0s autopkgtest [14:22:46]: starting date and time: 2025-12-04 14:22:46+0000 0s autopkgtest [14:22:46]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [14:22:46]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a6i83h6s/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade mapdamage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- lxd -r lxd-armhf-10.145.243.221 lxd-armhf-10.145.243.221:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [14:23:08]: testbed dpkg architecture: armhf 24s autopkgtest [14:23:10]: testbed apt version: 3.1.12 29s autopkgtest [14:23:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 31s autopkgtest [14:23:17]: testbed release detected to be: None 38s autopkgtest [14:23:24]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 41s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 41s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 41s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 42s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.1 kB] 42s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [158 kB] 42s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [952 kB] 42s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [219 kB] 42s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [723 kB] 42s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [6500 B] 42s Get:11 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [305 kB] 42s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1414 kB] 44s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1366 kB] 44s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB] 45s Get:16 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 48s Fetched 42.2 MB in 8s (5598 kB/s) 49s Reading package lists... 55s autopkgtest [14:23:41]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s Calculating upgrade... 58s The following packages will be upgraded: 58s libpython3-stdlib python3 python3-gdbm python3-minimal 59s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 72.9 kB of archives. 59s After this operation, 2048 B of additional disk space will be used. 59s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.13.9-2 [28.1 kB] 59s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.13.9-2 [23.0 kB] 59s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.13.9-2 [10.8 kB] 59s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.13.9-2 [11.0 kB] 59s Fetched 72.9 kB in 1s (116 kB/s) 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 60s Preparing to unpack .../python3-minimal_3.13.9-2_armhf.deb ... 60s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 60s Setting up python3-minimal (3.13.9-2) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 60s Preparing to unpack .../python3_3.13.9-2_armhf.deb ... 60s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 60s Preparing to unpack .../libpython3-stdlib_3.13.9-2_armhf.deb ... 60s Unpacking libpython3-stdlib:armhf (3.13.9-2) over (3.13.7-1) ... 60s Preparing to unpack .../python3-gdbm_3.13.9-2_armhf.deb ... 60s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 60s Setting up python3-gdbm (3.13.9-2) ... 60s Setting up libpython3-stdlib:armhf (3.13.9-2) ... 60s Setting up python3 (3.13.9-2) ... 60s Processing triggers for man-db (2.13.1-1) ... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Solving dependencies... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s autopkgtest [14:23:52]: rebooting testbed after setup commands that affected boot 111s autopkgtest [14:24:37]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 137s autopkgtest [14:25:03]: @@@@@@@@@@@@@@@@@@@@ apt-source mapdamage 148s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (dsc) [2396 B] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (tar) [36.2 kB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (diff) [7824 B] 148s gpgv: Signature made Sun Aug 25 16:49:00 2024 UTC 148s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 148s gpgv: issuer "emollier@debian.org" 148s gpgv: Can't check signature: No public key 148s dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.2+dfsg-1.dsc: no acceptable signature found 149s autopkgtest [14:25:15]: testing package mapdamage version 2.2.2+dfsg-1 151s autopkgtest [14:25:17]: build not needed 153s autopkgtest [14:25:19]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 156s The following NEW packages will be installed: 156s cpp cpp-15 cpp-15-arm-linux-gnueabihf cpp-arm-linux-gnueabihf fontconfig 156s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-15 156s gcc-15-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gfortran gfortran-15 156s gfortran-15-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf libasan8 156s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 156s libdeflate0 libfontconfig1 libfreetype6 libgcc-15-dev libgfortran-15-dev 156s libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl28 libgslcblas0 156s libharfbuzz0b libhts3t64 libhtscodecs2 libice6 libisl23 libjbig0 156s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libmpc3 libopenblas-dev 156s libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpango-1.0-0 156s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 156s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 156s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 156s libxt6t64 linux-libc-dev mapdamage python3-pysam r-base-core r-cran-cli 156s r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver r-cran-foreach 156s r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-inline 156s r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 156s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 156s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 156s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 156s r-cran-rlang r-cran-runit r-cran-scales r-cran-tibble r-cran-utf8 156s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto seqtk unzip 156s x11-common xdg-utils zip 156s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 134 MB of archives. 156s After this operation, 330 MB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1 [546 kB] 157s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 157s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-9ubuntu1 [10.1 MB] 163s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-9ubuntu1 [1032 B] 163s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 163s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 163s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 164s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 164s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 164s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 164s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 164s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.3ubuntu1 [190 kB] 164s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-9ubuntu1 [43.5 kB] 164s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-9ubuntu1 [129 kB] 164s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-9ubuntu1 [2951 kB] 165s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-9ubuntu1 [1187 kB] 165s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-9ubuntu1 [897 kB] 165s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-9ubuntu1 [19.5 MB] 168s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-9ubuntu1 [496 kB] 168s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 168s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 168s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-9ubuntu1 [334 kB] 168s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran-15-dev armhf 15.2.0-9ubuntu1 [380 kB] 168s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-2ubuntu2 [21.8 kB] 168s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.17.0-6.6 [1772 kB] 168s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 168s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1 [62.3 kB] 168s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-2ubuntu2 [1416 kB] 169s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15-arm-linux-gnueabihf armhf 15.2.0-9ubuntu1 [10.7 MB] 170s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15 armhf 15.2.0-9ubuntu1 [17.9 kB] 170s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1020 B] 170s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran armhf 4:15.2.0-4ubuntu1 [1162 B] 170s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 170s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 170s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 170s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 170s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 170s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 170s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 170s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 170s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 170s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf libgslcblas0 armhf 2.8+dfsg-5.1ubuntu1 [85.4 kB] 170s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf libgsl28 armhf 2.8+dfsg-5.1ubuntu1 [890 kB] 170s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf libgsl-dev armhf 2.8+dfsg-5.1ubuntu1 [1153 kB] 170s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 170s Get:46 http://ftpmaster.internal/ubuntu resolute/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 170s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf libhts3t64 armhf 1.22.1+ds2-1 [408 kB] 170s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 170s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 170s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 170s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 170s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas0-pthread armhf 0.3.30+ds-3 [2882 kB] 171s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 171s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 