0s autopkgtest [01:59:15]: starting date and time: 2026-02-06 01:59:15+0000 0s autopkgtest [01:59:15]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [01:59:15]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u9t40mdi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- lxd -r lxd-armhf-10.145.243.210 lxd-armhf-10.145.243.210:autopkgtest/ubuntu/resolute/armhf 24s autopkgtest [01:59:39]: testbed dpkg architecture: armhf 26s autopkgtest [01:59:41]: testbed apt version: 3.1.14 30s autopkgtest [01:59:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 33s autopkgtest [01:59:48]: testbed release detected to be: None 40s autopkgtest [01:59:55]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 43s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 43s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 43s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 43s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 43s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1631 kB] 44s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.4 kB] 44s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [221 kB] 44s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [255 kB] 44s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1333 kB] 44s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7492 B] 44s Get:12 http://ftpmaster.internal/ubuntu resolute/main Sources [1399 kB] 44s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 45s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 45s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1373 kB] 45s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 45s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 48s Fetched 43.7 MB in 6s (7924 kB/s) 50s Reading package lists... 57s autopkgtest [02:00:12]: upgrading testbed (apt dist-upgrade and autopurge) 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s The following packages will be upgraded: 61s libc-bin libc-gconv-modules-extra libc6 libdrm-amdgpu1 libdrm-common libdrm2 61s locales mawk 67s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 8039 kB of archives. 67s After this operation, 0 B of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 68s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 69s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 69s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf mawk armhf 1.3.4.20260129-1 [120 kB] 69s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 71s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-common all 2.4.131-1 [9774 B] 71s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm2 armhf 2.4.131-1 [38.0 kB] 71s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-amdgpu1 armhf 2.4.131-1 [20.9 kB] 71s Preconfiguring packages ... 71s Fetched 8039 kB in 9s (883 kB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 72s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 72s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 72s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 72s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 72s readlink: /usr/lib/libeatmydata: No such file or directory 72s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 72s Setting up libc6:armhf (2.42-2ubuntu5) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 73s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 73s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 73s Setting up libc-bin (2.42-2ubuntu5) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 73s Preparing to unpack .../mawk_1.3.4.20260129-1_armhf.deb ... 73s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 73s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 73s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 74s Preparing to unpack .../libdrm-common_2.4.131-1_all.deb ... 74s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 74s Preparing to unpack .../libdrm2_2.4.131-1_armhf.deb ... 74s Unpacking libdrm2:armhf (2.4.131-1) over (2.4.129-1) ... 74s Preparing to unpack .../libdrm-amdgpu1_2.4.131-1_armhf.deb ... 74s Unpacking libdrm-amdgpu1:armhf (2.4.131-1) over (2.4.129-1) ... 74s Setting up locales (2.42-2ubuntu5) ... 75s Generating locales (this might take a while)... 77s en_US.UTF-8... done 77s Generation complete. 77s Setting up mawk (1.3.4.20260129-1) ... 77s Setting up libdrm-common (2.4.131-1) ... 77s Setting up libdrm2:armhf (2.4.131-1) ... 77s Setting up libdrm-amdgpu1:armhf (2.4.131-1) ... 77s Processing triggers for systemd (259-1ubuntu3) ... 78s Processing triggers for man-db (2.13.1-1) ... 79s Processing triggers for libc-bin (2.42-2ubuntu5) ... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s Solving dependencies... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [02:00:40]: rebooting testbed after setup commands that affected boot 127s autopkgtest [02:01:22]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 155s autopkgtest [02:01:50]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 182s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (dsc) [2509 B] 182s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (tar) [12.3 MB] 182s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (diff) [54.3 kB] 182s gpgv: Signature made Tue Jul 23 18:45:44 2024 UTC 182s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 182s gpgv: issuer "emollier@debian.org" 182s gpgv: Can't check signature: No public key 182s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: no acceptable signature found 183s autopkgtest [02:02:18]: testing package libssw version 1.1-15 186s autopkgtest [02:02:21]: build not needed 189s autopkgtest [02:02:24]: test build-lib: preparing testbed 191s Reading package lists... 192s Building dependency tree... 192s Reading state information... 192s Solving dependencies... 193s The following NEW packages will be installed: 193s build-essential cpp cpp-15 cpp-15-arm-linux-gnueabihf 193s cpp-arm-linux-gnueabihf g++ g++-15 g++-15-arm-linux-gnueabihf 193s g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf 193s gcc-arm-linux-gnueabihf libasan8 libc-dev-bin libc6-dev libcc1-0 193s libcrypt-dev libgcc-15-dev libgomp1 libisl23 libmpc3 libssw-dev libssw0 193s libstdc++-15-dev libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 193s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 193s Need to get 54.3 MB of archives. 193s After this operation, 155 MB of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-dev-bin armhf 2.42-2ubuntu5 [21.8 kB] 193s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.18.0-9.9 [1819 kB] 194s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.5.1-1 [128 kB] 194s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1build1 [62.6 kB] 194s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6-dev armhf 2.42-2ubuntu5 [1416 kB] 194s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1build1 [553 kB] 194s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-2 [47.0 kB] 194s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [10.1 MB] 195s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-12ubuntu1 [1032 B] 195s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B] 195s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB] 195s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-12ubuntu1 [43.5 kB] 195s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-12ubuntu1 [129 kB] 195s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-12ubuntu1 [2949 kB] 195s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-12ubuntu1 [1187 kB] 195s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-12ubuntu1 [898 kB] 196s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [19.5 MB] 198s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-12ubuntu1 [499 kB] 198s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B] 198s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B] 198s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-12ubuntu1 [2638 kB] 198s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-12ubuntu1 [11.4 MB] 199s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15 armhf 15.2.0-12ubuntu1 [25.3 kB] 199s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [968 B] 199s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf g++ armhf 4:15.2.0-4ubuntu1 [1086 B] 199s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf build-essential armhf 12.12ubuntu2 [5256 B] 199s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf libssw0 armhf 1.1-15 [23.1 kB] 199s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf libssw-dev armhf 1.1-15 [24.4 kB] 199s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu2 [881 kB] 200s Fetched 54.3 MB in 6s (8716 kB/s) 200s Selecting previously unselected package libc-dev-bin. 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 200s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu5_armhf.deb ... 200s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 200s Selecting previously unselected package linux-libc-dev:armhf. 200s Preparing to unpack .../01-linux-libc-dev_6.18.0-9.9_armhf.deb ... 200s Unpacking linux-libc-dev:armhf (6.18.0-9.9) ... 