0s autopkgtest [01:09:06]: starting date and time: 2025-10-20 01:09:06+0000
  0s autopkgtest [01:09:06]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message
  0s autopkgtest [01:09:06]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dzi0bktx/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:node-jquery --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- lxd -r lxd-armhf-10.145.243.254 lxd-armhf-10.145.243.254:autopkgtest/ubuntu/resolute/armhf
 20s autopkgtest [01:09:26]: testbed dpkg architecture: armhf
 22s autopkgtest [01:09:28]: testbed apt version: 3.1.6ubuntu2
 25s autopkgtest [01:09:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 27s autopkgtest [01:09:33]: testbed release detected to be: None
 34s autopkgtest [01:09:40]: updating testbed package index (apt update)
 36s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB]
 37s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [83.3 kB]
 37s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 37s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 37s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B]
 37s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB]
 37s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [450 kB]
 37s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [51.0 kB]
 37s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.4 kB]
 37s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B]
 37s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [264 kB]
 37s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [5192 B]
 37s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.1 MB]
 38s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB]
 38s Get:15 http://ftpmaster.internal/ubuntu resolute/restricted Sources [14.4 kB]
 38s Get:16 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [307 kB]
 38s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1357 kB]
 38s Get:18 http://ftpmaster.internal/ubuntu resolute/restricted armhf Packages [1672 B]
 38s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB]
 38s Get:20 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [182 kB]
 41s Fetched 40.4 MB in 5s (7807 kB/s)
 42s Reading package lists...
 48s autopkgtest [01:09:54]: upgrading testbed (apt dist-upgrade and autopurge)
 50s Reading package lists...
 50s Building dependency tree...
 50s Reading state information...
 50s Calculating upgrade...
 51s The following packages will be upgraded:
 51s   apparmor apt base-files binutils binutils-arm-linux-gnueabihf
 51s   binutils-common cloud-init cloud-init-base distro-info-data dpkg dpkg-dev
 51s   gcc-15-base gir1.2-girepository-2.0 libapparmor1 libapt-pkg7.0 libatomic1
 51s   libaudit-common libaudit1 libbinutils libcap-ng0 libctf-nobfd0 libctf0
 51s   libdpkg-perl libgcc-s1 libgirepository-1.0-1 libnewt0.52 libnftables1
 51s   libp11-kit0 libseccomp2 libsemanage-common libsemanage2 libsframe2
 51s   libstdc++6 lto-disabled-list nftables python-apt-common python3-apt
 51s   python3-cffi-backend sudo-rs whiptail
 51s 40 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 51s Need to get 11.2 MB of archives.
 51s After this operation, 574 kB of additional disk space will be used.
 51s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf base-files armhf 14ubuntu4 [75.4 kB]
 51s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libatomic1 armhf 15.2.0-5ubuntu1 [7942 B]
 51s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-base armhf 15.2.0-5ubuntu1 [58.1 kB]
 51s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-s1 armhf 15.2.0-5ubuntu1 [40.6 kB]
 51s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++6 armhf 15.2.0-5ubuntu1 [731 kB]
 52s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libapt-pkg7.0 armhf 3.1.8ubuntu1 [1148 kB]
 52s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf dpkg armhf 1.22.21ubuntu4 [1245 kB]
 52s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libseccomp2 armhf 2.6.0-2ubuntu3 [53.5 kB]
 52s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf apt armhf 3.1.8ubuntu1 [1404 kB]
 52s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libaudit-common all 1:4.0.5-1build2 [6596 B]
 52s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libcap-ng0 armhf 0.8.5-4build3 [14.0 kB]
 52s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libaudit1 armhf 1:4.0.5-1build2 [51.7 kB]
 52s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libsemanage-common all 3.8.1-1build1 [7916 B]
 52s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libsemanage2 armhf 3.8.1-1build1 [89.2 kB]
 52s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf distro-info-data all 0.68 [7378 B]
 52s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libgirepository-1.0-1 armhf 1.86.0-6 [111 kB]
 52s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf gir1.2-girepository-2.0 armhf 1.86.0-6 [25.3 kB]
 52s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libapparmor1 armhf 5.0.0~alpha1-0ubuntu8.1 [52.9 kB]
 52s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libnewt0.52 armhf 0.52.25-1ubuntu2 [39.9 kB]
 52s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libp11-kit0 armhf 0.25.9-2 [265 kB]
 52s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf python-apt-common all 3.0.0ubuntu2 [21.7 kB]
 52s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf python3-apt armhf 3.0.0ubuntu2 [189 kB]
 52s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cffi-backend armhf 1.17.1-3build1 [98.4 kB]
 52s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf sudo-rs armhf 0.2.8-1ubuntu5.1 [548 kB]
 52s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf whiptail armhf 0.52.25-1ubuntu2 [17.1 kB]
 52s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf apparmor armhf 5.0.0~alpha1-0ubuntu8.1 [631 kB]
 52s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf nftables armhf 1.1.5-2 [73.2 kB]
 52s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libnftables1 armhf 1.1.5-2 [329 kB]
 52s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libctf0 armhf 2.45-7ubuntu2 [75.7 kB]
 52s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libctf-nobfd0 armhf 2.45-7ubuntu2 [79.1 kB]
 52s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf binutils-arm-linux-gnueabihf armhf 2.45-7ubuntu2 [1022 kB]
 52s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libbinutils armhf 2.45-7ubuntu2 [411 kB]
 52s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf binutils armhf 2.45-7ubuntu2 [3240 B]
 52s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf binutils-common armhf 2.45-7ubuntu2 [220 kB]
 52s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libsframe2 armhf 2.45-7ubuntu2 [13.4 kB]
 52s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf cloud-init-base all 25.3-0ubuntu1 [625 kB]
 52s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf cloud-init all 25.3-0ubuntu1 [2106 B]
 52s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf dpkg-dev all 1.22.21ubuntu4 [1088 kB]
 52s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libdpkg-perl all 1.22.21ubuntu4 [280 kB]
 52s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf lto-disabled-list all 71 [12.5 kB]
 53s Preconfiguring packages ...
 53s Fetched 11.2 MB in 1s (9865 kB/s)
 53s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 53s Preparing to unpack .../base-files_14ubuntu4_armhf.deb ...
 53s Unpacking base-files (14ubuntu4) over (14ubuntu3) ...
 53s Setting up base-files (14ubuntu4) ...
 53s Installing new version of config file /etc/issue ...
 53s Installing new version of config file /etc/issue.net ...
 53s Installing new version of config file /etc/lsb-release ...
 54s motd-news.service is a disabled or a static unit not running, not starting it.
 54s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 54s Preparing to unpack .../libatomic1_15.2.0-5ubuntu1_armhf.deb ...
 54s Unpacking libatomic1:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
 54s Preparing to unpack .../gcc-15-base_15.2.0-5ubuntu1_armhf.deb ...
 54s Unpacking gcc-15-base:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
 54s Setting up gcc-15-base:armhf (15.2.0-5ubuntu1) ...
 54s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 54s Preparing to unpack .../libgcc-s1_15.2.0-5ubuntu1_armhf.deb ...
 54s Unpacking libgcc-s1:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
 54s Setting up libgcc-s1:armhf (15.2.0-5ubuntu1) ...
 54s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 54s Preparing to unpack .../libstdc++6_15.2.0-5ubuntu1_armhf.deb ...
 54s Unpacking libstdc++6:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
 54s Setting up libstdc++6:armhf (15.2.0-5ubuntu1) ...
 54s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 54s Preparing to unpack .../libapt-pkg7.0_3.1.8ubuntu1_armhf.deb ...
 54s Unpacking libapt-pkg7.0:armhf (3.1.8ubuntu1) over (3.1.6ubuntu2) ...
 54s Setting up libapt-pkg7.0:armhf (3.1.8ubuntu1) ...
 54s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 54s Preparing to unpack .../dpkg_1.22.21ubuntu4_armhf.deb ...
 54s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
 54s Setting up dpkg (1.22.21ubuntu4) ...
 55s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 55s Preparing to unpack .../libseccomp2_2.6.0-2ubuntu3_armhf.deb ...
 55s Unpacking libseccomp2:armhf (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ...
 55s Setting up libseccomp2:armhf (2.6.0-2ubuntu3) ...
 55s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 55s Preparing to unpack .../apt_3.1.8ubuntu1_armhf.deb ...
 55s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ...
 55s Setting up apt (3.1.8ubuntu1) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ...
 56s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ...
 56s Setting up libaudit-common (1:4.0.5-1build2) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../libcap-ng0_0.8.5-4build3_armhf.deb ...
 56s Unpacking libcap-ng0:armhf (0.8.5-4build3) over (0.8.5-4build2) ...
 56s Setting up libcap-ng0:armhf (0.8.5-4build3) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_armhf.deb ...
 56s Unpacking libaudit1:armhf (1:4.0.5-1build2) over (1:4.0.5-1build1) ...
 56s Setting up libaudit1:armhf (1:4.0.5-1build2) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../libsemanage-common_3.8.1-1build1_all.deb ...
 56s Unpacking libsemanage-common (3.8.1-1build1) over (3.8.1-1) ...
 56s Setting up libsemanage-common (3.8.1-1build1) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../libsemanage2_3.8.1-1build1_armhf.deb ...
 56s Unpacking libsemanage2:armhf (3.8.1-1build1) over (3.8.1-1) ...
 56s Setting up libsemanage2:armhf (3.8.1-1build1) ...
 56s (Reading database ... 
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(Reading database ... 61081 files and directories currently installed.)
 56s Preparing to unpack .../00-distro-info-data_0.68_all.deb ...
 56s Unpacking distro-info-data (0.68) over (0.66) ...
 56s Preparing to unpack .../01-libgirepository-1.0-1_1.86.0-6_armhf.deb ...
 56s Unpacking libgirepository-1.0-1:armhf (1.86.0-6) over (1.84.0-1) ...
 56s Preparing to unpack .../02-gir1.2-girepository-2.0_1.86.0-6_armhf.deb ...
 56s Unpacking gir1.2-girepository-2.0:armhf (1.86.0-6) over (1.84.0-1) ...
 56s Preparing to unpack .../03-libapparmor1_5.0.0~alpha1-0ubuntu8.1_armhf.deb ...
 56s Unpacking libapparmor1:armhf (5.0.0~alpha1-0ubuntu8.1) over (5.0.0~alpha1-0ubuntu8) ...
 56s Preparing to unpack .../04-libnewt0.52_0.52.25-1ubuntu2_armhf.deb ...
 56s Unpacking libnewt0.52:armhf (0.52.25-1ubuntu2) over (0.52.25-1ubuntu1) ...
 56s Preparing to unpack .../05-libp11-kit0_0.25.9-2_armhf.deb ...
 56s Unpacking libp11-kit0:armhf (0.25.9-2) over (0.25.5-3ubuntu1) ...
 56s Preparing to unpack .../06-python-apt-common_3.0.0ubuntu2_all.deb ...
 56s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ...
 56s Preparing to unpack .../07-python3-apt_3.0.0ubuntu2_armhf.deb ...
 56s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ...
 56s Preparing to unpack .../08-python3-cffi-backend_1.17.1-3build1_armhf.deb ...
 56s Unpacking python3-cffi-backend:armhf (1.17.1-3build1) over (1.17.1-3) ...
 56s Preparing to unpack .../09-sudo-rs_0.2.8-1ubuntu5.1_armhf.deb ...
 56s Unpacking sudo-rs (0.2.8-1ubuntu5.1) over (0.2.8-1ubuntu5) ...
 56s Preparing to unpack .../10-whiptail_0.52.25-1ubuntu2_armhf.deb ...
 56s Unpacking whiptail (0.52.25-1ubuntu2) over (0.52.25-1ubuntu1) ...
 56s Preparing to unpack .../11-apparmor_5.0.0~alpha1-0ubuntu8.1_armhf.deb ...
 57s Unpacking apparmor (5.0.0~alpha1-0ubuntu8.1) over (5.0.0~alpha1-0ubuntu8) ...
 58s Preparing to unpack .../12-nftables_1.1.5-2_armhf.deb ...
 58s Unpacking nftables (1.1.5-2) over (1.1.5-1) ...
 58s Preparing to unpack .../13-libnftables1_1.1.5-2_armhf.deb ...
 58s Unpacking libnftables1:armhf (1.1.5-2) over (1.1.5-1) ...
 58s Preparing to unpack .../14-libctf0_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking libctf0:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../15-libctf-nobfd0_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking libctf-nobfd0:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../16-binutils-arm-linux-gnueabihf_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking binutils-arm-linux-gnueabihf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../17-libbinutils_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking libbinutils:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../18-binutils_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking binutils (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../19-binutils-common_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking binutils-common:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../20-libsframe2_2.45-7ubuntu2_armhf.deb ...
 58s Unpacking libsframe2:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
 58s Preparing to unpack .../21-cloud-init-base_25.3-0ubuntu1_all.deb ...
 59s Unpacking cloud-init-base (25.3-0ubuntu1) over (25.3~2g890873f5-0ubuntu2) ...
 59s Preparing to unpack .../22-cloud-init_25.3-0ubuntu1_all.deb ...
 59s Unpacking cloud-init (25.3-0ubuntu1) over (25.3~2g890873f5-0ubuntu2) ...
 59s Preparing to unpack .../23-dpkg-dev_1.22.21ubuntu4_all.deb ...
 59s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
 59s Preparing to unpack .../24-libdpkg-perl_1.22.21ubuntu4_all.deb ...
 59s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
 59s Preparing to unpack .../25-lto-disabled-list_71_all.deb ...
 59s Unpacking lto-disabled-list (71) over (69) ...
 59s Setting up lto-disabled-list (71) ...
 59s Setting up libapparmor1:armhf (5.0.0~alpha1-0ubuntu8.1) ...
 59s Setting up libnewt0.52:armhf (0.52.25-1ubuntu2) ...
 59s Setting up libnftables1:armhf (1.1.5-2) ...
 59s Setting up nftables (1.1.5-2) ...
 60s Setting up distro-info-data (0.68) ...
 60s Setting up libsframe2:armhf (2.45-7ubuntu2) ...
 60s Setting up binutils-common:armhf (2.45-7ubuntu2) ...
 60s Setting up libctf-nobfd0:armhf (2.45-7ubuntu2) ...
 60s Setting up cloud-init-base (25.3-0ubuntu1) ...
 61s Setting up apparmor (5.0.0~alpha1-0ubuntu8.1) ...
 61s Installing new version of config file /etc/apparmor.d/fusermount3 ...
 61s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 61s 
 61s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 61s 
 61s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 61s 
 62s Reloading AppArmor profiles 
 62s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "balena-etcher".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 62s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 62s 
 63s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "chromium".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "bwrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Unable to replace "babeld".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "bgpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "bfdd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "alsamixer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Unable to replace "foliate".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "eigrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "dnstracer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "fabricd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "dig".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "hostname".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "iotop-c".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "fusermount3".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "Xorg".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "isisd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "gs".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ldpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "john".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "linux-boot-prober".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "irssi".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lsblk".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lsusb".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "compressor".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "locale".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "mosquitto".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Unable to replace "mbsync".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "nslookup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "nhrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "nc.openbsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "notify-send".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ospfd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "pbrd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ospf6d".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "pimd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "pim6d".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "pathd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "os-prober".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ripngd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "qpdf".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Unable to replace "ripd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ip".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "openvpn".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "proftpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "systemd-detect-virt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "staticd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tinyproxy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ssh-keyscan".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Unable to replace "mx-extract".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "rygel".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Unable to replace "/usr/sbin/chronyd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "cmds".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tnftp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "wg".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "wike".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "vrrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "who".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "dumpcap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "tshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ip".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "wg-quick".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "znc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "apt_methods".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_esm_cache".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s /sbin/apparmor_parser: Unable to replace "transmission-cli".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 63s 
 63s Error: At least one profile failed to load
 63s Setting up libp11-kit0:armhf (0.25.9-2) ...
 63s Setting up libatomic1:armhf (15.2.0-5ubuntu1) ...
 63s Setting up libdpkg-perl (1.22.21ubuntu4) ...
 63s Setting up whiptail (0.52.25-1ubuntu2) ...
 63s Setting up python-apt-common (3.0.0ubuntu2) ...
 63s Setting up libgirepository-1.0-1:armhf (1.86.0-6) ...
 63s Setting up libbinutils:armhf (2.45-7ubuntu2) ...
 63s Setting up sudo-rs (0.2.8-1ubuntu5.1) ...
 63s Setting up python3-cffi-backend:armhf (1.17.1-3build1) ...
 63s Setting up libctf0:armhf (2.45-7ubuntu2) ...
 63s Setting up cloud-init (25.3-0ubuntu1) ...
 63s Setting up python3-apt (3.0.0ubuntu2) ...
 63s Setting up gir1.2-girepository-2.0:armhf (1.86.0-6) ...
 63s Setting up binutils-arm-linux-gnueabihf (2.45-7ubuntu2) ...
 63s Setting up binutils (2.45-7ubuntu2) ...
 63s Setting up dpkg-dev (1.22.21ubuntu4) ...
 63s Processing triggers for procps (2:4.0.4-8ubuntu3) ...
 63s Processing triggers for install-info (7.1.1-1ubuntu1) ...
 63s Processing triggers for libc-bin (2.42-0ubuntu3) ...
 64s Processing triggers for rsyslog (8.2504.0-1ubuntu2) ...
 64s Processing triggers for systemd (257.9-0ubuntu2) ...
 64s Processing triggers for man-db (2.13.1-1) ...
 65s Processing triggers for plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu1) ...
 68s Reading package lists...
 69s Building dependency tree...
 69s Reading state information...
 69s Solving dependencies...
 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 71s autopkgtest [01:10:17]: rebooting testbed after setup commands that affected boot
111s autopkgtest [01:10:57]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2
135s autopkgtest [01:11:21]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps
172s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B]
172s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB]
172s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB]
172s gpgv: Signature made Mon Mar  3 06:11:14 2025 UTC
172s gpgv:                using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06
172s gpgv: Can't check signature: No public key
172s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found
176s autopkgtest [01:12:02]: testing package lammps version 20250204+dfsg.1-2
178s autopkgtest [01:12:04]: build not needed
209s autopkgtest [01:12:35]: test crack: preparing testbed
210s Reading package lists...
211s Building dependency tree...
211s Reading state information...
211s Solving dependencies...
213s The following NEW packages will be installed:
213s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono hwloc-nox lammps
213s   lammps-data libaec0 libblas3 libcairo2 libcurl3t64-gnutls libdeflate0
213s   libdouble-conversion3 libdrm-amdgpu1 libfftw3-double3 libfontconfig1
213s   libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4
213s   libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310
213s   libhdf5-hl-310 libhwloc15 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26
213s   libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm20 libmpich12
213s   libnetcdf22 libogg0 libopengl0 libpixman-1-0 libproj25 libpython3.13
213s   libsharpyuv0 libslurm42t64 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2
213s   libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libvoro++1 libvtk9.3
213s   libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0
213s   libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2
213s   libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium
213s   mpi-default-bin mpich proj-data x11-common
213s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded.
213s Need to get 105 MB of archives.
213s After this operation, 410 MB of additional disk space will be used.
213s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
213s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
213s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB]
213s Get:4 http://ftpmaster.internal/ubuntu resolute/universe armhf lammps-data all 20250204+dfsg.1-2 [10.2 MB]
214s Get:5 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
214s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-6build1 [133 kB]
214s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB]
214s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB]
214s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB]
214s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB]
214s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B]
214s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB]
214s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB]
214s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libcurl3t64-gnutls armhf 8.14.1-2ubuntu1 [352 kB]
214s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB]
214s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf libdouble-conversion3 armhf 3.3.1-1build1 [39.3 kB]
214s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-amdgpu1 armhf 2.4.125-1 [19.5 kB]
214s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-5ubuntu1 [129 kB]
214s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build2 [368 kB]
214s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libllvm20 armhf 1:20.1.8-0ubuntu4 [29.5 MB]
216s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libx11-xcb1 armhf 2:1.8.12-1build1 [7920 B]
216s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-dri3-0 armhf 1.17.0-2build1 [7350 B]
216s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-present0 armhf 1.17.0-2build1 [6094 B]
216s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-randr0 armhf 1.17.0-2build1 [16.9 kB]
216s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-sync1 armhf 1.17.0-2build1 [8852 B]
216s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-xfixes0 armhf 1.17.0-2build1 [10.2 kB]
216s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B]
216s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf mesa-libgallium armhf 25.2.3-1ubuntu1 [8778 kB]
216s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libgbm1 armhf 25.2.3-1ubuntu1 [30.0 kB]
216s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-5ubuntu1 [334 kB]
216s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libvulkan1 armhf 1.4.321.0-1 [130 kB]
216s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libgl1-mesa-dri armhf 25.2.3-1ubuntu1 [32.3 kB]
216s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libglvnd0 armhf 1.7.0-1build2 [64.7 kB]
216s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-glx0 armhf 1.17.0-2build1 [22.8 kB]
216s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B]
216s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libglx-mesa0 armhf 25.2.3-1ubuntu1 [87.2 kB]
216s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libglx0 armhf 1.7.0-1build2 [37.9 kB]
216s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libgl1 armhf 1.7.0-1build2 [103 kB]
216s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB]
216s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB]
216s Get:41 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
216s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.5+repack-3build1 [1411 kB]
216s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3build1 [58.9 kB]
216s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf libhwloc15 armhf 2.12.2-1 [149 kB]
216s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB]
216s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
216s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB]
216s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB]
216s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-6build1 [2091 kB]
216s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf libmpich12 armhf 4.3.0+really4.2.1-1build1 [1688 kB]
216s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf libnetcdf22 armhf 1:4.9.3-1build1 [511 kB]
216s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13 armhf 3.13.7-1 [2123 kB]
216s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB]
216s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB]
216s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf libopengl0 armhf 1.7.0-1build2 [36.0 kB]
216s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf proj-data all 9.6.0-1 [7955 kB]
217s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
217s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB]
217s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB]
217s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB]
217s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB]
217s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf libproj25 armhf 9.6.0-1 [1345 kB]
217s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbbbind-2-5 armhf 2022.1.0-1 [13.2 kB]
217s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbbmalloc2 armhf 2022.1.0-1 [47.4 kB]
217s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbb12 armhf 2022.1.0-1 [81.5 kB]
217s Get:66 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB]
217s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB]
217s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB]
217s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
217s Get:70 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB]
217s Get:71 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
217s Get:72 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB]
217s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu2 [21.9 MB]
218s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf liblammps0t64 armhf 20250204+dfsg.1-2 [7282 kB]
218s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf libslurm42t64 armhf 24.11.5-4 [771 kB]
218s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf hwloc-nox armhf 2.12.2-1 [215 kB]
218s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf mpich armhf 4.3.0+really4.2.1-1build1 [239 kB]
218s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf mpi-default-bin armhf 1.18 [2504 B]
218s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf lammps armhf 20250204+dfsg.1-2 [14.9 kB]
219s Fetched 105 MB in 6s (18.9 MB/s)
219s Selecting previously unselected package fonts-dejavu-mono.
219s (Reading database ... 
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(Reading database ... 61086 files and directories currently installed.)
219s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
219s Unpacking fonts-dejavu-mono (2.37-8) ...
219s Selecting previously unselected package fonts-dejavu-core.
219s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
219s Unpacking fonts-dejavu-core (2.37-8) ...
219s Selecting previously unselected package fontconfig-config.
219s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ...
220s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ...
220s Selecting previously unselected package lammps-data.
220s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ...
220s Unpacking lammps-data (20250204+dfsg.1-2) ...
220s Selecting previously unselected package libaec0:armhf.
220s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ...
220s Unpacking libaec0:armhf (1.1.3-1) ...
220s Selecting previously unselected package libblas3:armhf.
220s Preparing to unpack .../05-libblas3_3.12.1-6build1_armhf.deb ...
220s Unpacking libblas3:armhf (3.12.1-6build1) ...
220s Selecting previously unselected package libfreetype6:armhf.
220s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ...
220s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ...
220s Selecting previously unselected package libfontconfig1:armhf.
220s Preparing to unpack .../07-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ...
220s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ...
220s Selecting previously unselected package libpixman-1-0:armhf.
221s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_armhf.deb ...
221s Unpacking libpixman-1-0:armhf (0.44.0-3) ...
221s Selecting previously unselected package libxcb-render0:armhf.
221s Preparing to unpack .../09-libxcb-render0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-render0:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxcb-shm0:armhf.
221s Preparing to unpack .../10-libxcb-shm0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxrender1:armhf.
221s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_armhf.deb ...
221s Unpacking libxrender1:armhf (1:0.9.12-1) ...
221s Selecting previously unselected package libcairo2:armhf.
221s Preparing to unpack .../12-libcairo2_1.18.4-1build1_armhf.deb ...
221s Unpacking libcairo2:armhf (1.18.4-1build1) ...
221s Selecting previously unselected package libcurl3t64-gnutls:armhf.
221s Preparing to unpack .../13-libcurl3t64-gnutls_8.14.1-2ubuntu1_armhf.deb ...
221s Unpacking libcurl3t64-gnutls:armhf (8.14.1-2ubuntu1) ...
221s Selecting previously unselected package libdeflate0:armhf.
221s Preparing to unpack .../14-libdeflate0_1.23-2_armhf.deb ...