171s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas0 armhf 0.3.30+ds-3 [6306 B] 171s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas-pthread-dev armhf 0.3.30+ds-3 [2583 kB] 171s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas-dev armhf 0.3.30+ds-3 [21.3 kB] 171s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.29-2build2 [153 kB] 171s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.29-2build2 [15.4 kB] 171s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.3-2 [217 kB] 171s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.3-2 [44.0 kB] 171s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.3-2 [25.3 kB] 171s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 171s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 171s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 171s Get:66 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 171s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 172s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 172s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 172s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 172s Get:71 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 172s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 172s Get:73 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 172s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 172s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 172s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-28ubuntu7 [168 kB] 172s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 172s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1 [28.5 MB] 175s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1 [90.5 kB] 175s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-iterators all 1.0.14-1build1 [336 kB] 175s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-foreach all 1.5.2-1build1 [124 kB] 175s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gam armhf 1.22-5-1 [382 kB] 175s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 175s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 175s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 175s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 175s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 175s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 175s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 175s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 176s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nlme armhf 3.1.168-1 [2304 kB] 176s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 177s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mgcv armhf 1.9-3-1 [3289 kB] 179s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 179s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 179s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-colorspace armhf 2.1-1+dfsg-1 [1561 kB] 179s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-munsell all 0.5.1-1 [213 kB] 179s Get:98 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 179s Get:99 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 179s Get:100 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 179s Get:101 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.3.0-1 [603 kB] 180s Get:102 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 180s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 180s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 180s Get:105 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 180s Get:106 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 181s Get:107 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 181s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 181s Get:109 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 181s Get:110 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 181s Get:111 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-inline all 0.3.21-1 [131 kB] 181s Get:112 http://ftpmaster.internal/ubuntu resolute/universe armhf seqtk armhf 1.4-2 [35.3 kB] 181s Get:113 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pysam armhf 0.23.3+ds-2 [4358 kB] 182s Get:114 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.21-2 [79.7 kB] 182s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 182s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 183s Get:117 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcppgsl armhf 0.3.13-1build1 [198 kB] 183s Get:118 http://ftpmaster.internal/ubuntu resolute/universe armhf mapdamage all 2.2.2+dfsg-1 [43.3 kB] 183s Get:119 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-runit all 0.4.33.1-1 [250 kB] 183s Preconfiguring packages ... 183s Fetched 134 MB in 27s (4988 kB/s) 184s Selecting previously unselected package libisl23:armhf. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 184s Preparing to unpack .../000-libisl23_0.27-1_armhf.deb ... 184s Unpacking libisl23:armhf (0.27-1) ... 184s Selecting previously unselected package libmpc3:armhf. 184s Preparing to unpack .../001-libmpc3_1.3.1-2_armhf.deb ... 184s Unpacking libmpc3:armhf (1.3.1-2) ... 184s Selecting previously unselected package cpp-15-arm-linux-gnueabihf. 184s Preparing to unpack .../002-cpp-15-arm-linux-gnueabihf_15.2.0-9ubuntu1_armhf.deb ... 184s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 184s Selecting previously unselected package cpp-15. 184s Preparing to unpack .../003-cpp-15_15.2.0-9ubuntu1_armhf.deb ... 184s Unpacking cpp-15 (15.2.0-9ubuntu1) ... 184s Selecting previously unselected package cpp-arm-linux-gnueabihf. 184s Preparing to unpack .../004-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 184s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 184s Selecting previously unselected package cpp. 184s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ... 184s Unpacking cpp (4:15.2.0-4ubuntu1) ... 184s Selecting previously unselected package libfreetype6:armhf. 184s Preparing to unpack .../006-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 184s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 184s Selecting previously unselected package fonts-dejavu-mono. 184s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ... 184s Unpacking fonts-dejavu-mono (2.37-8) ... 184s Selecting previously unselected package fonts-dejavu-core. 184s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ... 184s Unpacking fonts-dejavu-core (2.37-8) ... 184s Selecting previously unselected package fontconfig-config. 184s Preparing to unpack .../009-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 185s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 185s Selecting previously unselected package libfontconfig1:armhf. 185s Preparing to unpack .../010-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 185s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 185s Selecting previously unselected package fontconfig. 185s Preparing to unpack .../011-fontconfig_2.15.0-2.3ubuntu1_armhf.deb ... 185s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 185s Selecting previously unselected package libcc1-0:armhf. 185s Preparing to unpack .../012-libcc1-0_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking libcc1-0:armhf (15.2.0-9ubuntu1) ... 185s Selecting previously unselected package libgomp1:armhf. 185s Preparing to unpack .../013-libgomp1_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking libgomp1:armhf (15.2.0-9ubuntu1) ... 185s Selecting previously unselected package libasan8:armhf. 185s Preparing to unpack .../014-libasan8_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking libasan8:armhf (15.2.0-9ubuntu1) ... 185s Selecting previously unselected package libubsan1:armhf. 185s Preparing to unpack .../015-libubsan1_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking libubsan1:armhf (15.2.0-9ubuntu1) ... 185s Selecting previously unselected package libgcc-15-dev:armhf. 185s Preparing to unpack .../016-libgcc-15-dev_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking libgcc-15-dev:armhf (15.2.0-9ubuntu1) ... 185s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 185s Preparing to unpack .../017-gcc-15-arm-linux-gnueabihf_15.2.0-9ubuntu1_armhf.deb ... 185s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 186s Selecting previously unselected package gcc-15. 186s Preparing to unpack .../018-gcc-15_15.2.0-9ubuntu1_armhf.deb ... 186s Unpacking gcc-15 (15.2.0-9ubuntu1) ... 186s Selecting previously unselected package gcc-arm-linux-gnueabihf. 186s Preparing to unpack .../019-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 186s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 186s Selecting previously unselected package gcc. 186s Preparing to unpack .../020-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ... 186s Unpacking gcc (4:15.2.0-4ubuntu1) ... 186s Selecting previously unselected package libgfortran5:armhf. 186s Preparing to unpack .../021-libgfortran5_15.2.0-9ubuntu1_armhf.deb ... 186s Unpacking libgfortran5:armhf (15.2.0-9ubuntu1) ... 186s Selecting previously unselected package libgfortran-15-dev:armhf. 186s Preparing to unpack .../022-libgfortran-15-dev_15.2.0-9ubuntu1_armhf.deb ... 186s Unpacking libgfortran-15-dev:armhf (15.2.0-9ubuntu1) ... 186s Selecting previously unselected package libc-dev-bin. 186s Preparing to unpack .../023-libc-dev-bin_2.42-2ubuntu2_armhf.deb ... 186s Unpacking libc-dev-bin (2.42-2ubuntu2) ... 186s Selecting previously unselected package linux-libc-dev:armhf. 186s Preparing to unpack .../024-linux-libc-dev_6.17.0-6.6_armhf.deb ... 186s Unpacking linux-libc-dev:armhf (6.17.0-6.6) ... 186s Selecting previously unselected package libcrypt-dev:armhf. 186s Preparing to unpack .../025-libcrypt-dev_1%3a4.5.1-1_armhf.deb ... 186s Unpacking libcrypt-dev:armhf (1:4.5.1-1) ... 186s Selecting previously unselected package rpcsvc-proto. 186s Preparing to unpack .../026-rpcsvc-proto_1.4.3-1_armhf.deb ... 186s Unpacking rpcsvc-proto (1.4.3-1) ... 