s Selecting previously unselected package libfreetype6:armhf. 182s Preparing to unpack .../08-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 182s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 182s Selecting previously unselected package x11-common. 182s Preparing to unpack .../09-x11-common_1%3a7.7+24ubuntu1_all.deb ... 182s Unpacking x11-common (1:7.7+24ubuntu1) ... 182s Selecting previously unselected package xfonts-encodings. 183s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 183s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 183s Selecting previously unselected package xfonts-utils. 183s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7build1_armhf.deb ... 183s Unpacking xfonts-utils (1:7.7+7build1) ... 183s Selecting previously unselected package fonts-urw-base35. 183s Preparing to unpack .../12-fonts-urw-base35_20200910-8build1_all.deb ... 183s Unpacking fonts-urw-base35 (20200910-8build1) ... 183s Selecting previously unselected package fontconfig-config. 183s Preparing to unpack .../13-fontconfig-config_2.15.0-2.4ubuntu1_armhf.deb ... 184s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 184s Selecting previously unselected package fonts-dejavu-extra. 184s Preparing to unpack .../14-fonts-dejavu-extra_2.37-8build1_all.deb ... 184s Unpacking fonts-dejavu-extra (2.37-8build1) ... 184s Selecting previously unselected package fonts-lyx. 184s Preparing to unpack .../15-fonts-lyx_2.5.0~RC2-3_all.deb ... 184s Unpacking fonts-lyx (2.5.0~RC2-3) ... 184s Selecting previously unselected package libaec0:armhf. 184s Preparing to unpack .../16-libaec0_1.1.4-2_armhf.deb ... 184s Unpacking libaec0:armhf (1.1.4-2) ... 184s Selecting previously unselected package libfontconfig1:armhf. 184s Preparing to unpack .../17-libfontconfig1_2.15.0-2.4ubuntu1_armhf.deb ... 184s Unpacking libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 184s Selecting previously unselected package libpixman-1-0:armhf. 184s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_armhf.deb ... 184s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 184s Selecting previously unselected package libxcb-render0:armhf. 184s Preparing to unpack .../19-libxcb-render0_1.17.0-2build1_armhf.deb ... 184s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 184s Selecting previously unselected package libxcb-shm0:armhf. 184s Preparing to unpack .../20-libxcb-shm0_1.17.0-2build1_armhf.deb ... 184s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 184s Selecting previously unselected package libxrender1:armhf. 184s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_armhf.deb ... 184s Unpacking libxrender1:armhf (1:0.9.12-1) ... 184s Selecting previously unselected package libcairo2:armhf. 184s Preparing to unpack .../22-libcairo2_1.18.4-3_armhf.deb ... 184s Unpacking libcairo2:armhf (1.18.4-3) ... 184s Selecting previously unselected package libdeflate0:armhf. 184s Preparing to unpack .../23-libdeflate0_1.23-2_armhf.deb ... 184s Unpacking libdeflate0:armhf (1.23-2) ... 184s Selecting previously unselected package libgomp1:armhf. 184s Preparing to unpack .../24-libgomp1_15.2.0-11ubuntu1_armhf.deb ... 184s Unpacking libgomp1:armhf (15.2.0-11ubuntu1) ... 184s Selecting previously unselected package libgraphite2-3:armhf. 184s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 184s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 184s Selecting previously unselected package libharfbuzz0b:armhf. 184s Preparing to unpack .../26-libharfbuzz0b_12.3.0-4_armhf.deb ... 184s Unpacking libharfbuzz0b:armhf (12.3.0-4) ... 184s Selecting previously unselected package libsz2:armhf. 184s Preparing to unpack .../27-libsz2_1.1.4-2_armhf.deb ... 184s Unpacking libsz2:armhf (1.1.4-2) ... 184s Selecting previously unselected package libhdf5-310:armhf. 184s Preparing to unpack .../28-libhdf5-310_1.14.5+repack-4_armhf.deb ... 184s Unpacking libhdf5-310:armhf (1.14.5+repack-4) ... 184s Selecting previously unselected package libhdf5-hl-310:armhf. 184s Preparing to unpack .../29-libhdf5-hl-310_1.14.5+repack-4_armhf.deb ... 184s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-4) ... 