200s Selecting previously unselected package libcrypt-dev:armhf. 200s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_armhf.deb ... 200s Unpacking libcrypt-dev:armhf (1:4.5.1-1) ... 200s Selecting previously unselected package rpcsvc-proto. 200s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_armhf.deb ... 200s Unpacking rpcsvc-proto (1.4.3-1build1) ... 200s Selecting previously unselected package libc6-dev:armhf. 200s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu5_armhf.deb ... 200s Unpacking libc6-dev:armhf (2.42-2ubuntu5) ... 200s Selecting previously unselected package libisl23:armhf. 200s Preparing to unpack .../05-libisl23_0.27-1build1_armhf.deb ... 200s Unpacking libisl23:armhf (0.27-1build1) ... 200s Selecting previously unselected package libmpc3:armhf. 200s Preparing to unpack .../06-libmpc3_1.3.1-2_armhf.deb ... 200s Unpacking libmpc3:armhf (1.3.1-2) ... 200s Selecting previously unselected package cpp-15-arm-linux-gnueabihf. 200s Preparing to unpack .../07-cpp-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 200s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package cpp-15. 201s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package cpp-arm-linux-gnueabihf. 201s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 201s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 201s Selecting previously unselected package cpp. 201s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ... 201s Unpacking cpp (4:15.2.0-4ubuntu1) ... 201s Selecting previously unselected package libcc1-0:armhf. 201s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking libcc1-0:armhf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package libgomp1:armhf. 201s Preparing to unpack .../12-libgomp1_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking libgomp1:armhf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package libasan8:armhf. 201s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking libasan8:armhf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package libubsan1:armhf. 201s Preparing to unpack .../14-libubsan1_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking libubsan1:armhf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package libgcc-15-dev:armhf. 201s Preparing to unpack .../15-libgcc-15-dev_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 201s Selecting previously unselected package gcc-15-arm-linux-gnueabihf. 201s Preparing to unpack .../16-gcc-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 201s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 202s Selecting previously unselected package gcc-15. 202s Preparing to unpack .../17-gcc-15_15.2.0-12ubuntu1_armhf.deb ... 202s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 202s Selecting previously unselected package gcc-arm-linux-gnueabihf. 202s Preparing to unpack .../18-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 202s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 202s Selecting previously unselected package gcc. 202s Preparing to unpack .../19-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ... 202s Unpacking gcc (4:15.2.0-4ubuntu1) ... 202s Selecting previously unselected package libstdc++-15-dev:armhf. 202s Preparing to unpack .../20-libstdc++-15-dev_15.2.0-12ubuntu1_armhf.deb ... 202s Unpacking libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 202s Selecting previously unselected package g++-15-arm-linux-gnueabihf. 202s Preparing to unpack .../21-g++-15-arm-linux-gnueabihf_15.2.0-12ubuntu1_armhf.deb ... 202s Unpacking g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 202s Selecting previously unselected package g++-15. 202s Preparing to unpack .../22-g++-15_15.2.0-12ubuntu1_armhf.deb ... 202s Unpacking g++-15 (15.2.0-12ubuntu1) ... 202s Selecting previously unselected package g++-arm-linux-gnueabihf. 202s Preparing to unpack .../23-g++-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ... 202s Unpacking g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 202s Selecting previously unselected package g++. 202s Preparing to unpack .../24-g++_4%3a15.2.0-4ubuntu1_armhf.deb ... 202s Unpacking g++ (4:15.2.0-4ubuntu1) ... 202s Selecting previously unselected package build-essential. 202s Preparing to unpack .../25-build-essential_12.12ubuntu2_armhf.deb ... 202s Unpacking build-essential (12.12ubuntu2) ... 202s Selecting previously unselected package libssw0:armhf. 202s Preparing to unpack .../26-libssw0_1.1-15_armhf.deb ... 202s Unpacking libssw0:armhf (1.1-15) ... 202s Selecting previously unselected package libssw-dev:armhf. 203s Preparing to unpack .../27-libssw-dev_1.1-15_armhf.deb ... 203s Unpacking libssw-dev:armhf (1.1-15) ... 203s Selecting previously unselected package zlib1g-dev:armhf. 203s Preparing to unpack .../28-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_armhf.deb ... 203s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 203s Setting up linux-libc-dev:armhf (6.18.0-9.9) ... 203s Setting up libgomp1:armhf (15.2.0-12ubuntu1) ... 203s Setting up rpcsvc-proto (1.4.3-1build1) ... 203s Setting up libmpc3:armhf (1.3.1-2) ... 203s Setting up libubsan1:armhf (15.2.0-12ubuntu1) ... 203s Setting up libcrypt-dev:armhf (1:4.5.1-1) ... 203s Setting up libasan8:armhf (15.2.0-12ubuntu1) ... 203s Setting up libisl23:armhf (0.27-1build1) ... 203s Setting up libc-dev-bin (2.42-2ubuntu5) ... 203s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 203s Setting up libssw0:armhf (1.1-15) ... 203s Setting up libcc1-0:armhf (15.2.0-12ubuntu1) ... 203s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 203s Setting up libgcc-15-dev:armhf (15.2.0-12ubuntu1) ... 203s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 203s Setting up libssw-dev:armhf (1.1-15) ... 203s Setting up cpp-15 (15.2.0-12ubuntu1) ... 203s Setting up cpp (4:15.2.0-4ubuntu1) ... 203s Setting up libc6-dev:armhf (2.42-2ubuntu5) ... 203s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 203s Setting up gcc-15 (15.2.0-12ubuntu1) ... 203s Setting up libstdc++-15-dev:armhf (15.2.0-12ubuntu1) ... 203s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 203s Setting up g++-15-arm-linux-gnueabihf (15.2.0-12ubuntu1) ... 203s Setting up gcc (4:15.2.0-4ubuntu1) ... 203s Setting up g++-15 (15.2.0-12ubuntu1) ... 203s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ... 203s Setting up g++ (4:15.2.0-4ubuntu1) ... 203s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 203s Setting up build-essential (12.12ubuntu2) ... 203s Processing triggers for man-db (2.13.1-1) ... 203s Processing triggers for libc-bin (2.42-2ubuntu5) ... 216s autopkgtest [02:02:51]: test build-lib: [----------------------- 218s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 218s 218s Target: 9 CTGACCCGG-AAATC 22 218s ||||*||||*||||| 218s Query: 1 CTGAGCCGGTAAATC 15 218s 219s ===== SSW result ===== 219s Best Smith-Waterman score: 21 219s Next-best Smith-Waterman score: 8 219s Reference start: 8 219s Reference end: 21 219s Query start: 0 219s Query end: 14 219s Next-best reference end: 4 219s Number of mismatches: 2 219s Cigar: 4=1X4=1I5= 219s ====================== 219s autopkgtest [02:02:54]: test build-lib: -----------------------] 224s autopkgtest [02:02:59]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 224s build-lib PASS 228s autopkgtest [02:03:03]: test build-lib-java: preparing testbed 254s autopkgtest [02:03:29]: testbed dpkg architecture: armhf 256s autopkgtest [02:03:31]: testbed apt version: 3.1.14 260s autopkgtest [02:03:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 262s autopkgtest [02:03:37]: testbed release detected to be: resolute 270s autopkgtest [02:03:45]: updating testbed package index (apt update) 272s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 272s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 272s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 272s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 272s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1631 kB] 273s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 273s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [221 kB] 273s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.4 kB] 273s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [255 kB] 273s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1333 kB] 273s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7492 B] 273s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 274s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1399 kB] 274s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 274s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1373 kB] 274s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 275s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 278s Fetched 43.7 MB in 6s (7328 kB/s) 279s Reading package lists... 285s autopkgtest [02:04:00]: upgrading testbed (apt dist-upgrade and autopurge) 287s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Calculating upgrade... 