186s Selecting previously unselected package libc6-dev:armhf. 186s Preparing to unpack .../027-libc6-dev_2.42-2ubuntu2_armhf.deb ... 186s Unpacking libc6-dev:armhf (2.42-2ubuntu2) ... 187s Selecting previously unselected package gfortran-15-arm-linux-gnueabihf. 187s Preparing to unpack .../028-gfortran-15-arm-linux-gnueabihf_15.2.0-9ubuntu1_armhf.deb ... 187s Unpacking gfortran-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 187s Selecting previously unselected package gfortran-15. 187s Preparing to unpack .../029-gfortran-15_15.2.0-9ubuntu1_armhf.deb ... 187s Unpacking gfortran-15 (15.2.0-9ubuntu1) ... 187s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 187s Preparing to unpack .../030-gfortran-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 187s Unpacking gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 187s Selecting previously unselected package gfortran. 187s Preparing to unpack .../031-gfortran_4%3a15.2.0-4ubuntu1_armhf.deb ... 187s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 187s Selecting previously unselected package libblas3:armhf. 187s Preparing to unpack .../032-libblas3_3.12.1-7_armhf.deb ... 187s Unpacking libblas3:armhf (3.12.1-7) ... 187s Selecting previously unselected package libpixman-1-0:armhf. 187s Preparing to unpack .../033-libpixman-1-0_0.46.4-1_armhf.deb ... 187s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 187s Selecting previously unselected package libxcb-render0:armhf. 187s Preparing to unpack .../034-libxcb-render0_1.17.0-2build1_armhf.deb ... 187s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 187s Selecting previously unselected package libxcb-shm0:armhf. 187s Preparing to unpack .../035-libxcb-shm0_1.17.0-2build1_armhf.deb ... 187s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 187s Selecting previously unselected package libxrender1:armhf. 187s Preparing to unpack .../036-libxrender1_1%3a0.9.12-1_armhf.deb ... 187s Unpacking libxrender1:armhf (1:0.9.12-1) ... 187s Selecting previously unselected package libcairo2:armhf. 187s Preparing to unpack .../037-libcairo2_1.18.4-1build1_armhf.deb ... 187s Unpacking libcairo2:armhf (1.18.4-1build1) ... 187s Selecting previously unselected package libdatrie1:armhf. 187s Preparing to unpack .../038-libdatrie1_0.2.14-1_armhf.deb ... 187s Unpacking libdatrie1:armhf (0.2.14-1) ... 187s Selecting previously unselected package libdeflate0:armhf. 187s Preparing to unpack .../039-libdeflate0_1.23-2_armhf.deb ... 187s Unpacking libdeflate0:armhf (1.23-2) ... 187s Selecting previously unselected package libgraphite2-3:armhf. 187s Preparing to unpack .../040-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 187s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 187s Selecting previously unselected package libgslcblas0:armhf. 187s Preparing to unpack .../041-libgslcblas0_2.8+dfsg-5.1ubuntu1_armhf.deb ... 187s Unpacking libgslcblas0:armhf (2.8+dfsg-5.1ubuntu1) ... 187s Selecting previously unselected package libgsl28:armhf. 187s Preparing to unpack .../042-libgsl28_2.8+dfsg-5.1ubuntu1_armhf.deb ... 187s Unpacking libgsl28:armhf (2.8+dfsg-5.1ubuntu1) ... 187s Selecting previously unselected package libgsl-dev. 187s Preparing to unpack .../043-libgsl-dev_2.8+dfsg-5.1ubuntu1_armhf.deb ... 187s Unpacking libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 187s Selecting previously unselected package libharfbuzz0b:armhf. 187s Preparing to unpack .../044-libharfbuzz0b_12.1.0-1_armhf.deb ... 187s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 187s Selecting previously unselected package libhtscodecs2:armhf. 187s Preparing to unpack .../045-libhtscodecs2_1.6.1-2_armhf.deb ... 187s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 188s Selecting previously unselected package libhts3t64:armhf. 188s Preparing to unpack .../046-libhts3t64_1.22.1+ds2-1_armhf.deb ... 188s Unpacking libhts3t64:armhf (1.22.1+ds2-1) ... 188s Selecting previously unselected package x11-common. 188s Preparing to unpack .../047-x11-common_1%3a7.7+24ubuntu1_all.deb ... 188s Unpacking x11-common (1:7.7+24ubuntu1) ... 188s Selecting previously unselected package libice6:armhf. 188s Preparing to unpack .../048-libice6_2%3a1.1.1-1_armhf.deb ... 188s Unpacking libice6:armhf (2:1.1.1-1) ... 188s Selecting previously unselected package libjpeg-turbo8:armhf. 188s Preparing to unpack .../049-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 188s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 188s Selecting previously unselected package libjpeg8:armhf. 188s Preparing to unpack .../050-libjpeg8_8c-2ubuntu11_armhf.deb ... 188s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 188s Selecting previously unselected package libopenblas0-pthread:armhf. 188s Preparing to unpack .../051-libopenblas0-pthread_0.3.30+ds-3_armhf.deb ... 188s Unpacking libopenblas0-pthread:armhf (0.3.30+ds-3) ... 188s Selecting previously unselected package liblapack3:armhf. 188s Preparing to unpack .../052-liblapack3_3.12.1-7_armhf.deb ... 188s Unpacking liblapack3:armhf (3.12.1-7) ... 188s Selecting previously unselected package liblerc4:armhf. 188s Preparing to unpack .../053-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 188s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 188s Selecting previously unselected package libopenblas0:armhf. 188s Preparing to unpack .../054-libopenblas0_0.3.30+ds-3_armhf.deb ... 188s Unpacking libopenblas0:armhf (0.3.30+ds-3) ... 188s Selecting previously unselected package libopenblas-pthread-dev:armhf. 188s Preparing to unpack .../055-libopenblas-pthread-dev_0.3.30+ds-3_armhf.deb ... 188s Unpacking libopenblas-pthread-dev:armhf (0.3.30+ds-3) ... 188s Selecting previously unselected package libopenblas-dev:armhf. 188s Preparing to unpack .../056-libopenblas-dev_0.3.30+ds-3_armhf.deb ... 188s Unpacking libopenblas-dev:armhf (0.3.30+ds-3) ... 188s Selecting previously unselected package libthai-data. 188s Preparing to unpack .../057-libthai-data_0.1.29-2build2_all.deb ... 188s Unpacking libthai-data (0.1.29-2build2) ... 188s Selecting previously unselected package libthai0:armhf. 188s Preparing to unpack .../058-libthai0_0.1.29-2build2_armhf.deb ... 188s Unpacking libthai0:armhf (0.1.29-2build2) ... 188s Selecting previously unselected package libpango-1.0-0:armhf. 188s Preparing to unpack .../059-libpango-1.0-0_1.56.3-2_armhf.deb ... 188s Unpacking libpango-1.0-0:armhf (1.56.3-2) ... 188s Selecting previously unselected package libpangoft2-1.0-0:armhf. 188s Preparing to unpack .../060-libpangoft2-1.0-0_1.56.3-2_armhf.deb ... 188s Unpacking libpangoft2-1.0-0:armhf (1.56.3-2) ... 188s Selecting previously unselected package libpangocairo-1.0-0:armhf. 188s Preparing to unpack .../061-libpangocairo-1.0-0_1.56.3-2_armhf.deb ... 188s Unpacking libpangocairo-1.0-0:armhf (1.56.3-2) ... 188s Selecting previously unselected package libpaper2:armhf. 188s Preparing to unpack .../062-libpaper2_2.2.5-0.3_armhf.deb ... 188s Unpacking libpaper2:armhf (2.2.5-0.3) ... 188s Selecting previously unselected package libpaper-utils. 188s Preparing to unpack .../063-libpaper-utils_2.2.5-0.3_armhf.deb ... 188s Unpacking libpaper-utils (2.2.5-0.3) ... 188s Selecting previously unselected package libsharpyuv0:armhf. 188s Preparing to unpack .../064-libsharpyuv0_1.5.0-0.1_armhf.deb ... 188s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 188s Selecting previously unselected package libsm6:armhf. 188s Preparing to unpack .../065-libsm6_2%3a1.2.6-1_armhf.deb ... 188s Unpacking libsm6:armhf (2:1.2.6-1) ... 188s Selecting previously unselected package libtcl8.6:armhf. 188s Preparing to unpack .../066-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 188s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 188s Selecting previously unselected package libjbig0:armhf. 188s Preparing to unpack .../067-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 188s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 188s Selecting previously unselected package libwebp7:armhf. 189s Preparing to unpack .../068-libwebp7_1.5.0-0.1_armhf.deb ... 189s Unpacking libwebp7:armhf (1.5.0-0.1) ... 189s Selecting previously unselected package libtiff6:armhf. 189s Preparing to unpack .../069-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 189s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 189s Selecting previously unselected package libxft2:armhf. 189s Preparing to unpack .../070-libxft2_2.3.6-1build1_armhf.deb ... 189s Unpacking libxft2:armhf (2.3.6-1build1) ... 189s Selecting previously unselected package libxss1:armhf. 189s Preparing to unpack .../071-libxss1_1%3a1.2.3-1build3_armhf.deb ... 189s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 189s Selecting previously unselected package libtk8.6:armhf. 189s Preparing to unpack .../072-libtk8.6_8.6.17-1_armhf.deb ... 189s Unpacking libtk8.6:armhf (8.6.17-1) ... 189s Selecting previously unselected package libxt6t64:armhf. 189s Preparing to unpack .../073-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 189s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 189s Selecting previously unselected package zip. 189s Preparing to unpack .../074-zip_3.0-15ubuntu2_armhf.deb ... 189s Unpacking zip (3.0-15ubuntu2) ... 189s Selecting previously unselected package unzip. 189s Preparing to unpack .../075-unzip_6.0-28ubuntu7_armhf.deb ... 189s Unpacking unzip (6.0-28ubuntu7) ... 189s Selecting previously unselected package xdg-utils. 189s Preparing to unpack .../076-xdg-utils_1.2.1-2ubuntu1_all.deb ... 189s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 189s Selecting previously unselected package r-base-core. 189s Preparing to unpack .../077-r-base-core_4.5.2-1_armhf.deb ... 189s Unpacking r-base-core (4.5.2-1) ... 189s Selecting previously unselected package r-cran-codetools. 189s Preparing to unpack .../078-r-cran-codetools_0.2-20-1_all.deb ... 189s Unpacking r-cran-codetools (0.2-20-1) ... 