0s autopkgtest [18:31:28]: starting date and time: 2026-01-22 18:31:28+0000 0s autopkgtest [18:31:28]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [18:31:28]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gsl70_90/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade lefse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/resolute/armhf 27s autopkgtest [18:31:55]: testbed dpkg architecture: armhf 29s autopkgtest [18:31:57]: testbed apt version: 3.1.12 33s autopkgtest [18:32:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 35s autopkgtest [18:32:03]: testbed release detected to be: None 43s autopkgtest [18:32:11]: updating testbed package index (apt update) 45s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 46s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 46s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 46s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 46s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 46s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 46s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 46s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 46s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [97.4 kB] 46s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [571 kB] 46s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [3644 B] 46s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 47s Get:13 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [310 kB] 47s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1402 kB] 47s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1371 kB] 47s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [14.9 MB] 47s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 50s Fetched 41.6 MB in 5s (8140 kB/s) 51s Reading package lists... 57s autopkgtest [18:32:25]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Calculating upgrade... 60s The following packages were automatically installed and are no longer required: 60s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 60s Use 'apt autoremove' to remove them. 60s The following NEW packages will be installed: 60s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 60s The following packages will be upgraded: 60s libpython3-stdlib python3 python3-gdbm python3-minimal 61s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 6219 kB of archives. 61s After this operation, 22.5 MB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.2-1 [905 kB] 61s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.2-1 [2155 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.14.2-1 [11.1 kB] 61s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.14.2-1 [28.2 kB] 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.14.2-1 [22.9 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.2-1 [2270 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.2-1 [816 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.14.2-1 [10.9 kB] 62s Fetched 6219 kB in 1s (7256 kB/s) 62s Selecting previously unselected package libpython3.14-minimal:armhf. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66485 files and directories currently installed.) 62s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking libpython3.14-minimal:armhf (3.14.2-1) ... 62s Selecting previously unselected package python3.14-minimal. 62s Preparing to unpack .../python3.14-minimal_3.14.2-1_armhf.deb ... 62s Unpacking python3.14-minimal (3.14.2-1) ... 62s Preparing to unpack .../python3-gdbm_3.14.2-1_armhf.deb ... 62s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 62s Setting up libpython3.14-minimal:armhf (3.14.2-1) ... 62s Setting up python3.14-minimal (3.14.2-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 63s Preparing to unpack .../python3-minimal_3.14.2-1_armhf.deb ... 63s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 63s Setting up python3-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66827 files and directories currently installed.) 64s Preparing to unpack .../python3_3.14.2-1_armhf.deb ... 64s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 64s Selecting previously unselected package libpython3.14-stdlib:armhf. 64s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_armhf.deb ... 64s Unpacking libpython3.14-stdlib:armhf (3.14.2-1) ... 64s Selecting previously unselected package python3.14. 64s Preparing to unpack .../python3.14_3.14.2-1_armhf.deb ... 64s Unpacking python3.14 (3.14.2-1) ... 64s Preparing to unpack .../libpython3-stdlib_3.14.2-1_armhf.deb ... 64s Unpacking libpython3-stdlib:armhf (3.14.2-1) over (3.13.7-1) ... 64s Setting up libpython3.14-stdlib:armhf (3.14.2-1) ... 64s Setting up python3.14 (3.14.2-1) ... 65s Setting up libpython3-stdlib:armhf (3.14.2-1) ... 65s Setting up python3-gdbm (3.14.2-1) ... 65s Setting up python3 (3.14.2-1) ... 65s Processing triggers for man-db (2.13.1-1) ... 66s Processing triggers for systemd (259-1ubuntu2) ... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Solving dependencies... 69s The following packages will be REMOVED: 69s libpython3.13-minimal* libpython3.13-stdlib* python3.13* python3.13-minimal* 69s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 69s After this operation, 21.3 MB disk space will be freed. 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67257 files and directories currently installed.) 69s Removing python3.13 (3.13.11-1) ... 69s Removing libpython3.13-stdlib:armhf (3.13.11-1) ... 69s Removing python3.13-minimal (3.13.11-1) ... 70s Removing libpython3.13-minimal:armhf (3.13.11-1) ... 70s Processing triggers for man-db (2.13.1-1) ... 71s Processing triggers for systemd (259-1ubuntu2) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 71s Purging configuration files for libpython3.13-minimal:armhf (3.13.11-1) ... 