289s The following packages will be upgraded: 289s libc-bin libc-gconv-modules-extra libc6 libdrm-amdgpu1 libdrm-common libdrm2 289s locales mawk 289s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 289s Need to get 8039 kB of archives. 289s After this operation, 0 B of additional disk space will be used. 289s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 291s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 292s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 293s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf mawk armhf 1.3.4.20260129-1 [120 kB] 293s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 295s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-common all 2.4.131-1 [9774 B] 295s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm2 armhf 2.4.131-1 [38.0 kB] 295s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-amdgpu1 armhf 2.4.131-1 [20.9 kB] 296s Preconfiguring packages ... 296s Fetched 8039 kB in 6s (1318 kB/s) 296s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 296s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 296s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 297s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 297s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 297s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 297s readlink: /usr/lib/libeatmydata: No such file or directory 297s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 297s Setting up libc6:armhf (2.42-2ubuntu5) ... 297s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 297s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 297s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 298s Setting up libc-bin (2.42-2ubuntu5) ... 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 298s Preparing to unpack .../mawk_1.3.4.20260129-1_armhf.deb ... 298s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 298s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 298s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 298s Preparing to unpack .../libdrm-common_2.4.131-1_all.deb ... 298s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 298s Preparing to unpack .../libdrm2_2.4.131-1_armhf.deb ... 298s Unpacking libdrm2:armhf (2.4.131-1) over (2.4.129-1) ... 298s Preparing to unpack .../libdrm-amdgpu1_2.4.131-1_armhf.deb ... 298s Unpacking libdrm-amdgpu1:armhf (2.4.131-1) over (2.4.129-1) ... 298s Setting up locales (2.42-2ubuntu5) ... 299s Generating locales (this might take a while)... 302s en_US.UTF-8... done 302s Generation complete. 302s Setting up mawk (1.3.4.20260129-1) ... 302s Setting up libdrm-common (2.4.131-1) ... 302s Setting up libdrm2:armhf (2.4.131-1) ... 302s Setting up libdrm-amdgpu1:armhf (2.4.131-1) ... 302s Processing triggers for systemd (259-1ubuntu3) ... 302s Processing triggers for man-db (2.13.1-1) ... 304s Processing triggers for libc-bin (2.42-2ubuntu5) ... 306s Reading package lists... 306s Building dependency tree... 306s Reading state information... 307s Solving dependencies... 308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s autopkgtest [02:04:25]: rebooting testbed after setup commands that affected boot 382s Reading package lists... 382s Building dependency tree... 382s Reading state information... 382s Solving dependencies... 383s The following NEW packages will be installed: 383s ca-certificates-java default-jdk-headless default-jre-headless java-common 383s libjpeg-turbo8 libjpeg8 liblcms2-2 libpcsclite1 libssw-java 383s openjdk-21-jdk-headless openjdk-21-jre-headless 383s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 383s Need to get 119 MB of archives. 383s After this operation, 262 MB of additional disk space will be used. 383s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf ca-certificates-java all 20240118build1 [11.7 kB] 384s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf java-common all 0.76build1 [6956 B] 384s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 384s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 385s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 385s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpcsclite1 armhf 2.4.1-1 [25.3 kB] 385s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf openjdk-21-jre-headless armhf 21.0.10+7-1 [39.8 MB] 397s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf default-jre-headless armhf 2:1.21-76build1 [3268 B] 397s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf openjdk-21-jdk-headless armhf 21.0.10+7-1 [78.4 MB] 402s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf default-jdk-headless armhf 2:1.21-76build1 [966 B] 402s Get:11 http://ftpmaster.internal/ubuntu resolute/universe armhf libssw-java armhf 1.1-15 [20.6 kB] 402s Fetched 119 MB in 19s (6344 kB/s) 402s Selecting previously unselected package ca-certificates-java. 403s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 403s Preparing to unpack .../00-ca-certificates-java_20240118build1_all.deb ... 403s Unpacking ca-certificates-java (20240118build1) ... 403s Selecting previously unselected package java-common. 403s Preparing to unpack .../01-java-common_0.76build1_all.deb ... 403s Unpacking java-common (0.76build1) ... 403s Selecting previously unselected package liblcms2-2:armhf. 403s Preparing to unpack .../02-liblcms2-2_2.17-1_armhf.deb ... 403s Unpacking liblcms2-2:armhf (2.17-1) ... 403s Selecting previously unselected package libjpeg-turbo8:armhf. 403s Preparing to unpack .../03-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 403s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 403s Selecting previously unselected package libjpeg8:armhf. 403s Preparing to unpack .../04-libjpeg8_8c-2ubuntu11_armhf.deb ... 403s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 403s Selecting previously unselected package libpcsclite1:armhf. 403s Preparing to unpack .../05-libpcsclite1_2.4.1-1_armhf.deb ... 403s Unpacking libpcsclite1:armhf (2.4.1-1) ... 403s Selecting previously unselected package openjdk-21-jre-headless:armhf. 403s Preparing to unpack .../06-openjdk-21-jre-headless_21.0.10+7-1_armhf.deb ... 403s Unpacking openjdk-21-jre-headless:armhf (21.0.10+7-1) ... 404s Selecting previously unselected package default-jre-headless. 404s Preparing to unpack .../07-default-jre-headless_2%3a1.21-76build1_armhf.deb ... 404s Unpacking default-jre-headless (2:1.21-76build1) ... 404s Selecting previously unselected package openjdk-21-jdk-headless:armhf. 405s Preparing to unpack .../08-openjdk-21-jdk-headless_21.0.10+7-1_armhf.deb ... 405s Unpacking openjdk-21-jdk-headless:armhf (21.0.10+7-1) ... 405s Selecting previously unselected package default-jdk-headless. 405s Preparing to unpack .../09-default-jdk-headless_2%3a1.21-76build1_armhf.deb ... 405s Unpacking default-jdk-headless (2:1.21-76build1) ... 405s Selecting previously unselected package libssw-java. 405s Preparing to unpack .../10-libssw-java_1.1-15_armhf.deb ... 405s Unpacking libssw-java (1.1-15) ... 405s Setting up liblcms2-2:armhf (2.17-1) ... 405s Setting up java-common (0.76build1) ... 405s Setting up libssw-java (1.1-15) ... 405s Setting up libpcsclite1:armhf (2.4.1-1) ... 405s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 405s Setting up ca-certificates-java (20240118build1) ... 405s No JRE found. Skipping Java certificates setup. 405s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 405s Setting up openjdk-21-jre-headless:armhf (21.0.10+7-1) ... 405s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode 405s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 405s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 405s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 405s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 405s Processing triggers for libc-bin (2.42-2ubuntu5) ... 405s Processing triggers for man-db (2.13.1-1) ... 406s Processing triggers for ca-certificates-java (20240118build1) ... 