189s Selecting previously unselected package r-cran-iterators. 189s Preparing to unpack .../079-r-cran-iterators_1.0.14-1build1_all.deb ... 189s Unpacking r-cran-iterators (1.0.14-1build1) ... 189s Selecting previously unselected package r-cran-foreach. 189s Preparing to unpack .../080-r-cran-foreach_1.5.2-1build1_all.deb ... 189s Unpacking r-cran-foreach (1.5.2-1build1) ... 189s Selecting previously unselected package r-cran-gam. 189s Preparing to unpack .../081-r-cran-gam_1.22-5-1_armhf.deb ... 189s Unpacking r-cran-gam (1.22-5-1) ... 189s Selecting previously unselected package r-cran-cli. 189s Preparing to unpack .../082-r-cran-cli_3.6.4-1_armhf.deb ... 189s Unpacking r-cran-cli (3.6.4-1) ... 189s Selecting previously unselected package r-cran-glue. 189s Preparing to unpack .../083-r-cran-glue_1.8.0-1_armhf.deb ... 189s Unpacking r-cran-glue (1.8.0-1) ... 189s Selecting previously unselected package r-cran-rlang. 190s Preparing to unpack .../084-r-cran-rlang_1.1.5-3_armhf.deb ... 190s Unpacking r-cran-rlang (1.1.5-3) ... 190s Selecting previously unselected package r-cran-lifecycle. 190s Preparing to unpack .../085-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 190s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 190s Selecting previously unselected package r-cran-gtable. 190s Preparing to unpack .../086-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 190s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 190s Selecting previously unselected package r-cran-isoband. 190s Preparing to unpack .../087-r-cran-isoband_0.2.7-1_armhf.deb ... 190s Unpacking r-cran-isoband (0.2.7-1) ... 190s Selecting previously unselected package r-cran-mass. 190s Preparing to unpack .../088-r-cran-mass_7.3-65-1_armhf.deb ... 190s Unpacking r-cran-mass (7.3-65-1) ... 190s Selecting previously unselected package r-cran-lattice. 190s Preparing to unpack .../089-r-cran-lattice_0.22-7-1_armhf.deb ... 190s Unpacking r-cran-lattice (0.22-7-1) ... 190s Selecting previously unselected package r-cran-nlme. 190s Preparing to unpack .../090-r-cran-nlme_3.1.168-1_armhf.deb ... 190s Unpacking r-cran-nlme (3.1.168-1) ... 190s Selecting previously unselected package r-cran-matrix. 190s Preparing to unpack .../091-r-cran-matrix_1.7-4-1_armhf.deb ... 190s Unpacking r-cran-matrix (1.7-4-1) ... 190s Selecting previously unselected package r-cran-mgcv. 190s Preparing to unpack .../092-r-cran-mgcv_1.9-3-1_armhf.deb ... 190s Unpacking r-cran-mgcv (1.9-3-1) ... 190s Selecting previously unselected package r-cran-farver. 190s Preparing to unpack .../093-r-cran-farver_2.1.2-1_armhf.deb ... 190s Unpacking r-cran-farver (2.1.2-1) ... 190s Selecting previously unselected package r-cran-labeling. 190s Preparing to unpack .../094-r-cran-labeling_0.4.3-1_all.deb ... 190s Unpacking r-cran-labeling (0.4.3-1) ... 190s Selecting previously unselected package r-cran-colorspace. 190s Preparing to unpack .../095-r-cran-colorspace_2.1-1+dfsg-1_armhf.deb ... 190s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 190s Selecting previously unselected package r-cran-munsell. 190s Preparing to unpack .../096-r-cran-munsell_0.5.1-1_all.deb ... 190s Unpacking r-cran-munsell (0.5.1-1) ... 190s Selecting previously unselected package r-cran-r6. 190s Preparing to unpack .../097-r-cran-r6_2.6.1-1_all.deb ... 190s Unpacking r-cran-r6 (2.6.1-1) ... 190s Selecting previously unselected package r-cran-rcolorbrewer. 190s Preparing to unpack .../098-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 190s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 190s Selecting previously unselected package r-cran-viridislite. 190s Preparing to unpack .../099-r-cran-viridislite_0.4.2-2_all.deb ... 190s Unpacking r-cran-viridislite (0.4.2-2) ... 190s Selecting previously unselected package r-cran-scales. 190s Preparing to unpack .../100-r-cran-scales_1.3.0-1_all.deb ... 190s Unpacking r-cran-scales (1.3.0-1) ... 190s Selecting previously unselected package r-cran-fansi. 190s Preparing to unpack .../101-r-cran-fansi_1.0.6-2_armhf.deb ... 190s Unpacking r-cran-fansi (1.0.6-2) ... 190s Selecting previously unselected package r-cran-magrittr. 190s Preparing to unpack .../102-r-cran-magrittr_2.0.3-1_armhf.deb ... 190s Unpacking r-cran-magrittr (2.0.3-1) ... 190s Selecting previously unselected package r-cran-utf8. 191s Preparing to unpack .../103-r-cran-utf8_1.2.4-1_armhf.deb ... 191s Unpacking r-cran-utf8 (1.2.4-1) ... 191s Selecting previously unselected package r-cran-vctrs. 191s Preparing to unpack .../104-r-cran-vctrs_0.6.5-1_armhf.deb ... 191s Unpacking r-cran-vctrs (0.6.5-1) ... 191s Selecting previously unselected package r-cran-pillar. 191s Preparing to unpack .../105-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 191s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-pkgconfig. 191s Preparing to unpack .../106-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 191s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 191s Selecting previously unselected package r-cran-tibble. 191s Preparing to unpack .../107-r-cran-tibble_3.2.1+dfsg-3_armhf.deb ... 191s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 191s Selecting previously unselected package r-cran-withr. 191s Preparing to unpack .../108-r-cran-withr_3.0.2+dfsg-1_all.deb ... 191s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 191s Selecting previously unselected package r-cran-ggplot2. 191s Preparing to unpack .../109-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 191s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-inline. 191s Preparing to unpack .../110-r-cran-inline_0.3.21-1_all.deb ... 191s Unpacking r-cran-inline (0.3.21-1) ... 191s Selecting previously unselected package seqtk. 191s Preparing to unpack .../111-seqtk_1.4-2_armhf.deb ... 191s Unpacking seqtk (1.4-2) ... 191s Selecting previously unselected package python3-pysam. 191s Preparing to unpack .../112-python3-pysam_0.23.3+ds-2_armhf.deb ... 191s Unpacking python3-pysam (0.23.3+ds-2) ... 191s Selecting previously unselected package r-cran-littler. 191s Preparing to unpack .../113-r-cran-littler_0.3.21-2_armhf.deb ... 191s Unpacking r-cran-littler (0.3.21-2) ... 191s Selecting previously unselected package r-cran-pkgkitten. 191s Preparing to unpack .../114-r-cran-pkgkitten_0.2.4-1_all.deb ... 191s Unpacking r-cran-pkgkitten (0.2.4-1) ... 191s Selecting previously unselected package r-cran-rcpp. 191s Preparing to unpack .../115-r-cran-rcpp_1.1.0-1_armhf.deb ... 191s Unpacking r-cran-rcpp (1.1.0-1) ... 191s Selecting previously unselected package r-cran-rcppgsl. 191s Preparing to unpack .../116-r-cran-rcppgsl_0.3.13-1build1_armhf.deb ... 191s Unpacking r-cran-rcppgsl (0.3.13-1build1) ... 191s Selecting previously unselected package mapdamage. 192s Preparing to unpack .../117-mapdamage_2.2.2+dfsg-1_all.deb ... 192s Unpacking mapdamage (2.2.2+dfsg-1) ... 192s Selecting previously unselected package r-cran-runit. 192s Preparing to unpack .../118-r-cran-runit_0.4.33.1-1_all.deb ... 192s Unpacking r-cran-runit (0.4.33.1-1) ... 192s Setting up libhtscodecs2:armhf (1.6.1-2) ... 192s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 192s Setting up libpixman-1-0:armhf (0.46.4-1) ... 192s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 192s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 192s Setting up seqtk (1.4-2) ... 192s Setting up libxrender1:armhf (1:0.9.12-1) ... 192s Setting up libdatrie1:armhf (0.2.14-1) ... 192s Setting up libgslcblas0:armhf (2.8+dfsg-5.1ubuntu1) ... 192s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 192s Setting up unzip (6.0-28ubuntu7) ... 192s Setting up x11-common (1:7.7+24ubuntu1) ... 192s Setting up libdeflate0:armhf (1.23-2) ... 192s Setting up linux-libc-dev:armhf (6.17.0-6.6) ... 192s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 192s Setting up libgomp1:armhf (15.2.0-9ubuntu1) ... 192s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 192s Setting up zip (3.0-15ubuntu2) ... 192s Setting up libblas3:armhf (3.12.1-7) ... 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 192s Setting up rpcsvc-proto (1.4.3-1) ... 192s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 192s Setting up fonts-dejavu-mono (2.37-8) ... 192s Setting up libmpc3:armhf (1.3.1-2) ... 192s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 192s Setting up fonts-dejavu-core (2.37-8) ... 192s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 192s Setting up libgfortran5:armhf (15.2.0-9ubuntu1) ... 192s Setting up libwebp7:armhf (1.5.0-0.1) ... 192s Setting up libubsan1:armhf (15.2.0-9ubuntu1) ... 192s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 192s Setting up libasan8:armhf (15.2.0-9ubuntu1) ... 192s Setting up libhts3t64:armhf (1.22.1+ds2-1) ... 192s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 192s Setting up libthai-data (0.1.29-2build2) ... 192s Setting up libxss1:armhf (1:1.2.3-1build3) ... 192s Setting up libpaper2:armhf (2.2.5-0.3) ... 192s Setting up libisl23:armhf (0.27-1) ... 192s Setting up libgsl28:armhf (2.8+dfsg-5.1ubuntu1) ... 192s Setting up libc-dev-bin (2.42-2ubuntu2) ... 192s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 192s Setting up xdg-utils (1.2.1-2ubuntu1) ... 192s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 192s Setting up libcc1-0:armhf (15.2.0-9ubuntu1) ... 192s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 192s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 192s Setting up libice6:armhf (2:1.1.1-1) ... 192s Setting up liblapack3:armhf (3.12.1-7) ... 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 192s Setting up libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 192s Setting up libopenblas0-pthread:armhf (0.3.30+ds-3) ... 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 192s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so.0 to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so.0 (libopenblas.so.0-arm-linux-gnueabihf) in auto mode 192s Setting up python3-pysam (0.23.3+ds-2) ... 