71s Purging configuration files for python3.13-minimal (3.13.11-1) ... 73s autopkgtest [18:32:41]: rebooting testbed after setup commands that affected boot 116s autopkgtest [18:33:24]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 142s autopkgtest [18:33:50]: @@@@@@@@@@@@@@@@@@@@ apt-source lefse 153s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (dsc) [1944 B] 153s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (tar) [64.1 kB] 153s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (diff) [12.9 kB] 153s gpgv: Signature made Wed Dec 4 19:15:55 2024 UTC 153s gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./lefse_1.1.2-2.dsc: no acceptable signature found 153s autopkgtest [18:34:01]: testing package lefse version 1.1.2-2 156s autopkgtest [18:34:04]: build not needed 158s autopkgtest [18:34:06]: test run-unit-test: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Solving dependencies... 161s The following NEW packages will be installed: 161s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 161s lefse libaec0 libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 161s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 161s libhdf5-hl-310 libice6 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 161s liblapack3 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpango-1.0-0 161s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 161s libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libsz2 libtcl8.6 libthai-data 161s libthai0 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 161s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 libxt6t64 libzopfli1 161s python-matplotlib-data python3-biom-format python3-brotli python3-click 161s python3-contourpy python3-cycler python3-decorator python3-fonttools 161s python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml python3-lz4 161s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 161s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 161s python3-pytz python3-rpy2 python3-scipy python3-sympy python3-tk 161s python3-tzlocal python3-ufolib2 python3-unicodedata2 python3-zopfli 161s python3.13-tk python3.14-tk r-base-core r-cran-codetools r-cran-coin 161s r-cran-lattice r-cran-libcoin r-cran-mass r-cran-matrix r-cran-matrixstats 161s r-cran-modeltools r-cran-multcomp r-cran-mvtnorm r-cran-sandwich 161s r-cran-survival r-cran-th.data r-cran-zoo unicode-data unzip x11-common 161s xdg-utils zip 161s 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 147 MB of archives. 161s After this operation, 459 MB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.3.5+ds-3 [141 kB] 161s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7ubuntu1 [133 kB] 161s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-11ubuntu1 [334 kB] 161s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7ubuntu1 [2090 kB] 162s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.3.5+ds-3 [4729 kB] 162s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.14.1+dfsg-2 [345 kB] 162s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8build1 [502 kB] 162s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8build1 [834 kB] 162s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.4ubuntu1 [38.2 kB] 162s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.4ubuntu1 [116 kB] 162s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.4ubuntu1 [190 kB] 162s Get:12 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.5.0~RC2-3 [171 kB] 162s Get:13 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.4-2 [21.1 kB] 162s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.4-2 [5322 B] 162s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.5+repack-4 [1422 kB] 163s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-4 [58.7 kB] 163s Get:17 http://ftpmaster.internal/ubuntu resolute/universe armhf liblzf1 armhf 3.6-4build1 [6592 B] 163s Get:18 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-h5py-serial armhf 3.15.1-4 [1562 kB] 163s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-h5py all 3.15.1-4 [11.3 kB] 163s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 163s Get:21 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytz all 2025.2-5 [32.4 kB] 163s Get:22 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-3 [7022 kB] 163s Get:23 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-3 [2948 kB] 163s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 163s Get:25 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-8 [175 kB] 163s Get:26 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.16.3-3 [18.2 MB] 164s Get:27 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biom-format armhf 2.1.17-1 [208 kB] 164s Get:28 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 164s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-11ubuntu1 [129 kB] 164s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 164s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 164s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 164s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 164s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.4-1 [175 kB] 164s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-11ubuntu1 [65.2 kB] 164s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.3.0-4 [507 kB] 164s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 164s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 164s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu3 [25.3 kB] 164s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu2 [162 kB] 164s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1build1 [16.3 kB] 164s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1build1 [189 kB] 165s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 165s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1build1 [11.7 kB] 