407s Adding debian:ACCVRAIZ1.pem 407s Adding debian:AC_RAIZ_FNMT-RCM.pem 407s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 407s Adding debian:ANF_Secure_Server_Root_CA.pem 407s Adding debian:Actalis_Authentication_Root_CA.pem 407s Adding debian:AffirmTrust_Commercial.pem 407s Adding debian:AffirmTrust_Networking.pem 407s Adding debian:AffirmTrust_Premium.pem 407s Adding debian:AffirmTrust_Premium_ECC.pem 407s Adding debian:Amazon_Root_CA_1.pem 407s Adding debian:Amazon_Root_CA_2.pem 407s Adding debian:Amazon_Root_CA_3.pem 407s Adding debian:Amazon_Root_CA_4.pem 407s Adding debian:Atos_TrustedRoot_2011.pem 407s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 407s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 407s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 407s Adding debian:BJCA_Global_Root_CA1.pem 407s Adding debian:BJCA_Global_Root_CA2.pem 407s Adding debian:Baltimore_CyberTrust_Root.pem 407s Adding debian:Buypass_Class_2_Root_CA.pem 407s Adding debian:Buypass_Class_3_Root_CA.pem 407s Adding debian:CA_Disig_Root_R2.pem 407s Adding debian:CFCA_EV_ROOT.pem 407s Adding debian:COMODO_Certification_Authority.pem 407s Adding debian:COMODO_ECC_Certification_Authority.pem 407s Adding debian:COMODO_RSA_Certification_Authority.pem 407s Adding debian:Certainly_Root_E1.pem 407s Adding debian:Certainly_Root_R1.pem 407s Adding debian:Certigna.pem 407s Adding debian:Certigna_Root_CA.pem 407s Adding debian:Certum_EC-384_CA.pem 407s Adding debian:Certum_Trusted_Network_CA.pem 407s Adding debian:Certum_Trusted_Network_CA_2.pem 407s Adding debian:Certum_Trusted_Root_CA.pem 407s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 407s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 407s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 407s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 407s Adding debian:Comodo_AAA_Services_root.pem 407s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 407s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem 407s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 407s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem 407s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 407s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 407s Adding debian:DigiCert_Assured_ID_Root_CA.pem 407s Adding debian:DigiCert_Assured_ID_Root_G2.pem 407s Adding debian:DigiCert_Assured_ID_Root_G3.pem 407s Adding debian:DigiCert_Global_Root_CA.pem 407s Adding debian:DigiCert_Global_Root_G2.pem 407s Adding debian:DigiCert_Global_Root_G3.pem 407s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 407s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 407s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 407s Adding debian:DigiCert_Trusted_Root_G4.pem 407s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 407s Adding debian:Entrust_Root_Certification_Authority.pem 407s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 407s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 407s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 407s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 407s Adding debian:GLOBALTRUST_2020.pem 407s Adding debian:GTS_Root_R1.pem 407s Adding debian:GTS_Root_R2.pem 407s Adding debian:GTS_Root_R3.pem 407s Adding debian:GTS_Root_R4.pem 407s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 407s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 407s Adding debian:GlobalSign_Root_CA.pem 407s Adding debian:GlobalSign_Root_CA_-_R3.pem 407s Adding debian:GlobalSign_Root_CA_-_R6.pem 407s Adding debian:GlobalSign_Root_E46.pem 407s Adding debian:GlobalSign_Root_R46.pem 407s Adding debian:Go_Daddy_Class_2_CA.pem 407s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 407s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 407s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 407s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 407s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 407s Adding debian:HiPKI_Root_CA_-_G1.pem 407s Adding debian:Hongkong_Post_Root_CA_3.pem 407s Adding debian:ISRG_Root_X1.pem 407s Adding debian:ISRG_Root_X2.pem 407s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 407s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 407s Adding debian:Izenpe.com.pem 407s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 407s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 407s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 407s Adding debian:NAVER_Global_Root_Certification_Authority.pem 407s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 407s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 407s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 407s Adding debian:QuoVadis_Root_CA_1_G3.pem 407s Adding debian:QuoVadis_Root_CA_2.pem 407s Adding debian:QuoVadis_Root_CA_2_G3.pem 407s Adding debian:QuoVadis_Root_CA_3.pem 407s Adding debian:QuoVadis_Root_CA_3_G3.pem 407s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 407s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 407s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 407s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 407s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 407s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 407s Adding debian:SZAFIR_ROOT_CA2.pem 407s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 407s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 407s Adding debian:SecureSign_Root_CA12.pem 407s Adding debian:SecureSign_Root_CA14.pem 407s Adding debian:SecureSign_Root_CA15.pem 407s Adding debian:SecureTrust_CA.pem 407s Adding debian:Secure_Global_CA.pem 407s Adding debian:Security_Communication_ECC_RootCA1.pem 407s Adding debian:Security_Communication_RootCA2.pem 407s Adding debian:Starfield_Class_2_CA.pem 407s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 407s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 407s Adding debian:SwissSign_Gold_CA_-_G2.pem 407s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 407s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 407s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 407s Adding debian:TWCA_CYBER_Root_CA.pem 407s Adding debian:TWCA_Global_Root_CA.pem 407s Adding debian:TWCA_Root_Certification_Authority.pem 407s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 407s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 407s Adding debian:TeliaSonera_Root_CA_v1.pem 407s Adding debian:Telia_Root_CA_v2.pem 407s Adding debian:TrustAsia_Global_Root_CA_G3.pem 407s Adding debian:TrustAsia_Global_Root_CA_G4.pem 407s Adding debian:Trustwave_Global_Certification_Authority.pem 407s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 407s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 407s Adding debian:TunTrust_Root_CA.pem 407s Adding debian:UCA_Extended_Validation_Root.pem 407s Adding debian:UCA_Global_G2_Root.pem 407s Adding debian:USERTrust_ECC_Certification_Authority.pem 407s Adding debian:USERTrust_RSA_Certification_Authority.pem 407s Adding debian:XRamp_Global_CA_Root.pem 407s Adding debian:certSIGN_ROOT_CA.pem 407s Adding debian:certSIGN_Root_CA_G2.pem 407s Adding debian:e-Szigno_Root_CA_2017.pem 407s Adding debian:ePKI_Root_Certification_Authority.pem 407s Adding debian:emSign_ECC_Root_CA_-_C3.pem 407s Adding debian:emSign_ECC_Root_CA_-_G3.pem 407s Adding debian:emSign_Root_CA_-_C1.pem 407s Adding debian:emSign_Root_CA_-_G1.pem 407s Adding debian:vTrus_ECC_Root_CA.pem 407s Adding debian:vTrus_Root_CA.pem 407s done. 407s Setting up openjdk-21-jdk-headless:armhf (21.0.10+7-1) ... 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 407s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 407s Setting up default-jre-headless (2:1.21-76build1) ... 407s Setting up default-jdk-headless (2:1.21-76build1) ... 440s autopkgtest [02:06:35]: test build-lib-java: [----------------------- 444s Aligning nucleotides 444s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 445s autopkgtest [02:06:40]: test build-lib-java: -----------------------] 450s autopkgtest [02:06:45]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 450s build-lib-java PASS 454s autopkgtest [02:06:49]: test run-example: preparing testbed 479s autopkgtest [02:07:14]: testbed dpkg architecture: armhf 482s autopkgtest [02:07:17]: testbed apt version: 3.1.14 486s autopkgtest [02:07:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 488s autopkgtest [02:07:23]: testbed release detected to be: resolute 498s autopkgtest [02:07:33]: updating testbed package index (apt update) 500s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 500s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 500s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 500s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 501s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.4 kB] 501s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1631 kB] 501s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [221 kB] 501s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 501s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [255 kB] 501s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1333 kB] 501s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [7492 B] 501s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 502s Get:13 http://ftpmaster.internal/ubuntu resolute/main Sources [1399 kB] 502s Get:14 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 502s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1373 kB] 503s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.1 MB] 504s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [176 kB] 505s Fetched 43.7 MB in 5s (8130 kB/s) 507s Reading package lists... 513s autopkgtest [02:07:48]: upgrading testbed (apt dist-upgrade and autopurge) 515s Reading package lists... 516s Building dependency tree... 516s Reading state information... 516s Calculating upgrade... 517s The following packages will be upgraded: 517s libc-bin libc-gconv-modules-extra libc6 libdrm-amdgpu1 libdrm-common libdrm2 517s locales mawk 517s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 517s Need to get 8039 kB of archives. 