193s Setting up libgcc-15-dev:armhf (15.2.0-9ubuntu1) ... 193s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 193s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 193s Setting up libpaper-utils (2.2.5-0.3) ... 193s Setting up libgfortran-15-dev:armhf (15.2.0-9ubuntu1) ... 193s Setting up libthai0:armhf (0.1.29-2build2) ... 193s Setting up libopenblas0:armhf (0.3.30+ds-3) ... 193s Setting up cpp-15 (15.2.0-9ubuntu1) ... 193s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 193s Setting up cpp (4:15.2.0-4ubuntu1) ... 193s Setting up libc6-dev:armhf (2.42-2ubuntu2) ... 193s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 193s Setting up libsm6:armhf (2:1.2.6-1) ... 193s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 193s Setting up libopenblas-pthread-dev:armhf (0.3.30+ds-3) ... 193s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 193s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 193s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so (libopenblas.so-arm-linux-gnueabihf) in auto mode 193s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 195s Regenerating fonts cache... done. 195s Setting up libxft2:armhf (2.3.6-1build1) ... 195s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-9ubuntu1) ... 195s Setting up libtk8.6:armhf (8.6.17-1) ... 195s Setting up libpango-1.0-0:armhf (1.56.3-2) ... 195s Setting up libcairo2:armhf (1.18.4-1build1) ... 195s Setting up gfortran-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 195s Setting up gcc-15 (15.2.0-9ubuntu1) ... 195s Setting up libopenblas-dev:armhf (0.3.30+ds-3) ... 195s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 195s Setting up libpangoft2-1.0-0:armhf (1.56.3-2) ... 195s Setting up gfortran-15 (15.2.0-9ubuntu1) ... 195s Setting up libpangocairo-1.0-0:armhf (1.56.3-2) ... 195s Setting up gcc (4:15.2.0-4ubuntu1) ... 195s Setting up r-base-core (4.5.2-1) ... 195s Creating config file /etc/R/Renviron with new version 195s Setting up r-cran-labeling (0.4.3-1) ... 195s Setting up r-cran-lattice (0.22-7-1) ... 195s Setting up r-cran-nlme (3.1.168-1) ... 195s Setting up r-cran-farver (2.1.2-1) ... 195s Setting up r-cran-viridislite (0.4.2-2) ... 195s Setting up r-cran-r6 (2.6.1-1) ... 195s Setting up r-cran-pkgkitten (0.2.4-1) ... 195s Setting up r-cran-magrittr (2.0.3-1) ... 195s Setting up r-cran-littler (0.3.21-2) ... 195s Setting up r-cran-rcpp (1.1.0-1) ... 195s Setting up r-cran-codetools (0.2-20-1) ... 195s Setting up r-cran-inline (0.3.21-1) ... 195s Setting up r-cran-rlang (1.1.5-3) ... 195s Setting up r-cran-withr (3.0.2+dfsg-1) ... 195s Setting up r-cran-iterators (1.0.14-1build1) ... 195s Setting up r-cran-foreach (1.5.2-1build1) ... 195s Setting up r-cran-fansi (1.0.6-2) ... 195s Setting up r-cran-mass (7.3-65-1) ... 195s Setting up r-cran-glue (1.8.0-1) ... 195s Setting up r-cran-gam (1.22-5-1) ... 195s Setting up r-cran-cli (3.6.4-1) ... 195s Setting up gfortran (4:15.2.0-4ubuntu1) ... 195s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 195s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 195s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 195s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 195s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 195s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 195s Setting up r-cran-utf8 (1.2.4-1) ... 195s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 195s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 195s Setting up r-cran-isoband (0.2.7-1) ... 195s Setting up r-cran-runit (0.4.33.1-1) ... 195s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 195s Setting up r-cran-matrix (1.7-4-1) ... 195s Setting up r-cran-mgcv (1.9-3-1) ... 195s Setting up r-cran-rcppgsl (0.3.13-1build1) ... 195s Setting up r-cran-vctrs (0.6.5-1) ... 195s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 195s Setting up r-cran-munsell (0.5.1-1) ... 195s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 195s Setting up r-cran-scales (1.3.0-1) ... 195s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 195s Setting up mapdamage (2.2.2+dfsg-1) ... 195s Processing triggers for install-info (7.2-5) ... 196s Processing triggers for libc-bin (2.42-2ubuntu2) ... 196s Processing triggers for man-db (2.13.1-1) ... 205s autopkgtest [14:26:11]: test run-unit-test: [----------------------- 210s Started with the command: /usr/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats 211s Successful run 211s additional tests/results/Length_plot.pdf generated 211s Reading from 'tests/test.bam' 211s Writing results to 'tests/results/' 211s pdf tests/results/Fragmisincorporation_plot.pdf generated 211s .. 211s ---------------------------------------------------------------------- 211s Ran 2 tests in 3.145s 211s 211s OK 211s autopkgtest [14:26:17]: test run-unit-test: -----------------------] 216s run-unit-test PASS 216s autopkgtest [14:26:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 220s autopkgtest [14:26:26]: test run-r-packages-check: preparing testbed 243s autopkgtest [14:26:49]: testbed dpkg architecture: armhf 246s autopkgtest [14:26:52]: testbed apt version: 3.1.12 250s autopkgtest [14:26:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 252s autopkgtest [14:26:58]: testbed release detected to be: resolute 260s autopkgtest [14:27:06]: updating testbed package index (apt update) 262s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 262s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 262s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 262s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 262s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.1 kB] 262s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [158 kB] 262s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [952 kB] 262s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [219 kB] 262s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [723 kB] 262s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [6500 B] 262s Get:11 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [305 kB] 262s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 264s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1414 kB] 264s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1366 kB] 264s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB] 264s Get:16 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 267s Fetched 42.2 MB in 5s (7700 kB/s) 268s Reading package lists... 275s autopkgtest [14:27:21]: upgrading testbed (apt dist-upgrade and autopurge) 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 278s Calculating upgrade... 278s The following packages will be upgraded: 278s libpython3-stdlib python3 python3-gdbm python3-minimal 279s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 279s Need to get 72.9 kB of archives. 279s After this operation, 2048 B of additional disk space will be used. 279s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.13.9-2 [28.1 kB] 279s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.13.9-2 [23.0 kB] 279s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.13.9-2 [10.8 kB] 279s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.13.9-2 [11.0 kB] 279s Fetched 72.9 kB in 1s (115 kB/s) 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 279s Preparing to unpack .../python3-minimal_3.13.9-2_armhf.deb ... 279s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 279s Setting up python3-minimal (3.13.9-2) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 280s Preparing to unpack .../python3_3.13.9-2_armhf.deb ... 280s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 280s Preparing to unpack .../libpython3-stdlib_3.13.9-2_armhf.deb ... 280s Unpacking libpython3-stdlib:armhf (3.13.9-2) over (3.13.7-1) ... 280s Preparing to unpack .../python3-gdbm_3.13.9-2_armhf.deb ... 280s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 280s Setting up python3-gdbm (3.13.9-2) ... 280s Setting up libpython3-stdlib:armhf (3.13.9-2) ... 280s Setting up python3 (3.13.9-2) ... 280s Processing triggers for man-db (2.13.1-1) ... 283s Reading package lists... 283s Building dependency tree... 283s Reading state information... 283s Solving dependencies... 284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s autopkgtest [14:27:32]: rebooting testbed after setup commands that affected boot 358s Reading package lists... 358s Building dependency tree... 358s Reading state information... 359s Solving dependencies... 359s The following NEW packages will be installed: 359s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 359s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 359s libgomp1 libgraphite2-3 libgsl-dev libgsl28 libgslcblas0 libharfbuzz0b 359s libhts3t64 libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 359s liblerc4 libopenblas-dev libopenblas-pthread-dev libopenblas0 359s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 359s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 359s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 359s libxft2 libxrender1 libxss1 libxt6t64 mapdamage python3-pysam r-base-core 359s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver 359s r-cran-foreach r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable 359s r-cran-inline r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 359s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 359s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 359s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 359s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 359s r-cran-viridislite r-cran-withr seqtk unzip x11-common xdg-utils zip 359s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 359s Need to get 83.4 MB of archives. 