221s Unpacking libdeflate0:armhf (1.23-2) ...
221s Selecting previously unselected package libdouble-conversion3:armhf.
221s Preparing to unpack .../15-libdouble-conversion3_3.3.1-1build1_armhf.deb ...
221s Unpacking libdouble-conversion3:armhf (3.3.1-1build1) ...
221s Selecting previously unselected package libdrm-amdgpu1:armhf.
221s Preparing to unpack .../16-libdrm-amdgpu1_2.4.125-1_armhf.deb ...
221s Unpacking libdrm-amdgpu1:armhf (2.4.125-1) ...
221s Selecting previously unselected package libgomp1:armhf.
221s Preparing to unpack .../17-libgomp1_15.2.0-5ubuntu1_armhf.deb ...
221s Unpacking libgomp1:armhf (15.2.0-5ubuntu1) ...
221s Selecting previously unselected package libfftw3-double3:armhf.
221s Preparing to unpack .../18-libfftw3-double3_3.3.10-2fakesync1build2_armhf.deb ...
221s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build2) ...
221s Selecting previously unselected package libllvm20:armhf.
221s Preparing to unpack .../19-libllvm20_1%3a20.1.8-0ubuntu4_armhf.deb ...
221s Unpacking libllvm20:armhf (1:20.1.8-0ubuntu4) ...
221s Selecting previously unselected package libx11-xcb1:armhf.
221s Preparing to unpack .../20-libx11-xcb1_2%3a1.8.12-1build1_armhf.deb ...
221s Unpacking libx11-xcb1:armhf (2:1.8.12-1build1) ...
221s Selecting previously unselected package libxcb-dri3-0:armhf.
221s Preparing to unpack .../21-libxcb-dri3-0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-dri3-0:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxcb-present0:armhf.
221s Preparing to unpack .../22-libxcb-present0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-present0:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxcb-randr0:armhf.
221s Preparing to unpack .../23-libxcb-randr0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-randr0:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxcb-sync1:armhf.
221s Preparing to unpack .../24-libxcb-sync1_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-sync1:armhf (1.17.0-2build1) ...
221s Selecting previously unselected package libxcb-xfixes0:armhf.
221s Preparing to unpack .../25-libxcb-xfixes0_1.17.0-2build1_armhf.deb ...
221s Unpacking libxcb-xfixes0:armhf (1.17.0-2build1) ...
222s Selecting previously unselected package libxshmfence1:armhf.
222s Preparing to unpack .../26-libxshmfence1_1.3.3-1_armhf.deb ...
222s Unpacking libxshmfence1:armhf (1.3.3-1) ...
222s Selecting previously unselected package mesa-libgallium:armhf.
222s Preparing to unpack .../27-mesa-libgallium_25.2.3-1ubuntu1_armhf.deb ...
222s Unpacking mesa-libgallium:armhf (25.2.3-1ubuntu1) ...
222s Selecting previously unselected package libgbm1:armhf.
222s Preparing to unpack .../28-libgbm1_25.2.3-1ubuntu1_armhf.deb ...
222s Unpacking libgbm1:armhf (25.2.3-1ubuntu1) ...
222s Selecting previously unselected package libgfortran5:armhf.
222s Preparing to unpack .../29-libgfortran5_15.2.0-5ubuntu1_armhf.deb ...
222s Unpacking libgfortran5:armhf (15.2.0-5ubuntu1) ...
222s Selecting previously unselected package libvulkan1:armhf.
222s Preparing to unpack .../30-libvulkan1_1.4.321.0-1_armhf.deb ...
222s Unpacking libvulkan1:armhf (1.4.321.0-1) ...
222s Selecting previously unselected package libgl1-mesa-dri:armhf.
222s Preparing to unpack .../31-libgl1-mesa-dri_25.2.3-1ubuntu1_armhf.deb ...
222s Unpacking libgl1-mesa-dri:armhf (25.2.3-1ubuntu1) ...
222s Selecting previously unselected package libglvnd0:armhf.
222s Preparing to unpack .../32-libglvnd0_1.7.0-1build2_armhf.deb ...
222s Unpacking libglvnd0:armhf (1.7.0-1build2) ...
222s Selecting previously unselected package libxcb-glx0:armhf.
222s Preparing to unpack .../33-libxcb-glx0_1.17.0-2build1_armhf.deb ...
222s Unpacking libxcb-glx0:armhf (1.17.0-2build1) ...
222s Selecting previously unselected package libxxf86vm1:armhf.
222s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ...
222s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ...
222s Selecting previously unselected package libglx-mesa0:armhf.
222s Preparing to unpack .../35-libglx-mesa0_25.2.3-1ubuntu1_armhf.deb ...
222s Unpacking libglx-mesa0:armhf (25.2.3-1ubuntu1) ...
222s Selecting previously unselected package libglx0:armhf.
222s Preparing to unpack .../36-libglx0_1.7.0-1build2_armhf.deb ...
222s Unpacking libglx0:armhf (1.7.0-1build2) ...
222s Selecting previously unselected package libgl1:armhf.
222s Preparing to unpack .../37-libgl1_1.7.0-1build2_armhf.deb ...
222s Unpacking libgl1:armhf (1.7.0-1build2) ...
222s Selecting previously unselected package libgl2ps1.4.
222s Preparing to unpack .../38-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ...
222s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
222s Selecting previously unselected package libglew2.2:armhf.
222s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_armhf.deb ...
222s Unpacking libglew2.2:armhf (2.2.0-4build1) ...
222s Selecting previously unselected package libsz2:armhf.
222s Preparing to unpack .../40-libsz2_1.1.3-1_armhf.deb ...
222s Unpacking libsz2:armhf (1.1.3-1) ...
222s Selecting previously unselected package libhdf5-310:armhf.
222s Preparing to unpack .../41-libhdf5-310_1.14.5+repack-3build1_armhf.deb ...
222s Unpacking libhdf5-310:armhf (1.14.5+repack-3build1) ...
222s Selecting previously unselected package libhdf5-hl-310:armhf.
222s Preparing to unpack .../42-libhdf5-hl-310_1.14.5+repack-3build1_armhf.deb ...
222s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3build1) ...
222s Selecting previously unselected package libhwloc15:armhf.
222s Preparing to unpack .../43-libhwloc15_2.12.2-1_armhf.deb ...
222s Unpacking libhwloc15:armhf (2.12.2-1) ...
222s Selecting previously unselected package libjpeg-turbo8:armhf.
222s Preparing to unpack .../44-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ...
222s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ...
222s Selecting previously unselected package libjpeg8:armhf.
222s Preparing to unpack .../45-libjpeg8_8c-2ubuntu11_armhf.deb ...
222s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
222s Selecting previously unselected package libjsoncpp26:armhf.
222s Preparing to unpack .../46-libjsoncpp26_1.9.6-3_armhf.deb ...
222s Unpacking libjsoncpp26:armhf (1.9.6-3) ...
222s Selecting previously unselected package libkim-api2:armhf.
222s Preparing to unpack .../47-libkim-api2_2.3.0-1ubuntu1_armhf.deb ...
223s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ...
223s Selecting previously unselected package liblapack3:armhf.
223s Preparing to unpack .../48-liblapack3_3.12.1-6build1_armhf.deb ...
223s Unpacking liblapack3:armhf (3.12.1-6build1) ...
223s Selecting previously unselected package libmpich12:armhf.
223s Preparing to unpack .../49-libmpich12_4.3.0+really4.2.1-1build1_armhf.deb ...
223s Unpacking libmpich12:armhf (4.3.0+really4.2.1-1build1) ...
223s Selecting previously unselected package libnetcdf22:armhf.
223s Preparing to unpack .../50-libnetcdf22_1%3a4.9.3-1build1_armhf.deb ...
223s Unpacking libnetcdf22:armhf (1:4.9.3-1build1) ...
223s Selecting previously unselected package libpython3.13:armhf.
223s Preparing to unpack .../51-libpython3.13_3.13.7-1_armhf.deb ...
223s Unpacking libpython3.13:armhf (3.13.7-1) ...
223s Selecting previously unselected package libvoro++1.
223s Preparing to unpack .../52-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ...
223s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ...
223s Selecting previously unselected package libogg0:armhf.
223s Preparing to unpack .../53-libogg0_1.3.5-3build1_armhf.deb ...
223s Unpacking libogg0:armhf (1.3.5-3build1) ...
223s Selecting previously unselected package libopengl0:armhf.
223s Preparing to unpack .../54-libopengl0_1.7.0-1build2_armhf.deb ...
223s Unpacking libopengl0:armhf (1.7.0-1build2) ...
223s Selecting previously unselected package proj-data.
223s Preparing to unpack .../55-proj-data_9.6.0-1_all.deb ...
223s Unpacking proj-data (9.6.0-1) ...
223s Selecting previously unselected package libjbig0:armhf.
223s Preparing to unpack .../56-libjbig0_2.1-6.1ubuntu2_armhf.deb ...
223s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ...
223s Selecting previously unselected package liblerc4:armhf.
223s Preparing to unpack .../57-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ...
223s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ...
223s Selecting previously unselected package libsharpyuv0:armhf.
223s Preparing to unpack .../58-libsharpyuv0_1.5.0-0.1_armhf.deb ...
223s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ...
223s Selecting previously unselected package libwebp7:armhf.
223s Preparing to unpack .../59-libwebp7_1.5.0-0.1_armhf.deb ...
223s Unpacking libwebp7:armhf (1.5.0-0.1) ...
223s Selecting previously unselected package libtiff6:armhf.
223s Preparing to unpack .../60-libtiff6_4.7.0-3ubuntu3_armhf.deb ...
223s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ...
223s Selecting previously unselected package libproj25:armhf.
223s Preparing to unpack .../61-libproj25_9.6.0-1_armhf.deb ...
223s Unpacking libproj25:armhf (9.6.0-1) ...
223s Selecting previously unselected package libtbbbind-2-5:armhf.
223s Preparing to unpack .../62-libtbbbind-2-5_2022.1.0-1_armhf.deb ...
223s Unpacking libtbbbind-2-5:armhf (2022.1.0-1) ...
223s Selecting previously unselected package libtbbmalloc2:armhf.
223s Preparing to unpack .../63-libtbbmalloc2_2022.1.0-1_armhf.deb ...
223s Unpacking libtbbmalloc2:armhf (2022.1.0-1) ...
223s Selecting previously unselected package libtbb12:armhf.
223s Preparing to unpack .../64-libtbb12_2022.1.0-1_armhf.deb ...
223s Unpacking libtbb12:armhf (2022.1.0-1) ...
223s Selecting previously unselected package libtcl8.6:armhf.
223s Preparing to unpack .../65-libtcl8.6_8.6.17+dfsg-1_armhf.deb ...
223s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ...
223s Selecting previously unselected package libtheoradec1:armhf.
223s Preparing to unpack .../66-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ...
223s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ...
223s Selecting previously unselected package libtheoraenc1:armhf.
224s Preparing to unpack .../67-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb ...
224s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ...
224s Selecting previously unselected package libxft2:armhf.
224s Preparing to unpack .../68-libxft2_2.3.6-1build1_armhf.deb ...
224s Unpacking libxft2:armhf (2.3.6-1build1) ...
224s Selecting previously unselected package x11-common.
224s Preparing to unpack .../69-x11-common_1%3a7.7+24ubuntu1_all.deb ...
224s Unpacking x11-common (1:7.7+24ubuntu1) ...
224s Selecting previously unselected package libxss1:armhf.
224s Preparing to unpack .../70-libxss1_1%3a1.2.3-1build3_armhf.deb ...
224s Unpacking libxss1:armhf (1:1.2.3-1build3) ...
224s Selecting previously unselected package libtk8.6:armhf.
224s Preparing to unpack .../71-libtk8.6_8.6.17-1_armhf.deb ...
224s Unpacking libtk8.6:armhf (8.6.17-1) ...
224s Selecting previously unselected package libvtk9.3:armhf.
224s Preparing to unpack .../72-libvtk9.3_9.3.0+dfsg1-4ubuntu2_armhf.deb ...
224s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu2) ...
224s Selecting previously unselected package liblammps0t64:armhf.
224s Preparing to unpack .../73-liblammps0t64_20250204+dfsg.1-2_armhf.deb ...
224s Unpacking liblammps0t64:armhf (20250204+dfsg.1-2) ...
225s Selecting previously unselected package libslurm42t64.
225s Preparing to unpack .../74-libslurm42t64_24.11.5-4_armhf.deb ...
225s Unpacking libslurm42t64 (24.11.5-4) ...
225s Selecting previously unselected package hwloc-nox.
225s Preparing to unpack .../75-hwloc-nox_2.12.2-1_armhf.deb ...
225s Unpacking hwloc-nox (2.12.2-1) ...
225s Selecting previously unselected package mpich.
225s Preparing to unpack .../76-mpich_4.3.0+really4.2.1-1build1_armhf.deb ...
225s Unpacking mpich (4.3.0+really4.2.1-1build1) ...
225s Selecting previously unselected package mpi-default-bin.
225s Preparing to unpack .../77-mpi-default-bin_1.18_armhf.deb ...
225s Unpacking mpi-default-bin (1.18) ...
225s Selecting previously unselected package lammps.
225s Preparing to unpack .../78-lammps_20250204+dfsg.1-2_armhf.deb ...
225s Unpacking lammps (20250204+dfsg.1-2) ...
225s Setting up libpython3.13:armhf (3.13.7-1) ...
225s Setting up libxcb-dri3-0:armhf (1.17.0-2build1) ...
225s Setting up libtbbmalloc2:armhf (2022.1.0-1) ...
225s Setting up libpixman-1-0:armhf (0.44.0-3) ...
225s Setting up libsharpyuv0:armhf (1.5.0-0.1) ...
225s Setting up libx11-xcb1:armhf (2:1.8.12-1build1) ...
225s Setting up libdouble-conversion3:armhf (3.3.1-1build1) ...
225s Setting up libxcb-xfixes0:armhf (1.17.0-2build1) ...
225s Setting up libogg0:armhf (1.3.5-3build1) ...
225s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ...
225s Setting up proj-data (9.6.0-1) ...
225s Setting up libxrender1:armhf (1:0.9.12-1) ...
225s Setting up lammps-data (20250204+dfsg.1-2) ...
225s Setting up libxcb-render0:armhf (1.17.0-2build1) ...
225s Setting up libglvnd0:armhf (1.7.0-1build2) ...
225s Setting up libxcb-glx0:armhf (1.17.0-2build1) ...
225s Setting up x11-common (1:7.7+24ubuntu1) ...
225s Setting up libdeflate0:armhf (1.23-2) ...
225s Setting up libcurl3t64-gnutls:armhf (8.14.1-2ubuntu1) ...
225s Setting up libxcb-shm0:armhf (1.17.0-2build1) ...
225s Setting up libgomp1:armhf (15.2.0-5ubuntu1) ...
225s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ...
225s Setting up libaec0:armhf (1.1.3-1) ...
225s Setting up libopengl0:armhf (1.7.0-1build2) ...
225s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ...
225s Setting up libxcb-present0:armhf (1.17.0-2build1) ...
225s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ...
225s Setting up libblas3:armhf (3.12.1-6build1) ...
225s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
225s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ...
225s Setting up libxcb-sync1:armhf (1.17.0-2build1) ...
225s Setting up libjsoncpp26:armhf (1.9.6-3) ...
225s Setting up libslurm42t64 (24.11.5-4) ...
225s Setting up fonts-dejavu-mono (2.37-8) ...
225s Setting up libhwloc15:armhf (2.12.2-1) ...
225s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ...
225s Setting up libllvm20:armhf (1:20.1.8-0ubuntu4) ...
225s Setting up fonts-dejavu-core (2.37-8) ...
225s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ...
225s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build2) ...
225s Setting up libgfortran5:armhf (15.2.0-5ubuntu1) ...
225s Setting up libvulkan1:armhf (1.4.321.0-1) ...
225s Setting up libwebp7:armhf (1.5.0-0.1) ...
225s Setting up libmpich12:armhf (4.3.0+really4.2.1-1build1) ...
225s Setting up libxshmfence1:armhf (1.3.3-1) ...
225s Setting up libxcb-randr0:armhf (1.17.0-2build1) ...
225s Setting up libxss1:armhf (1:1.2.3-1build3) ...
225s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ...
225s Setting up libsz2:armhf (1.1.3-1) ...
225s Setting up libdrm-amdgpu1:armhf (2.4.125-1) ...
225s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
225s Setting up mesa-libgallium:armhf (25.2.3-1ubuntu1) ...
225s Setting up liblapack3:armhf (3.12.1-6build1) ...
225s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
225s Setting up libgbm1:armhf (25.2.3-1ubuntu1) ...
225s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
225s Setting up libgl1-mesa-dri:armhf (25.2.3-1ubuntu1) ...
225s Setting up hwloc-nox (2.12.2-1) ...
225s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ...
225s Setting up libtbbbind-2-5:armhf (2022.1.0-1) ...
225s Setting up libhdf5-310:armhf (1.14.5+repack-3build1) ...
225s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ...
225s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ...
225s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3build1) ...
225s Setting up libxft2:armhf (2.3.6-1build1) ...
225s Setting up libglx-mesa0:armhf (25.2.3-1ubuntu1) ...
225s Setting up libglx0:armhf (1.7.0-1build2) ...
225s Setting up libproj25:armhf (9.6.0-1) ...
225s Setting up mpich (4.3.0+really4.2.1-1build1) ...
225s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode
225s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
225s Setting up libtk8.6:armhf (8.6.17-1) ...
225s Setting up libnetcdf22:armhf (1:4.9.3-1build1) ...
225s Setting up mpi-default-bin (1.18) ...
225s Setting up libtbb12:armhf (2022.1.0-1) ...
225s Setting up libcairo2:armhf (1.18.4-1build1) ...
225s Setting up libgl1:armhf (1.7.0-1build2) ...
225s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ...
225s Setting up libglew2.2:armhf (2.2.0-4build1) ...
225s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
225s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu2) ...
225s Setting up liblammps0t64:armhf (20250204+dfsg.1-2) ...
225s Setting up lammps (20250204+dfsg.1-2) ...
225s Processing triggers for man-db (2.13.1-1) ...
226s Processing triggers for libc-bin (2.42-0ubuntu3) ...
234s autopkgtest [01:13:00]: test crack: [-----------------------
236s LAMMPS (4 Feb 2025)
236s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
236s   using 1 OpenMP thread(s) per MPI task
236s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771
236s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928)
236s   2 by 1 by 1 MPI processor grid
236s Created 8141 atoms
236s   using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928)
236s   create_atoms CPU = 0.001 seconds
236s 302 atoms in group lower
236s 302 atoms in group upper
236s 604 atoms in group boundary
236s 7537 atoms in group mobile
236s 841 atoms in group leftupper
236s 841 atoms in group leftlower
236s Setting atom values ...
236s   841 settings made for type
236s Setting atom values ...
236s   841 settings made for type
236s Setting atom values ...
236s   302 settings made for type
236s Setting atom values ...
236s   302 settings made for type
236s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
236s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule
236s Neighbor list info ...
236s   update: every = 1 steps, delay = 5 steps, check = yes
236s   max neighbors/atom: 2000, page size: 100000
236s   master list distance cutoff = 2.8
236s   ghost atom cutoff = 2.8
236s   binsize = 1.4, bins = 80 56 1
236s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
236s   (1) pair lj/cut, perpetual
236s       attributes: half, newton on
236s       pair build: half/bin/atomonly/newton
236s       stencil: half/bin/2d
236s       bin: standard
236s Setting up Verlet run ...
236s   Unit style    : lj
236s   Current step  : 0
236s   Time step     : 0.003
236s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes
236s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
236s          0   0.065993465   -3.2595015      0             -3.1984123     -0.035939913    8605.5917    
236s        200   0.060035253   -3.2531886      0             -3.1976149     -0.22757684     8638.5331    
236s        400   0.06054278    -3.2510706      0             -3.1950271     -0.42811733     8677.8288    
236s        600   0.060576995   -3.246816       0             -3.1907408     -0.60017647     8717.6131    
237s        800   0.060802753   -3.2413477      0             -3.1850635     -0.74499308     8756.4512    
237s       1000   0.061812114   -3.2349942      0             -3.1777756     -0.87130079     8796.9575    
237s       1200   0.06317147    -3.2277552      0             -3.1692783     -0.98010628     8823.1488    
237s       1400   0.065125405   -3.2198031      0             -3.1595175     -1.0690179      8858.8358    
237s       1600   0.06725411    -3.2111272      0             -3.148871      -1.1440993      8892.6607    
237s       1800   0.069389572   -3.2019689      0             -3.137736      -1.199078       8933.7591    
237s       2000   0.071276448   -3.1921621      0             -3.1261826     -1.239553       8969.0463    
237s       2200   0.073243486   -3.1818809      0             -3.1140805     -1.264839       8997.6559    
238s       2400   0.075063494   -3.1711703      0             -3.1016851     -1.2772278      9038.4932    
238s       2600   0.076789207   -3.1600658      0             -3.0889832     -1.2754953      9073.4997    
238s       2800   0.07875979    -3.1487143      0             -3.0758075     -1.2637926      9106.2245    
238s       3000   0.080591853   -3.1372361      0             -3.0626334     -1.2388824      9142.7862    
238s       3200   0.08227693    -3.125423       0             -3.0492605     -1.2055283      9169.4322    
238s       3400   0.084289444   -3.1136554      0             -3.03563       -1.1672422      9204.8205    
238s       3600   0.086720297   -3.1021183      0             -3.0218427     -1.126381       9233.2656    
239s       3800   0.089264018   -3.0909262      0             -3.0082959     -1.0899774      9265.4143    
239s       4000   0.091377688   -3.0795096      0             -2.9949227     -1.0580229      9297.6799    
239s       4200   0.092665135   -3.0678736      0             -2.9820949     -1.0390124      9331.6135    
239s       4400   0.09055434    -3.0560482      0             -2.9722234     -1.0323741      9362.2075    
239s       4600   0.088763719   -3.0446018      0             -2.9624346     -1.027693       9391.6949    
239s       4800   0.089467982   -3.0337452      0             -2.950926      -1.0232092      9427.4155    
239s       5000   0.089910902   -3.0237571      0             -2.9405279     -1.0174796      9452.031     
239s Loop time of 3.25934 on 2 procs for 5000 steps with 8141 atoms
239s 
239s Performance: 397626.633 tau/day, 1534.053 timesteps/s, 12.489 Matom-step/s
239s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads
239s 
239s MPI task timing breakdown:
239s Section |  min time  |  avg time  |  max time  |%varavg| %total
239s ---------------------------------------------------------------
239s Pair    | 2.6094     | 2.6203     | 2.6312     |   0.7 | 80.39
239s Neigh   | 0.12364    | 0.12612    | 0.1286     |   0.7 |  3.87
239s Comm    | 0.12829    | 0.14892    | 0.16954    |   5.3 |  4.57
239s Output  | 0.0011674  | 0.0017436  | 0.0023197  |   1.4 |  0.05
239s Modify  | 0.23423    | 0.23738    | 0.24054    |   0.6 |  7.28
239s Other   |            | 0.1249     |            |       |  3.83
239s 
239s Nlocal:         4070.5 ave        4085 max        4056 min
239s Histogram: 1 0 0 0 0 0 0 0 0 1
239s Nghost:            207 ave         208 max         206 min
239s Histogram: 1 0 0 0 0 0 0 0 0 1
239s Neighs:          35700 ave       35927 max       35473 min
239s Histogram: 1 0 0 0 0 0 0 0 0 1
239s 
239s Total # of neighbors = 71400
239s Ave neighs/atom = 8.7704213
239s Neighbor list builds = 106
239s Dangerous builds = 0
239s Total wall time: 0:00:03
239s LAMMPS (4 Feb 2025)
239s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
239s   using 1 OpenMP thread(s) per MPI task
239s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771
239s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928)
239s   1 by 1 by 1 MPI processor grid
239s Created 8141 atoms
239s   using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928)
239s   create_atoms CPU = 0.001 seconds
239s 302 atoms in group lower
239s 302 atoms in group upper
239s 604 atoms in group boundary
239s 7537 atoms in group mobile
239s 841 atoms in group leftupper
239s 841 atoms in group leftlower
239s Setting atom values ...
239s   841 settings made for type
239s Setting atom values ...
239s   841 settings made for type
239s Setting atom values ...
239s   302 settings made for type
239s Setting atom values ...
239s   302 settings made for type
239s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
239s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule
239s Neighbor list info ...
239s   update: every = 1 steps, delay = 5 steps, check = yes
239s   max neighbors/atom: 2000, page size: 100000
239s   master list distance cutoff = 2.8
239s   ghost atom cutoff = 2.8
239s   binsize = 1.4, bins = 80 56 1
239s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
239s   (1) pair lj/cut, perpetual
239s       attributes: half, newton on
239s       pair build: half/bin/atomonly/newton
239s       stencil: half/bin/2d
239s       bin: standard
239s Setting up Verlet run ...