165s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1build1 [22.4 kB] 165s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 165s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 165s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 165s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build2 [37.2 kB] 165s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 165s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build4 [6328 B] 165s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 165s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.11-1 [104 kB] 165s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.2-1 [105 kB] 165s Get:55 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-tk armhf 3.14.2-1 [11.2 kB] 165s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 12.0.0-1ubuntu1 [9168 B] 165s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.3-1 [268 kB] 165s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 165s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 165s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 165s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 165s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.5+dfsg-1 [26.1 kB] 165s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 165s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 165s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 165s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-unicodedata2 armhf 16.0.0+ds-1build1 [394 kB] 165s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3 [91.7 kB] 165s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 165s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1build1 [9543 kB] 165s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.61.1-3 [1697 kB] 166s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 166s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 166s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tzlocal all 5.3.1-2 [20.8 kB] 166s Get:74 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 166s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-29ubuntu1 [167 kB] 166s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3build1 [16.3 kB] 166s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3build1 [14.2 kB] 166s Get:78 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 166s Get:79 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 166s Get:80 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 166s Get:81 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 166s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-3 [489 kB] 166s Get:83 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.30-1 [155 kB] 166s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 166s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.30-1 [15.4 kB] 166s Get:86 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.4-1 [217 kB] 166s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.4-1 [45.3 kB] 166s Get:88 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.4-1 [25.4 kB] 166s Get:89 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1build1 [37.5 kB] 166s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 166s Get:91 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 166s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1ubuntu2 [28.5 MB] 167s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rpy2 armhf 3.6.4-2 [220 kB] 167s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 167s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 167s Get:96 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-survival armhf 3.8-3-1 [8196 kB] 168s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mvtnorm armhf 1.3-3-1 [915 kB] 168s Get:98 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-libcoin armhf 1.0-10-1 [758 kB] 168s Get:99 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrixstats armhf 1.5.0-1 [495 kB] 168s Get:100 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-modeltools all 0.2-24-1 [224 kB] 168s Get:101 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 168s Get:102 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-th.data all 1.1-5-1 [8740 kB] 169s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-zoo armhf 1.8-15-1 [1025 kB] 169s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-sandwich all 3.1-1-1 [1483 kB] 169s Get:105 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-codetools all 0.2-20-1build1 [91.1 kB] 169s Get:106 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-multcomp all 1.4-29-1 [617 kB] 169s Get:107 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-coin armhf 1.4-3-1 [1558 kB] 169s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf lefse all 1.1.2-2 [58.1 kB] 169s Preconfiguring packages ... 169s Fetched 147 MB in 8s (18.1 MB/s) 169s Selecting previously unselected package python3-numpy-dev:armhf. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66518 files and directories currently installed.) 169s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.5+ds-3_armhf.deb ... 169s Unpacking python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 169s Selecting previously unselected package libblas3:armhf. 169s Preparing to unpack .../001-libblas3_3.12.1-7ubuntu1_armhf.deb ... 169s Unpacking libblas3:armhf (3.12.1-7ubuntu1) ... 169s Selecting previously unselected package libgfortran5:armhf. 169s Preparing to unpack .../002-libgfortran5_15.2.0-11ubuntu1_armhf.deb ... 169s Unpacking libgfortran5:armhf (15.2.0-11ubuntu1) ... 169s Selecting previously unselected package liblapack3:armhf. 169s Preparing to unpack .../003-liblapack3_3.12.1-7ubuntu1_armhf.deb ... 169s Unpacking liblapack3:armhf (3.12.1-7ubuntu1) ... 170s Selecting previously unselected package python3-numpy. 170s Preparing to unpack .../004-python3-numpy_1%3a2.3.5+ds-3_armhf.deb ... 