517s After this operation, 0 B of additional disk space will be used. 517s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 518s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 518s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 518s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf mawk armhf 1.3.4.20260129-1 [120 kB] 518s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 518s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-common all 2.4.131-1 [9774 B] 518s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm2 armhf 2.4.131-1 [38.0 kB] 518s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-amdgpu1 armhf 2.4.131-1 [20.9 kB] 519s Preconfiguring packages ... 519s Fetched 8039 kB in 1s (9146 kB/s) 519s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 519s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 519s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 519s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 519s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 519s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 519s readlink: /usr/lib/libeatmydata: No such file or directory 519s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 519s Setting up libc6:armhf (2.42-2ubuntu5) ... 520s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 520s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 520s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 520s Setting up libc-bin (2.42-2ubuntu5) ... 520s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 520s Preparing to unpack .../mawk_1.3.4.20260129-1_armhf.deb ... 520s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 520s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 520s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 520s Preparing to unpack .../libdrm-common_2.4.131-1_all.deb ... 520s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 520s Preparing to unpack .../libdrm2_2.4.131-1_armhf.deb ... 520s Unpacking libdrm2:armhf (2.4.131-1) over (2.4.129-1) ... 520s Preparing to unpack .../libdrm-amdgpu1_2.4.131-1_armhf.deb ... 520s Unpacking libdrm-amdgpu1:armhf (2.4.131-1) over (2.4.129-1) ... 521s Setting up locales (2.42-2ubuntu5) ... 521s Generating locales (this might take a while)... 524s en_US.UTF-8... done 524s Generation complete. 524s Setting up mawk (1.3.4.20260129-1) ... 524s Setting up libdrm-common (2.4.131-1) ... 524s Setting up libdrm2:armhf (2.4.131-1) ... 524s Setting up libdrm-amdgpu1:armhf (2.4.131-1) ... 524s Processing triggers for systemd (259-1ubuntu3) ... 525s Processing triggers for man-db (2.13.1-1) ... 526s Processing triggers for libc-bin (2.42-2ubuntu5) ... 528s Reading package lists... 529s Building dependency tree... 529s Reading state information... 529s Solving dependencies... 530s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 532s autopkgtest [02:08:07]: rebooting testbed after setup commands that affected boot 603s Reading package lists... 604s Building dependency tree... 604s Reading state information... 604s Solving dependencies... 605s The following NEW packages will be installed: 605s libssw0 ssw-align 605s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 605s Need to get 45.9 kB of archives. 605s After this operation, 103 kB of additional disk space will be used. 605s Get:1 http://ftpmaster.internal/ubuntu resolute/universe armhf libssw0 armhf 1.1-15 [23.1 kB] 606s Get:2 http://ftpmaster.internal/ubuntu resolute/universe armhf ssw-align armhf 1.1-15 [22.8 kB] 606s Fetched 45.9 kB in 1s (55.3 kB/s) 606s Selecting previously unselected package libssw0:armhf. 606s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 606s Preparing to unpack .../libssw0_1.1-15_armhf.deb ... 606s Unpacking libssw0:armhf (1.1-15) ... 606s Selecting previously unselected package ssw-align. 606s Preparing to unpack .../ssw-align_1.1-15_armhf.deb ... 606s Unpacking ssw-align (1.1-15) ... 607s Setting up libssw0:armhf (1.1-15) ... 607s Setting up ssw-align (1.1-15) ... 607s Processing triggers for libc-bin (2.42-2ubuntu5) ... 607s Processing triggers for man-db (2.13.1-1) ... 627s autopkgtest [02:09:42]: test run-example: [----------------------- 629s target_name: chr1 629s query_name: chr1 629s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 629s 629s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 629s 629s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 629s 629s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 629s 629s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 629s 629s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 629s 629s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 629s 629s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 629s 629s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 629s 629s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 629s 629s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 629s 629s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 629s 629s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 629s 629s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 629s 629s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 629s 629s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 629s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 629s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 629s 774s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 774s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 774s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 774s 774s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 774s ||||||||||||||||||||||||||||||||||||||||| 774s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 774s 774s target_name: chr2 774s query_name: chr1 774s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 774s 774s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 774s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 774s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 774s 774s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 774s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 774s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 774s 774s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 774s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 774s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 774s 774s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 774s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 774s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 774s 774s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 774s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 774s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 774s 774s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 774s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 774s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 774s 774s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 774s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 774s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 774s 774s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 774s | *||*||||||| ||**| | |||||||| |*||| ||| 774s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 774s 774s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 774s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 774s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 774s 774s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 774s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 774s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 774s 774s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 774s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 774s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 774s 774s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 774s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 774s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 774s 774s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 774s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 774s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 774s 774s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 788s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 788s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 788s 788s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 788s || || || |||| || || || |||*|||| |||| |*|| || ||| || 788s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 788s 788s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 788s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 788s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 788s 788s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 788s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 788s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 788s 788s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 788s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 788s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 788s 788s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 788s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 788s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 788s 788s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 788s *||||| |*|||*||||| 788s Query: 955 --TACTTC-TAATTTTTCAC 