239s   Unit style    : lj
239s   Current step  : 0
239s   Time step     : 0.003
239s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes
239s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
239s          0   0.065651733   -3.2595015      0             -3.1987287     -0.036239172    8605.5917    
240s        200   0.060086376   -3.2531936      0             -3.1975725     -0.23125026     8638.8101    
240s        400   0.060533553   -3.2509973      0             -3.1949623     -0.4305406      8679.2464    
240s        600   0.06082965    -3.2466949      0             -3.1903858     -0.6028531      8716.7569    
240s        800   0.061677224   -3.2413215      0             -3.1842278     -0.7482749      8756.226     
241s       1000   0.062383731   -3.2349273      0             -3.1771796     -0.87425132     8793.1116    
241s       1200   0.063709246   -3.2276094      0             -3.1686347     -0.98020161     8828.8863    
241s       1400   0.065404552   -3.2196608      0             -3.1591168     -1.0695384      8866.4893    
241s       1600   0.067579602   -3.2110378      0             -3.1484804     -1.1456387      8900.6772    
242s       1800   0.069324241   -3.2018536      0             -3.1376812     -1.2020999      8933.017     
242s       2000   0.071014927   -3.1921108      0             -3.1263733     -1.2430105      8963.9853    
242s       2200   0.072992881   -3.1818701      0             -3.1143017     -1.2701297      9004.4136    
243s       2400   0.075000723   -3.1712313      0             -3.1018043     -1.2830866      9034.9991    
243s       2600   0.076843477   -3.1601004      0             -3.0889675     -1.27924        9072.1325    
243s       2800   0.078671706   -3.1487747      0             -3.0759495     -1.2659604      9103.9526    
243s       3000   0.080713586   -3.1373277      0             -3.0626123     -1.2440673      9134.552     
244s       3200   0.08309469    -3.1260242      0             -3.0491047     -1.214547       9169.0003    
244s       3400   0.085424766   -3.1146623      0             -3.0355859     -1.1839326      9206.909     
244s       3600   0.087396485   -3.1029493      0             -3.0220477     -1.143412       9233.783     
245s       3800   0.089007987   -3.090822       0             -3.0084286     -1.1000791      9259.0348    
245s       4000   0.089813071   -3.0794078      0             -2.9962692     -1.062847       9281.82      
245s       4200   0.08584753    -3.0668559      0             -2.9873882     -1.037972       9308.8113    
245s       4400   0.086197517   -3.0559678      0             -2.9761761     -1.028843       9328.9666    
246s       4600   0.086766447   -3.0437627      0             -2.9634443     -1.0208785      9361.9925    
246s       4800   0.088195149   -3.0328502      0             -2.9512093     -1.0272063      9395.6122    
246s       5000   0.089415266   -3.0228825      0             -2.9401122     -1.0215336      9436.1637    
246s Loop time of 6.7708 on 1 procs for 5000 steps with 8141 atoms
246s 
246s Performance: 191410.198 tau/day, 738.465 timesteps/s, 6.012 Matom-step/s
246s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads
246s 
246s MPI task timing breakdown:
246s Section |  min time  |  avg time  |  max time  |%varavg| %total
246s ---------------------------------------------------------------
246s Pair    | 5.6441     | 5.6441     | 5.6441     |   0.0 | 83.36
246s Neigh   | 0.24426    | 0.24426    | 0.24426    |   0.0 |  3.61
246s Comm    | 0.028038   | 0.028038   | 0.028038   |   0.0 |  0.41
246s Output  | 0.0042749  | 0.0042749  | 0.0042749  |   0.0 |  0.06
246s Modify  | 0.57483    | 0.57483    | 0.57483    |   0.0 |  8.49
246s Other   |            | 0.2753     |            |       |  4.07
246s 
246s Nlocal:           8141 ave        8141 max        8141 min
246s Histogram: 1 0 0 0 0 0 0 0 0 0
246s Nghost:              0 ave           0 max           0 min
246s Histogram: 1 0 0 0 0 0 0 0 0 0
246s Neighs:          71389 ave       71389 max       71389 min
246s Histogram: 1 0 0 0 0 0 0 0 0 0
246s 
246s Total # of neighbors = 71389
246s Ave neighs/atom = 8.7690701
246s Neighbor list builds = 100
246s Dangerous builds = 0
246s Total wall time: 0:00:06
246s run: OK
247s autopkgtest [01:13:13]: test crack: -----------------------]
250s autopkgtest [01:13:16]: test crack:  - - - - - - - - - - results - - - - - - - - - -
250s crack                PASS
254s autopkgtest [01:13:20]: test dipole: preparing testbed
256s Reading package lists...
256s Building dependency tree...
256s Reading state information...
256s Solving dependencies...
257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
264s autopkgtest [01:13:30]: test dipole: [-----------------------
266s LAMMPS (4 Feb 2025)
266s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
266s   using 1 OpenMP thread(s) per MPI task
266s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132)
266s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085
266s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425)
266s   2 by 1 by 1 MPI processor grid
266s Created 200 atoms
266s   using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425)
266s   create_atoms CPU = 0.001 seconds
266s Setting atom values ...
266s   200 settings made for mass
266s Setting atom values ...
266s   200 settings made for dipole/random
266s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
266s Neighbor list info ...
266s   update: every = 1 steps, delay = 0 steps, check = yes
266s   max neighbors/atom: 2000, page size: 100000
266s   master list distance cutoff = 2.8
266s   ghost atom cutoff = 2.8
266s   binsize = 1.4, bins = 13 13 2
266s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
266s   (1) pair lj/cut/dipole/cut, perpetual
266s       attributes: half, newton on
266s       pair build: half/bin/atomonly/newton
266s       stencil: half/bin/2d
266s       bin: standard
266s Setting up Verlet run ...
266s   Unit style    : lj
266s   Current step  : 0
266s   Time step     : 0.005
266s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes
266s    Step          Temp          E_pair         c_erot         TotEng         Press     
266s          0   0             -2.0965715      0             -2.0965715     -2.4759659    
266s        500   0.37155664    -2.7150631      0.22689419    -2.3453642     -0.33510922   
266s       1000   0.42354552    -2.749888       0.21162528    -2.3284602     -0.11120147   
266s       1500   0.39778312    -2.7597475      0.24737266    -2.3639533     -0.33856087   
267s       2000   0.44906427    -2.8037479      0.24422576    -2.356929       0.15010432   
267s       2500   0.46058471    -2.8143585      0.25012657    -2.3560767     -0.38282545   
267s       3000   0.47344306    -2.8070454      0.22839921    -2.3359696      0.0086809905 
267s       3500   0.40527008    -2.7047531      0.20199859    -2.3015094      0.28576366   
267s       4000   0.45532509    -2.7724376      0.22443356    -2.3193892     -0.026546855  
267s       4500   0.43501879    -2.7267497      0.20510275    -2.293906      -0.063127027  
267s       5000   0.42443514    -2.745851       0.24060818    -2.3235381     -0.025742709  
267s       5500   0.3839334     -2.7073937      0.24270814    -2.32538       -0.07170774   
267s       6000   0.42922278    -2.7478329      0.25153908    -2.3207562     -0.47398846   
267s       6500   0.45362461    -2.7967795      0.2756071     -2.345423       0.064335127  
267s       7000   0.426427      -2.7100719      0.21223279    -2.2857771      0.23817765   
267s       7500   0.44329907    -2.7592192      0.25431233    -2.3181366     -0.48160925   
267s       8000   0.45710982    -2.746352       0.23112717    -2.2915277      0.067805988  
267s       8500   0.45706146    -2.7008059      0.20546196    -2.2460298     -0.11582213   
267s       9000   0.46491089    -2.7354016      0.23514028    -2.2728153     -0.25398947   
267s       9500   0.44183004    -2.6848933      0.22534954    -2.2452724     -0.047314023  
267s      10000   0.42741048    -2.7131911      0.27211413    -2.2879177      0.12679961   
267s Loop time of 0.898516 on 2 procs for 10000 steps with 200 atoms
267s 
267s Performance: 4807926.481 tau/day, 11129.459 timesteps/s, 2.226 Matom-step/s
267s 95.9% CPU use with 2 MPI tasks x 1 OpenMP threads
267s 
267s MPI task timing breakdown:
267s Section |  min time  |  avg time  |  max time  |%varavg| %total
267s ---------------------------------------------------------------
267s Pair    | 0.34122    | 0.37489    | 0.40857    |   5.5 | 41.72
267s Neigh   | 0.017056   | 0.018241   | 0.019426   |   0.9 |  2.03
267s Comm    | 0.3556     | 0.39168    | 0.42776    |   5.8 | 43.59
267s Output  | 0.0017295  | 0.0022507  | 0.0027719  |   1.1 |  0.25
267s Modify  | 0.034246   | 0.036865   | 0.039485   |   1.4 |  4.10
267s Other   |            | 0.07458    |            |       |  8.30
267s 
267s Nlocal:            100 ave         106 max          94 min
267s Histogram: 1 0 0 0 0 0 0 0 0 1
267s Nghost:          118.5 ave         120 max         117 min
267s Histogram: 1 0 0 0 0 0 0 0 0 1
267s Neighs:          827.5 ave         911 max         744 min
267s Histogram: 1 0 0 0 0 0 0 0 0 1
267s 
267s Total # of neighbors = 1655
267s Ave neighs/atom = 8.275
267s Neighbor list builds = 692
267s Dangerous builds = 0
267s Total wall time: 0:00:00
267s LAMMPS (4 Feb 2025)
267s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
267s   using 1 OpenMP thread(s) per MPI task
267s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132)
267s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085
267s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425)
267s   1 by 1 by 1 MPI processor grid
267s Created 200 atoms
267s   using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425)
267s   create_atoms CPU = 0.001 seconds
267s Setting atom values ...
267s   200 settings made for mass
267s Setting atom values ...
267s   200 settings made for dipole/random
267s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
267s Neighbor list info ...
267s   update: every = 1 steps, delay = 0 steps, check = yes
267s   max neighbors/atom: 2000, page size: 100000
267s   master list distance cutoff = 2.8
267s   ghost atom cutoff = 2.8
267s   binsize = 1.4, bins = 13 13 2
267s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
267s   (1) pair lj/cut/dipole/cut, perpetual
267s       attributes: half, newton on
267s       pair build: half/bin/atomonly/newton
267s       stencil: half/bin/2d
267s       bin: standard
267s Setting up Verlet run ...
267s   Unit style    : lj
267s   Current step  : 0
267s   Time step     : 0.005
267s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes
267s    Step          Temp          E_pair         c_erot         TotEng         Press     
267s          0   0             -2.0965715      0             -2.0965715     -2.4759659    
267s        500   0.37155664    -2.7150631      0.22689419    -2.3453642     -0.33510922   
267s       1000   0.42354552    -2.749888       0.21162528    -2.3284602     -0.11120147   
268s       1500   0.39778312    -2.7597475      0.24737266    -2.3639533     -0.33856086   
268s       2000   0.44906527    -2.8037488      0.24422567    -2.3569289      0.15010101   
268s       2500   0.46052127    -2.8142136      0.25010172    -2.355995      -0.38222495   
268s       3000   0.48349143    -2.8019094      0.21892648    -2.3208354     -0.021940474  
268s       3500   0.42818128    -2.7407155      0.22510159    -2.3146751     -0.01916692   
268s       4000   0.43447865    -2.7251092      0.21179003    -2.292803      -0.054070562  
268s       4500   0.49679675    -2.7760513      0.19789317    -2.2817386     -0.01374163   
268s       5000   0.45369814    -2.7436186      0.22108827    -2.2921889      0.032452862  
268s       5500   0.49381571    -2.8052843      0.24840557    -2.3139377     -0.011483656  
268s       6000   0.47486262    -2.762914       0.230038      -2.2904257      0.35084172   
268s       6500   0.47834729    -2.7628296      0.23242786    -2.286874      -0.084199114  
268s       7000   0.4554671     -2.7485479      0.25152556    -2.2953581     -0.41657484   
268s       7500   0.48688446    -2.7468396      0.22672266    -2.2623895      0.19798746   
268s       8000   0.42093195    -2.6889197      0.24972685    -2.2700924     -0.048022487  
268s       8500   0.44505913    -2.65779        0.18787506    -2.2149561      0.23409841   
268s       9000   0.48102255    -2.7186808      0.22041232    -2.2400634      0.26761374   
268s       9500   0.41955498    -2.688272       0.26237731    -2.2708148      0.1556688    
268s      10000   0.47397757    -2.683164       0.2078595     -2.2115563     -0.21881739   
268s Loop time of 0.94514 on 1 procs for 10000 steps with 200 atoms
268s 
268s Performance: 4570752.361 tau/day, 10580.445 timesteps/s, 2.116 Matom-step/s
268s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads
268s 
268s MPI task timing breakdown:
268s Section |  min time  |  avg time  |  max time  |%varavg| %total
268s ---------------------------------------------------------------
268s Pair    | 0.7423     | 0.7423     | 0.7423     |   0.0 | 78.54
268s Neigh   | 0.033578   | 0.033578   | 0.033578   |   0.0 |  3.55
268s Comm    | 0.051403   | 0.051403   | 0.051403   |   0.0 |  5.44
268s Output  | 0.0019858  | 0.0019858  | 0.0019858  |   0.0 |  0.21
268s Modify  | 0.063817   | 0.063817   | 0.063817   |   0.0 |  6.75
268s Other   |            | 0.05206    |            |       |  5.51
268s 
268s Nlocal:            200 ave         200 max         200 min
268s Histogram: 1 0 0 0 0 0 0 0 0 0
268s Nghost:            166 ave         166 max         166 min
268s Histogram: 1 0 0 0 0 0 0 0 0 0
268s Neighs:           1624 ave        1624 max        1624 min
268s Histogram: 1 0 0 0 0 0 0 0 0 0
268s 
268s Total # of neighbors = 1624
268s Ave neighs/atom = 8.12
268s Neighbor list builds = 703
268s Dangerous builds = 0
268s Total wall time: 0:00:00
268s run: OK
269s autopkgtest [01:13:35]: test dipole: -----------------------]
272s dipole               PASS
272s autopkgtest [01:13:38]: test dipole:  - - - - - - - - - - results - - - - - - - - - -
276s autopkgtest [01:13:42]: test ellipse: preparing testbed
278s Reading package lists...
278s Building dependency tree...
278s Reading state information...
279s Solving dependencies...
279s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
288s autopkgtest [01:13:54]: test ellipse: [-----------------------
290s LAMMPS (4 Feb 2025)
290s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
290s   using 1 OpenMP thread(s) per MPI task
290s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678
290s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
290s   2 by 1 by 1 MPI processor grid
290s Created 400 atoms
290s   using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
290s   create_atoms CPU = 0.000 seconds
290s Setting atom values ...
290s   29 settings made for type/fraction
290s Setting atom values ...
290s   371 settings made for mass
290s Setting atom values ...
290s   29 settings made for mass
290s Setting atom values ...
290s   371 settings made for shape
290s Setting atom values ...
290s   29 settings made for shape
290s Setting atom values ...
290s   400 settings made for quat/random
290s 371 atoms in group spheroid
290s 
290s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE
290s 
290s Your simulation uses code contributions which should be cited:
290s - pair gayberne command: doi:10.1063/1.3058435
290s The log file lists these citations in BibTeX format.
290s 
290s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE
290s 
290s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
290s Neighbor list info ...
290s   update: every = 1 steps, delay = 0 steps, check = yes
290s   max neighbors/atom: 2000, page size: 100000
290s   master list distance cutoff = 4.8
290s   ghost atom cutoff = 4.8
290s   binsize = 2.4, bins = 59 59 3
290s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
290s   (1) pair gayberne, perpetual
290s       attributes: half, newton on
290s       pair build: half/bin/atomonly/newton
290s       stencil: half/bin/2d
290s       bin: standard
290s Setting up Verlet run ...
290s   Unit style    : lj
290s   Current step  : 0
290s   Time step     : 0.002
290s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes
290s    Step         c_rot          E_pair         TotEng         Press          Volume    
290s          0   2.3158404      0              2.394          0.04788        20000        
290s        100   1.7101139      0              1.7678302      0.034413192    20548.286    
290s        200   2.3115592      0              2.3895743      0.04649702     20556.796    
290s        300   1.831333       0              1.8931405      0.041256922    18354.646    
290s        400   2.1838099     -0.00017499954  2.2573384      0.066506278    13574.023    
290s        500   1.9604824     -0.024753591    2.0018228      0.09726581     8392.5882    
290s        600   1.983652      -0.13957983     1.858954       0.28044314     4590.4733    
290s        700   2.0349282     -0.7537042      1.2545559      0.45904399     2452.437     
290s        800   2.1883376     -1.7033514      0.37402366     1.4284826      1377.0458    
290s        900   1.8893439     -3.2012297     -1.3190748      3.1235376      889.49388    
290s       1000   1.5818588     -4.6980931     -3.1320854      3.6494701      700.71079    
290s       1100   1.743968      -5.3117051     -3.573368       1.7907876      666.1204     
290s       1200   2.1788951     -5.0690852     -2.8893841      1.0317884      697.08645    
290s       1300   2.0067166     -4.6588703     -2.6387448     -0.19855863     763.72651    
290s       1400   2.1020191     -4.2786372     -2.1756186      0.5410189      815.37712    
290s       1500   1.805494      -4.1713612     -2.3732785      0.88817983     855.41486    
290s       1600   2.1414975     -3.9792878     -1.8690882      0.79530678     899.00645    
290s       1700   1.9971755     -3.8166601     -1.8380659      0.41343091     945.60821    
290s       1800   2.0033499     -3.7524192     -1.7481879      0.76104973     973.71402    
290s       1900   2.0083456     -3.7603247     -1.7442111      0.74095064     988.03964    
290s       2000   1.952518      -3.6531717     -1.7078818      0.50248125     989.96894    
290s Loop time of 0.410011 on 2 procs for 2000 steps with 400 atoms
290s 
290s Performance: 842903.839 tau/day, 4877.916 timesteps/s, 1.951 Matom-step/s
290s 96.5% CPU use with 2 MPI tasks x 1 OpenMP threads
290s 
290s MPI task timing breakdown:
290s Section |  min time  |  avg time  |  max time  |%varavg| %total
290s ---------------------------------------------------------------
290s Pair    | 0.19344    | 0.21827    | 0.2431     |   5.3 | 53.24
290s Neigh   | 0.011259   | 0.011273   | 0.011288   |   0.0 |  2.75
290s Comm    | 0.029927   | 0.054889   | 0.079851   |  10.7 | 13.39
290s Output  | 0.017433   | 0.017806   | 0.018179   |   0.3 |  4.34
290s Modify  | 0.095543   | 0.095758   | 0.095973   |   0.1 | 23.36
290s Other   |            | 0.01201    |            |       |  2.93
290s 
290s Nlocal:            200 ave         211 max         189 min
290s Histogram: 1 0 0 0 0 0 0 0 0 1
290s Nghost:            215 ave         217 max         213 min
290s Histogram: 1 0 0 0 0 0 0 0 0 1
290s Neighs:           1561 ave        1651 max        1471 min
290s Histogram: 1 0 0 0 0 0 0 0 0 1
290s 
290s Total # of neighbors = 3122
290s Ave neighs/atom = 7.805
290s Neighbor list builds = 346
290s Dangerous builds = 0
290s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
290s Setting up Verlet run ...
290s   Unit style    : lj
290s   Current step  : 2000
290s   Time step     : 0.002
290s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes
290s    Step         c_rot          E_pair         TotEng         Press          Volume    
290s       2000   1.952518      -3.6531717     -1.7078818      0.50248125     989.96894    
290s       2100   1.9040485     -3.6005672     -1.6802923      0.39862443     989.96894    
290s       2200   1.8951971     -3.5921565     -1.6947175      1.0260215      989.96894    
290s       2300   2.0029243     -3.7081933     -1.6838652      0.66970186     989.96894    
290s       2400   2.027189      -3.7314224     -1.7100024      0.89700378     989.96894    
290s       2500   2.0661215     -3.7753463     -1.702413       0.57671879     989.96894    
290s       2600   2.0610733     -3.7707904     -1.7111988      0.90914683     989.96894    
290s       2700   2.0505106     -3.7599067     -1.7337499      0.65660966     989.96894    
291s       2800   2.1106444     -3.8219338     -1.7370714      0.55276913     989.96894    
291s       2900   2.0347978     -3.7428385     -1.7135242      0.69752989     989.96894    
291s       3000   2.0331089     -3.7397511     -1.7515341      0.052123917    989.96894    
291s       3100   1.9983479     -3.7074978     -1.7158075      0.7551458      989.96894    
291s       3200   2.1299896     -3.8449355     -1.7171591      1.055861       989.96894    
291s       3300   2.079427      -3.7934717     -1.684941       1.1625179      989.96894    
291s       3400   2.1499496     -3.8651326     -1.703348       0.58109397     989.96894    
291s       3500   2.0901278     -3.8054829     -1.699465       1.0231781      989.96894    
291s       3600   2.1041735     -3.8168043     -1.6893938      1.0813513      989.96894    
291s       3700   2.0650932     -3.7777761     -1.7224926      1.3120953      989.96894    
291s       3800   2.0166275     -3.7282861     -1.7416258      0.78824642     989.96894    
291s       3900   2.0726099     -3.7842546     -1.7339991      0.92130013     989.96894    
291s       4000   2.1298275     -3.8450909     -1.7237177      0.95785441     989.96894    
291s Loop time of 0.401504 on 2 procs for 2000 steps with 400 atoms
291s 
291s Performance: 860764.286 tau/day, 4981.275 timesteps/s, 1.993 Matom-step/s
291s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads
291s 
291s MPI task timing breakdown:
291s Section |  min time  |  avg time  |  max time  |%varavg| %total
291s ---------------------------------------------------------------
291s Pair    | 0.28221    | 0.28292    | 0.28362    |   0.1 | 70.46
291s Neigh   | 0.0028657  | 0.0032144  | 0.0035632  |   0.6 |  0.80
291s Comm    | 0.040967   | 0.041555   | 0.042143   |   0.3 | 10.35
291s Output  | 0.014457   | 0.014754   | 0.015052   |   0.2 |  3.67
291s Modify  | 0.04082    | 0.044769   | 0.048718   |   1.9 | 11.15
291s Other   |            | 0.01429    |            |       |  3.56
291s 
291s Nlocal:            200 ave         228 max         172 min
291s Histogram: 1 0 0 0 0 0 0 0 0 1
291s Nghost:            209 ave         215 max         203 min
291s Histogram: 1 0 0 0 0 0 0 0 0 1
291s Neighs:         1639.5 ave        1963 max        1316 min
291s Histogram: 1 0 0 0 0 0 0 0 0 1
291s 
291s Total # of neighbors = 3279
291s Ave neighs/atom = 8.1975
291s Neighbor list builds = 50
291s Dangerous builds = 0
291s Total wall time: 0:00:00
291s LAMMPS (4 Feb 2025)
291s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
291s   using 1 OpenMP thread(s) per MPI task
291s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678
291s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
291s   1 by 1 by 1 MPI processor grid
291s Created 400 atoms
291s   using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
291s   create_atoms CPU = 0.001 seconds
291s Setting atom values ...
291s   29 settings made for type/fraction
291s Setting atom values ...
291s   371 settings made for mass
291s Setting atom values ...
291s   29 settings made for mass
291s Setting atom values ...
291s   371 settings made for shape
291s Setting atom values ...
291s   29 settings made for shape
291s Setting atom values ...
291s   400 settings made for quat/random
291s 371 atoms in group spheroid
291s 
291s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE
291s 
291s Your simulation uses code contributions which should be cited:
291s - pair gayberne command: doi:10.1063/1.3058435
291s The log file lists these citations in BibTeX format.
291s 
291s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE
291s 
291s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
291s Neighbor list info ...
291s   update: every = 1 steps, delay = 0 steps, check = yes
291s   max neighbors/atom: 2000, page size: 100000
291s   master list distance cutoff = 4.8
291s   ghost atom cutoff = 4.8
291s   binsize = 2.4, bins = 59 59 3
291s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
291s   (1) pair gayberne, perpetual
291s       attributes: half, newton on
291s       pair build: half/bin/atomonly/newton
291s       stencil: half/bin/2d
291s       bin: standard
291s Setting up Verlet run ...