359s After this operation, 197 MB of additional disk space will be used. 359s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 360s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 360s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 360s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 360s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 360s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.3ubuntu1 [190 kB] 360s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 360s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 360s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 360s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 360s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 360s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 360s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 360s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 360s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-9ubuntu1 [334 kB] 360s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-9ubuntu1 [129 kB] 360s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 360s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf libgslcblas0 armhf 2.8+dfsg-5.1ubuntu1 [85.4 kB] 360s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf libgsl28 armhf 2.8+dfsg-5.1ubuntu1 [890 kB] 360s Get:20 http://ftpmaster.internal/ubuntu resolute/universe armhf libgsl-dev armhf 2.8+dfsg-5.1ubuntu1 [1153 kB] 361s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 361s Get:22 http://ftpmaster.internal/ubuntu resolute/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 361s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf libhts3t64 armhf 1.22.1+ds2-1 [408 kB] 361s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 361s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 361s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 361s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 361s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas0-pthread armhf 0.3.30+ds-3 [2882 kB] 362s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 362s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 362s Get:31 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas0 armhf 0.3.30+ds-3 [6306 B] 362s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas-pthread-dev armhf 0.3.30+ds-3 [2583 kB] 362s Get:33 http://ftpmaster.internal/ubuntu resolute/universe armhf libopenblas-dev armhf 0.3.30+ds-3 [21.3 kB] 362s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.29-2build2 [153 kB] 362s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.29-2build2 [15.4 kB] 362s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.3-2 [217 kB] 362s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.3-2 [44.0 kB] 362s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.3-2 [25.3 kB] 362s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 362s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 362s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 362s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 362s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 362s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 362s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 362s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 362s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 362s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 362s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 362s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 362s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 362s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-28ubuntu7 [168 kB] 362s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 362s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1 [28.5 MB] 363s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1 [90.5 kB] 363s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-iterators all 1.0.14-1build1 [336 kB] 363s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-foreach all 1.5.2-1build1 [124 kB] 363s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gam armhf 1.22-5-1 [382 kB] 363s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 363s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 363s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 363s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 363s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 363s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 363s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 364s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 364s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nlme armhf 3.1.168-1 [2304 kB] 364s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 364s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mgcv armhf 1.9-3-1 [3289 kB] 364s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 364s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 364s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-colorspace armhf 2.1-1+dfsg-1 [1561 kB] 364s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-munsell all 0.5.1-1 [213 kB] 364s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 364s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 364s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 364s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.3.0-1 [603 kB] 364s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 364s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 364s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 364s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 364s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 364s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 364s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 364s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 364s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 364s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-inline all 0.3.21-1 [131 kB] 364s Get:88 http://ftpmaster.internal/ubuntu resolute/universe armhf seqtk armhf 1.4-2 [35.3 kB] 364s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pysam armhf 0.23.3+ds-2 [4358 kB] 365s Get:90 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.21-2 [79.7 kB] 365s Get:91 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 365s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 365s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcppgsl armhf 0.3.13-1build1 [198 kB] 365s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf mapdamage all 2.2.2+dfsg-1 [43.3 kB] 365s Preconfiguring packages ... 365s Fetched 83.4 MB in 6s (14.7 MB/s) 365s Selecting previously unselected package libfreetype6:armhf. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65917 files and directories currently installed.) 366s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 366s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 366s Selecting previously unselected package fonts-dejavu-mono. 366s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 366s Unpacking fonts-dejavu-mono (2.37-8) ... 366s Selecting previously unselected package fonts-dejavu-core. 366s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 366s Unpacking fonts-dejavu-core (2.37-8) ... 366s Selecting previously unselected package fontconfig-config. 366s Preparing to unpack .../03-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 366s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 366s Selecting previously unselected package libfontconfig1:armhf. 366s Preparing to unpack .../04-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 366s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 366s Selecting previously unselected package fontconfig. 366s Preparing to unpack .../05-fontconfig_2.15.0-2.3ubuntu1_armhf.deb ... 366s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 366s Selecting previously unselected package libblas3:armhf. 366s Preparing to unpack .../06-libblas3_3.12.1-7_armhf.deb ... 366s Unpacking libblas3:armhf (3.12.1-7) ... 366s Selecting previously unselected package libpixman-1-0:armhf. 366s Preparing to unpack .../07-libpixman-1-0_0.46.4-1_armhf.deb ... 366s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 366s Selecting previously unselected package libxcb-render0:armhf. 366s Preparing to unpack .../08-libxcb-render0_1.17.0-2build1_armhf.deb ... 366s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 366s Selecting previously unselected package libxcb-shm0:armhf. 366s Preparing to unpack .../09-libxcb-shm0_1.17.0-2build1_armhf.deb ... 366s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 366s Selecting previously unselected package libxrender1:armhf. 366s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_armhf.deb ... 366s Unpacking libxrender1:armhf (1:0.9.12-1) ... 366s Selecting previously unselected package libcairo2:armhf. 366s Preparing to unpack .../11-libcairo2_1.18.4-1build1_armhf.deb ... 366s Unpacking libcairo2:armhf (1.18.4-1build1) ... 366s Selecting previously unselected package libdatrie1:armhf. 366s Preparing to unpack .../12-libdatrie1_0.2.14-1_armhf.deb ... 366s Unpacking libdatrie1:armhf (0.2.14-1) ... 366s Selecting previously unselected package libdeflate0:armhf. 366s Preparing to unpack .../13-libdeflate0_1.23-2_armhf.deb ... 366s Unpacking libdeflate0:armhf (1.23-2) ... 366s Selecting previously unselected package libgfortran5:armhf. 366s Preparing to unpack .../14-libgfortran5_15.2.0-9ubuntu1_armhf.deb ... 366s Unpacking libgfortran5:armhf (15.2.0-9ubuntu1) ... 366s Selecting previously unselected package libgomp1:armhf. 366s Preparing to unpack .../15-libgomp1_15.2.0-9ubuntu1_armhf.deb ... 366s Unpacking libgomp1:armhf (15.2.0-9ubuntu1) ... 366s Selecting previously unselected package libgraphite2-3:armhf. 366s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 366s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 366s Selecting previously unselected package libgslcblas0:armhf. 366s Preparing to unpack .../17-libgslcblas0_2.8+dfsg-5.1ubuntu1_armhf.deb ... 