184s Selecting previously unselected package libhtscodecs2:armhf. 184s Preparing to unpack .../30-libhtscodecs2_1.6.1-2_armhf.deb ... 184s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 184s Selecting previously unselected package libhts3t64:armhf. 184s Preparing to unpack .../31-libhts3t64_1.22.1+ds2-1_armhf.deb ... 184s Unpacking libhts3t64:armhf (1.22.1+ds2-1) ... 184s Selecting previously unselected package libimagequant0:armhf. 184s Preparing to unpack .../32-libimagequant0_2.18.0-1build1_armhf.deb ... 184s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 185s Selecting previously unselected package libjpeg-turbo8:armhf. 185s Preparing to unpack .../33-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 185s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 185s Selecting previously unselected package libjpeg8:armhf. 185s Preparing to unpack .../34-libjpeg8_8c-2ubuntu11_armhf.deb ... 185s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 185s Selecting previously unselected package liblcms2-2:armhf. 185s Preparing to unpack .../35-liblcms2-2_2.17-1_armhf.deb ... 185s Unpacking liblcms2-2:armhf (2.17-1) ... 185s Selecting previously unselected package liblerc4:armhf. 185s Preparing to unpack .../36-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 185s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 185s Selecting previously unselected package liblzf1:armhf. 185s Preparing to unpack .../37-liblzf1_3.6-4build1_armhf.deb ... 185s Unpacking liblzf1:armhf (3.6-4build1) ... 185s Selecting previously unselected package libqhull-r8.0:armhf. 185s Preparing to unpack .../38-libqhull-r8.0_2020.2-8_armhf.deb ... 185s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 185s Selecting previously unselected package libraqm0:armhf. 185s Preparing to unpack .../39-libraqm0_0.10.3-1_armhf.deb ... 185s Unpacking libraqm0:armhf (0.10.3-1) ... 185s Selecting previously unselected package libsharpyuv0:armhf. 185s Preparing to unpack .../40-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 185s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 185s Selecting previously unselected package libtcl8.6:armhf. 185s Preparing to unpack .../41-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 185s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 185s Selecting previously unselected package libjbig0:armhf. 185s Preparing to unpack .../42-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 185s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 185s Selecting previously unselected package libwebp7:armhf. 185s Preparing to unpack .../43-libwebp7_1.5.0-0.1build1_armhf.deb ... 185s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 185s Selecting previously unselected package libtiff6:armhf. 185s Preparing to unpack .../44-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 185s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 185s Selecting previously unselected package libxft2:armhf. 185s Preparing to unpack .../45-libxft2_2.3.6-1build2_armhf.deb ... 185s Unpacking libxft2:armhf (2.3.6-1build2) ... 185s Selecting previously unselected package libxss1:armhf. 185s Preparing to unpack .../46-libxss1_1%3a1.2.3-1build4_armhf.deb ... 185s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 185s Selecting previously unselected package libtk8.6:armhf. 185s Preparing to unpack .../47-libtk8.6_8.6.17-1_armhf.deb ... 185s Unpacking libtk8.6:armhf (8.6.17-1) ... 185s Selecting previously unselected package libwebpdemux2:armhf. 185s Preparing to unpack .../48-libwebpdemux2_1.5.0-0.1build1_armhf.deb ... 185s Unpacking libwebpdemux2:armhf (1.5.0-0.1build1) ... 185s Selecting previously unselected package libwebpmux3:armhf. 185s Preparing to unpack .../49-libwebpmux3_1.5.0-0.1build1_armhf.deb ... 185s Unpacking libwebpmux3:armhf (1.5.0-0.1build1) ... 185s Selecting previously unselected package libxslt1.1:armhf. 185s Preparing to unpack .../50-libxslt1.1_1.1.43-0.3_armhf.deb ... 185s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 185s Selecting previously unselected package libzopfli1. 