291s   Unit style    : lj
291s   Current step  : 0
291s   Time step     : 0.002
291s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes
291s    Step         c_rot          E_pair         TotEng         Press          Volume    
291s          0   2.3158404      0              2.394          0.04788        20000        
291s        100   1.7101139      0              1.7678302      0.034413192    20548.286    
291s        200   2.3115592      0              2.3895743      0.04649702     20556.796    
291s        300   1.831333       0              1.8931405      0.041256922    18354.646    
291s        400   2.1838099     -0.00017499954  2.2573384      0.066506278    13574.023    
291s        500   1.9604824     -0.024753591    2.0018228      0.09726581     8392.5882    
291s        600   1.983652      -0.13957983     1.858954       0.28044314     4590.4733    
291s        700   2.0349282     -0.7537042      1.2545559      0.45904399     2452.437     
291s        800   2.1883376     -1.7033514      0.37402366     1.4284826      1377.0458    
291s        900   1.8893439     -3.2012297     -1.3190748      3.1235376      889.49388    
291s       1000   1.5818588     -4.6980931     -3.1320854      3.6494701      700.71079    
291s       1100   1.743968      -5.3117051     -3.573368       1.7907876      666.1204     
291s       1200   2.1788951     -5.0690852     -2.8893841      1.0317884      697.08645    
291s       1300   2.0067166     -4.6588703     -2.6387448     -0.19855863     763.72651    
291s       1400   2.1020191     -4.2786372     -2.1756186      0.5410189      815.37712    
291s       1500   1.805494      -4.1713612     -2.3732785      0.88817983     855.41486    
291s       1600   2.1414975     -3.9792878     -1.8690882      0.79530678     899.00645    
292s       1700   1.9971755     -3.8166601     -1.8380659      0.41343091     945.60821    
292s       1800   2.0033499     -3.7524192     -1.7481879      0.76104973     973.71402    
292s       1900   2.0083456     -3.7603247     -1.7442111      0.74095064     988.03964    
292s       2000   1.952518      -3.6531717     -1.7078818      0.50248126     989.96894    
292s Loop time of 0.66966 on 1 procs for 2000 steps with 400 atoms
292s 
292s Performance: 516082.932 tau/day, 2986.591 timesteps/s, 1.195 Matom-step/s
292s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads
292s 
292s MPI task timing breakdown:
292s Section |  min time  |  avg time  |  max time  |%varavg| %total
292s ---------------------------------------------------------------
292s Pair    | 0.4404     | 0.4404     | 0.4404     |   0.0 | 65.76
292s Neigh   | 0.022147   | 0.022147   | 0.022147   |   0.0 |  3.31
292s Comm    | 0.015259   | 0.015259   | 0.015259   |   0.0 |  2.28
292s Output  | 0.025671   | 0.025671   | 0.025671   |   0.0 |  3.83
292s Modify  | 0.15477    | 0.15477    | 0.15477    |   0.0 | 23.11
292s Other   |            | 0.01142    |            |       |  1.70
292s 
292s Nlocal:            400 ave         400 max         400 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s Nghost:            276 ave         276 max         276 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s Neighs:           3122 ave        3122 max        3122 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s 
292s Total # of neighbors = 3122
292s Ave neighs/atom = 7.805
292s Neighbor list builds = 346
292s Dangerous builds = 0
292s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
292s Setting up Verlet run ...
292s   Unit style    : lj
292s   Current step  : 2000
292s   Time step     : 0.002
292s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes
292s    Step         c_rot          E_pair         TotEng         Press          Volume    
292s       2000   1.952518      -3.6531717     -1.7078818      0.50248126     989.96894    
292s       2100   1.9040485     -3.6005672     -1.6802923      0.39862445     989.96894    
292s       2200   1.895197      -3.5921565     -1.6947175      1.0260215      989.96894    
292s       2300   2.0029243     -3.7081933     -1.6838652      0.66970181     989.96894    
292s       2400   2.027189      -3.7314224     -1.7100024      0.89700379     989.96894    
292s       2500   2.0661215     -3.7753462     -1.702413       0.57671817     989.96894    
292s       2600   2.0610736     -3.7707907     -1.7111987      0.90914701     989.96894    
292s       2700   2.0505116     -3.7599078     -1.7337505      0.65660586     989.96894    
292s       2800   2.1106432     -3.8219326     -1.7370705      0.55276071     989.96894    
292s       2900   2.0347944     -3.7428349     -1.7135244      0.69753379     989.96894    
292s       3000   2.033092      -3.739734      -1.7515318      0.05219688     989.96894    
292s       3100   1.9983562     -3.707508      -1.7158135      0.75509883     989.96894    
292s       3200   2.1298063     -3.8447512     -1.7171502      1.0568228      989.96894    
292s       3300   2.0791428     -3.7931834     -1.6847086      1.1627829      989.96894    
292s       3400   2.1498359     -3.8650337     -1.7032074      0.58032554     989.96894    
292s       3500   2.0904809     -3.805739      -1.6981978      1.0208226      989.96894    
292s       3600   2.1048714     -3.8174009     -1.691117       1.0550021      989.96894    
292s       3700   2.0745341     -3.7874614     -1.7155849      1.3035756      989.96894    
292s       3800   2.0439729     -3.7569157     -1.7364298      0.76483567     989.96894    
292s       3900   2.0498921     -3.7613373     -1.7218798      1.0164212      989.96894    
292s       4000   2.0584264     -3.7719072     -1.7005071      0.89500692     989.96894    
292s Loop time of 0.726302 on 1 procs for 2000 steps with 400 atoms
292s 
292s Performance: 475835.371 tau/day, 2753.677 timesteps/s, 1.101 Matom-step/s
292s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads
292s 
292s MPI task timing breakdown:
292s Section |  min time  |  avg time  |  max time  |%varavg| %total
292s ---------------------------------------------------------------
292s Pair    | 0.57809    | 0.57809    | 0.57809    |   0.0 | 79.59
292s Neigh   | 0.0064022  | 0.0064022  | 0.0064022  |   0.0 |  0.88
292s Comm    | 0.015761   | 0.015761   | 0.015761   |   0.0 |  2.17
292s Output  | 0.025588   | 0.025588   | 0.025588   |   0.0 |  3.52
292s Modify  | 0.089682   | 0.089682   | 0.089682   |   0.0 | 12.35
292s Other   |            | 0.01078    |            |       |  1.48
292s 
292s Nlocal:            400 ave         400 max         400 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s Nghost:            284 ave         284 max         284 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s Neighs:           3286 ave        3286 max        3286 min
292s Histogram: 1 0 0 0 0 0 0 0 0 0
292s 
292s Total # of neighbors = 3286
292s Ave neighs/atom = 8.215
292s Neighbor list builds = 50
292s Dangerous builds = 0
292s Total wall time: 0:00:01
292s LAMMPS (4 Feb 2025)
292s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
292s   using 1 OpenMP thread(s) per MPI task
292s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678
292s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
292s   2 by 1 by 1 MPI processor grid
292s Created 400 atoms
292s   using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
292s   create_atoms CPU = 0.001 seconds
292s Setting atom values ...
292s   29 settings made for type/fraction
292s Setting atom values ...
292s   371 settings made for mass
292s Setting atom values ...
292s   29 settings made for mass
292s Setting atom values ...
292s   371 settings made for shape
292s Setting atom values ...
292s   29 settings made for shape
292s Setting atom values ...
292s   400 settings made for quat/random
292s 371 atoms in group spheroid
292s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
292s Neighbor list info ...
292s   update: every = 1 steps, delay = 0 steps, check = yes
292s   max neighbors/atom: 2000, page size: 100000
292s   master list distance cutoff = 4.8
292s   ghost atom cutoff = 4.8
292s   binsize = 2.4, bins = 59 59 3
292s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
292s   (1) pair resquared, perpetual
292s       attributes: half, newton on
292s       pair build: half/bin/atomonly/newton
292s       stencil: half/bin/2d
292s       bin: standard
292s Setting up Verlet run ...
292s   Unit style    : lj
292s   Current step  : 0
292s   Time step     : 0.002
292s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes
292s    Step         c_rot          E_pair         TotEng         Press          Volume    
292s          0   2.3158404      0              2.394          0.04788        20000        
292s        100   1.7101139      0              1.7678302      0.034413192    20548.286    
292s        200   2.3115592      0              2.3895743      0.04649702     20556.796    
292s        300   1.831333       0              1.8931405      0.041256922    18354.646    
293s        400   2.1837684     -8.9738883e-06  2.2574616      0.066522186    13574.035    
293s        500   1.9709471      0.0022832653   2.017568       0.098398099    8395.6884    
293s        600   2.1312025      0.15575534     2.2465639      0.43878461     4664.4094    
293s        700   1.9768729      0.20704026     2.1544534      0.85727857     2661.7782    
293s        800   1.8049358      0.20410493     1.965827       1.2647972      1769.9195    
293s        900   1.8115555      0.2163004      1.9984639      1.6554526      1443.3838    
293s       1000   1.9171641      0.2328859      2.1621182      1.7795638      1436.7766    
293s       1100   1.9523886      0.09158383     2.0589755      0.91188602     1668.1861    
293s       1200   2.0844678      0.062228051    2.0997798      0.63282414     2088.0586    
293s       1300   1.9225253      0.052820284    1.9484124      0.44379326     2643.4175    
293s       1400   2.1265088      0.033305088    2.1345672      0.34979266     3172.6223    
293s       1500   1.9551661      0.053995306    2.0077177      0.34810901     3444.8372    
293s       1600   2.15222        0.057084004    2.1910214      0.39212275     3290.66      
293s       1700   2.0126393      0.092807299    2.0739086      0.53567035     2812.2166    
293s       1800   2.1109716      0.18678852     2.2572287      1.0092292      2267.5536    
293s       1900   1.9107655      0.26801333     2.1635401      1.5374301      1862.3897    
293s       2000   1.9034522      0.24431156     2.1576939      1.5998792      1639.6982    
293s Loop time of 0.690158 on 2 procs for 2000 steps with 400 atoms
293s 
293s Performance: 500754.766 tau/day, 2897.886 timesteps/s, 1.159 Matom-step/s
293s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads
293s 
293s MPI task timing breakdown:
293s Section |  min time  |  avg time  |  max time  |%varavg| %total
293s ---------------------------------------------------------------
293s Pair    | 0.45862    | 0.46701    | 0.47539    |   1.2 | 67.67
293s Neigh   | 0.011564   | 0.011853   | 0.012141   |   0.3 |  1.72
293s Comm    | 0.059314   | 0.067283   | 0.075252   |   3.1 |  9.75
293s Output  | 0.016442   | 0.016846   | 0.01725    |   0.3 |  2.44
293s Modify  | 0.11142    | 0.11186    | 0.11229    |   0.1 | 16.21
293s Other   |            | 0.01531    |            |       |  2.22
293s 
293s Nlocal:            200 ave         210 max         190 min
293s Histogram: 1 0 0 0 0 0 0 0 0 1
293s Nghost:            164 ave         168 max         160 min
293s Histogram: 1 0 0 0 0 0 0 0 0 1
293s Neighs:            910 ave         958 max         862 min
293s Histogram: 1 0 0 0 0 0 0 0 0 1
293s 
293s Total # of neighbors = 1820
293s Ave neighs/atom = 4.55
293s Neighbor list builds = 420
293s Dangerous builds = 0
293s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
293s Setting up Verlet run ...
293s   Unit style    : lj
293s   Current step  : 2000
293s   Time step     : 0.002
293s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes
293s    Step         c_rot          E_pair         TotEng         Press          Volume    
293s       2000   1.9034522      0.24431156     2.1576939      1.5998792      1639.6982    
293s       2100   1.9990056      0.14555548     2.132148       1.1813518      1639.6982    
293s       2200   1.9913934      0.15343329     2.1279388      1.2079524      1639.6982    
293s       2300   1.9931915      0.15156716     2.1646511      1.1963228      1639.6982    
293s       2400   1.9969018      0.14779678     2.1413044      1.1999441      1639.6982    
293s       2500   1.9401284      0.20640998     2.168038       1.4643778      1639.6982    
293s       2600   1.9492999      0.19710633     2.136292       1.3812079      1639.6982    
294s       2700   2.0106221      0.13364603     2.1384766      1.1322764      1639.6982    
294s       2800   1.9890373      0.15589593     2.1204126      1.2343376      1639.6982    
294s       2900   1.9922852      0.15256969     2.0956529      1.2419163      1639.6982    
294s       3000   1.9618081      0.18405952     2.1392907      1.3468022      1639.6982    
294s       3100   1.9208141      0.22640846     2.1223515      1.6487932      1639.6982    
294s       3200   1.9201454      0.22718165     2.1360381      1.5370081      1639.6982    
294s       3300   2.0073185      0.13690917     2.1185875      1.1974013      1639.6982    
294s       3400   2.0179674      0.12601938     2.1227813      1.0847666      1639.6982    
294s       3500   1.9561087      0.18991131     2.1150364      1.337739       1639.6982    
294s       3600   1.9971228      0.14756112     2.1401422      1.2026317      1639.6982    
294s       3700   1.9731706      0.1723087      2.1473857      1.273159       1639.6982    
294s       3800   2.0001051      0.14443379     2.0995168      1.1502317      1639.6982    
294s       3900   1.9911498      0.15371621     2.1424901      1.2279921      1639.6982    
294s       4000   1.9825331      0.16267827     2.0899844      1.2154927      1639.6982    
294s Loop time of 1.03167 on 2 procs for 2000 steps with 400 atoms
294s 
294s Performance: 334992.149 tau/day, 1938.612 timesteps/s, 775.445 katom-step/s
294s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads
294s 
294s MPI task timing breakdown:
294s Section |  min time  |  avg time  |  max time  |%varavg| %total
294s ---------------------------------------------------------------
294s Pair    | 0.80145    | 0.84393    | 0.88641    |   4.6 | 81.80
294s Neigh   | 0.002287   | 0.0025219  | 0.0027567  |   0.5 |  0.24
294s Comm    | 0.062544   | 0.1054     | 0.14827    |  13.2 | 10.22
294s Output  | 0.016942   | 0.01738    | 0.017818   |   0.3 |  1.68
294s Modify  | 0.043741   | 0.046207   | 0.048674   |   1.1 |  4.48
294s Other   |            | 0.01622    |            |       |  1.57
294s 
294s Nlocal:            200 ave         212 max         188 min
294s Histogram: 1 0 0 0 0 0 0 0 0 1
294s Nghost:          171.5 ave         173 max         170 min
294s Histogram: 1 0 0 0 0 0 0 0 0 1
294s Neighs:          880.5 ave         946 max         815 min
294s Histogram: 1 0 0 0 0 0 0 0 0 1
294s 
294s Total # of neighbors = 1761
294s Ave neighs/atom = 4.4025
294s Neighbor list builds = 49
294s Dangerous builds = 0
294s Total wall time: 0:00:01
294s LAMMPS (4 Feb 2025)
294s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
294s   using 1 OpenMP thread(s) per MPI task
294s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678
294s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
294s   1 by 1 by 1 MPI processor grid
294s Created 400 atoms
294s   using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339)
294s   create_atoms CPU = 0.001 seconds
294s Setting atom values ...
294s   29 settings made for type/fraction
294s Setting atom values ...
294s   371 settings made for mass
294s Setting atom values ...
294s   29 settings made for mass
294s Setting atom values ...
294s   371 settings made for shape
294s Setting atom values ...
294s   29 settings made for shape
294s Setting atom values ...
294s   400 settings made for quat/random
294s 371 atoms in group spheroid
294s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
294s Neighbor list info ...
294s   update: every = 1 steps, delay = 0 steps, check = yes
294s   max neighbors/atom: 2000, page size: 100000
294s   master list distance cutoff = 4.8
294s   ghost atom cutoff = 4.8
294s   binsize = 2.4, bins = 59 59 3
294s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
294s   (1) pair resquared, perpetual
294s       attributes: half, newton on
294s       pair build: half/bin/atomonly/newton
294s       stencil: half/bin/2d
294s       bin: standard
294s Setting up Verlet run ...
294s   Unit style    : lj
294s   Current step  : 0
294s   Time step     : 0.002
294s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes
294s    Step         c_rot          E_pair         TotEng         Press          Volume    
294s          0   2.3158404      0              2.394          0.04788        20000        
294s        100   1.7101139      0              1.7678302      0.034413192    20548.286    
294s        200   2.3115592      0              2.3895743      0.04649702     20556.796    
294s        300   1.831333       0              1.8931405      0.041256922    18354.646    
294s        400   2.1837684     -8.9738883e-06  2.2574616      0.066522186    13574.035    
294s        500   1.9709471      0.0022832653   2.017568       0.098398099    8395.6884    
294s        600   2.1312025      0.15575534     2.2465639      0.43878461     4664.4094    
294s        700   1.9768729      0.20704026     2.1544534      0.85727857     2661.7782    
295s        800   1.8049358      0.20410493     1.965827       1.2647972      1769.9195    
295s        900   1.8115555      0.2163004      1.9984639      1.6554526      1443.3838    
295s       1000   1.9171641      0.2328859      2.1621182      1.7795638      1436.7766    
295s       1100   1.9523886      0.09158383     2.0589755      0.91188602     1668.1861    
295s       1200   2.0844678      0.062228051    2.0997798      0.63282414     2088.0586    
295s       1300   1.9225253      0.052820284    1.9484124      0.44379326     2643.4175    
295s       1400   2.1265088      0.033305088    2.1345672      0.34979266     3172.6223    
295s       1500   1.9551661      0.053995306    2.0077177      0.34810901     3444.8372    
295s       1600   2.15222        0.057084004    2.1910214      0.39212275     3290.66      
295s       1700   2.0126393      0.092807299    2.0739086      0.53567035     2812.2166    
295s       1800   2.1109716      0.18678852     2.2572287      1.0092292      2267.5536    
295s       1900   1.9107655      0.26801333     2.1635401      1.5374301      1862.3897    
296s       2000   1.9034522      0.24431156     2.1576939      1.5998792      1639.6982    
296s Loop time of 1.18983 on 1 procs for 2000 steps with 400 atoms
296s 
296s Performance: 290461.521 tau/day, 1680.912 timesteps/s, 672.365 katom-step/s
296s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads
296s 
296s MPI task timing breakdown:
296s Section |  min time  |  avg time  |  max time  |%varavg| %total
296s ---------------------------------------------------------------
296s Pair    | 0.95983    | 0.95983    | 0.95983    |   0.0 | 80.67
296s Neigh   | 0.023263   | 0.023263   | 0.023263   |   0.0 |  1.96
296s Comm    | 0.013288   | 0.013288   | 0.013288   |   0.0 |  1.12
296s Output  | 0.026688   | 0.026688   | 0.026688   |   0.0 |  2.24
296s Modify  | 0.15558    | 0.15558    | 0.15558    |   0.0 | 13.08
296s Other   |            | 0.01119    |            |       |  0.94
296s 
296s Nlocal:            400 ave         400 max         400 min
296s Histogram: 1 0 0 0 0 0 0 0 0 0
296s Nghost:            206 ave         206 max         206 min
296s Histogram: 1 0 0 0 0 0 0 0 0 0
296s Neighs:           1820 ave        1820 max        1820 min
296s Histogram: 1 0 0 0 0 0 0 0 0 0
296s 
296s Total # of neighbors = 1820
296s Ave neighs/atom = 4.55
296s Neighbor list builds = 420
296s Dangerous builds = 0
296s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule
296s Setting up Verlet run ...
296s   Unit style    : lj
296s   Current step  : 2000
296s   Time step     : 0.002
296s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes
296s    Step         c_rot          E_pair         TotEng         Press          Volume    
296s       2000   1.9034522      0.24431156     2.1576939      1.5998792      1639.6982    
296s       2100   1.9990056      0.14555548     2.132148       1.1813518      1639.6982    
296s       2200   1.9913934      0.15343329     2.1279388      1.2079524      1639.6982    
296s       2300   1.9931915      0.15156716     2.1646511      1.1963228      1639.6982    
296s       2400   1.9969018      0.14779678     2.1413044      1.1999441      1639.6982    
296s       2500   1.9401284      0.20640998     2.168038       1.4643778      1639.6982    
296s       2600   1.9492999      0.19710633     2.136292       1.3812079      1639.6982    
296s       2700   2.0106221      0.13364602     2.1384766      1.1322764      1639.6982    
296s       2800   1.9890373      0.15589593     2.1204126      1.2343376      1639.6982    
296s       2900   1.9922852      0.15256971     2.0956529      1.2419164      1639.6982    
296s       3000   1.9618081      0.18405952     2.1392906      1.3468022      1639.6982    
297s       3100   1.9208145      0.22640808     2.1223513      1.6487904      1639.6982    
297s       3200   1.9201455      0.22718157     2.136038       1.5370079      1639.6982    
297s       3300   2.0073203      0.13690734     2.1185861      1.1973861      1639.6982    
297s       3400   2.0179675      0.12601936     2.1227814      1.0847665      1639.6982    
297s       3500   1.956107       0.18991303     2.1150378      1.3377467      1639.6982    
297s       3600   1.9971207      0.14756338     2.1401427      1.2026439      1639.6982    
297s       3700   1.9731785      0.17230049     2.1473634      1.2731222      1639.6982    
297s       3800   2.0001027      0.14443629     2.0995017      1.1502317      1639.6982    
297s       3900   1.9911478      0.15371832     2.1424588      1.2279852      1639.6982    
297s       4000   1.9824541      0.16275998     2.0899755      1.2158078      1639.6982    
297s Loop time of 1.86466 on 1 procs for 2000 steps with 400 atoms
297s 
297s Performance: 185342.552 tau/day, 1072.584 timesteps/s, 429.034 katom-step/s
297s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads
297s 
297s MPI task timing breakdown:
297s Section |  min time  |  avg time  |  max time  |%varavg| %total
297s ---------------------------------------------------------------
297s Pair    | 1.7169     | 1.7169     | 1.7169     |   0.0 | 92.08
297s Neigh   | 0.0047385  | 0.0047385  | 0.0047385  |   0.0 |  0.25
297s Comm    | 0.01406    | 0.01406    | 0.01406    |   0.0 |  0.75
297s Output  | 0.026274   | 0.026274   | 0.026274   |   0.0 |  1.41
297s Modify  | 0.092363   | 0.092363   | 0.092363   |   0.0 |  4.95
297s Other   |            | 0.01032    |            |       |  0.55
297s 
297s Nlocal:            400 ave         400 max         400 min
297s Histogram: 1 0 0 0 0 0 0 0 0 0
297s Nghost:            215 ave         215 max         215 min
297s Histogram: 1 0 0 0 0 0 0 0 0 0
297s Neighs:           1761 ave        1761 max        1761 min
297s Histogram: 1 0 0 0 0 0 0 0 0 0
297s 
297s Total # of neighbors = 1761
297s Ave neighs/atom = 4.4025
297s Neighbor list builds = 49
297s Dangerous builds = 0
297s Total wall time: 0:00:03
297s run: OK
298s autopkgtest [01:14:04]: test ellipse: -----------------------]
302s ellipse              PASS
302s autopkgtest [01:14:08]: test ellipse:  - - - - - - - - - - results - - - - - - - - - -
306s autopkgtest [01:14:12]: test flow: preparing testbed
308s Reading package lists...
308s Building dependency tree...
308s Reading state information...
308s Solving dependencies...
309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
317s autopkgtest [01:14:23]: test flow: [-----------------------
319s LAMMPS (4 Feb 2025)
319s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
319s   using 1 OpenMP thread(s) per MPI task
319s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567
319s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918)
319s   2 by 1 by 1 MPI processor grid
319s Created 420 atoms
319s   using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918)
319s   create_atoms CPU = 0.000 seconds
319s 60 atoms in group lower
319s 60 atoms in group upper
319s 120 atoms in group boundary
319s 300 atoms in group flow
319s Setting atom values ...
319s   60 settings made for type
319s Setting atom values ...
319s   60 settings made for type
319s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
319s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule
319s Neighbor list info ...
319s   update: every = 1 steps, delay = 5 steps, check = yes
319s   max neighbors/atom: 2000, page size: 100000
319s   master list distance cutoff = 1.42246
319s   ghost atom cutoff = 1.42246
319s   binsize = 0.71123, bins = 37 32 1
319s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
319s   (1) pair lj/cut, perpetual
319s       attributes: half, newton on
319s       pair build: half/bin/atomonly/newton
319s       stencil: half/bin/2d
319s       bin: standard
319s Setting up Verlet run ...
319s   Unit style    : lj
319s   Current step  : 0
319s   Time step     : 0.003
319s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes
319s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
319s          0   1              0              0              0.71190476     0.52314537     571.54286    
319s        500   1.0951876     -0.33403931     0              0.44562996     3.2502319      571.54286    
319s       1000   1             -0.3731019      0              0.33880286     2.8561715      571.54286    
319s       1500   1.0366879     -0.36031105     0              0.37771198     3.0196355      571.54286    
319s       2000   1             -0.41053        0              0.30137476     2.8651912      571.54286    
319s       2500   1.1226657     -0.37033202     0              0.42889907     2.9449242      571.54286    
319s       3000   1             -0.37829439     0              0.33361038     2.724957       571.54286    
319s       3500   1.0214075     -0.4474262      0              0.27971864     2.4340575      571.54286    
319s       4000   1             -0.42466402     0              0.28724075     2.6468652      571.54286    
319s       4500   1.0385223     -0.4060451      0              0.33328387     2.8049948      571.54286    
319s       5000   1             -0.44140506     0              0.2704997      2.5732992      571.54286    
319s       5500   1.0412543     -0.42975001     0              0.31152391     2.5569509      571.54286    
319s       6000   1             -0.40966109     0              0.30224367     2.3906115      571.54286    
319s       6500   1.0821406     -0.37547129     0              0.39490976     2.5922081      571.54286    
319s       7000   1             -0.41060008     0              0.30130468     2.8506205      571.54286    
319s       7500   1.0819999     -0.43038503     0              0.33989586     2.6996672      571.54286    
319s       8000   1             -0.3796336      0              0.33227116     2.5245689      571.54286    
319s       8500   0.94746225    -0.40425285     0              0.27025004     2.5790953      571.54286    
319s       9000   1             -0.4061947      0              0.30571006     2.3866707      571.54286    
319s       9500   1.0336946     -0.4404991      0              0.29539298     2.2934496      571.54286    
319s      10000   1             -0.44465733     0              0.26724744     2.2764313      571.54286    
319s Loop time of 0.320849 on 2 procs for 10000 steps with 420 atoms
319s 
319s Performance: 8078576.499 tau/day, 31167.348 timesteps/s, 13.090 Matom-step/s
319s 91.6% CPU use with 2 MPI tasks x 1 OpenMP threads
319s 
319s MPI task timing breakdown:
319s Section |  min time  |  avg time  |  max time  |%varavg| %total
319s ---------------------------------------------------------------
319s Pair    | 0.046027   | 0.047371   | 0.048715   |   0.6 | 14.76
319s Neigh   | 0.022349   | 0.022926   | 0.023504   |   0.4 |  7.15
319s Comm    | 0.15935    | 0.16298    | 0.1666     |   0.9 | 50.80
319s Output  | 0.00089777 | 0.0013926  | 0.0018874  |   1.3 |  0.43
319s Modify  | 0.036052   | 0.037007   | 0.037963   |   0.5 | 11.53
319s Other   |            | 0.04917    |            |       | 15.33
319s 
319s Nlocal:            210 ave         213 max         207 min
319s Histogram: 1 0 0 0 0 0 0 0 0 1
319s Nghost:           50.5 ave          51 max          50 min
319s Histogram: 1 0 0 0 0 0 0 0 0 1
319s Neighs:          480.5 ave         492 max         469 min
319s Histogram: 1 0 0 0 0 0 0 0 0 1
319s 
319s Total # of neighbors = 961
319s Ave neighs/atom = 2.2880952
319s Neighbor list builds = 964
319s Dangerous builds = 0
319s Total wall time: 0:00:00
319s LAMMPS (4 Feb 2025)
319s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
319s   using 1 OpenMP thread(s) per MPI task
319s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567
319s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918)
319s   1 by 1 by 1 MPI processor grid
319s Created 420 atoms
319s   using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918)
319s   create_atoms CPU = 0.000 seconds
319s 60 atoms in group lower
319s 60 atoms in group upper
319s 120 atoms in group boundary
319s 300 atoms in group flow
319s Setting atom values ...