366s Unpacking libgslcblas0:armhf (2.8+dfsg-5.1ubuntu1) ... 366s Selecting previously unselected package libgsl28:armhf. 366s Preparing to unpack .../18-libgsl28_2.8+dfsg-5.1ubuntu1_armhf.deb ... 366s Unpacking libgsl28:armhf (2.8+dfsg-5.1ubuntu1) ... 366s Selecting previously unselected package libgsl-dev. 366s Preparing to unpack .../19-libgsl-dev_2.8+dfsg-5.1ubuntu1_armhf.deb ... 366s Unpacking libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 367s Selecting previously unselected package libharfbuzz0b:armhf. 367s Preparing to unpack .../20-libharfbuzz0b_12.1.0-1_armhf.deb ... 367s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 367s Selecting previously unselected package libhtscodecs2:armhf. 367s Preparing to unpack .../21-libhtscodecs2_1.6.1-2_armhf.deb ... 367s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 367s Selecting previously unselected package libhts3t64:armhf. 367s Preparing to unpack .../22-libhts3t64_1.22.1+ds2-1_armhf.deb ... 367s Unpacking libhts3t64:armhf (1.22.1+ds2-1) ... 367s Selecting previously unselected package x11-common. 367s Preparing to unpack .../23-x11-common_1%3a7.7+24ubuntu1_all.deb ... 367s Unpacking x11-common (1:7.7+24ubuntu1) ... 367s Selecting previously unselected package libice6:armhf. 367s Preparing to unpack .../24-libice6_2%3a1.1.1-1_armhf.deb ... 367s Unpacking libice6:armhf (2:1.1.1-1) ... 367s Selecting previously unselected package libjpeg-turbo8:armhf. 367s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 367s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 367s Selecting previously unselected package libjpeg8:armhf. 367s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_armhf.deb ... 367s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 367s Selecting previously unselected package libopenblas0-pthread:armhf. 367s Preparing to unpack .../27-libopenblas0-pthread_0.3.30+ds-3_armhf.deb ... 367s Unpacking libopenblas0-pthread:armhf (0.3.30+ds-3) ... 367s Selecting previously unselected package liblapack3:armhf. 367s Preparing to unpack .../28-liblapack3_3.12.1-7_armhf.deb ... 367s Unpacking liblapack3:armhf (3.12.1-7) ... 367s Selecting previously unselected package liblerc4:armhf. 367s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 367s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 367s Selecting previously unselected package libopenblas0:armhf. 367s Preparing to unpack .../30-libopenblas0_0.3.30+ds-3_armhf.deb ... 367s Unpacking libopenblas0:armhf (0.3.30+ds-3) ... 367s Selecting previously unselected package libopenblas-pthread-dev:armhf. 367s Preparing to unpack .../31-libopenblas-pthread-dev_0.3.30+ds-3_armhf.deb ... 367s Unpacking libopenblas-pthread-dev:armhf (0.3.30+ds-3) ... 367s Selecting previously unselected package libopenblas-dev:armhf. 367s Preparing to unpack .../32-libopenblas-dev_0.3.30+ds-3_armhf.deb ... 367s Unpacking libopenblas-dev:armhf (0.3.30+ds-3) ... 367s Selecting previously unselected package libthai-data. 367s Preparing to unpack .../33-libthai-data_0.1.29-2build2_all.deb ... 367s Unpacking libthai-data (0.1.29-2build2) ... 367s Selecting previously unselected package libthai0:armhf. 367s Preparing to unpack .../34-libthai0_0.1.29-2build2_armhf.deb ... 367s Unpacking libthai0:armhf (0.1.29-2build2) ... 367s Selecting previously unselected package libpango-1.0-0:armhf. 367s Preparing to unpack .../35-libpango-1.0-0_1.56.3-2_armhf.deb ... 367s Unpacking libpango-1.0-0:armhf (1.56.3-2) ... 367s Selecting previously unselected package libpangoft2-1.0-0:armhf. 367s Preparing to unpack .../36-libpangoft2-1.0-0_1.56.3-2_armhf.deb ... 367s Unpacking libpangoft2-1.0-0:armhf (1.56.3-2) ... 367s Selecting previously unselected package libpangocairo-1.0-0:armhf. 367s Preparing to unpack .../37-libpangocairo-1.0-0_1.56.3-2_armhf.deb ... 367s Unpacking libpangocairo-1.0-0:armhf (1.56.3-2) ... 367s Selecting previously unselected package libpaper2:armhf. 367s Preparing to unpack .../38-libpaper2_2.2.5-0.3_armhf.deb ... 367s Unpacking libpaper2:armhf (2.2.5-0.3) ... 367s Selecting previously unselected package libpaper-utils. 367s Preparing to unpack .../39-libpaper-utils_2.2.5-0.3_armhf.deb ... 367s Unpacking libpaper-utils (2.2.5-0.3) ... 367s Selecting previously unselected package libsharpyuv0:armhf. 367s Preparing to unpack .../40-libsharpyuv0_1.5.0-0.1_armhf.deb ... 367s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 367s Selecting previously unselected package libsm6:armhf. 367s Preparing to unpack .../41-libsm6_2%3a1.2.6-1_armhf.deb ... 367s Unpacking libsm6:armhf (2:1.2.6-1) ... 367s Selecting previously unselected package libtcl8.6:armhf. 367s Preparing to unpack .../42-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 367s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 367s Selecting previously unselected package libjbig0:armhf. 367s Preparing to unpack .../43-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 367s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 367s Selecting previously unselected package libwebp7:armhf. 368s Preparing to unpack .../44-libwebp7_1.5.0-0.1_armhf.deb ... 368s Unpacking libwebp7:armhf (1.5.0-0.1) ... 368s Selecting previously unselected package libtiff6:armhf. 368s Preparing to unpack .../45-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 368s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 368s Selecting previously unselected package libxft2:armhf. 368s Preparing to unpack .../46-libxft2_2.3.6-1build1_armhf.deb ... 368s Unpacking libxft2:armhf (2.3.6-1build1) ... 368s Selecting previously unselected package libxss1:armhf. 368s Preparing to unpack .../47-libxss1_1%3a1.2.3-1build3_armhf.deb ... 368s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 368s Selecting previously unselected package libtk8.6:armhf. 368s Preparing to unpack .../48-libtk8.6_8.6.17-1_armhf.deb ... 368s Unpacking libtk8.6:armhf (8.6.17-1) ... 368s Selecting previously unselected package libxt6t64:armhf. 368s Preparing to unpack .../49-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 368s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 368s Selecting previously unselected package zip. 368s Preparing to unpack .../50-zip_3.0-15ubuntu2_armhf.deb ... 368s Unpacking zip (3.0-15ubuntu2) ... 368s Selecting previously unselected package unzip. 368s Preparing to unpack .../51-unzip_6.0-28ubuntu7_armhf.deb ... 368s Unpacking unzip (6.0-28ubuntu7) ... 368s Selecting previously unselected package xdg-utils. 368s Preparing to unpack .../52-xdg-utils_1.2.1-2ubuntu1_all.deb ... 368s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 368s Selecting previously unselected package r-base-core. 368s Preparing to unpack .../53-r-base-core_4.5.2-1_armhf.deb ... 368s Unpacking r-base-core (4.5.2-1) ... 368s Selecting previously unselected package r-cran-codetools. 368s Preparing to unpack .../54-r-cran-codetools_0.2-20-1_all.deb ... 368s Unpacking r-cran-codetools (0.2-20-1) ... 368s Selecting previously unselected package r-cran-iterators. 368s Preparing to unpack .../55-r-cran-iterators_1.0.14-1build1_all.deb ... 368s Unpacking r-cran-iterators (1.0.14-1build1) ... 368s Selecting previously unselected package r-cran-foreach. 368s Preparing to unpack .../56-r-cran-foreach_1.5.2-1build1_all.deb ... 368s Unpacking r-cran-foreach (1.5.2-1build1) ... 368s Selecting previously unselected package r-cran-gam. 368s Preparing to unpack .../57-r-cran-gam_1.22-5-1_armhf.deb ... 368s Unpacking r-cran-gam (1.22-5-1) ... 368s Selecting previously unselected package r-cran-cli. 368s Preparing to unpack .../58-r-cran-cli_3.6.4-1_armhf.deb ... 368s Unpacking r-cran-cli (3.6.4-1) ... 368s Selecting previously unselected package r-cran-glue. 368s Preparing to unpack .../59-r-cran-glue_1.8.0-1_armhf.deb ... 368s Unpacking r-cran-glue (1.8.0-1) ... 368s Selecting previously unselected package r-cran-rlang. 368s Preparing to unpack .../60-r-cran-rlang_1.1.5-3_armhf.deb ... 368s Unpacking r-cran-rlang (1.1.5-3) ... 368s Selecting previously unselected package r-cran-lifecycle. 368s Preparing to unpack .../61-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 368s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 369s Selecting previously unselected package r-cran-gtable. 369s Preparing to unpack .../62-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 369s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 369s Selecting previously unselected package r-cran-isoband. 369s Preparing to unpack .../63-r-cran-isoband_0.2.7-1_armhf.deb ... 369s Unpacking r-cran-isoband (0.2.7-1) ... 369s Selecting previously unselected package r-cran-mass. 369s Preparing to unpack .../64-r-cran-mass_7.3-65-1_armhf.deb ... 369s Unpacking r-cran-mass (7.3-65-1) ... 369s Selecting previously unselected package r-cran-lattice. 369s Preparing to unpack .../65-r-cran-lattice_0.22-7-1_armhf.deb ... 369s Unpacking r-cran-lattice (0.22-7-1) ... 369s Selecting previously unselected package r-cran-nlme. 369s Preparing to unpack .../66-r-cran-nlme_3.1.168-1_armhf.deb ... 369s Unpacking r-cran-nlme (3.1.168-1) ... 369s Selecting previously unselected package r-cran-matrix. 369s Preparing to unpack .../67-r-cran-matrix_1.7-4-1_armhf.deb ... 369s Unpacking r-cran-matrix (1.7-4-1) ... 369s Selecting previously unselected package r-cran-mgcv. 369s Preparing to unpack .../68-r-cran-mgcv_1.9-3-1_armhf.deb ... 369s Unpacking r-cran-mgcv (1.9-3-1) ... 369s Selecting previously unselected package r-cran-farver. 369s Preparing to unpack .../69-r-cran-farver_2.1.2-1_armhf.deb ... 369s Unpacking r-cran-farver (2.1.2-1) ... 369s Selecting previously unselected package r-cran-labeling. 369s Preparing to unpack .../70-r-cran-labeling_0.4.3-1_all.deb ... 369s Unpacking r-cran-labeling (0.4.3-1) ... 369s Selecting previously unselected package r-cran-colorspace. 369s Preparing to unpack .../71-r-cran-colorspace_2.1-1+dfsg-1_armhf.deb ... 