185s Preparing to unpack .../51-libzopfli1_1.0.3-3_armhf.deb ... 185s Unpacking libzopfli1 (1.0.3-3) ... 185s Selecting previously unselected package python3-sklearn-lib:armhf. 185s Preparing to unpack .../52-python3-sklearn-lib_1.7.2+dfsg-4_armhf.deb ... 185s Unpacking python3-sklearn-lib:armhf (1.7.2+dfsg-4) ... 186s Selecting previously unselected package python3-joblib. 186s Preparing to unpack .../53-python3-joblib_1.5.2-1_all.deb ... 186s Unpacking python3-joblib (1.5.2-1) ... 186s Selecting previously unselected package python3-decorator. 186s Preparing to unpack .../54-python3-decorator_5.2.1-2_all.deb ... 186s Unpacking python3-decorator (5.2.1-2) ... 186s Selecting previously unselected package python3-scipy. 186s Preparing to unpack .../55-python3-scipy_1.16.3-3_armhf.deb ... 186s Unpacking python3-scipy (1.16.3-3) ... 186s Selecting previously unselected package python3-threadpoolctl. 186s Preparing to unpack .../56-python3-threadpoolctl_3.1.0-1build1_all.deb ... 186s Unpacking python3-threadpoolctl (3.1.0-1build1) ... 186s Selecting previously unselected package python3-sklearn. 186s Preparing to unpack .../57-python3-sklearn_1.7.2+dfsg-4_all.deb ... 186s Unpacking python3-sklearn (1.7.2+dfsg-4) ... 187s Selecting previously unselected package python3-h5py-serial. 187s Preparing to unpack .../58-python3-h5py-serial_3.15.1-4_armhf.deb ... 187s Unpacking python3-h5py-serial (3.15.1-4) ... 187s Selecting previously unselected package python3-h5py. 187s Preparing to unpack .../59-python3-h5py_3.15.1-4_all.deb ... 187s Unpacking python3-h5py (3.15.1-4) ... 187s Selecting previously unselected package python3-charset-normalizer. 187s Preparing to unpack .../60-python3-charset-normalizer_3.4.4-2_armhf.deb ... 187s Unpacking python3-charset-normalizer (3.4.4-2) ... 187s Selecting previously unselected package python3.13-tk. 187s Preparing to unpack .../61-python3.13-tk_3.13.11-1_armhf.deb ... 187s Unpacking python3.13-tk (3.13.11-1) ... 187s Selecting previously unselected package python3.14-tk. 187s Preparing to unpack .../62-python3.14-tk_3.14.2-1_armhf.deb ... 187s Unpacking python3.14-tk (3.14.2-1) ... 187s Selecting previously unselected package python3-tk. 187s Preparing to unpack .../63-python3-tk_3.14.2-1_armhf.deb ... 187s Unpacking python3-tk (3.14.2-1) ... 187s Selecting previously unselected package python3-pil.imagetk:armhf. 187s Preparing to unpack .../64-python3-pil.imagetk_12.0.0-1ubuntu1_armhf.deb ... 187s Unpacking python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 187s Selecting previously unselected package libopenjp2-7:armhf. 187s Preparing to unpack .../65-libopenjp2-7_2.5.4-1_armhf.deb ... 187s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 187s Selecting previously unselected package python3-pil:armhf. 187s Preparing to unpack .../66-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 187s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 187s Selecting previously unselected package python3-cairo. 187s Preparing to unpack .../67-python3-cairo_1.27.0-2build1_armhf.deb ... 187s Unpacking python3-cairo (1.27.0-2build1) ... 187s Selecting previously unselected package python3-freetype. 187s Preparing to unpack .../68-python3-freetype_2.5.1-2_all.deb ... 187s Unpacking python3-freetype (2.5.1-2) ... 187s Selecting previously unselected package python3-rlpycairo. 187s Preparing to unpack .../69-python3-rlpycairo_0.3.0-4_all.deb ... 187s Unpacking python3-rlpycairo (0.3.0-4) ... 187s Selecting previously unselected package python3-reportlab. 187s Preparing to unpack .../70-python3-reportlab_4.4.9-1_all.deb ... 187s Unpacking python3-reportlab (4.4.9-1) ... 187s Selecting previously unselected package sgml-base. 187s Preparing to unpack .../71-sgml-base_1.31+nmu1_all.deb ... 187s Unpacking sgml-base (1.31+nmu1) ... 187s Selecting previously unselected package xml-core. 187s Preparing to unpack .../72-xml-core_0.19build1_all.deb ... 187s Unpacking xml-core (0.19build1) ... 187s Selecting previously unselected package w3c-sgml-lib. 187s Preparing to unpack .../73-w3c-sgml-lib_1.3-3build1_all.deb ... 