971 788s 788s target_name: chr3 788s query_name: chr1 788s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 788s 788s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 788s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 788s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 788s 788s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 788s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 788s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 788s 788s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 788s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 788s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 788s 788s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 788s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 788s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 788s 788s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 788s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 788s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 788s 788s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 788s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 788s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 788s 788s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 788s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 788s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 788s 788s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 788s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 788s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 788s 788s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 788s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 790s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 790s 790s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 790s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 790s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 790s 790s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 790s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 790s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 790s 790s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 790s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 790s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 790s 790s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 790s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 790s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 790s 790s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 790s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 790s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 790s 790s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 790s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 790s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 790s 790s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 790s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 790s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 790s 790s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 790s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 790s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 790s 790s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 790s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 790s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 790s 790s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 790s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 790s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 790s 790s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 790s *|||| |*|||||*||| || |*|||*||*|| 790s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 790s 790s target_name: chr4 790s query_name: chr1 790s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 790s 790s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 790s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 790s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 790s 790s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 790s ||| || |||***||| |||| |||| |||| || ||| || 790s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 790s 790s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 790s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 790s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 790s 790s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 790s || |||| ||||||| || |*|||||*||||*|*|| 790s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 790s 790s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 790s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 790s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 790s 790s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 790s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 790s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 790s 790s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 790s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 790s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 790s 790s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 790s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 790s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 790s 790s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 790s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 790s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 790s 790s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 790s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 790s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 790s 790s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 790s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 790s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 790s 790s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 790s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 790s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 790s 790s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 790s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 790s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 790s 790s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 790s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 790s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 790s 790s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 790s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 790s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 790s 790s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 790s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 790s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 790s 790s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 790s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 790s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 790s 790s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 790s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 790s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 790s 790s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 790s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 790s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 790s 790s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 790s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 790s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 790s 790s Target: 48049 GAA---AT--AAAGTA 48059 790s ||| || ||| || 790s Query: 987 GAATGGATCCAAA-TA 1001 790s 790s target_name: chr5 790s query_name: chr1 790s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 790s 790s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 790s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 790s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 790s 790s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 790s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 790s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 790s 790s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 790s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 790s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 790s 790s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 790s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 790s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 790s 790s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 790s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 790s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 790s 790s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 790s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 790s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 790s 790s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 790s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 790s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 790s 790s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 790s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 790s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 790s 790s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 790s | |||||| ||||*|| | || | ||| |*||*||| || 