319s   60 settings made for type
319s Setting atom values ...
319s   60 settings made for type
319s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
319s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule
319s Neighbor list info ...
319s   update: every = 1 steps, delay = 5 steps, check = yes
319s   max neighbors/atom: 2000, page size: 100000
319s   master list distance cutoff = 1.42246
319s   ghost atom cutoff = 1.42246
319s   binsize = 0.71123, bins = 37 32 1
319s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
319s   (1) pair lj/cut, perpetual
319s       attributes: half, newton on
319s       pair build: half/bin/atomonly/newton
319s       stencil: half/bin/2d
319s       bin: standard
319s Setting up Verlet run ...
319s   Unit style    : lj
319s   Current step  : 0
319s   Time step     : 0.003
319s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes
319s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
319s          0   1              0              0              0.71190476     0.52314537     571.54286    
319s        500   1.0644427     -0.31382888     0              0.44395296     3.0013076      571.54286    
319s       1000   1             -0.42965445     0              0.28225032     2.9612165      571.54286    
319s       1500   1.0739874     -0.41189772     0              0.35267901     2.5621951      571.54286    
319s       2000   1             -0.40814263     0              0.30376214     2.9229587      571.54286    
319s       2500   1.1929729     -0.38735055     0              0.46193257     2.8337691      571.54286    
319s       3000   1             -0.44542386     0              0.2664809      2.7214531      571.54286    
319s       3500   1.1553179     -0.42687142     0              0.39560493     2.5109633      571.54286    
319s       4000   1             -0.40604742     0              0.30585734     2.7055928      571.54286    
319s       4500   1.1498154     -0.44055268     0              0.37800642     2.5561154      571.54286    
319s       5000   1             -0.41742254     0              0.29448222     2.4788457      571.54286    
319s       5500   1.014604      -0.42503236     0              0.29726906     2.579664       571.54286    
319s       6000   1             -0.41264837     0              0.29925639     2.5861705      571.54286    
319s       6500   1.1443238     -0.4392768      0              0.37537274     2.2801246      571.54286    
319s       7000   1             -0.38852754     0              0.32337722     2.3294037      571.54286    
319s       7500   1.0568142     -0.42350098     0              0.32885011     2.3953589      571.54286    
319s       8000   1             -0.39343        0              0.31847477     2.5701342      571.54286    
319s       8500   1.0872157     -0.46282796     0              0.3111661      2.2892446      571.54286    
320s       9000   1             -0.402333       0              0.30957177     2.4852035      571.54286    
320s       9500   0.99889786    -0.46870263     0              0.24241751     2.3763314      571.54286    
320s      10000   1             -0.43338695     0              0.27851782     2.405424       571.54286    
320s Loop time of 0.242765 on 1 procs for 10000 steps with 420 atoms
320s 
320s Performance: 10676972.538 tau/day, 41192.024 timesteps/s, 17.301 Matom-step/s
320s 95.6% CPU use with 1 MPI tasks x 1 OpenMP threads
320s 
320s MPI task timing breakdown:
320s Section |  min time  |  avg time  |  max time  |%varavg| %total
320s ---------------------------------------------------------------
320s Pair    | 0.090426   | 0.090426   | 0.090426   |   0.0 | 37.25
320s Neigh   | 0.042873   | 0.042873   | 0.042873   |   0.0 | 17.66
320s Comm    | 0.015928   | 0.015928   | 0.015928   |   0.0 |  6.56
320s Output  | 0.0013726  | 0.0013726  | 0.0013726  |   0.0 |  0.57
320s Modify  | 0.062048   | 0.062048   | 0.062048   |   0.0 | 25.56
320s Other   |            | 0.03012    |            |       | 12.41
320s 
320s Nlocal:            420 ave         420 max         420 min
320s Histogram: 1 0 0 0 0 0 0 0 0 0
320s Nghost:             46 ave          46 max          46 min
320s Histogram: 1 0 0 0 0 0 0 0 0 0
320s Neighs:            952 ave         952 max         952 min
320s Histogram: 1 0 0 0 0 0 0 0 0 0
320s 
320s Total # of neighbors = 952
320s Ave neighs/atom = 2.2666667
320s Neighbor list builds = 996
320s Dangerous builds = 0
320s Total wall time: 0:00:00
320s LAMMPS (4 Feb 2025)
320s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
320s   using 1 OpenMP thread(s) per MPI task
320s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567
320s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918)
320s   2 by 1 by 1 MPI processor grid
320s Created 420 atoms
320s   using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918)
320s   create_atoms CPU = 0.001 seconds
320s 60 atoms in group lower
320s 60 atoms in group upper
320s 120 atoms in group boundary
320s 300 atoms in group flow
320s Setting atom values ...
320s   60 settings made for type
320s Setting atom values ...
320s   60 settings made for type
320s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
320s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule
320s Neighbor list info ...
320s   update: every = 1 steps, delay = 5 steps, check = yes
320s   max neighbors/atom: 2000, page size: 100000
320s   master list distance cutoff = 1.42246
320s   ghost atom cutoff = 1.42246
320s   binsize = 0.71123, bins = 37 32 1
320s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
320s   (1) pair lj/cut, perpetual
320s       attributes: half, newton on
320s       pair build: half/bin/atomonly/newton
320s       stencil: half/bin/2d
320s       bin: standard
320s Setting up Verlet run ...
320s   Unit style    : lj
320s   Current step  : 0
320s   Time step     : 0.003
320s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes
320s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
320s          0   1              0              0              0.71190476     0.52314537     571.54286    
320s        500   1.0758737     -0.36090417     0              0.40501541     2.7822308      575.0659     
320s       1000   1             -0.35701441     0              0.35489035     2.0575313      585.71407    
320s       1500   1.2368663     -0.37709732     0              0.50343367     1.4865879      587.193      
320s       2000   1             -0.39362939     0              0.31827537     1.4236         578.9418     
320s       2500   1.2272957     -0.423819       0              0.44989866     1.454461       570.15856    
320s       3000   1             -0.49143429     0              0.22047048     1.5345942      554.98632    
320s       3500   1.2445009     -0.59762587     0              0.28834022     1.8753189      537.01593    
320s       4000   1             -0.69889809     0              0.013006674    2.1402865      521.46673    
320s       4500   1.2185161     -0.73848066     0              0.12898676     2.7425317      507.73058    
320s       5000   1             -0.79158059     0             -0.079675829    3.1146693      502.02129    
320s       5500   1.23812       -0.76063102     0              0.12079254     2.6101517      503.98532    
320s       6000   1             -0.68093927     0              0.030965489    2.4050071      506.73975    
320s       6500   1.2305347     -0.71537739     0              0.16064612     2.0966847      510.57681    
320s       7000   1             -0.69996568     0              0.011939084    2.0829242      513.97036    
320s       7500   1.2387996     -0.67617771     0              0.20572962     1.9857051      511.54835    
320s       8000   1             -0.72135901     0             -0.0094542445   2.3327964      508.8105     
320s       8500   1.2500467     -0.77802894     0              0.11188529     2.2915813      505.72027    
320s       9000   1             -0.77033319     0             -0.058428426    2.4993315      503.47206    
320s       9500   1.2000703     -0.74305547     0              0.11128027     2.3321564      504.5062     
320s      10000   1             -0.72090813     0             -0.0090033642   2.3379679      505.23554    
320s Loop time of 0.497438 on 2 procs for 10000 steps with 420 atoms
320s 
320s Performance: 5210699.834 tau/day, 20103.009 timesteps/s, 8.443 Matom-step/s
320s 96.6% CPU use with 2 MPI tasks x 1 OpenMP threads
320s 
320s MPI task timing breakdown:
320s Section |  min time  |  avg time  |  max time  |%varavg| %total
320s ---------------------------------------------------------------
320s Pair    | 0.050221   | 0.050302   | 0.050383   |   0.0 | 10.11
320s Neigh   | 0.013245   | 0.01325    | 0.013256   |   0.0 |  2.66
320s Comm    | 0.2346     | 0.23521    | 0.23582    |   0.1 | 47.28
320s Output  | 0.0012628  | 0.0017327  | 0.0022027  |   1.1 |  0.35
320s Modify  | 0.14042    | 0.14074    | 0.14107    |   0.1 | 28.29
320s Other   |            | 0.0562     |            |       | 11.30
320s 
320s Nlocal:            210 ave         213 max         207 min
320s Histogram: 1 0 0 0 0 0 0 0 0 1
320s Nghost:             50 ave          51 max          49 min
320s Histogram: 1 0 0 0 0 0 0 0 0 1
320s Neighs:          558.5 ave         573 max         544 min
320s Histogram: 1 0 0 0 0 0 0 0 0 1
320s 
320s Total # of neighbors = 1117
320s Ave neighs/atom = 2.6595238
320s Neighbor list builds = 562
320s Dangerous builds = 0
320s Total wall time: 0:00:00
320s LAMMPS (4 Feb 2025)
320s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
320s   using 1 OpenMP thread(s) per MPI task
320s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567
320s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918)
320s   1 by 1 by 1 MPI processor grid
320s Created 420 atoms
320s   using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918)
320s   create_atoms CPU = 0.000 seconds
320s 60 atoms in group lower
320s 60 atoms in group upper
320s 120 atoms in group boundary
320s 300 atoms in group flow
320s Setting atom values ...
320s   60 settings made for type
320s Setting atom values ...
320s   60 settings made for type
320s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
320s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule
320s Neighbor list info ...
320s   update: every = 1 steps, delay = 5 steps, check = yes
320s   max neighbors/atom: 2000, page size: 100000
320s   master list distance cutoff = 1.42246
320s   ghost atom cutoff = 1.42246
320s   binsize = 0.71123, bins = 37 32 1
320s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
320s   (1) pair lj/cut, perpetual
320s       attributes: half, newton on
320s       pair build: half/bin/atomonly/newton
320s       stencil: half/bin/2d
320s       bin: standard
320s Setting up Verlet run ...
320s   Unit style    : lj
320s   Current step  : 0
320s   Time step     : 0.003
320s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes
320s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
320s          0   1              0              0              0.71190476     0.52314537     571.54286    
320s        500   1.0990751     -0.36396768     0              0.41846911     2.522517       575.55806    
320s       1000   1             -0.34609791     0              0.36580685     1.9736175      584.67179    
320s       1500   1.2112861     -0.39062708     0              0.47169327     1.521881       587.24778    
320s       2000   1             -0.39956949     0              0.31233527     1.2496669      583.00676    
320s       2500   1.2236323     -0.40128446     0              0.46982521     1.4276891      570.03729    
320s       3000   1             -0.48849353     0              0.22341123     1.5091361      553.64637    
320s       3500   1.2404547     -0.63017551     0              0.25291012     1.768107       535.22599    
320s       4000   1             -0.71545964     0             -0.0035548789   2.2079822      516.73161    
320s       4500   1.2270239     -0.78740977     0              0.086114399    2.6094706      503.17906    
320s       5000   1             -0.8367971      0             -0.12489233     3.186175       498.73275    
320s       5500   1.2257721     -0.77200456     0              0.10062844     2.6369599      502.75573    
320s       6000   1             -0.6766551      0              0.035249665    2.2092944      512.08396    
321s       6500   1.2201203     -0.67876788     0              0.18984154     1.8784541      517.92079    
321s       7000   1             -0.68555696     0              0.026347797    1.8142356      516.44963    
321s       7500   1.2482526     -0.7345934      0              0.15404357     2.0253109      511.4042     
321s       8000   1             -0.70068231     0              0.011222455    2.1739831      504.55527    
321s       8500   1.2151375     -0.77680457     0              0.088257564    2.6264947      498.00946    
321s       9000   1             -0.74461165     0             -0.032706889    2.574656       498.14523    
321s       9500   1.2047533     -0.75768848     0              0.09998113     2.4174997      501.8877     
321s      10000   1             -0.67361996     0              0.038284798    2.2310948      507.57444    
321s Loop time of 0.297422 on 1 procs for 10000 steps with 420 atoms
321s 
321s Performance: 8714890.863 tau/day, 33622.264 timesteps/s, 14.121 Matom-step/s
321s 93.6% CPU use with 1 MPI tasks x 1 OpenMP threads
321s 
321s MPI task timing breakdown:
321s Section |  min time  |  avg time  |  max time  |%varavg| %total
321s ---------------------------------------------------------------
321s Pair    | 0.098831   | 0.098831   | 0.098831   |   0.0 | 33.23
321s Neigh   | 0.024521   | 0.024521   | 0.024521   |   0.0 |  8.24
321s Comm    | 0.012972   | 0.012972   | 0.012972   |   0.0 |  4.36
321s Output  | 0.0014418  | 0.0014418  | 0.0014418  |   0.0 |  0.48
321s Modify  | 0.13041    | 0.13041    | 0.13041    |   0.0 | 43.85
321s Other   |            | 0.02925    |            |       |  9.83
321s 
321s Nlocal:            420 ave         420 max         420 min
321s Histogram: 1 0 0 0 0 0 0 0 0 0
321s Nghost:             48 ave          48 max          48 min
321s Histogram: 1 0 0 0 0 0 0 0 0 0
321s Neighs:           1124 ave        1124 max        1124 min
321s Histogram: 1 0 0 0 0 0 0 0 0 0
321s 
321s Total # of neighbors = 1124
321s Ave neighs/atom = 2.6761905
321s Neighbor list builds = 561
321s Dangerous builds = 0
321s Total wall time: 0:00:00
321s run: OK
321s autopkgtest [01:14:27]: test flow: -----------------------]
325s flow                 PASS
325s autopkgtest [01:14:31]: test flow:  - - - - - - - - - - results - - - - - - - - - -
329s autopkgtest [01:14:35]: test friction: preparing testbed
331s Reading package lists...
331s Building dependency tree...
331s Reading state information...
331s Solving dependencies...
332s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
339s autopkgtest [01:14:45]: test friction: [-----------------------
341s LAMMPS (4 Feb 2025)
341s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
341s   using 1 OpenMP thread(s) per MPI task
341s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962
341s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404)
341s   2 by 1 by 1 MPI processor grid
341s Created 750 atoms
341s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
341s   create_atoms CPU = 0.001 seconds
341s Created 750 atoms
341s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
341s   create_atoms CPU = 0.000 seconds
341s Created 112 atoms
341s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
341s   create_atoms CPU = 0.000 seconds
341s Created 112 atoms
341s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
341s   create_atoms CPU = 0.000 seconds
341s 750 atoms in group lo
341s 862 atoms in group lo
341s 750 atoms in group hi
341s 862 atoms in group hi
341s 150 atoms in group lo-fixed
341s 150 atoms in group hi-fixed
341s 300 atoms in group boundary
341s 1424 atoms in group mobile
341s Setting atom values ...
341s   150 settings made for type
341s Setting atom values ...
341s   150 settings made for type
341s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
341s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule
341s Neighbor list info ...
341s   update: every = 1 steps, delay = 5 steps, check = yes
341s   max neighbors/atom: 2000, page size: 100000
341s   master list distance cutoff = 2.8
341s   ghost atom cutoff = 2.8
341s   binsize = 1.4, bins = 41 31 1
341s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
341s   (1) pair lj/cut, perpetual
341s       attributes: half, newton on
341s       pair build: half/bin/atomonly/newton
341s       stencil: half/bin/2d
341s       bin: standard
341s Setting up Verlet run ...
341s   Unit style    : lj
341s   Current step  : 0
341s   Time step     : 0.0025
341s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes
341s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
341s          0   0.1           -3.1333672      0             -3.0920969     -1.1437663      2444.9333    
341s       1000   0.081091635   -3.0930924      0             -3.0596257     -0.030127914    2444.9333    
341s       2000   0.082087761   -3.0850474      0             -3.0511696     -0.44306626     2444.9333    
342s       3000   0.088948343   -3.08139        0             -3.0446807     -0.25586469     2444.9333    
342s       4000   0.091186493   -3.0656845      0             -3.0280515     -0.10060397     2444.9333    
342s       5000   0.10802896    -3.0566391      0             -3.0120553     -0.13618814     2444.9333    
342s       6000   0.1           -3.0489246      0             -3.0076543     -0.20314787     2444.9333    
342s       7000   0.11587092    -3.0413277      0             -2.9935074     -0.37543734     2444.9333    
342s       8000   0.1           -3.0296549      0             -2.9883846     -0.41894885     2444.9333    
343s       9000   0.11363101    -3.0247314      0             -2.9778355     -0.43224741     2444.9333    
343s      10000   0.11551834    -3.0287315      0             -2.9810568     -0.37046468     2444.9333    
343s      11000   0.1131303     -3.0177397      0             -2.9710505     -0.48802477     2444.9333    
343s      12000   0.1           -3.0280411      0             -2.9867708     -0.23387667     2444.9333    
343s      13000   0.11507336    -3.0315952      0             -2.984104      -0.40349366     2444.9333    
344s      14000   0.11501583    -3.0318726      0             -2.9844053     -0.31400965     2444.9333    
344s      15000   0.10799871    -3.0337962      0             -2.9892248     -0.32505402     2444.9333    
344s      16000   0.10673344    -3.0405071      0             -2.9964579     -0.24604448     2444.9333    
344s      17000   0.10623843    -3.0391607      0             -2.9953158     -0.44372008     2444.9333    
344s      18000   0.11358768    -3.0422681      0             -2.9953901     -0.30148543     2444.9333    
344s      19000   0.11591119    -3.0468785      0             -2.9990416     -0.33570287     2444.9333    
345s      20000   0.11149703    -3.0428984      0             -2.9968833     -0.34952494     2444.9333    
345s Loop time of 3.54803 on 2 procs for 20000 steps with 1724 atoms
345s 
345s Performance: 1217576.524 tau/day, 5636.928 timesteps/s, 9.718 Matom-step/s
345s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads
345s 
345s MPI task timing breakdown:
345s Section |  min time  |  avg time  |  max time  |%varavg| %total
345s ---------------------------------------------------------------
345s Pair    | 1.9249     | 2.0703     | 2.2157     |  10.1 | 58.35
345s Neigh   | 0.10432    | 0.11599    | 0.12765    |   3.4 |  3.27
345s Comm    | 0.73354    | 0.8895     | 1.0455     |  16.5 | 25.07
345s Output  | 0.0014459  | 0.0019894  | 0.002533   |   1.2 |  0.06
345s Modify  | 0.23061    | 0.24702    | 0.26343    |   3.3 |  6.96
345s Other   |            | 0.2232     |            |       |  6.29
345s 
345s Nlocal:            862 ave         868 max         856 min
345s Histogram: 1 0 0 0 0 0 0 0 0 1
345s Nghost:          160.5 ave         161 max         160 min
345s Histogram: 1 0 0 0 0 0 0 0 0 1
345s Neighs:         7178.5 ave        7223 max        7134 min
345s Histogram: 1 0 0 0 0 0 0 0 0 1
345s 
345s Total # of neighbors = 14357
345s Ave neighs/atom = 8.3277262
345s Neighbor list builds = 716
345s Dangerous builds = 0
345s Total wall time: 0:00:03
345s LAMMPS (4 Feb 2025)
345s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
345s   using 1 OpenMP thread(s) per MPI task
345s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962
345s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404)
345s   1 by 1 by 1 MPI processor grid
345s Created 750 atoms
345s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
345s   create_atoms CPU = 0.000 seconds
345s Created 750 atoms
345s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
345s   create_atoms CPU = 0.000 seconds
345s Created 112 atoms
345s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
345s   create_atoms CPU = 0.000 seconds
345s Created 112 atoms
345s   using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404)
345s   create_atoms CPU = 0.000 seconds
345s 750 atoms in group lo
345s 862 atoms in group lo
345s 750 atoms in group hi
345s 862 atoms in group hi
345s 150 atoms in group lo-fixed
345s 150 atoms in group hi-fixed
345s 300 atoms in group boundary
345s 1424 atoms in group mobile
345s Setting atom values ...
345s   150 settings made for type
345s Setting atom values ...
345s   150 settings made for type
345s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551)
345s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule
345s Neighbor list info ...
345s   update: every = 1 steps, delay = 5 steps, check = yes
345s   max neighbors/atom: 2000, page size: 100000
345s   master list distance cutoff = 2.8
345s   ghost atom cutoff = 2.8
345s   binsize = 1.4, bins = 41 31 1
345s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
345s   (1) pair lj/cut, perpetual
345s       attributes: half, newton on
345s       pair build: half/bin/atomonly/newton
345s       stencil: half/bin/2d
345s       bin: standard
345s Setting up Verlet run ...
345s   Unit style    : lj
345s   Current step  : 0
345s   Time step     : 0.0025
345s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes
345s    Step          Temp          E_pair         E_mol          TotEng         Press          Volume    
345s          0   0.1           -3.1333672      0             -3.0920969     -1.1437663      2444.9333    
345s       1000   0.1           -3.0915072      0             -3.0502369      0.0099866805   2444.9333    
345s       2000   0.1           -3.0826007      0             -3.0413304     -0.41998885     2444.9333    
345s       3000   0.08982505    -3.0757908      0             -3.0387197     -0.25244271     2444.9333    
346s       4000   0.098727892   -3.0666371      0             -3.0258918     -0.25382683     2444.9333    
346s       5000   0.11345478    -3.0506905      0             -3.0038674     -0.029177812    2444.9333    
346s       6000   0.11386723    -3.0515296      0             -3.0045363     -0.32135016     2444.9333    
346s       7000   0.11555642    -3.0379879      0             -2.9902974     -0.40431666     2444.9333    
347s       8000   0.10658282    -3.0364048      0             -2.9924178     -0.45722834     2444.9333    
347s       9000   0.11650947    -3.0271611      0             -2.9790773     -0.4588819      2444.9333    
347s      10000   0.10575546    -3.0298463      0             -2.9862007     -0.35241095     2444.9333    
347s      11000   0.10953331    -3.0352955      0             -2.9900908     -0.4622173      2444.9333    
348s      12000   0.11720787    -3.0378371      0             -2.989465      -0.27733023     2444.9333    
348s      13000   0.11492573    -3.037974       0             -2.9905438     -0.43259084     2444.9333    
348s      14000   0.11125454    -3.0413758      0             -2.9954607     -0.31244429     2444.9333    
348s      15000   0.10882772    -3.0406062      0             -2.9956927     -0.30403665     2444.9333    
349s      16000   0.1152685     -3.0433936      0             -2.9958219     -0.26659294     2444.9333    
349s      17000   0.10840025    -3.0414208      0             -2.9966837     -0.36183887     2444.9333    
349s      18000   0.11159326    -3.0416392      0             -2.9955843     -0.22725121     2444.9333    
349s      19000   0.11530974    -3.0457005      0             -2.9981118     -0.36488457     2444.9333    
350s      20000   0.1131733     -3.0417814      0             -2.9950744     -0.27902539     2444.9333    
350s Loop time of 5.01052 on 1 procs for 20000 steps with 1724 atoms
350s 
350s Performance: 862186.672 tau/day, 3991.605 timesteps/s, 6.882 Matom-step/s
350s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads
350s 
350s MPI task timing breakdown:
350s Section |  min time  |  avg time  |  max time  |%varavg| %total
350s ---------------------------------------------------------------
350s Pair    | 4.0989     | 4.0989     | 4.0989     |   0.0 | 81.81
350s Neigh   | 0.21088    | 0.21088    | 0.21088    |   0.0 |  4.21
350s Comm    | 0.056494   | 0.056494   | 0.056494   |   0.0 |  1.13
350s Output  | 0.0035423  | 0.0035423  | 0.0035423  |   0.0 |  0.07
350s Modify  | 0.46743    | 0.46743    | 0.46743    |   0.0 |  9.33
350s Other   |            | 0.1732     |            |       |  3.46
350s 
350s Nlocal:           1724 ave        1724 max        1724 min
350s Histogram: 1 0 0 0 0 0 0 0 0 0
350s Nghost:            144 ave         144 max         144 min
350s Histogram: 1 0 0 0 0 0 0 0 0 0
350s Neighs:          14364 ave       14364 max       14364 min
350s Histogram: 1 0 0 0 0 0 0 0 0 0
350s 
350s Total # of neighbors = 14364
350s Ave neighs/atom = 8.3317865
350s Neighbor list builds = 714
350s Dangerous builds = 0
350s Total wall time: 0:00:05
350s run: OK
350s autopkgtest [01:14:56]: test friction: -----------------------]
354s friction             PASS
354s autopkgtest [01:15:00]: test friction:  - - - - - - - - - - results - - - - - - - - - -
358s autopkgtest [01:15:04]: test hugo: preparing testbed
360s Reading package lists...