187s Unpacking w3c-sgml-lib (1.3-3build1) ... 187s Selecting previously unselected package python3-biopython. 187s Preparing to unpack .../74-python3-biopython_1.86+dfsg-1_armhf.deb ... 187s Unpacking python3-biopython (1.86+dfsg-1) ... 188s Selecting previously unselected package python-matplotlib-data. 188s Preparing to unpack .../75-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 188s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 188s Selecting previously unselected package python3-contourpy. 188s Preparing to unpack .../76-python3-contourpy_1.3.3-1_armhf.deb ... 188s Unpacking python3-contourpy (1.3.3-1) ... 188s Selecting previously unselected package python3-cycler. 188s Preparing to unpack .../77-python3-cycler_0.12.1-2_all.deb ... 188s Unpacking python3-cycler (0.12.1-2) ... 188s Selecting previously unselected package python3-brotli. 188s Preparing to unpack .../78-python3-brotli_1.1.0-2build6_armhf.deb ... 188s Unpacking python3-brotli (1.1.0-2build6) ... 188s Selecting previously unselected package python3-lxml:armhf. 188s Preparing to unpack .../79-python3-lxml_6.0.2-1_armhf.deb ... 188s Unpacking python3-lxml:armhf (6.0.2-1) ... 188s Selecting previously unselected package python3-lz4. 188s Preparing to unpack .../80-python3-lz4_4.4.5+dfsg-1_armhf.deb ... 188s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 188s Selecting previously unselected package python3-mpmath. 188s Preparing to unpack .../81-python3-mpmath_1.3.0-2_all.deb ... 188s Unpacking python3-mpmath (1.3.0-2) ... 188s Selecting previously unselected package python3-sympy. 188s Preparing to unpack .../82-python3-sympy_1.14.0-2_all.deb ... 188s Unpacking python3-sympy (1.14.0-2) ... 188s Selecting previously unselected package python3-ufolib2. 188s Preparing to unpack .../83-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 188s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 188s Selecting previously unselected package python3-unicodedata2. 189s Preparing to unpack .../84-python3-unicodedata2_16.0.0+ds-1build1_armhf.deb ... 189s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 189s Selecting previously unselected package python3-zopfli. 189s Preparing to unpack .../85-python3-zopfli_0.4.0-1_armhf.deb ... 189s Unpacking python3-zopfli (0.4.0-1) ... 189s Selecting previously unselected package unicode-data. 189s Preparing to unpack .../86-unicode-data_16.0.0-1build1_all.deb ... 189s Unpacking unicode-data (16.0.0-1build1) ... 189s Selecting previously unselected package python3-fonttools. 189s Preparing to unpack .../87-python3-fonttools_4.61.1-3_armhf.deb ... 189s Unpacking python3-fonttools (4.61.1-3) ... 189s Selecting previously unselected package python3-kiwisolver. 189s Preparing to unpack .../88-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 189s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 189s Selecting previously unselected package python3-matplotlib. 189s Preparing to unpack .../89-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 189s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 190s Selecting previously unselected package python3-pytz. 190s Preparing to unpack .../90-python3-pytz_2025.2-5_all.deb ... 190s Unpacking python3-pytz (2025.2-5) ... 190s Selecting previously unselected package python3-pandas-lib:armhf. 190s Preparing to unpack .../91-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 190s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 190s Selecting previously unselected package python3-pandas. 190s Preparing to unpack .../92-python3-pandas_2.3.3+dfsg-3_all.deb ... 190s Unpacking python3-pandas (2.3.3+dfsg-3) ... 190s Selecting previously unselected package python3-seaborn. 190s Preparing to unpack .../93-python3-seaborn_0.13.2-6_all.deb ... 190s Unpacking python3-seaborn (0.13.2-6) ... 190s Selecting previously unselected package python3-pysam. 190s Preparing to unpack .../94-python3-pysam_0.23.3+ds-2_armhf.deb ... 190s Unpacking python3-pysam (0.23.3+ds-2) ... 191s Selecting previously unselected package mcaller. 191s Preparing to unpack .../95-mcaller_1.0.3+git20210624.b415090-3build1_all.deb ... 