790s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 790s 790s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 790s |||****| |||| |*|*|***|||*| ||*|*| ||| || 790s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 790s 790s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 790s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 790s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 790s 790s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 790s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 790s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 790s 790s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 790s | | || |||| ||||| |*|| |||| ||||*||| |||| || 790s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 790s 790s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 790s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 790s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 790s 790s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 790s ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 160.463333 seconds 790s || ||*|*||||*|| 790s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 790s 790s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 790s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 790s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 790s 790s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 790s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 790s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 790s 790s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 790s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 790s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 790s 790s Target: 9707 TGTTGATTGTTTC-CTTT 9723 790s |**|*||| |||| |||| 790s Query: 958 TTCTAATT-TTTCACTTT 974 790s 790s target_name: chr1 790s query_name: chr1 790s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 790s 790s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 790s 790s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 790s 790s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 790s 790s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 790s 790s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 790s 790s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 790s 790s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 790s 790s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 790s 790s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 790s 790s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 790s 790s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 790s 790s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 790s 790s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 790s 790s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 790s 790s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 790s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 790s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 790s 933s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 933s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 933s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 933s 933s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 933s ||||||||||||||||||||||||||||||||||||||||| 933s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 933s 933s target_name: chr2 933s query_name: chr1 933s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 933s 933s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 933s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 933s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 933s 933s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 933s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 933s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 933s 933s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 933s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 933s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 933s 933s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 933s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 933s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 933s 933s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 933s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 933s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 933s 933s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 933s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 933s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 933s 933s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 933s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 933s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 933s 933s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 933s | *||*||||||| ||**| | |||||||| |*||| ||| 933s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 933s 933s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 933s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 933s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 933s 933s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 933s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 933s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 933s 933s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 933s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 933s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 933s 933s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 933s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 933s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 933s 933s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 933s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 933s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 933s 933s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 948s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 948s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 948s 948s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 948s || || || |||| || || || |||*|||| |||| |*|| || ||| || 948s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 948s 948s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 948s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 948s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 948s 948s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 948s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 948s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 948s 948s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 948s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 948s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 948s 948s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 948s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 948s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 948s 948s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 948s *||||| |*|||*||||| 948s Query: 955 --TACTTC-TAATTTTTCAC 971 948s 948s target_name: chr3 948s query_name: chr1 948s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 948s 948s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 948s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 948s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 948s 948s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 948s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 948s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 948s 948s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 948s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 948s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 948s 948s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 948s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 948s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 948s 948s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 948s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 948s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 948s 948s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 948s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 948s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 948s 948s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 948s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 948s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 948s 948s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 948s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 948s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 948s 948s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 948s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 949s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 949s 949s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 949s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 949s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 949s 949s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 949s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 949s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 949s 949s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 