170s Unpacking python3-numpy (1:2.3.5+ds-3) ... 170s Selecting previously unselected package libfreetype6:armhf. 170s Preparing to unpack .../005-libfreetype6_2.14.1+dfsg-2_armhf.deb ... 170s Unpacking libfreetype6:armhf (2.14.1+dfsg-2) ... 170s Selecting previously unselected package fonts-dejavu-mono. 170s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8build1_all.deb ... 170s Unpacking fonts-dejavu-mono (2.37-8build1) ... 170s Selecting previously unselected package fonts-dejavu-core. 170s Preparing to unpack .../007-fonts-dejavu-core_2.37-8build1_all.deb ... 170s Unpacking fonts-dejavu-core (2.37-8build1) ... 170s Selecting previously unselected package fontconfig-config. 170s Preparing to unpack .../008-fontconfig-config_2.15.0-2.4ubuntu1_armhf.deb ... 170s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 170s Selecting previously unselected package libfontconfig1:armhf. 170s Preparing to unpack .../009-libfontconfig1_2.15.0-2.4ubuntu1_armhf.deb ... 170s Unpacking libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 170s Selecting previously unselected package fontconfig. 170s Preparing to unpack .../010-fontconfig_2.15.0-2.4ubuntu1_armhf.deb ... 170s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 170s Selecting previously unselected package fonts-lyx. 170s Preparing to unpack .../011-fonts-lyx_2.5.0~RC2-3_all.deb ... 170s Unpacking fonts-lyx (2.5.0~RC2-3) ... 170s Selecting previously unselected package libaec0:armhf. 170s Preparing to unpack .../012-libaec0_1.1.4-2_armhf.deb ... 170s Unpacking libaec0:armhf (1.1.4-2) ... 170s Selecting previously unselected package libsz2:armhf. 170s Preparing to unpack .../013-libsz2_1.1.4-2_armhf.deb ... 170s Unpacking libsz2:armhf (1.1.4-2) ... 170s Selecting previously unselected package libhdf5-310:armhf. 170s Preparing to unpack .../014-libhdf5-310_1.14.5+repack-4_armhf.deb ... 170s Unpacking libhdf5-310:armhf (1.14.5+repack-4) ... 170s Selecting previously unselected package libhdf5-hl-310:armhf. 170s Preparing to unpack .../015-libhdf5-hl-310_1.14.5+repack-4_armhf.deb ... 170s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-4) ... 171s Selecting previously unselected package liblzf1:armhf. 171s Preparing to unpack .../016-liblzf1_3.6-4build1_armhf.deb ... 171s Unpacking liblzf1:armhf (3.6-4build1) ... 171s Selecting previously unselected package python3-h5py-serial. 171s Preparing to unpack .../017-python3-h5py-serial_3.15.1-4_armhf.deb ... 171s Unpacking python3-h5py-serial (3.15.1-4) ... 171s Selecting previously unselected package python3-h5py. 171s Preparing to unpack .../018-python3-h5py_3.15.1-4_all.deb ... 171s Unpacking python3-h5py (3.15.1-4) ... 171s Selecting previously unselected package python3-click. 171s Preparing to unpack .../019-python3-click_8.2.0+0.really.8.1.8-1build1_all.deb ... 171s Unpacking python3-click (8.2.0+0.really.8.1.8-1build1) ... 171s Selecting previously unselected package python3-pytz. 171s Preparing to unpack .../020-python3-pytz_2025.2-5_all.deb ... 171s Unpacking python3-pytz (2025.2-5) ... 171s Selecting previously unselected package python3-pandas-lib:armhf. 171s Preparing to unpack .../021-python3-pandas-lib_2.3.3+dfsg-3_armhf.deb ... 171s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 171s Selecting previously unselected package python3-pandas. 171s Preparing to unpack .../022-python3-pandas_2.3.3+dfsg-3_all.deb ... 171s Unpacking python3-pandas (2.3.3+dfsg-3) ... 171s Selecting previously unselected package python3-decorator. 171s Preparing to unpack .../023-python3-decorator_5.2.1-2_all.deb ... 171s Unpacking python3-decorator (5.2.1-2) ... 171s Selecting previously unselected package libqhull-r8.0:armhf. 171s Preparing to unpack .../024-libqhull-r8.0_2020.2-8_armhf.deb ... 171s Unpacking libqhull-r8.0:armhf (2020.2-8) ... 171s Selecting previously unselected package python3-scipy. 171s Preparing to unpack .../025-python3-scipy_1.16.3-3_armhf.deb ... 171s Unpacking python3-scipy (1.16.3-3) ... 172s Selecting previously unselected package python3-biom-format. 172s Preparing to unpack .../026-python3-biom-format_2.1.17-1_armhf.deb ... 172s Unpacking python3-biom-format (2.1.17-1) ... 172s Selecting previously unselected package python-matplotlib-data. 172s Preparing to unpack .../027-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 172s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 172s Selecting previously unselected package libgomp1:armhf. 172s Preparing to unpack .../028-libgomp1_15.2.0-11ubuntu1_armhf.deb ... 172s Unpacking libgomp1:armhf (15.2.0-11ubuntu1) ... 172s Selecting previously unselected package libimagequant0:armhf. 172s Preparing to unpack .../029-libimagequant0_2.18.0-1build1_armhf.deb ... 172s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 172s Selecting previously unselected package libjpeg-turbo8:armhf. 172s Preparing to unpack .../030-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 172s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 172s Selecting previously unselected package libjpeg8:armhf. 172s Preparing to unpack .../031-libjpeg8_8c-2ubuntu11_armhf.deb ... 172s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 172s Selecting previously unselected package liblcms2-2:armhf. 172s Preparing to unpack .../032-liblcms2-2_2.17-1_armhf.deb ... 172s Unpacking liblcms2-2:armhf (2.17-1) ... 172s Selecting previously unselected package libopenjp2-7:armhf. 172s Preparing to unpack .../033-libopenjp2-7_2.5.4-1_armhf.deb ... 172s Unpacking libopenjp2-7:armhf (2.5.4-1) ... 172s Selecting previously unselected package libgraphite2-3:armhf. 172s Preparing to unpack .../034-libgraphite2-3_1.3.14-11ubuntu1_armhf.deb ... 172s Unpacking libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 172s Selecting previously unselected package libharfbuzz0b:armhf. 