369s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 369s Selecting previously unselected package r-cran-munsell. 369s Preparing to unpack .../72-r-cran-munsell_0.5.1-1_all.deb ... 369s Unpacking r-cran-munsell (0.5.1-1) ... 369s Selecting previously unselected package r-cran-r6. 369s Preparing to unpack .../73-r-cran-r6_2.6.1-1_all.deb ... 369s Unpacking r-cran-r6 (2.6.1-1) ... 369s Selecting previously unselected package r-cran-rcolorbrewer. 369s Preparing to unpack .../74-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 369s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 369s Selecting previously unselected package r-cran-viridislite. 369s Preparing to unpack .../75-r-cran-viridislite_0.4.2-2_all.deb ... 369s Unpacking r-cran-viridislite (0.4.2-2) ... 369s Selecting previously unselected package r-cran-scales. 369s Preparing to unpack .../76-r-cran-scales_1.3.0-1_all.deb ... 369s Unpacking r-cran-scales (1.3.0-1) ... 369s Selecting previously unselected package r-cran-fansi. 369s Preparing to unpack .../77-r-cran-fansi_1.0.6-2_armhf.deb ... 369s Unpacking r-cran-fansi (1.0.6-2) ... 369s Selecting previously unselected package r-cran-magrittr. 369s Preparing to unpack .../78-r-cran-magrittr_2.0.3-1_armhf.deb ... 369s Unpacking r-cran-magrittr (2.0.3-1) ... 369s Selecting previously unselected package r-cran-utf8. 369s Preparing to unpack .../79-r-cran-utf8_1.2.4-1_armhf.deb ... 369s Unpacking r-cran-utf8 (1.2.4-1) ... 369s Selecting previously unselected package r-cran-vctrs. 369s Preparing to unpack .../80-r-cran-vctrs_0.6.5-1_armhf.deb ... 369s Unpacking r-cran-vctrs (0.6.5-1) ... 369s Selecting previously unselected package r-cran-pillar. 369s Preparing to unpack .../81-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 369s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 369s Selecting previously unselected package r-cran-pkgconfig. 369s Preparing to unpack .../82-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 369s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 369s Selecting previously unselected package r-cran-tibble. 369s Preparing to unpack .../83-r-cran-tibble_3.2.1+dfsg-3_armhf.deb ... 369s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 370s Selecting previously unselected package r-cran-withr. 370s Preparing to unpack .../84-r-cran-withr_3.0.2+dfsg-1_all.deb ... 370s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 370s Selecting previously unselected package r-cran-ggplot2. 370s Preparing to unpack .../85-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 370s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 370s Selecting previously unselected package r-cran-inline. 370s Preparing to unpack .../86-r-cran-inline_0.3.21-1_all.deb ... 370s Unpacking r-cran-inline (0.3.21-1) ... 370s Selecting previously unselected package seqtk. 370s Preparing to unpack .../87-seqtk_1.4-2_armhf.deb ... 370s Unpacking seqtk (1.4-2) ... 370s Selecting previously unselected package python3-pysam. 370s Preparing to unpack .../88-python3-pysam_0.23.3+ds-2_armhf.deb ... 370s Unpacking python3-pysam (0.23.3+ds-2) ... 370s Selecting previously unselected package r-cran-littler. 370s Preparing to unpack .../89-r-cran-littler_0.3.21-2_armhf.deb ... 370s Unpacking r-cran-littler (0.3.21-2) ... 370s Selecting previously unselected package r-cran-pkgkitten. 370s Preparing to unpack .../90-r-cran-pkgkitten_0.2.4-1_all.deb ... 370s Unpacking r-cran-pkgkitten (0.2.4-1) ... 370s Selecting previously unselected package r-cran-rcpp. 370s Preparing to unpack .../91-r-cran-rcpp_1.1.0-1_armhf.deb ... 370s Unpacking r-cran-rcpp (1.1.0-1) ... 370s Selecting previously unselected package r-cran-rcppgsl. 370s Preparing to unpack .../92-r-cran-rcppgsl_0.3.13-1build1_armhf.deb ... 370s Unpacking r-cran-rcppgsl (0.3.13-1build1) ... 370s Selecting previously unselected package mapdamage. 370s Preparing to unpack .../93-mapdamage_2.2.2+dfsg-1_all.deb ... 370s Unpacking mapdamage (2.2.2+dfsg-1) ... 370s Setting up libhtscodecs2:armhf (1.6.1-2) ... 370s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 370s Setting up libpixman-1-0:armhf (0.46.4-1) ... 370s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 370s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 370s Setting up seqtk (1.4-2) ... 370s Setting up libxrender1:armhf (1:0.9.12-1) ... 370s Setting up libdatrie1:armhf (0.2.14-1) ... 370s Setting up libgslcblas0:armhf (2.8+dfsg-5.1ubuntu1) ... 371s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 371s Setting up unzip (6.0-28ubuntu7) ... 371s Setting up x11-common (1:7.7+24ubuntu1) ... 371s Setting up libdeflate0:armhf (1.23-2) ... 371s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 371s Setting up libgomp1:armhf (15.2.0-9ubuntu1) ... 371s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 371s Setting up zip (3.0-15ubuntu2) ... 371s Setting up libblas3:armhf (3.12.1-7) ... 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 371s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 371s Setting up fonts-dejavu-mono (2.37-8) ... 371s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 371s Setting up fonts-dejavu-core (2.37-8) ... 371s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 371s Setting up libgfortran5:armhf (15.2.0-9ubuntu1) ... 371s Setting up libwebp7:armhf (1.5.0-0.1) ... 371s Setting up libhts3t64:armhf (1.22.1+ds2-1) ... 371s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 371s Setting up libthai-data (0.1.29-2build2) ... 371s Setting up libxss1:armhf (1:1.2.3-1build3) ... 371s Setting up libpaper2:armhf (2.2.5-0.3) ... 371s Setting up libgsl28:armhf (2.8+dfsg-5.1ubuntu1) ... 371s Setting up xdg-utils (1.2.1-2ubuntu1) ... 371s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 371s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 371s Setting up libice6:armhf (2:1.1.1-1) ... 371s Setting up liblapack3:armhf (3.12.1-7) ... 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 371s Setting up libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 371s Setting up libopenblas0-pthread:armhf (0.3.30+ds-3) ... 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so.0 to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so.0 (libopenblas.so.0-arm-linux-gnueabihf) in auto mode 371s Setting up python3-pysam (0.23.3+ds-2) ... 371s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 371s Setting up libpaper-utils (2.2.5-0.3) ... 371s Setting up libthai0:armhf (0.1.29-2build2) ... 371s Setting up libopenblas0:armhf (0.3.30+ds-3) ... 371s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 371s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 371s Setting up libsm6:armhf (2:1.2.6-1) ... 371s Setting up libopenblas-pthread-dev:armhf (0.3.30+ds-3) ... 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 371s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so (libopenblas.so-arm-linux-gnueabihf) in auto mode 371s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 373s Regenerating fonts cache... done. 373s Setting up libxft2:armhf (2.3.6-1build1) ... 373s Setting up libtk8.6:armhf (8.6.17-1) ... 373s Setting up libpango-1.0-0:armhf (1.56.3-2) ... 373s Setting up libcairo2:armhf (1.18.4-1build1) ... 373s Setting up libopenblas-dev:armhf (0.3.30+ds-3) ... 373s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 373s Setting up libpangoft2-1.0-0:armhf (1.56.3-2) ... 373s Setting up libpangocairo-1.0-0:armhf (1.56.3-2) ... 373s Setting up r-base-core (4.5.2-1) ... 374s Creating config file /etc/R/Renviron with new version 374s Setting up r-cran-labeling (0.4.3-1) ... 374s Setting up r-cran-lattice (0.22-7-1) ... 374s Setting up r-cran-nlme (3.1.168-1) ... 374s Setting up r-cran-farver (2.1.2-1) ... 374s Setting up r-cran-viridislite (0.4.2-2) ... 374s Setting up r-cran-r6 (2.6.1-1) ... 374s Setting up r-cran-pkgkitten (0.2.4-1) ... 374s Setting up r-cran-magrittr (2.0.3-1) ... 374s Setting up r-cran-littler (0.3.21-2) ... 374s Setting up r-cran-rcpp (1.1.0-1) ... 374s Setting up r-cran-codetools (0.2-20-1) ... 374s Setting up r-cran-inline (0.3.21-1) ... 374s Setting up r-cran-rlang (1.1.5-3) ... 374s Setting up r-cran-withr (3.0.2+dfsg-1) ... 374s Setting up r-cran-iterators (1.0.14-1build1) ... 374s Setting up r-cran-foreach (1.5.2-1build1) ... 374s Setting up r-cran-fansi (1.0.6-2) ... 374s Setting up r-cran-mass (7.3-65-1) ... 374s Setting up r-cran-glue (1.8.0-1) ... 374s Setting up r-cran-gam (1.22-5-1) ... 374s Setting up r-cran-cli (3.6.4-1) ... 374s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 374s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 374s Setting up r-cran-utf8 (1.2.4-1) ... 374s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 374s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 374s Setting up r-cran-isoband (0.2.7-1) ... 374s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 374s Setting up r-cran-matrix (1.7-4-1) ... 374s Setting up r-cran-mgcv (1.9-3-1) ... 374s Setting up r-cran-rcppgsl (0.3.13-1build1) ... 374s Setting up r-cran-vctrs (0.6.5-1) ... 374s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 374s Setting up r-cran-munsell (0.5.1-1) ... 374s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 374s Setting up r-cran-scales (1.3.0-1) ... 374s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 374s Setting up mapdamage (2.2.2+dfsg-1) ... 374s Processing triggers for install-info (7.2-5) ... 374s Processing triggers for libc-bin (2.42-2ubuntu2) ... 374s Processing triggers for man-db (2.13.1-1) ... 390s autopkgtest [14:29:16]: test run-r-packages-check: [----------------------- 394s All R packages are present 395s autopkgtest [14:29:21]: test run-r-packages-check: -----------------------] 399s autopkgtest [14:29:25]: test run-r-packages-check: - - - - - - - - - - results - - - - - - - - - - 399s run-r-packages-check PASS 403s autopkgtest [14:29:29]: @@@@@@@@@@@@@@@@@@@@ summary 403s run-unit-test PASS 403s run-r-packages-check PASS