191s Unpacking mcaller (1.0.3+git20210624.b415090-3build1) ... 191s Setting up libhtscodecs2:armhf (1.6.1-2) ... 191s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 191s Setting up liblcms2-2:armhf (2.17-1) ... 191s Setting up libpixman-1-0:armhf (0.46.4-1) ... 191s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 191s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 191s Setting up libxrender1:armhf (1:0.9.12-1) ... 191s Setting up python3-joblib (1.5.2-1) ... 191s Setting up python3-lz4 (4.4.5+dfsg-1) ... 191s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 191s Setting up python3-charset-normalizer (3.4.4-2) ... 192s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 192s Setting up fonts-lyx (2.5.0~RC2-3) ... 192s Setting up python3-threadpoolctl (3.1.0-1build1) ... 192s Setting up x11-common (1:7.7+24ubuntu1) ... 192s Setting up libdeflate0:armhf (1.23-2) ... 192s Setting up libqhull-r8.0:armhf (2020.2-8) ... 192s Setting up python3-pytz (2025.2-5) ... 192s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 192s Setting up libgomp1:armhf (15.2.0-11ubuntu1) ... 192s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 192s Setting up libaec0:armhf (1.1.4-2) ... 192s Setting up unicode-data (16.0.0-1build1) ... 192s Setting up python3-decorator (5.2.1-2) ... 192s Setting up libfontenc1:armhf (1:1.1.8-1build2) ... 192s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 192s Setting up libzopfli1 (1.0.3-3) ... 192s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 192s Setting up python3-brotli (1.1.0-2build6) ... 193s Setting up liblzf1:armhf (3.6-4build1) ... 193s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 193s Setting up python3-cycler (0.12.1-2) ... 193s Setting up libimagequant0:armhf (2.18.0-1build1) ... 193s Setting up fonts-dejavu-mono (2.37-8build1) ... 193s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 193s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 193s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 193s Setting up fonts-dejavu-core (2.37-8build1) ... 193s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 193s Setting up libgfortran5:armhf (15.2.0-11ubuntu1) ... 193s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 193s Setting up fonts-dejavu-extra (2.37-8build1) ... 193s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 193s Setting up libhts3t64:armhf (1.22.1+ds2-1) ... 193s Setting up libopenjp2-7:armhf (2.5.4-1) ... 193s Setting up libharfbuzz0b:armhf (12.3.0-4) ... 193s Setting up sgml-base (1.31+nmu1) ... 193s Setting up libxss1:armhf (1:1.2.3-1build4) ... 193s Setting up python3-mpmath (1.3.0-2) ... 194s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 194s Setting up libwebpmux3:armhf (1.5.0-0.1build1) ... 194s Setting up libsz2:armhf (1.1.4-2) ... 194s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 194s Setting up python3-sympy (1.14.0-2) ... 201s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 201s return p.returncode 202s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 202s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 202s Setting up python3-pysam (0.23.3+ds-2) ... 202s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 202s Setting up libwebpdemux2:armhf (1.5.0-0.1build1) ... 202s Setting up python3-freetype (2.5.1-2) ... 202s Setting up xfonts-utils (1:7.7+7build1) ... 202s Setting up python3-zopfli (0.4.0-1) ... 202s Setting up libraqm0:armhf (0.10.3-1) ... 202s Setting up python3-numpy (1:2.3.5+ds-3) ... 205s Setting up libhdf5-310:armhf (1.14.5+repack-4) ... 205s Setting up python3-lxml:armhf (6.0.2-1) ... 205s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 205s Setting up xml-core (0.19build1) ... 205s Setting up python3-contourpy (1.3.3-1) ... 206s Setting up libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 206s Setting up libhdf5-hl-310:armhf (1.14.5+repack-4) ... 206s Setting up libxft2:armhf (2.3.6-1build2) ... 206s Setting up python3-scipy (1.16.3-3) ... 210s Setting up libtk8.6:armhf (8.6.17-1) ... 210s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 210s Setting up python3-sklearn-lib:armhf (1.7.2+dfsg-4) ... 