172s Preparing to unpack .../035-libharfbuzz0b_12.3.0-4_armhf.deb ... 172s Unpacking libharfbuzz0b:armhf (12.3.0-4) ... 172s Selecting previously unselected package libraqm0:armhf. 172s Preparing to unpack .../036-libraqm0_0.10.3-1_armhf.deb ... 172s Unpacking libraqm0:armhf (0.10.3-1) ... 172s Selecting previously unselected package libdeflate0:armhf. 172s Preparing to unpack .../037-libdeflate0_1.23-2_armhf.deb ... 172s Unpacking libdeflate0:armhf (1.23-2) ... 172s Selecting previously unselected package libjbig0:armhf. 172s Preparing to unpack .../038-libjbig0_2.1-6.1ubuntu3_armhf.deb ... 172s Unpacking libjbig0:armhf (2.1-6.1ubuntu3) ... 172s Selecting previously unselected package liblerc4:armhf. 172s Preparing to unpack .../039-liblerc4_4.0.0+ds-5ubuntu2_armhf.deb ... 172s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 172s Selecting previously unselected package libsharpyuv0:armhf. 172s Preparing to unpack .../040-libsharpyuv0_1.5.0-0.1build1_armhf.deb ... 172s Unpacking libsharpyuv0:armhf (1.5.0-0.1build1) ... 172s Selecting previously unselected package libwebp7:armhf. 173s Preparing to unpack .../041-libwebp7_1.5.0-0.1build1_armhf.deb ... 173s Unpacking libwebp7:armhf (1.5.0-0.1build1) ... 173s Selecting previously unselected package libtiff6:armhf. 173s Preparing to unpack .../042-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 173s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 173s Selecting previously unselected package libwebpdemux2:armhf. 173s Preparing to unpack .../043-libwebpdemux2_1.5.0-0.1build1_armhf.deb ... 173s Unpacking libwebpdemux2:armhf (1.5.0-0.1build1) ... 173s Selecting previously unselected package libwebpmux3:armhf. 173s Preparing to unpack .../044-libwebpmux3_1.5.0-0.1build1_armhf.deb ... 173s Unpacking libwebpmux3:armhf (1.5.0-0.1build1) ... 173s Selecting previously unselected package python3-pil:armhf. 173s Preparing to unpack .../045-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 173s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 173s Selecting previously unselected package libtcl8.6:armhf. 173s Preparing to unpack .../046-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 173s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 173s Selecting previously unselected package libxrender1:armhf. 173s Preparing to unpack .../047-libxrender1_1%3a0.9.12-1_armhf.deb ... 173s Unpacking libxrender1:armhf (1:0.9.12-1) ... 173s Selecting previously unselected package libxft2:armhf. 173s Preparing to unpack .../048-libxft2_2.3.6-1build2_armhf.deb ... 173s Unpacking libxft2:armhf (2.3.6-1build2) ... 173s Selecting previously unselected package x11-common. 173s Preparing to unpack .../049-x11-common_1%3a7.7+24ubuntu1_all.deb ... 173s Unpacking x11-common (1:7.7+24ubuntu1) ... 173s Selecting previously unselected package libxss1:armhf. 173s Preparing to unpack .../050-libxss1_1%3a1.2.3-1build4_armhf.deb ... 173s Unpacking libxss1:armhf (1:1.2.3-1build4) ... 173s Selecting previously unselected package libtk8.6:armhf. 173s Preparing to unpack .../051-libtk8.6_8.6.17-1_armhf.deb ... 173s Unpacking libtk8.6:armhf (8.6.17-1) ... 173s Selecting previously unselected package python3.13-tk. 173s Preparing to unpack .../052-python3.13-tk_3.13.11-1_armhf.deb ... 173s Unpacking python3.13-tk (3.13.11-1) ... 173s Selecting previously unselected package python3.14-tk. 173s Preparing to unpack .../053-python3.14-tk_3.14.2-1_armhf.deb ... 173s Unpacking python3.14-tk (3.14.2-1) ... 173s Selecting previously unselected package python3-tk. 173s Preparing to unpack .../054-python3-tk_3.14.2-1_armhf.deb ... 173s Unpacking python3-tk (3.14.2-1) ... 173s Selecting previously unselected package python3-pil.imagetk:armhf. 173s Preparing to unpack .../055-python3-pil.imagetk_12.0.0-1ubuntu1_armhf.deb ... 173s Unpacking python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 173s Selecting previously unselected package python3-contourpy. 173s Preparing to unpack .../056-python3-contourpy_1.3.3-1_armhf.deb ... 173s Unpacking python3-contourpy (1.3.3-1) ... 173s Selecting previously unselected package python3-cycler. 173s Preparing to unpack .../057-python3-cycler_0.12.1-2_all.deb ... 173s Unpacking python3-cycler (0.12.1-2) ... 173s Selecting previously unselected package python3-brotli. 173s Preparing to unpack .../058-python3-brotli_1.1.0-2build6_armhf.deb ... 173s Unpacking python3-brotli (1.1.0-2build6) ... 173s Selecting previously unselected package libxslt1.1:armhf. 173s Preparing to unpack .../059-libxslt1.1_1.1.43-0.3_armhf.deb ... 173s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 173s Selecting previously unselected package python3-lxml:armhf. 173s Preparing to unpack .../060-python3-lxml_6.0.2-1_armhf.deb ... 173s Unpacking python3-lxml:armhf (6.0.2-1) ... 173s Selecting previously unselected package python3-lz4. 173s Preparing to unpack .../061-python3-lz4_4.4.5+dfsg-1_armhf.deb ... 173s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 173s Selecting previously unselected package python3-mpmath. 173s Preparing to unpack .../062-python3-mpmath_1.3.0-2_all.deb ... 173s Unpacking python3-mpmath (1.3.0-2) ... 173s Selecting previously unselected package python3-sympy. 174s Preparing to unpack .../063-python3-sympy_1.14.0-2_all.deb ... 174s Unpacking python3-sympy (1.14.0-2) ... 174s Selecting previously unselected package python3-ufolib2. 174s Preparing to unpack .../064-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 174s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 174s Selecting previously unselected package python3-unicodedata2. 174s Preparing to unpack .../065-python3-unicodedata2_16.0.0+ds-1build1_armhf.deb ... 