360s Building dependency tree...
360s Reading state information...
360s Solving dependencies...
361s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
368s autopkgtest [01:15:14]: test hugo: [-----------------------
371s LAMMPS (4 Feb 2025)
371s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
371s   using 1 OpenMP thread(s) per MPI task
371s Lattice spacing in x,y,z = 1.4142135 2 2
371s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999)
371s   1 by 1 by 2 MPI processor grid
371s Created 1000 atoms
371s   using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999)
371s   create_atoms CPU = 0.000 seconds
371s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
371s Neighbor list info ...
371s   update: every = 1 steps, delay = 0 steps, check = yes
371s   max neighbors/atom: 2000, page size: 100000
371s   master list distance cutoff = 1.8475372
371s   ghost atom cutoff = 1.8475372
371s   binsize = 0.92376862, bins = 8 11 11
371s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
371s   (1) pair lj/cubic, perpetual
371s       attributes: half, newton on
371s       pair build: half/bin/atomonly/newton
371s       stencil: half/bin/3d
371s       bin: standard
371s Setting up cg style minimization ...
371s   Unit style    : lj
371s   Current step  : 0
371s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies
371s  (src/min.cpp:219)
371s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes
371s    Step          Temp          PotEng         TotEng          Pxx            Pyy            Pzz             Lx             Ly             Lz      
371s          0   0             -6.2937536     -6.2937536     -2.7722424     -2.7722424     -2.7722424      7.0710677      9.9999999      9.9999999    
371s        100   0             -6.3319014     -6.3319014     -0.75971257    -0.75971257    -0.75971257     7.0003571      9.8999999      9.8999999    
371s        134   0             -6.3344253     -6.3344253     -4.3497387e-13 -4.7220431e-13 -4.7089748e-13  6.9780267      9.8684199      9.8684199    
371s Loop time of 0.0401186 on 2 procs for 134 steps with 1000 atoms
371s 
371s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads
371s 
371s Minimization stats:
371s   Stopping criterion = force tolerance
371s   Energy initial, next-to-last, final = 
371s      -6.29375358358574  -6.33442531515467  -6.33442531515467
371s   Force two-norm initial, final = 3395.2895 5.5900884e-10
371s   Force max component initial, final = 1960.2713 3.2516979e-10
371s   Final line search alpha, max atom move = 1 3.2516979e-10
371s   Iterations, force evaluations = 134 137
371s 
371s MPI task timing breakdown:
371s Section |  min time  |  avg time  |  max time  |%varavg| %total
371s ---------------------------------------------------------------
371s Pair    | 0.022134   | 0.023972   | 0.025811   |   1.2 | 59.75
371s Neigh   | 0.00038391 | 0.00043155 | 0.00047918 |   0.0 |  1.08
371s Comm    | 0.0047281  | 0.0066098  | 0.0084914  |   2.3 | 16.48
371s Output  | 2.6799e-05 | 3.9879e-05 | 5.2958e-05 |   0.0 |  0.10
371s Modify  | 0          | 0          | 0          |   0.0 |  0.00
371s Other   |            | 0.009065   |            |       | 22.60
371s 
371s Nlocal:            500 ave         550 max         450 min
371s Histogram: 1 0 0 0 0 0 0 0 0 1
371s Nghost:           1214 ave        1264 max        1164 min
371s Histogram: 1 0 0 0 0 0 0 0 0 1
371s Neighs:          10500 ave       11550 max        9450 min
371s Histogram: 1 0 0 0 0 0 0 0 0 1
371s 
371s Total # of neighbors = 21000
371s Ave neighs/atom = 21
371s Neighbor list builds = 1
371s Dangerous builds = 0
371s System init for write_restart ...
371s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
371s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
371s   using 1 OpenMP thread(s) per MPI task
371s Reading restart file ...
371s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
371s   restoring atom style atomic from restart
371s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
371s   1 by 1 by 2 MPI processor grid
371s   restoring pair style lj/cubic from restart
371s   1000 atoms
371s   read_restart CPU = 0.001 seconds
371s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
371s Neighbor list info ...
371s   update: every = 1 steps, delay = 0 steps, check = yes
371s   max neighbors/atom: 2000, page size: 100000
371s   master list distance cutoff = 1.7475372
371s   ghost atom cutoff = 1.7475372
371s   binsize = 0.87376862, bins = 8 12 12
371s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
371s   (1) pair lj/cubic, perpetual
371s       attributes: half, newton on
371s       pair build: half/bin/atomonly/newton
371s       stencil: half/bin/3d
371s       bin: standard
371s Setting up Verlet run ...
371s   Unit style    : lj
371s   Current step  : 0
371s   Time step     : 0.001
371s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes
371s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
371s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014355674   -0.00025875943  9.8684199      0             -0.004855272    2.3793218      0.0041072261 
371s       1000   0.010142951    0.015199212   -2.1715786     -4183.8734      129.07448      58.487036      8.3141728     -4.1817171      0.93612119     23.511325      3.7371582    
371s       2000   0.37217696     0.55770718    -5.501671      -1113.5078      12.361734      0.56717221     9.4220234     -1.1085639     -0.39798945     13.397419      0.62811105   
372s       3000   0.52025677     0.77960476    -3.8549126     -3288.4446      57.946721      16.7702        8.5666574     -3.2853693     -0.20934692     17.195254      2.2940268    
372s       4000   0.52000674     0.77923009    -4.0042813     -3180.1686      42.281055      5.2538452      8.5173574     -3.1769436     -0.37279124     14.42108       1.9958424    
372s       5000   0.26632329     0.39908545    -5.1559109     -1725.4657      25.17764       3.3288258      8.8480337     -1.7207089     -0.22616494     12.779441      1.3411624    
373s       6000   0.14673418     0.21988117    -3.7657368     -1845.8673      60.573444      14.615699      8.242708      -1.8423215      0.21289355     15.752155      2.6177037    
373s       7000   0.085950705    0.12879713    -5.1644144     -1924.7174      30.48448       5.8732723      8.6787408     -1.9196818     -0.010600412    13.03827       1.5916113    
374s       8000   0.040267888    0.060341431   -4.7547111     -1486.1603      41.506923      9.5593428      8.4878924     -1.4814659      0.11935469     14.137029      1.9986677    
374s       9000   0.025458786    0.038149991   -4.5523455     -1642.5001      44.838555      9.9866475      8.4152155     -1.6379859      0.15016793     14.325688      2.1306608    
374s      10000   0.013645992    0.020448519   -5.2852664     -2425.1699      28.141793      5.1524388      8.6994187     -2.419905       0.02671273     12.635999      1.516074     
374s Loop time of 3.61 on 2 procs for 10000 steps with 1000 atoms
374s 
374s Performance: 239335.302 tau/day, 2770.085 timesteps/s, 2.770 Matom-step/s
374s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads
374s 
374s MPI task timing breakdown:
374s Section |  min time  |  avg time  |  max time  |%varavg| %total
374s ---------------------------------------------------------------
374s Pair    | 2.1797     | 2.2174     | 2.2551     |   2.5 | 61.42
374s Neigh   | 0.086015   | 0.088854   | 0.091693   |   1.0 |  2.46
374s Comm    | 0.45158    | 0.49021    | 0.52883    |   5.5 | 13.58
374s Output  | 0.0010719  | 0.0011464  | 0.0012208  |   0.2 |  0.03
374s Modify  | 0.70984    | 0.71293    | 0.71602    |   0.4 | 19.75
374s Other   |            | 0.09946    |            |       |  2.76
374s 
374s Nlocal:            500 ave         510 max         490 min
374s Histogram: 1 0 0 0 0 0 0 0 0 1
374s Nghost:         1351.5 ave        1357 max        1346 min
374s Histogram: 1 0 0 0 0 0 0 0 0 1
374s Neighs:        10160.5 ave       10780 max        9541 min
374s Histogram: 1 0 0 0 0 0 0 0 0 1
374s 
374s Total # of neighbors = 20321
374s Ave neighs/atom = 20.321
374s Neighbor list builds = 194
374s Dangerous builds = 0
374s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
374s   using 1 OpenMP thread(s) per MPI task
374s Reading restart file ...
374s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
374s   restoring atom style atomic from restart
374s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
374s   1 by 1 by 2 MPI processor grid
374s   restoring pair style lj/cubic from restart
374s   1000 atoms
374s   read_restart CPU = 0.001 seconds
374s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
374s Neighbor list info ...
374s   update: every = 1 steps, delay = 0 steps, check = yes
374s   max neighbors/atom: 2000, page size: 100000
374s   master list distance cutoff = 1.7475372
374s   ghost atom cutoff = 1.7475372
374s   binsize = 0.87376862, bins = 8 12 12
374s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
374s   (1) pair lj/cubic, perpetual
374s       attributes: half, newton on
374s       pair build: half/bin/atomonly/newton
374s       stencil: half/bin/3d
374s       bin: standard
374s Setting up Verlet run ...
374s   Unit style    : lj
374s   Current step  : 0
374s   Time step     : 0.001
374s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes
374s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
374s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014355674   -0.00025875943  9.8684199      0             -0.004855272    2.3793218      0.0041072261 
375s       1000   0.0062486434   0.0093635921  -5.9891167     -1670.9585      18.915821      7.5825014      9.233799      -1.6649788      0.023420172    13.975961      0.92134379   
375s       2000   0.0067916638   0.010177308   -5.4565133     -2537.9542      37.064222      15.536207      8.949588      -2.5325079      0.10233218     16.324942      1.5455443    
375s       3000   0.0073287622   0.01098215    -5.3664364     -2643.9475      39.90842       16.808813      8.915463      -2.638592       0.11823484     16.639094      1.6327251    
376s       4000   0.0070205928   0.010520358   -5.3625886     -2655.7942      40.007504      16.850221      8.9144166     -2.6504422      0.11869019     16.650758      1.6356322    
376s       5000   0.007504613    0.011245663   -5.3630526     -2664.53        39.995767      16.844528      8.9145098     -2.6591782      0.11842922     16.649115      1.6353137    
376s       6000   0.0076250338   0.011426113   -5.3627977     -2673.3599      39.995632      16.842795      8.9145438     -2.6680085      0.11826685     16.649378      1.6352823    
377s       7000   0.0075689977   0.011342143   -5.3621825     -2682.2145      40.003065      16.845001      8.9145477     -2.6768636      0.11817069     16.650959      1.6354309    
377s       8000   0.0078519894   0.011766206   -5.3620929     -2691.0711      39.995512      16.838121      8.9145618     -2.6857208      0.11790857     16.649508      1.6352647    
377s       9000   0.0084026053   0.012591304   -5.3624375     -2700.1249      40.00216       16.845103      8.9145931     -2.694775       0.11780799     16.65116       1.6353742    
378s      10000   0.0087571135   0.013122535   -5.3624901     -2708.9831      39.996386      16.840912      8.9146292     -2.7036337      0.11756735     16.650267      1.6352259    
378s Loop time of 3.35807 on 2 procs for 10000 steps with 1000 atoms
378s 
378s Performance: 257290.436 tau/day, 2977.899 timesteps/s, 2.978 Matom-step/s
378s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads
378s 
378s MPI task timing breakdown:
378s Section |  min time  |  avg time  |  max time  |%varavg| %total
378s ---------------------------------------------------------------
378s Pair    | 1.9519     | 1.9634     | 1.9749     |   0.8 | 58.47
378s Neigh   | 0.0046289  | 0.0046332  | 0.0046376  |   0.0 |  0.14
378s Comm    | 0.473      | 0.48516    | 0.49733    |   1.7 | 14.45
378s Output  | 0.0011803  | 0.0013012  | 0.0014221  |   0.3 |  0.04
378s Modify  | 0.80239    | 0.8034     | 0.80441    |   0.1 | 23.92
378s Other   |            | 0.1002     |            |       |  2.98
378s 
378s Nlocal:            500 ave         503 max         497 min
378s Histogram: 1 0 0 0 0 0 0 0 0 1
378s Nghost:           1214 ave        1217 max        1211 min
378s Histogram: 1 0 0 0 0 0 0 0 0 1
378s Neighs:          10500 ave       10560 max       10440 min
378s Histogram: 1 0 0 0 0 0 0 0 0 1
378s 
378s Total # of neighbors = 21000
378s Ave neighs/atom = 21
378s Neighbor list builds = 10
378s Dangerous builds = 0
378s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
378s   using 1 OpenMP thread(s) per MPI task
378s Reading restart file ...
378s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
378s   restoring atom style atomic from restart
378s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
378s   1 by 1 by 2 MPI processor grid
378s   restoring pair style lj/cubic from restart
378s   1000 atoms
378s   read_restart CPU = 0.001 seconds
378s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
378s Neighbor list info ...
378s   update: every = 1 steps, delay = 0 steps, check = yes
378s   max neighbors/atom: 2000, page size: 100000
378s   master list distance cutoff = 1.7475372
378s   ghost atom cutoff = 1.7475372
378s   binsize = 0.87376862, bins = 8 12 12
378s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
378s   (1) pair lj/cubic, perpetual
378s       attributes: half, newton on
378s       pair build: half/bin/atomonly/newton
378s       stencil: half/bin/3d
378s       bin: standard
378s Setting up Verlet run ...
378s   Unit style    : lj
378s   Current step  : 0
378s   Time step     : 0.001
378s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes
378s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
378s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014355674   -0.00025875943  9.8684199      0             -0.004855272    2.3793218      0.0041072261 
378s       1000   0.0081680995   0.012239897   -5.502183      -838.86998      35.611847      14.887133      8.9677725     -0.83338004     0.093826643    16.159657      1.5001702    
378s       2000   0.019411571    0.02908824    -5.2936173     -1019.8648      41.786268      17.574468      8.8958707     -1.0146003      0.11822851     16.856679      1.6874844    
379s       3000   0.047493358    0.071168797   -5.3442104     -973.41424      39.063178      16.131155      8.932271      -0.9681412      0.073773934    16.606449      1.6012863    
379s       4000   0.11967749     0.17933672    -5.2091216     -1305.4423      40.847348      16.439268      8.9207902     -1.3004125      0.017533293    16.880106      1.647278     
379s       5000   0.1321076      0.19796323    -5.2602273     -1221.8186      39.035827      15.56534       8.9413169     -1.2167564     -0.00091184948  16.679969      1.5931121    
380s       6000   0.14696328     0.22022448    -5.1837201     -1395.6748      40.850308      16.268271      8.9221523     -1.3907113     -0.0051917075   16.892648      1.6461742    
380s       7000   0.12077248     0.18097755    -5.2583118     -1181.0031      39.190631      15.648852      8.9380865     -1.1759258      0.0072501862   16.684492      1.5989963    
380s       8000   0.14329465     0.21472703    -5.1714516     -1352.4587      40.863939      16.196848      8.9218327     -1.347502      -0.0071500832   16.892664      1.646722     
381s       9000   0.12213842     0.18302442    -5.259117      -1191.6806      39.213345      15.658699      8.9368295     -1.1866045      0.0076494093   16.678266      1.6005204    
381s      10000   0.1480674      0.221879      -5.1796888     -1362.5622      40.676046      16.107317      8.9229551     -1.3576044     -0.0093926147   16.863607      1.6419747    
381s Loop time of 3.48767 on 2 procs for 10000 steps with 1000 atoms
381s 
381s Performance: 247729.731 tau/day, 2867.242 timesteps/s, 2.867 Matom-step/s
381s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads
381s 
381s MPI task timing breakdown:
381s Section |  min time  |  avg time  |  max time  |%varavg| %total
381s ---------------------------------------------------------------
381s Pair    | 2.0021     | 2.0108     | 2.0195     |   0.6 | 57.65
381s Neigh   | 0.040845   | 0.041114   | 0.041383   |   0.1 |  1.18
381s Comm    | 0.4911     | 0.50036    | 0.50961    |   1.3 | 14.35
381s Output  | 0.0012407  | 0.0013413  | 0.0014419  |   0.3 |  0.04
381s Modify  | 0.81837    | 0.82189    | 0.82541    |   0.4 | 23.57
381s Other   |            | 0.1122     |            |       |  3.22
381s 
381s Nlocal:            500 ave         503 max         497 min
381s Histogram: 1 0 0 0 0 0 0 0 0 1
381s Nghost:         1217.5 ave        1219 max        1216 min
381s Histogram: 1 0 0 0 0 0 0 0 0 1
381s Neighs:          10291 ave       10353 max       10229 min
381s Histogram: 1 0 0 0 0 0 0 0 0 1
381s 
381s Total # of neighbors = 20582
381s Ave neighs/atom = 20.582
381s Neighbor list builds = 89
381s Dangerous builds = 0
381s Total wall time: 0:00:10
381s LAMMPS (4 Feb 2025)
381s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
381s   using 1 OpenMP thread(s) per MPI task
381s Lattice spacing in x,y,z = 1.4142135 2 2
381s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999)
381s   1 by 1 by 1 MPI processor grid
381s Created 1000 atoms
381s   using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999)
381s   create_atoms CPU = 0.000 seconds
381s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
381s Neighbor list info ...
381s   update: every = 1 steps, delay = 0 steps, check = yes
381s   max neighbors/atom: 2000, page size: 100000
381s   master list distance cutoff = 1.8475372
381s   ghost atom cutoff = 1.8475372
381s   binsize = 0.92376862, bins = 8 11 11
381s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
381s   (1) pair lj/cubic, perpetual
381s       attributes: half, newton on
381s       pair build: half/bin/atomonly/newton
381s       stencil: half/bin/3d
381s       bin: standard
381s Setting up cg style minimization ...
381s   Unit style    : lj
381s   Current step  : 0
381s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies
381s  (src/min.cpp:219)
381s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes
381s    Step          Temp          PotEng         TotEng          Pxx            Pyy            Pzz             Lx             Ly             Lz      
381s          0   0             -6.2937536     -6.2937536     -2.7722424     -2.7722424     -2.7722424      7.0710677      9.9999999      9.9999999    
381s        100   0             -6.3319014     -6.3319014     -0.75971257    -0.75971257    -0.75971257     7.0003571      9.8999999      9.8999999    
381s        134   0             -6.3344253     -6.3344253     -4.3330648e-13 -4.7530261e-13 -4.7130069e-13  6.9780267      9.8684199      9.8684199    
381s Loop time of 0.0630789 on 1 procs for 134 steps with 1000 atoms
381s 
381s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads
381s 
381s Minimization stats:
381s   Stopping criterion = force tolerance
381s   Energy initial, next-to-last, final = 
381s      -6.29375358358557  -6.33442531515503  -6.33442531515503
381s   Force two-norm initial, final = 3395.2895 5.5740327e-10
381s   Force max component initial, final = 1960.2713 3.2730334e-10
381s   Final line search alpha, max atom move = 1 3.2730334e-10
381s   Iterations, force evaluations = 134 137
381s 
381s MPI task timing breakdown:
381s Section |  min time  |  avg time  |  max time  |%varavg| %total
381s ---------------------------------------------------------------
381s Pair    | 0.04852    | 0.04852    | 0.04852    |   0.0 | 76.92
381s Neigh   | 0.00081302 | 0.00081302 | 0.00081302 |   0.0 |  1.29
381s Comm    | 0.0015591  | 0.0015591  | 0.0015591  |   0.0 |  2.47
381s Output  | 0.00012312 | 0.00012312 | 0.00012312 |   0.0 |  0.20
381s Modify  | 0          | 0          | 0          |   0.0 |  0.00
381s Other   |            | 0.01206    |            |       | 19.13
381s 
381s Nlocal:           1000 ave        1000 max        1000 min
381s Histogram: 1 0 0 0 0 0 0 0 0 0
381s Nghost:           1724 ave        1724 max        1724 min
381s Histogram: 1 0 0 0 0 0 0 0 0 0
381s Neighs:          21000 ave       21000 max       21000 min
381s Histogram: 1 0 0 0 0 0 0 0 0 0
381s 
381s Total # of neighbors = 21000
381s Ave neighs/atom = 21
381s Neighbor list builds = 1
381s Dangerous builds = 0
381s System init for write_restart ...
381s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
381s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
381s   using 1 OpenMP thread(s) per MPI task
381s Reading restart file ...
381s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
381s   restoring atom style atomic from restart
381s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
381s   1 by 1 by 1 MPI processor grid
381s   restoring pair style lj/cubic from restart
381s   1000 atoms
381s   read_restart CPU = 0.001 seconds
381s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
381s Neighbor list info ...
381s   update: every = 1 steps, delay = 0 steps, check = yes
381s   max neighbors/atom: 2000, page size: 100000
381s   master list distance cutoff = 1.7475372
381s   ghost atom cutoff = 1.7475372
381s   binsize = 0.87376862, bins = 8 12 12
381s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
381s   (1) pair lj/cubic, perpetual
381s       attributes: half, newton on
381s       pair build: half/bin/atomonly/newton
381s       stencil: half/bin/3d
381s       bin: standard
381s Setting up Verlet run ...
381s   Unit style    : lj
381s   Current step  : 0
381s   Time step     : 0.001
381s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes
381s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
381s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014381062   -0.00023971829  9.8684199      0             -0.004855267    2.3814248      0.0041108563 
382s       1000   0.0093381492   0.013993217   -2.1704431     -4183.8284      129.15284      58.544409      8.3142517     -4.1816719      0.93744212     23.519052      3.7381985    
382s       2000   0.24794859     0.37155095    -5.8915826     -528.38691      8.3849811      1.3744297      9.5938806     -0.52286688    -0.24350394     13.910493      0.41033425   
383s       3000   0.3892042      0.5832225     -3.7686896     -3442.3257      72.742382      28.486576      8.6238082     -3.4391402      0.0038227739   19.697354      2.5139569    
383s       4000   0.67010303     1.0041494     -4.2080956     -2935.8105      35.596234      3.9346859      8.7508489     -2.9326065     -0.58038927     14.529876      1.6677093    
384s       5000   0.41845028     0.62704774    -4.8392822     -1894.6664      30.624319      4.6370699      8.7827304     -1.8904542     -0.31998377     13.670423      1.5249748    
385s       6000   0.22409652     0.33580864    -3.7653422     -2666.4156      50.804071      7.220865       8.25496       -2.6629861     -0.017448126    14.48017       2.3883779    
385s       7000   0.094832866    0.14210705    -4.5432169     -2337.0271      35.853414      3.4750842      8.4475655     -2.332626      -0.052659776    12.95347       1.8841809    
386s       8000   0.043338745    0.06494311    -4.6249403     -1687.4892      39.679004      6.7256868      8.4321684     -1.6829292      0.070571417    13.554654      1.9927395    
386s       9000   0.018233343    0.027322664   -4.425909      -1916.4941      41.680023      5.9079935      8.3470382     -1.9120955      0.090887676    13.502397      2.1013348    
387s      10000   0.0082616415   0.01238007    -4.6221264     -1723.6542      39.842157      6.5678795      8.41093       -1.7190444      0.099616538    13.484322      2.0113699    
387s Loop time of 5.47165 on 1 procs for 10000 steps with 1000 atoms
387s 
387s Performance: 157904.968 tau/day, 1827.604 timesteps/s, 1.828 Matom-step/s
387s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads
387s 
387s MPI task timing breakdown:
387s Section |  min time  |  avg time  |  max time  |%varavg| %total
387s ---------------------------------------------------------------
387s Pair    | 4.3969     | 4.3969     | 4.3969     |   0.0 | 80.36
387s Neigh   | 0.16802    | 0.16802    | 0.16802    |   0.0 |  3.07
387s Comm    | 0.11815    | 0.11815    | 0.11815    |   0.0 |  2.16
387s Output  | 0.0010864  | 0.0010864  | 0.0010864  |   0.0 |  0.02
387s Modify  | 0.69558    | 0.69558    | 0.69558    |   0.0 | 12.71
387s Other   |            | 0.09189    |            |       |  1.68
387s 
387s Nlocal:           1000 ave        1000 max        1000 min
387s Histogram: 1 0 0 0 0 0 0 0 0 0
387s Nghost:           1886 ave        1886 max        1886 min
387s Histogram: 1 0 0 0 0 0 0 0 0 0
387s Neighs:          20874 ave       20874 max       20874 min
387s Histogram: 1 0 0 0 0 0 0 0 0 0
387s 
387s Total # of neighbors = 20874
387s Ave neighs/atom = 20.874
387s Neighbor list builds = 188
387s Dangerous builds = 0
387s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
387s   using 1 OpenMP thread(s) per MPI task
387s Reading restart file ...