210s Setting up python3-h5py-serial (3.15.1-4) ... 211s Setting up fonts-urw-base35 (20200910-8build1) ... 211s Setting up libcairo2:armhf (1.18.4-3) ... 211s Setting up python3.13-tk (3.13.11-1) ... 211s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 212s Setting up python3-pandas (2.3.3+dfsg-3) ... 218s Setting up python3-h5py (3.15.1-4) ... 218s Setting up python3-sklearn (1.7.2+dfsg-4) ... 220s Setting up python3.14-tk (3.14.2-1) ... 221s Setting up python3-cairo (1.27.0-2build1) ... 221s Setting up python3-tk (3.14.2-1) ... 221s Setting up python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 221s Setting up python3-rlpycairo (0.3.0-4) ... 221s Setting up python3-reportlab (4.4.9-1) ... 222s Setting up python3-fonttools (4.61.1-3) ... 223s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 224s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 226s Setting up python3-seaborn (0.13.2-6) ... 226s Processing triggers for man-db (2.13.1-1) ... 227s Processing triggers for libc-bin (2.42-2ubuntu4) ... 228s Processing triggers for sgml-base (1.31+nmu1) ... 228s Setting up w3c-sgml-lib (1.3-3build1) ... 258s Setting up python3-biopython (1.86+dfsg-1) ... 260s Setting up mcaller (1.0.3+git20210624.b415090-3build1) ... 268s autopkgtest [18:53:01]: test run-unit-test: [----------------------- 272s testdata/ 272s 1 contigs 272s 1 threads 272s thread finished processing...: 272s 35 observations 272s 35 positions 272s 0 regions with multiple methylated bases 272s 0 observations with skips included 272s 8 observations with too many skips 272s Finished extracting signals 276s testdata/ 276s 1 contigs 276s 1 threads 276s thread finished processing...: 276s 9 observations 276s 9 positions 276s 0 regions with multiple methylated bases 276s 0 observations with skips included 276s 2 observations with too many skips 276s Finished extracting signals 278s testdata/ 278s 1 contigs 278s 4 threads 282s Traceback (most recent call last): 282s File "/usr/bin/mCaller", line 187, in 282s main() 282s ~~~~^^ 282s File "/usr/bin/mCaller", line 183, in main 282s distribute_threads(args.positions,args.motif,args.tsv,read2qual,args.reference,num_refs,base,mod,args.threads,args.num_variables, 282s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 282s args.train,modelfile,args.skip_thresh,args.qual_thresh,args.classifier,training_tsv,args.plot_training) 282s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 282s File "/usr/bin/mCaller", line 70, in distribute_threads 282s p.start() 282s ~~~~~~~^^ 282s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 282s self._popen = self._Popen(self) 282s ~~~~~~~~~~~^^^^^^ 282s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 282s return _default_context.get_context().Process._Popen(process_obj) 282s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 282s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 282s return Popen(process_obj) 282s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 282s super().__init__(process_obj) 282s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 282s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 282s self._launch(process_obj) 282s ~~~~~~~~~~~~^^^^^^^^^^^^^ 282s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 47, in _launch 282s reduction.dump(process_obj, buf) 282s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ 282s File "/usr/lib/python3.14/multiprocessing/reduction.py", line 60, in dump 282s ForkingPickler(file, protocol).dump(obj) 282s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ 282s _pickle.PicklingError: Can't pickle local object .worker at 0xe100f708> 282s when serializing dict item '_target' 282s when serializing multiprocessing.context.Process state 282s when serializing multiprocessing.context.Process object 283s autopkgtest [18:53:16]: test run-unit-test: -----------------------] 287s autopkgtest [18:53:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 287s run-unit-test FAIL non-zero exit status 1 291s autopkgtest [18:53:24]: @@@@@@@@@@@@@@@@@@@@ summary 291s run-unit-test FAIL non-zero exit status 1