174s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 174s Selecting previously unselected package libzopfli1. 174s Preparing to unpack .../066-libzopfli1_1.0.3-3_armhf.deb ... 174s Unpacking libzopfli1 (1.0.3-3) ... 174s Selecting previously unselected package python3-zopfli. 174s Preparing to unpack .../067-python3-zopfli_0.4.0-1_armhf.deb ... 174s Unpacking python3-zopfli (0.4.0-1) ... 174s Selecting previously unselected package unicode-data. 174s Preparing to unpack .../068-unicode-data_16.0.0-1build1_all.deb ... 174s Unpacking unicode-data (16.0.0-1build1) ... 174s Selecting previously unselected package python3-fonttools. 174s Preparing to unpack .../069-python3-fonttools_4.61.1-3_armhf.deb ... 174s Unpacking python3-fonttools (4.61.1-3) ... 175s Selecting previously unselected package python3-kiwisolver. 175s Preparing to unpack .../070-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 175s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 175s Selecting previously unselected package python3-matplotlib. 175s Preparing to unpack .../071-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 175s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 175s Selecting previously unselected package python3-tzlocal. 175s Preparing to unpack .../072-python3-tzlocal_5.3.1-2_all.deb ... 175s Unpacking python3-tzlocal (5.3.1-2) ... 175s Selecting previously unselected package zip. 175s Preparing to unpack .../073-zip_3.0-15ubuntu2_armhf.deb ... 175s Unpacking zip (3.0-15ubuntu2) ... 175s Selecting previously unselected package unzip. 175s Preparing to unpack .../074-unzip_6.0-29ubuntu1_armhf.deb ... 175s Unpacking unzip (6.0-29ubuntu1) ... 175s Selecting previously unselected package libpaper2:armhf. 175s Preparing to unpack .../075-libpaper2_2.2.5-0.3build1_armhf.deb ... 175s Unpacking libpaper2:armhf (2.2.5-0.3build1) ... 175s Selecting previously unselected package libpaper-utils. 175s Preparing to unpack .../076-libpaper-utils_2.2.5-0.3build1_armhf.deb ... 175s Unpacking libpaper-utils (2.2.5-0.3build1) ... 175s Selecting previously unselected package xdg-utils. 175s Preparing to unpack .../077-xdg-utils_1.2.1-2ubuntu2_all.deb ... 175s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 175s Selecting previously unselected package libpixman-1-0:armhf. 175s Preparing to unpack .../078-libpixman-1-0_0.46.4-1_armhf.deb ... 175s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 175s Selecting previously unselected package libxcb-render0:armhf. 175s Preparing to unpack .../079-libxcb-render0_1.17.0-2build1_armhf.deb ... 175s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 175s Selecting previously unselected package libxcb-shm0:armhf. 175s Preparing to unpack .../080-libxcb-shm0_1.17.0-2build1_armhf.deb ... 175s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 175s Selecting previously unselected package libcairo2:armhf. 176s Preparing to unpack .../081-libcairo2_1.18.4-3_armhf.deb ... 176s Unpacking libcairo2:armhf (1.18.4-3) ... 176s Selecting previously unselected package libthai-data. 176s Preparing to unpack .../082-libthai-data_0.1.30-1_all.deb ... 176s Unpacking libthai-data (0.1.30-1) ... 176s Selecting previously unselected package libdatrie1:armhf. 176s Preparing to unpack .../083-libdatrie1_0.2.14-1_armhf.deb ... 176s Unpacking libdatrie1:armhf (0.2.14-1) ... 176s Selecting previously unselected package libthai0:armhf. 176s Preparing to unpack .../084-libthai0_0.1.30-1_armhf.deb ... 176s Unpacking libthai0:armhf (0.1.30-1) ... 176s Selecting previously unselected package libpango-1.0-0:armhf. 176s Preparing to unpack .../085-libpango-1.0-0_1.56.4-1_armhf.deb ... 176s Unpacking libpango-1.0-0:armhf (1.56.4-1) ... 176s Selecting previously unselected package libpangoft2-1.0-0:armhf. 176s Preparing to unpack .../086-libpangoft2-1.0-0_1.56.4-1_armhf.deb ... 176s Unpacking libpangoft2-1.0-0:armhf (1.56.4-1) ... 176s Selecting previously unselected package libpangocairo-1.0-0:armhf. 176s Preparing to unpack .../087-libpangocairo-1.0-0_1.56.4-1_armhf.deb ... 176s Unpacking libpangocairo-1.0-0:armhf (1.56.4-1) ... 176s Selecting previously unselected package libice6:armhf. 176s Preparing to unpack .../088-libice6_2%3a1.1.1-1build1_armhf.deb ... 176s Unpacking libice6:armhf (2:1.1.1-1build1) ... 176s Selecting previously unselected package libsm6:armhf. 176s Preparing to unpack .../089-libsm6_2%3a1.2.6-1_armhf.deb ... 176s Unpacking libsm6:armhf (2:1.2.6-1) ... 176s Selecting previously unselected package libxt6t64:armhf. 176s Preparing to unpack .../090-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 176s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 176s Selecting previously unselected package r-base-core. 176s Preparing to unpack .../091-r-base-core_4.5.2-1ubuntu2_armhf.deb ... 176s Unpacking r-base-core (4.5.2-1ubuntu2) ... 176s Selecting previously unselected package python3-rpy2. 176s Preparing to unpack .../092-python3-rpy2_3.6.4-2_armhf.deb ... 176s Unpacking python3-rpy2 (3.6.4-2) ... 176s Selecting previously unselected package r-cran-lattice. 176s Preparing to unpack .../093-r-cran-lattice_0.22-7-1_armhf.deb ... 176s Unpacking r-cran-lattice (0.22-7-1) ... 176s Selecting previously unselected package r-cran-matrix. 176s Preparing to unpack .../094-r-cran-matrix_1.7-4-1_armhf.deb ... 176s Unpacking r-cran-matrix (1.7-4-1) ... 177s Selecting previously unselected package r-cran-survival. 177s Preparing to unpack .../095-r-cran-survival_3.8-3-1_armhf.deb ... 177s Unpacking r-cran-survival (3.8-3-1) ... 177s Selecting previously unselected package r-cran-mvtnorm. 177s Preparing to unpack .../096-r-cran-mvtnorm_1.3-3-1_armhf.deb ... 177s Unpacking r-cran-mvtnorm (1.3-3-1) ... 177s Selecting previously unselected package r-cran-libcoin. 177s Preparing to unpack .../097-r-cran-libcoin_1.0-10-1_armhf.deb ... 