387s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
387s   restoring atom style atomic from restart
387s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
387s   1 by 1 by 1 MPI processor grid
387s   restoring pair style lj/cubic from restart
387s   1000 atoms
387s   read_restart CPU = 0.000 seconds
387s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
387s Neighbor list info ...
387s   update: every = 1 steps, delay = 0 steps, check = yes
387s   max neighbors/atom: 2000, page size: 100000
387s   master list distance cutoff = 1.7475372
387s   ghost atom cutoff = 1.7475372
387s   binsize = 0.87376862, bins = 8 12 12
387s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
387s   (1) pair lj/cubic, perpetual
387s       attributes: half, newton on
387s       pair build: half/bin/atomonly/newton
387s       stencil: half/bin/3d
387s       bin: standard
387s Setting up Verlet run ...
387s   Unit style    : lj
387s   Current step  : 0
387s   Time step     : 0.001
387s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes
387s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
387s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014381062   -0.00023971829  9.8684199      0             -0.004855267    2.3814248      0.0041108563 
387s       1000   0.0062572988   0.0093765623  -5.989087      -1670.9191      18.918118      7.5844401      9.2338165     -1.6649394      0.023419337    13.976997      0.92138738   
388s       2000   0.0068451081   0.010257394   -5.456581      -2537.81        37.064253      15.537266      8.9496405     -2.5323637      0.10230605     16.325406      1.5455016    
388s       3000   0.0073276099   0.010980423   -5.3663421     -2643.8751      39.907292      16.807489      8.9154852     -2.6385198      0.11818116     16.63905       1.6326832    
389s       4000   0.0069296906   0.010384141   -5.36234       -2655.7228      40.010742      16.851482      8.9144328     -2.6503709      0.11868137     16.651571      1.6356847    
389s       5000   0.0076142461   0.011409948   -5.3631443     -2664.4499      39.997648      16.846756      8.9145416     -2.6590982      0.1184114      16.649779      1.6353254    
390s       6000   0.0077053831   0.011546517   -5.3628538     -2673.2444      39.991598      16.840314      8.9145803     -2.667893       0.11818361     16.648852      1.6351691    
390s       7000   0.0077405663   0.011599239   -5.3623531     -2682.1589      40.000448      16.844009      8.9145774     -2.6768081      0.11809899     16.650669      1.6353525    
391s       8000   0.0080673569   0.012088934   -5.3623755     -2691.0104      39.995327      16.840134      8.9146099     -2.6856601      0.11787103     16.649882      1.6352204    
391s       9000   0.0083223083   0.012470979   -5.3622988     -2699.8929      40.00571       16.847764      8.9146503     -2.6945431      0.11781523     16.652389      1.6353987    
392s      10000   0.0091249116   0.01367368    -5.3630138     -2708.966       39.987197      16.837314      8.9146848     -2.7036167      0.11743014     16.648832      1.6349911    
392s Loop time of 4.88525 on 1 procs for 10000 steps with 1000 atoms
392s 
392s Performance: 176858.810 tau/day, 2046.977 timesteps/s, 2.047 Matom-step/s
392s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads
392s 
392s MPI task timing breakdown:
392s Section |  min time  |  avg time  |  max time  |%varavg| %total
392s ---------------------------------------------------------------
392s Pair    | 3.9563     | 3.9563     | 3.9563     |   0.0 | 80.99
392s Neigh   | 0.0098388  | 0.0098388  | 0.0098388  |   0.0 |  0.20
392s Comm    | 0.10128    | 0.10128    | 0.10128    |   0.0 |  2.07
392s Output  | 0.0013115  | 0.0013115  | 0.0013115  |   0.0 |  0.03
392s Modify  | 0.72869    | 0.72869    | 0.72869    |   0.0 | 14.92
392s Other   |            | 0.08779    |            |       |  1.80
392s 
392s Nlocal:           1000 ave        1000 max        1000 min
392s Histogram: 1 0 0 0 0 0 0 0 0 0
392s Nghost:           1724 ave        1724 max        1724 min
392s Histogram: 1 0 0 0 0 0 0 0 0 0
392s Neighs:          21000 ave       21000 max       21000 min
392s Histogram: 1 0 0 0 0 0 0 0 0 0
392s 
392s Total # of neighbors = 21000
392s Ave neighs/atom = 21
392s Neighbor list builds = 11
392s Dangerous builds = 0
392s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
392s   using 1 OpenMP thread(s) per MPI task
392s Reading restart file ...
392s   restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025
392s   restoring atom style atomic from restart
392s   orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099)
392s   1 by 1 by 1 MPI processor grid
392s   restoring pair style lj/cubic from restart
392s   1000 atoms
392s   read_restart CPU = 0.001 seconds
392s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
392s Neighbor list info ...
392s   update: every = 1 steps, delay = 0 steps, check = yes
392s   max neighbors/atom: 2000, page size: 100000
392s   master list distance cutoff = 1.7475372
392s   ghost atom cutoff = 1.7475372
392s   binsize = 0.87376862, bins = 8 12 12
392s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
392s   (1) pair lj/cubic, perpetual
392s       attributes: half, newton on
392s       pair build: half/bin/atomonly/newton
392s       stencil: half/bin/3d
392s       bin: standard
392s Setting up Verlet run ...
392s   Unit style    : lj
392s   Current step  : 0
392s   Time step     : 0.001
392s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes
392s    Step          Temp          KinEng         E_pair       Econserve         Pzz           v_tau            Lz          f_myhug         v_dele          v_us           v_up     
392s          0   0.01           0.014985      -6.3344253     -6.3194403      0.014381062   -0.00023971829  9.8684199      0             -0.004855267    2.3814248      0.0041108563 
392s       1000   0.0083300318   0.012482553   -5.5023183     -838.99233      35.610078      14.886668      8.9677982     -0.83350249     0.093761717    16.159482      1.500112     
393s       2000   0.020386436    0.030549075   -5.294934      -1021.4347      41.760404      17.563313      8.8960328     -1.0161703      0.1178086      16.852842      1.6868239    
393s       3000   0.049693082    0.074465084   -5.3469418     -982.1922       39.030412      16.123502      8.9325589     -0.97691972     0.073097533    16.601991      1.6003728    
394s       4000   0.11859524     0.17771497    -5.207074      -1299.948       40.941639      16.507821      8.9213137     -1.2949186      0.018189971    16.904165      1.6487306    
394s       5000   0.130146       0.19502378    -5.261025      -1208.3405      39.059595      15.609328      8.9431689     -1.2032745     -0.00023811036  16.701434      1.5920334    
395s       6000   0.13812959     0.20698719    -5.1710048     -1334.1421      40.904888      16.242199      8.9222846     -1.329178      -0.0044756362   16.90509       1.6471606    
395s       7000   0.12107441     0.18143001    -5.2602562     -1170.0585      39.060849      15.577606      8.9397535     -1.1649797      0.005587398    16.671517      1.5949415    
396s       8000   0.14333426     0.21478639    -5.1717109     -1352.635       40.876285      16.205871      8.9218128     -1.3476781     -0.0069373292   16.895041      1.6469877    
396s       9000   0.12159783     0.18221435    -5.2591928     -1186.8604      39.22852       15.6778        8.9376658     -1.1817834      0.0077335044   16.68885       1.6001243    
397s      10000   0.15321647     0.22959488    -5.188176      -1391.2245      40.666599      16.146259      8.9228489     -1.3862659     -0.0091900905   16.860718      1.6418747    
397s Loop time of 5.03297 on 1 procs for 10000 steps with 1000 atoms
397s 
397s Performance: 171667.988 tau/day, 1986.898 timesteps/s, 1.987 Matom-step/s
397s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads
397s 
397s MPI task timing breakdown:
397s Section |  min time  |  avg time  |  max time  |%varavg| %total
397s ---------------------------------------------------------------
397s Pair    | 3.9943     | 3.9943     | 3.9943     |   0.0 | 79.36
397s Neigh   | 0.085641   | 0.085641   | 0.085641   |   0.0 |  1.70
397s Comm    | 0.10868    | 0.10868    | 0.10868    |   0.0 |  2.16
397s Output  | 0.0018786  | 0.0018786  | 0.0018786  |   0.0 |  0.04
397s Modify  | 0.74906    | 0.74906    | 0.74906    |   0.0 | 14.88
397s Other   |            | 0.09338    |            |       |  1.86
397s 
397s Nlocal:           1000 ave        1000 max        1000 min
397s Histogram: 1 0 0 0 0 0 0 0 0 0
397s Nghost:           1724 ave        1724 max        1724 min
397s Histogram: 1 0 0 0 0 0 0 0 0 0
397s Neighs:          20654 ave       20654 max       20654 min
397s Histogram: 1 0 0 0 0 0 0 0 0 0
397s 
397s Total # of neighbors = 20654
397s Ave neighs/atom = 20.654
397s Neighbor list builds = 94
397s Dangerous builds = 0
397s Total wall time: 0:00:15
397s run: OK
397s autopkgtest [01:15:43]: test hugo: -----------------------]
401s hugo                 PASS
401s autopkgtest [01:15:47]: test hugo:  - - - - - - - - - - results - - - - - - - - - -
405s autopkgtest [01:15:51]: test command1: preparing testbed
428s autopkgtest [01:16:14]: testbed dpkg architecture: armhf
430s autopkgtest [01:16:16]: testbed apt version: 3.1.6ubuntu2
434s autopkgtest [01:16:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
436s autopkgtest [01:16:22]: testbed release detected to be: resolute
443s autopkgtest [01:16:29]: updating testbed package index (apt update)
445s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB]
445s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [83.3 kB]
446s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
446s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
446s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [51.0 kB]
446s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [450 kB]
446s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B]
446s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB]
446s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [95.4 kB]
446s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B]
446s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [264 kB]
446s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [5192 B]
446s Get:13 http://ftpmaster.internal/ubuntu resolute/restricted Sources [14.4 kB]
446s Get:14 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.1 MB]
448s Get:15 http://ftpmaster.internal/ubuntu resolute/main Sources [1400 kB]
448s Get:16 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [307 kB]
448s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1357 kB]
448s Get:18 http://ftpmaster.internal/ubuntu resolute/restricted armhf Packages [1672 B]
448s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.0 MB]
448s Get:20 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [182 kB]
451s Fetched 40.4 MB in 6s (6561 kB/s)
452s Reading package lists...
458s autopkgtest [01:16:44]: upgrading testbed (apt dist-upgrade and autopurge)
460s Reading package lists...
460s Building dependency tree...
460s Reading state information...
461s Calculating upgrade...
461s The following packages will be upgraded:
461s   apparmor apt base-files binutils binutils-arm-linux-gnueabihf
461s   binutils-common cloud-init cloud-init-base distro-info-data dpkg dpkg-dev
461s   gcc-15-base gir1.2-girepository-2.0 libapparmor1 libapt-pkg7.0 libatomic1
461s   libaudit-common libaudit1 libbinutils libcap-ng0 libctf-nobfd0 libctf0
461s   libdpkg-perl libgcc-s1 libgirepository-1.0-1 libnewt0.52 libnftables1
461s   libp11-kit0 libseccomp2 libsemanage-common libsemanage2 libsframe2
461s   libstdc++6 lto-disabled-list nftables python-apt-common python3-apt
461s   python3-cffi-backend sudo-rs whiptail
461s 40 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
461s Need to get 11.2 MB of archives.
461s After this operation, 574 kB of additional disk space will be used.
461s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf base-files armhf 14ubuntu4 [75.4 kB]
462s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libatomic1 armhf 15.2.0-5ubuntu1 [7942 B]
462s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-base armhf 15.2.0-5ubuntu1 [58.1 kB]
462s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-s1 armhf 15.2.0-5ubuntu1 [40.6 kB]
462s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++6 armhf 15.2.0-5ubuntu1 [731 kB]
462s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libapt-pkg7.0 armhf 3.1.8ubuntu1 [1148 kB]
462s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf dpkg armhf 1.22.21ubuntu4 [1245 kB]
462s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf libseccomp2 armhf 2.6.0-2ubuntu3 [53.5 kB]
462s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf apt armhf 3.1.8ubuntu1 [1404 kB]
462s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libaudit-common all 1:4.0.5-1build2 [6596 B]
462s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libcap-ng0 armhf 0.8.5-4build3 [14.0 kB]
462s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libaudit1 armhf 1:4.0.5-1build2 [51.7 kB]
462s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libsemanage-common all 3.8.1-1build1 [7916 B]
462s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libsemanage2 armhf 3.8.1-1build1 [89.2 kB]
462s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf distro-info-data all 0.68 [7378 B]
462s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libgirepository-1.0-1 armhf 1.86.0-6 [111 kB]
462s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf gir1.2-girepository-2.0 armhf 1.86.0-6 [25.3 kB]
462s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libapparmor1 armhf 5.0.0~alpha1-0ubuntu8.1 [52.9 kB]
462s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libnewt0.52 armhf 0.52.25-1ubuntu2 [39.9 kB]
462s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libp11-kit0 armhf 0.25.9-2 [265 kB]
462s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf python-apt-common all 3.0.0ubuntu2 [21.7 kB]
462s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf python3-apt armhf 3.0.0ubuntu2 [189 kB]
462s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cffi-backend armhf 1.17.1-3build1 [98.4 kB]
462s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf sudo-rs armhf 0.2.8-1ubuntu5.1 [548 kB]
462s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf whiptail armhf 0.52.25-1ubuntu2 [17.1 kB]
462s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf apparmor armhf 5.0.0~alpha1-0ubuntu8.1 [631 kB]
462s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf nftables armhf 1.1.5-2 [73.2 kB]
462s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libnftables1 armhf 1.1.5-2 [329 kB]
462s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libctf0 armhf 2.45-7ubuntu2 [75.7 kB]
462s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libctf-nobfd0 armhf 2.45-7ubuntu2 [79.1 kB]
462s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf binutils-arm-linux-gnueabihf armhf 2.45-7ubuntu2 [1022 kB]
462s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libbinutils armhf 2.45-7ubuntu2 [411 kB]
462s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf binutils armhf 2.45-7ubuntu2 [3240 B]
462s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf binutils-common armhf 2.45-7ubuntu2 [220 kB]
462s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libsframe2 armhf 2.45-7ubuntu2 [13.4 kB]
462s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf cloud-init-base all 25.3-0ubuntu1 [625 kB]
462s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf cloud-init all 25.3-0ubuntu1 [2106 B]
462s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf dpkg-dev all 1.22.21ubuntu4 [1088 kB]
463s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libdpkg-perl all 1.22.21ubuntu4 [280 kB]
463s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf lto-disabled-list all 71 [12.5 kB]
463s Preconfiguring packages ...
463s Fetched 11.2 MB in 1s (9557 kB/s)
463s (Reading database ... 
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463s Preparing to unpack .../base-files_14ubuntu4_armhf.deb ...
463s Unpacking base-files (14ubuntu4) over (14ubuntu3) ...
463s Setting up base-files (14ubuntu4) ...
463s Installing new version of config file /etc/issue ...
463s Installing new version of config file /etc/issue.net ...
463s Installing new version of config file /etc/lsb-release ...
464s motd-news.service is a disabled or a static unit not running, not starting it.
464s (Reading database ... 
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464s Preparing to unpack .../libatomic1_15.2.0-5ubuntu1_armhf.deb ...
464s Unpacking libatomic1:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
464s Preparing to unpack .../gcc-15-base_15.2.0-5ubuntu1_armhf.deb ...
464s Unpacking gcc-15-base:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
464s Setting up gcc-15-base:armhf (15.2.0-5ubuntu1) ...
465s (Reading database ... 
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465s Preparing to unpack .../libgcc-s1_15.2.0-5ubuntu1_armhf.deb ...
465s Unpacking libgcc-s1:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
465s Setting up libgcc-s1:armhf (15.2.0-5ubuntu1) ...
465s (Reading database ... 
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465s Preparing to unpack .../libstdc++6_15.2.0-5ubuntu1_armhf.deb ...
465s Unpacking libstdc++6:armhf (15.2.0-5ubuntu1) over (15.2.0-4ubuntu4) ...
465s Setting up libstdc++6:armhf (15.2.0-5ubuntu1) ...
465s (Reading database ... 
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465s Preparing to unpack .../libapt-pkg7.0_3.1.8ubuntu1_armhf.deb ...
465s Unpacking libapt-pkg7.0:armhf (3.1.8ubuntu1) over (3.1.6ubuntu2) ...
465s Setting up libapt-pkg7.0:armhf (3.1.8ubuntu1) ...
465s (Reading database ... 
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465s Preparing to unpack .../dpkg_1.22.21ubuntu4_armhf.deb ...
465s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
465s Setting up dpkg (1.22.21ubuntu4) ...
466s (Reading database ... 
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466s Preparing to unpack .../libseccomp2_2.6.0-2ubuntu3_armhf.deb ...
466s Unpacking libseccomp2:armhf (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ...
466s Setting up libseccomp2:armhf (2.6.0-2ubuntu3) ...
466s (Reading database ... 
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466s Preparing to unpack .../apt_3.1.8ubuntu1_armhf.deb ...
466s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ...
466s Setting up apt (3.1.8ubuntu1) ...
467s (Reading database ... 
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467s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ...
467s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ...
467s Setting up libaudit-common (1:4.0.5-1build2) ...
467s (Reading database ... 
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467s Preparing to unpack .../libcap-ng0_0.8.5-4build3_armhf.deb ...
467s Unpacking libcap-ng0:armhf (0.8.5-4build3) over (0.8.5-4build2) ...
467s Setting up libcap-ng0:armhf (0.8.5-4build3) ...
467s (Reading database ... 
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467s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_armhf.deb ...
467s Unpacking libaudit1:armhf (1:4.0.5-1build2) over (1:4.0.5-1build1) ...
467s Setting up libaudit1:armhf (1:4.0.5-1build2) ...
467s (Reading database ... 
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467s Preparing to unpack .../libsemanage-common_3.8.1-1build1_all.deb ...
467s Unpacking libsemanage-common (3.8.1-1build1) over (3.8.1-1) ...
467s Setting up libsemanage-common (3.8.1-1build1) ...
467s (Reading database ... 
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467s Preparing to unpack .../libsemanage2_3.8.1-1build1_armhf.deb ...
467s Unpacking libsemanage2:armhf (3.8.1-1build1) over (3.8.1-1) ...
467s Setting up libsemanage2:armhf (3.8.1-1build1) ...
467s (Reading database ... 
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467s Preparing to unpack .../00-distro-info-data_0.68_all.deb ...
467s Unpacking distro-info-data (0.68) over (0.66) ...
467s Preparing to unpack .../01-libgirepository-1.0-1_1.86.0-6_armhf.deb ...
467s Unpacking libgirepository-1.0-1:armhf (1.86.0-6) over (1.84.0-1) ...
467s Preparing to unpack .../02-gir1.2-girepository-2.0_1.86.0-6_armhf.deb ...
467s Unpacking gir1.2-girepository-2.0:armhf (1.86.0-6) over (1.84.0-1) ...
467s Preparing to unpack .../03-libapparmor1_5.0.0~alpha1-0ubuntu8.1_armhf.deb ...
467s Unpacking libapparmor1:armhf (5.0.0~alpha1-0ubuntu8.1) over (5.0.0~alpha1-0ubuntu8) ...
467s Preparing to unpack .../04-libnewt0.52_0.52.25-1ubuntu2_armhf.deb ...
467s Unpacking libnewt0.52:armhf (0.52.25-1ubuntu2) over (0.52.25-1ubuntu1) ...
467s Preparing to unpack .../05-libp11-kit0_0.25.9-2_armhf.deb ...
467s Unpacking libp11-kit0:armhf (0.25.9-2) over (0.25.5-3ubuntu1) ...
467s Preparing to unpack .../06-python-apt-common_3.0.0ubuntu2_all.deb ...
467s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ...
468s Preparing to unpack .../07-python3-apt_3.0.0ubuntu2_armhf.deb ...
468s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ...
468s Preparing to unpack .../08-python3-cffi-backend_1.17.1-3build1_armhf.deb ...
468s Unpacking python3-cffi-backend:armhf (1.17.1-3build1) over (1.17.1-3) ...
468s Preparing to unpack .../09-sudo-rs_0.2.8-1ubuntu5.1_armhf.deb ...
468s Unpacking sudo-rs (0.2.8-1ubuntu5.1) over (0.2.8-1ubuntu5) ...
468s Preparing to unpack .../10-whiptail_0.52.25-1ubuntu2_armhf.deb ...
468s Unpacking whiptail (0.52.25-1ubuntu2) over (0.52.25-1ubuntu1) ...
468s Preparing to unpack .../11-apparmor_5.0.0~alpha1-0ubuntu8.1_armhf.deb ...
469s Unpacking apparmor (5.0.0~alpha1-0ubuntu8.1) over (5.0.0~alpha1-0ubuntu8) ...
470s Preparing to unpack .../12-nftables_1.1.5-2_armhf.deb ...
470s Unpacking nftables (1.1.5-2) over (1.1.5-1) ...
470s Preparing to unpack .../13-libnftables1_1.1.5-2_armhf.deb ...
470s Unpacking libnftables1:armhf (1.1.5-2) over (1.1.5-1) ...
470s Preparing to unpack .../14-libctf0_2.45-7ubuntu2_armhf.deb ...
470s Unpacking libctf0:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
470s Preparing to unpack .../15-libctf-nobfd0_2.45-7ubuntu2_armhf.deb ...
470s Unpacking libctf-nobfd0:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
470s Preparing to unpack .../16-binutils-arm-linux-gnueabihf_2.45-7ubuntu2_armhf.deb ...
470s Unpacking binutils-arm-linux-gnueabihf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
470s Preparing to unpack .../17-libbinutils_2.45-7ubuntu2_armhf.deb ...
470s Unpacking libbinutils:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
471s Preparing to unpack .../18-binutils_2.45-7ubuntu2_armhf.deb ...
471s Unpacking binutils (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
471s Preparing to unpack .../19-binutils-common_2.45-7ubuntu2_armhf.deb ...
471s Unpacking binutils-common:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
471s Preparing to unpack .../20-libsframe2_2.45-7ubuntu2_armhf.deb ...
471s Unpacking libsframe2:armhf (2.45-7ubuntu2) over (2.45-7ubuntu1) ...
471s Preparing to unpack .../21-cloud-init-base_25.3-0ubuntu1_all.deb ...
471s Unpacking cloud-init-base (25.3-0ubuntu1) over (25.3~2g890873f5-0ubuntu2) ...
471s Preparing to unpack .../22-cloud-init_25.3-0ubuntu1_all.deb ...
471s Unpacking cloud-init (25.3-0ubuntu1) over (25.3~2g890873f5-0ubuntu2) ...
471s Preparing to unpack .../23-dpkg-dev_1.22.21ubuntu4_all.deb ...
471s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
471s Preparing to unpack .../24-libdpkg-perl_1.22.21ubuntu4_all.deb ...
471s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ...
471s Preparing to unpack .../25-lto-disabled-list_71_all.deb ...
471s Unpacking lto-disabled-list (71) over (69) ...
471s Setting up lto-disabled-list (71) ...
471s Setting up libapparmor1:armhf (5.0.0~alpha1-0ubuntu8.1) ...
471s Setting up libnewt0.52:armhf (0.52.25-1ubuntu2) ...
472s Setting up libnftables1:armhf (1.1.5-2) ...
472s Setting up nftables (1.1.5-2) ...
472s Setting up distro-info-data (0.68) ...
472s Setting up libsframe2:armhf (2.45-7ubuntu2) ...
472s Setting up binutils-common:armhf (2.45-7ubuntu2) ...
472s Setting up libctf-nobfd0:armhf (2.45-7ubuntu2) ...
472s Setting up cloud-init-base (25.3-0ubuntu1) ...
474s Setting up apparmor (5.0.0~alpha1-0ubuntu8.1) ...
474s Installing new version of config file /etc/apparmor.d/fusermount3 ...
474s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
474s 
474s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
474s 
474s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
474s 
475s Reloading AppArmor profiles 
475s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "balena-etcher".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "bwrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "chromium".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "babeld".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "bfdd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "alsamixer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "bgpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "foliate".  /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "eigrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "dnstracer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "fabricd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "hostname".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "dig".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "iotop-c".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "Xorg".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "fusermount3".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "isisd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "john".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ldpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "gs".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "irssi".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lsblk".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "linux-boot-prober".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "compressor".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "locale".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lsusb".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "mbsync".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "mosquitto".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "nslookup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "notify-send".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "nhrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ospf6d".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "nc.openbsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "os-prober".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ospfd".  /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "pim6d".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "pathd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "pbrd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Unable to replace "pimd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "qpdf".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ripngd".  /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ripd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ip".  /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "openvpn".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "proftpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "staticd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "ssh-keyscan".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "tinyproxy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
475s /sbin/apparmor_parser: Unable to replace "systemd-detect-virt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
475s 
476s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "mx-extract".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "rygel".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "cmds".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "tnftp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "dumpcap".  /sbin/apparmor_parser: Unable to replace "/usr/sbin/chronyd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "tshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "wg".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "wike".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "vrrpd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "who".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "ip".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "wg-quick".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "znc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "transmission-cli".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "apt_methods".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_esm_cache".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
476s 
476s Error: At least one profile failed to load
476s Setting up libp11-kit0:armhf (0.25.9-2) ...