949s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 949s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 949s 949s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 949s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 949s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 949s 949s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 949s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 949s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 949s 949s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 949s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 949s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 949s 949s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 949s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 949s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 949s 949s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 949s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 949s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 949s 949s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 949s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 949s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 949s 949s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 949s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 949s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 949s 949s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 949s *|||| |*|||||*||| || |*|||*||*|| 949s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 949s 949s target_name: chr4 949s query_name: chr1 949s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 949s 949s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 949s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 949s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 949s 949s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 949s ||| || |||***||| |||| |||| |||| || ||| || 949s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 949s 949s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 949s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 949s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 949s 949s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 949s || |||| ||||||| || |*|||||*||||*|*|| 949s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 949s 949s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 949s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 949s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 949s 949s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 949s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 949s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 949s 949s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 949s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 949s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 949s 949s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 949s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 949s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 949s 949s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 949s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 949s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 949s 949s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 949s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 949s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 949s 949s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 949s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 949s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 949s 949s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 949s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 949s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 949s 949s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 949s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 949s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 949s 949s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 949s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 949s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 949s 949s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 949s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 949s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 949s 949s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 949s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 949s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 949s 949s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 949s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 949s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 949s 949s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 949s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 949s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 949s 949s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 949s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 949s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 949s 949s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 949s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 950s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 950s 950s Target: 48049 GAA---AT--AAAGTA 48059 950s ||| || ||| || 950s Query: 987 GAATGGATCCAAA-TA 1001 950s 950s target_name: chr5 950s query_name: chr1 950s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 950s 950s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 950s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 950s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 950s 950s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 950s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 950s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 950s 950s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 950s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 950s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 950s 950s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 950s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 950s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 950s 950s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 950s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 950s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 950s 950s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 950s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 950s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 950s 950s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 950s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 950s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 950s 950s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 950s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 950s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 950s 950s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 950s | |||||| ||||*|| | || | ||| |*||*||| || 950s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 950s 950s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 950s |||****| |||| |*|*|***|||*| ||*|*| ||| || 950s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 950s 950s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 950s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 950s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 950s 950s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 950s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 950s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 950s 950s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 950s | | || |||| ||||| |*|| |||| ||||*||| |||| || 950s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 950s 950s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 950s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 950s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 950s 950s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 950s ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 159.564789 seconds 950s || ||*|*||||*|| 950s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 950s 950s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 950s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 950s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 950s 950s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 950s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 950s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 950s 950s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 950s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 950s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 950s 950s Target: 9707 TGTTGATTGTTTC-CTTT 9723 950s |**|*||| |||| |||| 950s Query: 958 TTCTAATT-TTTCACTTT 974 950s 950s autopkgtest [02:15:05]: test run-example: -----------------------] 955s autopkgtest [02:15:10]: test run-example: - - - - - - - - - - results - - - - - - - - - - 955s run-example PASS 959s autopkgtest [02:15:14]: @@@@@@@@@@@@@@@@@@@@ summary 959s build-lib PASS 959s build-lib-java PASS 959s run-example PASS