177s Unpacking r-cran-libcoin (1.0-10-1) ... 177s Selecting previously unselected package r-cran-matrixstats. 177s Preparing to unpack .../098-r-cran-matrixstats_1.5.0-1_armhf.deb ... 177s Unpacking r-cran-matrixstats (1.5.0-1) ... 177s Selecting previously unselected package r-cran-modeltools. 177s Preparing to unpack .../099-r-cran-modeltools_0.2-24-1_all.deb ... 177s Unpacking r-cran-modeltools (0.2-24-1) ... 177s Selecting previously unselected package r-cran-mass. 177s Preparing to unpack .../100-r-cran-mass_7.3-65-1_armhf.deb ... 177s Unpacking r-cran-mass (7.3-65-1) ... 177s Selecting previously unselected package r-cran-th.data. 177s Preparing to unpack .../101-r-cran-th.data_1.1-5-1_all.deb ... 177s Unpacking r-cran-th.data (1.1-5-1) ... 177s Selecting previously unselected package r-cran-zoo. 177s Preparing to unpack .../102-r-cran-zoo_1.8-15-1_armhf.deb ... 177s Unpacking r-cran-zoo (1.8-15-1) ... 177s Selecting previously unselected package r-cran-sandwich. 177s Preparing to unpack .../103-r-cran-sandwich_3.1-1-1_all.deb ... 177s Unpacking r-cran-sandwich (3.1-1-1) ... 177s Selecting previously unselected package r-cran-codetools. 177s Preparing to unpack .../104-r-cran-codetools_0.2-20-1build1_all.deb ... 177s Unpacking r-cran-codetools (0.2-20-1build1) ... 177s Selecting previously unselected package r-cran-multcomp. 177s Preparing to unpack .../105-r-cran-multcomp_1.4-29-1_all.deb ... 177s Unpacking r-cran-multcomp (1.4-29-1) ... 177s Selecting previously unselected package r-cran-coin. 177s Preparing to unpack .../106-r-cran-coin_1.4-3-1_armhf.deb ... 177s Unpacking r-cran-coin (1.4-3-1) ... 177s Selecting previously unselected package lefse. 177s Preparing to unpack .../107-lefse_1.1.2-2_all.deb ... 177s Unpacking lefse (1.1.2-2) ... 177s Setting up libgraphite2-3:armhf (1.3.14-11ubuntu1) ... 177s Setting up liblcms2-2:armhf (2.17-1) ... 177s Setting up libpixman-1-0:armhf (0.46.4-1) ... 177s Setting up libsharpyuv0:armhf (1.5.0-0.1build1) ... 177s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu2) ... 177s Setting up libxrender1:armhf (1:0.9.12-1) ... 177s Setting up libdatrie1:armhf (0.2.14-1) ... 177s Setting up python3-lz4 (4.4.5+dfsg-1) ... 178s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 178s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 178s Setting up fonts-lyx (2.5.0~RC2-3) ... 178s Setting up unzip (6.0-29ubuntu1) ... 178s Setting up x11-common (1:7.7+24ubuntu1) ... 178s Setting up libdeflate0:armhf (1.23-2) ... 178s Setting up libqhull-r8.0:armhf (2020.2-8) ... 178s Setting up python3-pytz (2025.2-5) ... 178s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 178s Setting up libgomp1:armhf (15.2.0-11ubuntu1) ... 178s Setting up python3-click (8.2.0+0.really.8.1.8-1build1) ... 178s Setting up libjbig0:armhf (2.1-6.1ubuntu3) ... 178s Setting up libaec0:armhf (1.1.4-2) ... 178s Setting up unicode-data (16.0.0-1build1) ... 178s Setting up python3-decorator (5.2.1-2) ... 178s Setting up zip (3.0-15ubuntu2) ... 178s Setting up libblas3:armhf (3.12.1-7ubuntu1) ... 178s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 178s Setting up libzopfli1 (1.0.3-3) ... 178s Setting up libfreetype6:armhf (2.14.1+dfsg-2) ... 178s Setting up python3-brotli (1.1.0-2build6) ... 179s Setting up liblzf1:armhf (3.6-4build1) ... 179s Setting up python3-cycler (0.12.1-2) ... 179s Setting up libimagequant0:armhf (2.18.0-1build1) ... 179s Setting up fonts-dejavu-mono (2.37-8build1) ... 179s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 179s Setting up python3-numpy-dev:armhf (1:2.3.5+ds-3) ... 179s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 179s Setting up fonts-dejavu-core (2.37-8build1) ... 179s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 179s Setting up libgfortran5:armhf (15.2.0-11ubuntu1) ... 179s Setting up libwebp7:armhf (1.5.0-0.1build1) ... 179s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 179s Setting up libopenjp2-7:armhf (2.5.4-1) ... 179s Setting up libharfbuzz0b:armhf (12.3.0-4) ... 179s Setting up libthai-data (0.1.30-1) ... 179s Setting up libxss1:armhf (1:1.2.3-1build4) ... 179s Setting up libpaper2:armhf (2.2.5-0.3build1) ... 179s Setting up python3-mpmath (1.3.0-2) ... 180s Setting up python3-tzlocal (5.3.1-2) ... 180s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 180s Setting up libwebpmux3:armhf (1.5.0-0.1build1) ... 180s Setting up xdg-utils (1.2.1-2ubuntu2) ... 180s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 180s Setting up libsz2:armhf (1.1.4-2) ... 180s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 180s Setting up python3-sympy (1.14.0-2) ... 187s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 187s return p.returncode 187s Setting up libice6:armhf (2:1.1.1-1build1) ... 187s Setting up liblapack3:armhf (3.12.1-7ubuntu1) ... 187s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 187s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 187s Setting up libwebpdemux2:armhf (1.5.0-0.1build1) ... 187s Setting up libpaper-utils (2.2.5-0.3build1) ... 187s Setting up python3-zopfli (0.4.0-1) ... 187s Setting up libthai0:armhf (0.1.30-1) ... 187s Setting up libraqm0:armhf (0.10.3-1) ... 187s Setting up python3-numpy (1:2.3.5+ds-3) ... 190s Setting up libhdf5-310:armhf (1.14.5+repack-4) ... 190s Setting up python3-lxml:armhf (6.0.2-1) ... 190s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 190s Setting up python3-contourpy (1.3.3-1) ... 190s Setting up libfontconfig1:armhf (2.15.0-2.4ubuntu1) ... 190s Setting up libsm6:armhf (2:1.2.6-1) ... 190s Setting up libhdf5-hl-310:armhf (1.14.5+repack-4) ... 190s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 192s Regenerating fonts cache... done. 192s Setting up libxft2:armhf (2.3.6-1build2) ... 192s Setting up python3-scipy (1.16.3-3) ... 196s Setting up libtk8.6:armhf (8.6.17-1) ... 196s Setting up python3-pandas-lib:armhf (2.3.3+dfsg-3) ... 196s Setting up libpango-1.0-0:armhf (1.56.4-1) ... 196s Setting up python3-h5py-serial (3.15.1-4) ... 197s Setting up libcairo2:armhf (1.18.4-3) ... 197s Setting up python3.13-tk (3.13.11-1) ... 197s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 197s Setting up python3-pandas (2.3.3+dfsg-3) ... 203s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 203s Setting up python3-h5py (3.15.1-4) ... 203s Setting up libpangoft2-1.0-0:armhf (1.56.4-1) ... 203s Setting up libpangocairo-1.0-0:armhf (1.56.4-1) ... 203s Setting up python3.14-tk (3.14.2-1) ... 203s Setting up python3-tk (3.14.2-1) ... 203s Setting up python3-biom-format (2.1.17-1) ... 203s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:274: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option. 203s if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): 203s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:316: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 203s return [self['Signature'].replace('*','\*')] + [''] 203s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:438: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 203s argspec = argspec.replace('*','\*') 203s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:456: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 203s signature = self['Signature'].replace('*', '\*') 203s Setting up python3-pil.imagetk:armhf (12.0.0-1ubuntu1) ... 203s Setting up r-base-core (4.5.2-1ubuntu2) ... 203s Creating config file /etc/R/Renviron with new version 203s Setting up r-cran-lattice (0.22-7-1) ... 203s Setting up r-cran-modeltools (0.2-24-1) ... 203s Setting up python3-rpy2 (3.6.4-2) ... 204s Setting up r-cran-codetools (0.2-20-1build1) ... 204s Setting up r-cran-matrixstats (1.5.0-1) ... 204s Setting up r-cran-mass (7.3-65-1) ... 204s Setting up r-cran-mvtnorm (1.3-3-1) ... 204s Setting up r-cran-zoo (1.8-15-1) ... 204s Setting up r-cran-matrix (1.7-4-1) ... 204s Setting up r-cran-libcoin (1.0-10-1) ... 204s Setting up r-cran-sandwich (3.1-1-1) ... 204s Setting up r-cran-survival (3.8-3-1) ... 204s Setting up r-cran-th.data (1.1-5-1) ... 204s Setting up r-cran-multcomp (1.4-29-1) ... 204s Setting up r-cran-coin (1.4-3-1) ... 204s Setting up python3-fonttools (4.61.1-3) ... 205s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 205s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 207s Setting up lefse (1.1.2-2) ... 207s Processing triggers for libc-bin (2.42-2ubuntu4) ... 207s Processing triggers for man-db (2.13.1-1) ... 208s Processing triggers for install-info (7.2-5) ... 217s autopkgtest [18:35:05]: test run-unit-test: [----------------------- 221s lefse_run.py comparative pass 221s lefse2circlader.py comparative pass 223s lefse_plot_cladogram.py comparative fail. Instead, I get: 223s /usr/lib/python3/dist-packages/pyparsing/core.py:5637: SyntaxWarning: 'return' in a 'finally' block 223s return f"{type(self).__name__}: {retString}" 224s usage: lefse_plot_cladogram.py [-h] [--clade_sep CLADE_SEP] 224s [--max_lev MAX_LEV] 224s [--max_point_size MAX_POINT_SIZE] 224s [--min_point_size MIN_POINT_SIZE] 224s [--point_edge_width MARKEREDGEWIDTH] 224s [--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH] 224s [--parents_connector_width PARENTS_CONNECTOR_WIDTH] 224s [--radial_start_lev RADIAL_START_LEV] 224s [--labeled_start_lev LABELED_START_LEV] 224s [--labeled_stop_lev LABELED_STOP_LEV] 224s [--abrv_start_lev ABRV_START_LEV] 224s [--abrv_stop_lev ABRV_STOP_LEV] 224s [--expand_void_lev EXPAND_VOID_LEV] 224s [--class_legend_vis CLASS_LEGEND_VIS] 224s [--colored_connector COLORED_CONNECTORS] 224s [--alpha ALPHA] [--title TITLE] 224s [--sub_clade SUB_CLADE] 224s [--title_font_size TITLE_FONT_SIZE] 224s [--right_space_prop R_PROP] 224s [--left_space_prop L_PROP] 224s [--label_font_size LABEL_FONT_SIZE] 224s [--background_color {k,w}] 224s [--colored_labels {0,1}] 224s [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] 224s [--dpi DPI] [--format {png,svg,pdf}] 224s [--all_feats ALL_FEATS] 224s INPUT_FILE OUTPUT_FILE 224s 224s Cladoplot 224s 224s positional arguments: 224s INPUT_FILE tab delimited input file 224s OUTPUT_FILE the file for the output image 224s 224s options: 224s -h, --help show this help message and exit 224s --clade_sep CLADE_SEP 224s --max_lev MAX_LEV 224s --max_point_size MAX_POINT_SIZE 224s --min_point_size MIN_POINT_SIZE 224s --point_edge_width MARKEREDGEWIDTH 224s --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH 224s --parents_connector_width PARENTS_CONNECTOR_WIDTH 224s --radial_start_lev RADIAL_START_LEV 224s --labeled_start_lev LABELED_START_LEV 224s --labeled_stop_lev LABELED_STOP_LEV 224s --abrv_start_lev ABRV_START_LEV 224s --abrv_stop_lev ABRV_STOP_LEV 224s --expand_void_lev EXPAND_VOID_LEV 224s --class_legend_vis CLASS_LEGEND_VIS 224s --colored_connector COLORED_CONNECTORS 224s --alpha ALPHA 224s --title TITLE 224s --sub_clade SUB_CLADE 224s --title_font_size TITLE_FONT_SIZE 224s --right_space_prop R_PROP 224s --left_space_prop L_PROP 224s --label_font_size LABEL_FONT_SIZE 224s --background_color {k,w} 224s set the color of the background 224s --colored_labels {0,1} 224s draw the label with class color (1) or in black (0) 224s --class_legend_font_size CLASS_LEGEND_FONT_SIZE 224s --dpi DPI 224s --format {png,svg,pdf} 224s the format for the output file 224s --all_feats ALL_FEATS 225s autopkgtest [18:35:13]: test run-unit-test: -----------------------] 229s autopkgtest [18:35:17]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 229s run-unit-test FAIL non-zero exit status 1 233s autopkgtest [18:35:21]: @@@@@@@@@@@@@@@@@@@@ summary 233s run-unit-test FAIL non-zero exit status 1