476s Setting up libatomic1:armhf (15.2.0-5ubuntu1) ...
476s Setting up libdpkg-perl (1.22.21ubuntu4) ...
476s Setting up whiptail (0.52.25-1ubuntu2) ...
476s Setting up python-apt-common (3.0.0ubuntu2) ...
476s Setting up libgirepository-1.0-1:armhf (1.86.0-6) ...
476s Setting up libbinutils:armhf (2.45-7ubuntu2) ...
476s Setting up sudo-rs (0.2.8-1ubuntu5.1) ...
476s Setting up python3-cffi-backend:armhf (1.17.1-3build1) ...
476s Setting up libctf0:armhf (2.45-7ubuntu2) ...
476s Setting up cloud-init (25.3-0ubuntu1) ...
476s Setting up python3-apt (3.0.0ubuntu2) ...
476s Setting up gir1.2-girepository-2.0:armhf (1.86.0-6) ...
476s Setting up binutils-arm-linux-gnueabihf (2.45-7ubuntu2) ...
476s Setting up binutils (2.45-7ubuntu2) ...
476s Setting up dpkg-dev (1.22.21ubuntu4) ...
476s Processing triggers for procps (2:4.0.4-8ubuntu3) ...
476s Processing triggers for install-info (7.1.1-1ubuntu1) ...
476s Processing triggers for libc-bin (2.42-0ubuntu3) ...
476s Processing triggers for rsyslog (8.2504.0-1ubuntu2) ...
477s Processing triggers for systemd (257.9-0ubuntu2) ...
477s Processing triggers for man-db (2.13.1-1) ...
478s Processing triggers for plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu1) ...
481s Reading package lists...
482s Building dependency tree...
482s Reading state information...
482s Solving dependencies...
483s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
485s autopkgtest [01:17:11]: rebooting testbed after setup commands that affected boot
548s Reading package lists...
548s Building dependency tree...
548s Reading state information...
549s Solving dependencies...
549s The following NEW packages will be installed:
549s   autoconf automake autotools-dev cpp cpp-15 cpp-15-arm-linux-gnueabihf
549s   cpp-arm-linux-gnueabihf fontconfig-config fonts-dejavu-core
549s   fonts-dejavu-mono g++ g++-15 g++-15-arm-linux-gnueabihf
549s   g++-arm-linux-gnueabihf gcc gcc-15 gcc-15-arm-linux-gnueabihf
549s   gcc-arm-linux-gnueabihf gfortran-15 gfortran-15-arm-linux-gnueabihf
549s   hwloc-nox libaec0 libasan8 libblas3 libc-dev-bin libc6-dev libcairo2
549s   libcc1-0 libcrypt-dev libcurl3t64-gnutls libdeflate0 libdouble-conversion3
549s   libdrm-amdgpu1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1
549s   libgcc-15-dev libgfortran-15-dev libgfortran5 libgl1 libgl1-mesa-dri
549s   libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310
549s   libhdf5-hl-310 libhwloc-dev libhwloc15 libisl23 libjbig0 libjpeg-turbo8
549s   libjpeg8 libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 liblapack3
549s   liblerc4 libllvm20 libltdl-dev libltdl7 libmpc3 libmpich-dev libmpich12
549s   libnetcdf22 libnuma-dev libogg0 libopengl0 libpixman-1-0 libproj25
549s   libpython3.13 libsharpyuv0 libslurm42t64 libstdc++-15-dev libsz2 libtbb12
549s   libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6
549s   libtk8.6 libubsan1 libvoro++1 libvtk9.3 libvulkan1 libwebp7 libx11-xcb1
549s   libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0
549s   libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1
549s   libxss1 libxxf86vm1 linux-libc-dev m4 mesa-libgallium mpi-default-bin
549s   mpi-default-dev mpich proj-data python3-lammps rpcsvc-proto x11-common
550s 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded.
550s Need to get 163 MB of archives.
550s After this operation, 549 MB of additional disk space will be used.
550s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf m4 armhf 1.4.19-8 [238 kB]
550s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf autoconf all 2.72-3.1ubuntu1 [384 kB]
550s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf autotools-dev all 20240727.1 [43.4 kB]
550s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf automake all 1:1.17-4ubuntu1 [572 kB]
550s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf libisl23 armhf 0.27-1 [546 kB]
550s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libmpc3 armhf 1.3.1-1build3 [47.2 kB]
550s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-5ubuntu1 [10.1 MB]
551s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-15 armhf 15.2.0-5ubuntu1 [1034 B]
551s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [5756 B]
551s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf cpp armhf 4:15.2.0-4ubuntu1 [22.4 kB]
551s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
551s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
551s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB]
551s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf libcc1-0 armhf 15.2.0-5ubuntu1 [43.6 kB]
551s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-5ubuntu1 [129 kB]
551s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libasan8 armhf 15.2.0-5ubuntu1 [2952 kB]
551s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libubsan1 armhf 15.2.0-5ubuntu1 [1187 kB]
551s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libgcc-15-dev armhf 15.2.0-5ubuntu1 [898 kB]
551s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-5ubuntu1 [19.5 MB]
552s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-15 armhf 15.2.0-5ubuntu1 [492 kB]
552s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [1220 B]
552s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf gcc armhf 4:15.2.0-4ubuntu1 [5022 B]
552s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libc-dev-bin armhf 2.42-0ubuntu3 [21.8 kB]
552s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf linux-libc-dev armhf 6.17.0-5.5 [1771 kB]
552s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt-dev armhf 1:4.4.38-1build1 [120 kB]
552s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf rpcsvc-proto armhf 1.4.3-1 [62.3 kB]
552s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libc6-dev armhf 2.42-0ubuntu3 [1416 kB]
552s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libstdc++-15-dev armhf 15.2.0-5ubuntu1 [2635 kB]
552s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-5ubuntu1 [11.4 MB]
553s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf g++-15 armhf 15.2.0-5ubuntu1 [23.7 kB]
553s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4ubuntu1 [968 B]
553s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf g++ armhf 4:15.2.0-4ubuntu1 [1086 B]
553s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-5ubuntu1 [334 kB]
553s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran-15-dev armhf 15.2.0-5ubuntu1 [380 kB]
553s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15-arm-linux-gnueabihf armhf 15.2.0-5ubuntu1 [10.7 MB]
553s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf gfortran-15 armhf 15.2.0-5ubuntu1 [17.7 kB]
553s Get:37 http://ftpmaster.internal/ubuntu resolute/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
553s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-6build1 [133 kB]
553s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB]
553s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB]
553s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB]
553s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB]
553s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B]
553s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB]
553s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB]
553s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libcurl3t64-gnutls armhf 8.14.1-2ubuntu1 [352 kB]
553s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB]
553s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf libdouble-conversion3 armhf 3.3.1-1build1 [39.3 kB]
553s Get:49 http://ftpmaster.internal/ubuntu resolute/main armhf libdrm-amdgpu1 armhf 2.4.125-1 [19.5 kB]
553s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build2 [368 kB]
553s Get:51 http://ftpmaster.internal/ubuntu resolute/main armhf libllvm20 armhf 1:20.1.8-0ubuntu4 [29.5 MB]
554s Get:52 http://ftpmaster.internal/ubuntu resolute/main armhf libx11-xcb1 armhf 2:1.8.12-1build1 [7920 B]
554s Get:53 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-dri3-0 armhf 1.17.0-2build1 [7350 B]
554s Get:54 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-present0 armhf 1.17.0-2build1 [6094 B]
554s Get:55 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-randr0 armhf 1.17.0-2build1 [16.9 kB]
554s Get:56 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-sync1 armhf 1.17.0-2build1 [8852 B]
554s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-xfixes0 armhf 1.17.0-2build1 [10.2 kB]
554s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B]
554s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf mesa-libgallium armhf 25.2.3-1ubuntu1 [8778 kB]
554s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf libgbm1 armhf 25.2.3-1ubuntu1 [30.0 kB]
554s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf libvulkan1 armhf 1.4.321.0-1 [130 kB]
554s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf libgl1-mesa-dri armhf 25.2.3-1ubuntu1 [32.3 kB]
554s Get:63 http://ftpmaster.internal/ubuntu resolute/main armhf libglvnd0 armhf 1.7.0-1build2 [64.7 kB]
554s Get:64 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-glx0 armhf 1.17.0-2build1 [22.8 kB]
554s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B]
554s Get:66 http://ftpmaster.internal/ubuntu resolute/main armhf libglx-mesa0 armhf 25.2.3-1ubuntu1 [87.2 kB]
554s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf libglx0 armhf 1.7.0-1build2 [37.9 kB]
554s Get:68 http://ftpmaster.internal/ubuntu resolute/main armhf libgl1 armhf 1.7.0-1build2 [103 kB]
554s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB]
554s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB]
554s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
554s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-310 armhf 1.14.5+repack-3build1 [1411 kB]
554s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3build1 [58.9 kB]
554s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf libhwloc15 armhf 2.12.2-1 [149 kB]
554s Get:75 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB]
554s Get:76 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
554s Get:77 http://ftpmaster.internal/ubuntu resolute/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB]
554s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB]
554s Get:79 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-6build1 [2091 kB]
554s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf libmpich12 armhf 4.3.0+really4.2.1-1build1 [1688 kB]
555s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf libnetcdf22 armhf 1:4.9.3-1build1 [511 kB]
555s Get:82 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.13 armhf 3.13.7-1 [2123 kB]
555s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB]
555s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB]
555s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf libopengl0 armhf 1.7.0-1build2 [36.0 kB]
555s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf proj-data all 9.6.0-1 [7955 kB]
555s Get:87 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
555s Get:88 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB]
555s Get:89 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB]
555s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB]
555s Get:91 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB]
555s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf libproj25 armhf 9.6.0-1 [1345 kB]
555s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbbbind-2-5 armhf 2022.1.0-1 [13.2 kB]
555s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbbmalloc2 armhf 2022.1.0-1 [47.4 kB]
555s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf libtbb12 armhf 2022.1.0-1 [81.5 kB]
555s Get:96 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB]
555s Get:97 http://ftpmaster.internal/ubuntu resolute/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB]
555s Get:98 http://ftpmaster.internal/ubuntu resolute/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB]
555s Get:99 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
555s Get:100 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB]
555s Get:101 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
555s Get:102 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB]
556s Get:103 http://ftpmaster.internal/ubuntu resolute/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu2 [21.9 MB]
557s Get:104 http://ftpmaster.internal/ubuntu resolute/universe armhf liblammps0t64 armhf 20250204+dfsg.1-2 [7282 kB]
557s Get:105 http://ftpmaster.internal/ubuntu resolute/main armhf libnuma-dev armhf 2.0.19-1 [35.1 kB]
557s Get:106 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl7 armhf 2.5.4-4build1 [40.0 kB]
557s Get:107 http://ftpmaster.internal/ubuntu resolute/main armhf libltdl-dev armhf 2.5.4-4build1 [169 kB]
557s Get:108 http://ftpmaster.internal/ubuntu resolute/universe armhf libhwloc-dev armhf 2.12.2-1 [248 kB]
557s Get:109 http://ftpmaster.internal/ubuntu resolute/universe armhf hwloc-nox armhf 2.12.2-1 [215 kB]
557s Get:110 http://ftpmaster.internal/ubuntu resolute/universe armhf libslurm42t64 armhf 24.11.5-4 [771 kB]
557s Get:111 http://ftpmaster.internal/ubuntu resolute/universe armhf mpich armhf 4.3.0+really4.2.1-1build1 [239 kB]
557s Get:112 http://ftpmaster.internal/ubuntu resolute/universe armhf libmpich-dev armhf 4.3.0+really4.2.1-1build1 [2644 kB]
557s Get:113 http://ftpmaster.internal/ubuntu resolute/universe armhf mpi-default-dev armhf 1.18 [3322 B]
557s Get:114 http://ftpmaster.internal/ubuntu resolute/universe armhf liblammps-dev armhf 20250204+dfsg.1-2 [114 kB]
557s Get:115 http://ftpmaster.internal/ubuntu resolute/universe armhf mpi-default-bin armhf 1.18 [2504 B]
557s Get:116 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lammps armhf 20250204+dfsg.1-2 [75.4 kB]
558s Fetched 163 MB in 8s (20.0 MB/s)
558s Selecting previously unselected package m4.
558s (Reading database ... 
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(Reading database ... 61086 files and directories currently installed.)
558s Preparing to unpack .../000-m4_1.4.19-8_armhf.deb ...
558s Unpacking m4 (1.4.19-8) ...
558s Selecting previously unselected package autoconf.
558s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ...
558s Unpacking autoconf (2.72-3.1ubuntu1) ...
558s Selecting previously unselected package autotools-dev.
558s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ...
558s Unpacking autotools-dev (20240727.1) ...
558s Selecting previously unselected package automake.
558s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ...
558s Unpacking automake (1:1.17-4ubuntu1) ...
558s Selecting previously unselected package libisl23:armhf.
558s Preparing to unpack .../004-libisl23_0.27-1_armhf.deb ...
558s Unpacking libisl23:armhf (0.27-1) ...
558s Selecting previously unselected package libmpc3:armhf.
558s Preparing to unpack .../005-libmpc3_1.3.1-1build3_armhf.deb ...
558s Unpacking libmpc3:armhf (1.3.1-1build3) ...
558s Selecting previously unselected package cpp-15-arm-linux-gnueabihf.
558s Preparing to unpack .../006-cpp-15-arm-linux-gnueabihf_15.2.0-5ubuntu1_armhf.deb ...
558s Unpacking cpp-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
559s Selecting previously unselected package cpp-15.
559s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_armhf.deb ...
559s Unpacking cpp-15 (15.2.0-5ubuntu1) ...
559s Selecting previously unselected package cpp-arm-linux-gnueabihf.
559s Preparing to unpack .../008-cpp-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ...
559s Unpacking cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
559s Selecting previously unselected package cpp.
559s Preparing to unpack .../009-cpp_4%3a15.2.0-4ubuntu1_armhf.deb ...
559s Unpacking cpp (4:15.2.0-4ubuntu1) ...
559s Selecting previously unselected package fonts-dejavu-mono.
559s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ...
559s Unpacking fonts-dejavu-mono (2.37-8) ...
559s Selecting previously unselected package fonts-dejavu-core.
559s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ...
559s Unpacking fonts-dejavu-core (2.37-8) ...
559s Selecting previously unselected package fontconfig-config.
559s Preparing to unpack .../012-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ...
559s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ...
559s Selecting previously unselected package libcc1-0:armhf.
559s Preparing to unpack .../013-libcc1-0_15.2.0-5ubuntu1_armhf.deb ...
559s Unpacking libcc1-0:armhf (15.2.0-5ubuntu1) ...
559s Selecting previously unselected package libgomp1:armhf.
559s Preparing to unpack .../014-libgomp1_15.2.0-5ubuntu1_armhf.deb ...
559s Unpacking libgomp1:armhf (15.2.0-5ubuntu1) ...
559s Selecting previously unselected package libasan8:armhf.
559s Preparing to unpack .../015-libasan8_15.2.0-5ubuntu1_armhf.deb ...
559s Unpacking libasan8:armhf (15.2.0-5ubuntu1) ...
559s Selecting previously unselected package libubsan1:armhf.
559s Preparing to unpack .../016-libubsan1_15.2.0-5ubuntu1_armhf.deb ...
559s Unpacking libubsan1:armhf (15.2.0-5ubuntu1) ...
560s Selecting previously unselected package libgcc-15-dev:armhf.
560s Preparing to unpack .../017-libgcc-15-dev_15.2.0-5ubuntu1_armhf.deb ...
560s Unpacking libgcc-15-dev:armhf (15.2.0-5ubuntu1) ...
560s Selecting previously unselected package gcc-15-arm-linux-gnueabihf.
560s Preparing to unpack .../018-gcc-15-arm-linux-gnueabihf_15.2.0-5ubuntu1_armhf.deb ...
560s Unpacking gcc-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
560s Selecting previously unselected package gcc-15.
560s Preparing to unpack .../019-gcc-15_15.2.0-5ubuntu1_armhf.deb ...
560s Unpacking gcc-15 (15.2.0-5ubuntu1) ...
560s Selecting previously unselected package gcc-arm-linux-gnueabihf.
560s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ...
560s Unpacking gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
560s Selecting previously unselected package gcc.
560s Preparing to unpack .../021-gcc_4%3a15.2.0-4ubuntu1_armhf.deb ...
560s Unpacking gcc (4:15.2.0-4ubuntu1) ...
560s Selecting previously unselected package libc-dev-bin.
560s Preparing to unpack .../022-libc-dev-bin_2.42-0ubuntu3_armhf.deb ...
560s Unpacking libc-dev-bin (2.42-0ubuntu3) ...
560s Selecting previously unselected package linux-libc-dev:armhf.
560s Preparing to unpack .../023-linux-libc-dev_6.17.0-5.5_armhf.deb ...
560s Unpacking linux-libc-dev:armhf (6.17.0-5.5) ...
560s Selecting previously unselected package libcrypt-dev:armhf.
560s Preparing to unpack .../024-libcrypt-dev_1%3a4.4.38-1build1_armhf.deb ...
560s Unpacking libcrypt-dev:armhf (1:4.4.38-1build1) ...
560s Selecting previously unselected package rpcsvc-proto.
560s Preparing to unpack .../025-rpcsvc-proto_1.4.3-1_armhf.deb ...
560s Unpacking rpcsvc-proto (1.4.3-1) ...
560s Selecting previously unselected package libc6-dev:armhf.
560s Preparing to unpack .../026-libc6-dev_2.42-0ubuntu3_armhf.deb ...
560s Unpacking libc6-dev:armhf (2.42-0ubuntu3) ...
561s Selecting previously unselected package libstdc++-15-dev:armhf.
561s Preparing to unpack .../027-libstdc++-15-dev_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking libstdc++-15-dev:armhf (15.2.0-5ubuntu1) ...
561s Selecting previously unselected package g++-15-arm-linux-gnueabihf.
561s Preparing to unpack .../028-g++-15-arm-linux-gnueabihf_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking g++-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
561s Selecting previously unselected package g++-15.
561s Preparing to unpack .../029-g++-15_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking g++-15 (15.2.0-5ubuntu1) ...
561s Selecting previously unselected package g++-arm-linux-gnueabihf.
561s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a15.2.0-4ubuntu1_armhf.deb ...
561s Unpacking g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
561s Selecting previously unselected package g++.
561s Preparing to unpack .../031-g++_4%3a15.2.0-4ubuntu1_armhf.deb ...
561s Unpacking g++ (4:15.2.0-4ubuntu1) ...
561s Selecting previously unselected package libgfortran5:armhf.
561s Preparing to unpack .../032-libgfortran5_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking libgfortran5:armhf (15.2.0-5ubuntu1) ...
561s Selecting previously unselected package libgfortran-15-dev:armhf.
561s Preparing to unpack .../033-libgfortran-15-dev_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking libgfortran-15-dev:armhf (15.2.0-5ubuntu1) ...
561s Selecting previously unselected package gfortran-15-arm-linux-gnueabihf.
561s Preparing to unpack .../034-gfortran-15-arm-linux-gnueabihf_15.2.0-5ubuntu1_armhf.deb ...
561s Unpacking gfortran-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
562s Selecting previously unselected package gfortran-15.
562s Preparing to unpack .../035-gfortran-15_15.2.0-5ubuntu1_armhf.deb ...
562s Unpacking gfortran-15 (15.2.0-5ubuntu1) ...
562s Selecting previously unselected package libaec0:armhf.
562s Preparing to unpack .../036-libaec0_1.1.3-1_armhf.deb ...
562s Unpacking libaec0:armhf (1.1.3-1) ...
562s Selecting previously unselected package libblas3:armhf.
562s Preparing to unpack .../037-libblas3_3.12.1-6build1_armhf.deb ...
562s Unpacking libblas3:armhf (3.12.1-6build1) ...
562s Selecting previously unselected package libfreetype6:armhf.
562s Preparing to unpack .../038-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ...
562s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ...
562s Selecting previously unselected package libfontconfig1:armhf.
562s Preparing to unpack .../039-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ...
562s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ...
562s Selecting previously unselected package libpixman-1-0:armhf.
562s Preparing to unpack .../040-libpixman-1-0_0.44.0-3_armhf.deb ...
562s Unpacking libpixman-1-0:armhf (0.44.0-3) ...
562s Selecting previously unselected package libxcb-render0:armhf.
562s Preparing to unpack .../041-libxcb-render0_1.17.0-2build1_armhf.deb ...
562s Unpacking libxcb-render0:armhf (1.17.0-2build1) ...
562s Selecting previously unselected package libxcb-shm0:armhf.
562s Preparing to unpack .../042-libxcb-shm0_1.17.0-2build1_armhf.deb ...
562s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ...
562s Selecting previously unselected package libxrender1:armhf.
562s Preparing to unpack .../043-libxrender1_1%3a0.9.12-1_armhf.deb ...
562s Unpacking libxrender1:armhf (1:0.9.12-1) ...
562s Selecting previously unselected package libcairo2:armhf.
562s Preparing to unpack .../044-libcairo2_1.18.4-1build1_armhf.deb ...
562s Unpacking libcairo2:armhf (1.18.4-1build1) ...
562s Selecting previously unselected package libcurl3t64-gnutls:armhf.
562s Preparing to unpack .../045-libcurl3t64-gnutls_8.14.1-2ubuntu1_armhf.deb ...
562s Unpacking libcurl3t64-gnutls:armhf (8.14.1-2ubuntu1) ...
562s Selecting previously unselected package libdeflate0:armhf.
562s Preparing to unpack .../046-libdeflate0_1.23-2_armhf.deb ...
562s Unpacking libdeflate0:armhf (1.23-2) ...
562s Selecting previously unselected package libdouble-conversion3:armhf.
562s Preparing to unpack .../047-libdouble-conversion3_3.3.1-1build1_armhf.deb ...
562s Unpacking libdouble-conversion3:armhf (3.3.1-1build1) ...
562s Selecting previously unselected package libdrm-amdgpu1:armhf.
562s Preparing to unpack .../048-libdrm-amdgpu1_2.4.125-1_armhf.deb ...
562s Unpacking libdrm-amdgpu1:armhf (2.4.125-1) ...
562s Selecting previously unselected package libfftw3-double3:armhf.
562s Preparing to unpack .../049-libfftw3-double3_3.3.10-2fakesync1build2_armhf.deb ...
562s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build2) ...
562s Selecting previously unselected package libllvm20:armhf.
562s Preparing to unpack .../050-libllvm20_1%3a20.1.8-0ubuntu4_armhf.deb ...
562s Unpacking libllvm20:armhf (1:20.1.8-0ubuntu4) ...
563s Selecting previously unselected package libx11-xcb1:armhf.
563s Preparing to unpack .../051-libx11-xcb1_2%3a1.8.12-1build1_armhf.deb ...
563s Unpacking libx11-xcb1:armhf (2:1.8.12-1build1) ...
563s Selecting previously unselected package libxcb-dri3-0:armhf.
563s Preparing to unpack .../052-libxcb-dri3-0_1.17.0-2build1_armhf.deb ...
563s Unpacking libxcb-dri3-0:armhf (1.17.0-2build1) ...
563s Selecting previously unselected package libxcb-present0:armhf.
563s Preparing to unpack .../053-libxcb-present0_1.17.0-2build1_armhf.deb ...
563s Unpacking libxcb-present0:armhf (1.17.0-2build1) ...
563s Selecting previously unselected package libxcb-randr0:armhf.
563s Preparing to unpack .../054-libxcb-randr0_1.17.0-2build1_armhf.deb ...
563s Unpacking libxcb-randr0:armhf (1.17.0-2build1) ...
563s Selecting previously unselected package libxcb-sync1:armhf.
563s Preparing to unpack .../055-libxcb-sync1_1.17.0-2build1_armhf.deb ...
563s Unpacking libxcb-sync1:armhf (1.17.0-2build1) ...
563s Selecting previously unselected package libxcb-xfixes0:armhf.
563s Preparing to unpack .../056-libxcb-xfixes0_1.17.0-2build1_armhf.deb ...
563s Unpacking libxcb-xfixes0:armhf (1.17.0-2build1) ...
563s Selecting previously unselected package libxshmfence1:armhf.
563s Preparing to unpack .../057-libxshmfence1_1.3.3-1_armhf.deb ...
563s Unpacking libxshmfence1:armhf (1.3.3-1) ...
563s Selecting previously unselected package mesa-libgallium:armhf.
563s Preparing to unpack .../058-mesa-libgallium_25.2.3-1ubuntu1_armhf.deb ...
563s Unpacking mesa-libgallium:armhf (25.2.3-1ubuntu1) ...
564s Selecting previously unselected package libgbm1:armhf.
564s Preparing to unpack .../059-libgbm1_25.2.3-1ubuntu1_armhf.deb ...
564s Unpacking libgbm1:armhf (25.2.3-1ubuntu1) ...
564s Selecting previously unselected package libvulkan1:armhf.
564s Preparing to unpack .../060-libvulkan1_1.4.321.0-1_armhf.deb ...
564s Unpacking libvulkan1:armhf (1.4.321.0-1) ...
564s Selecting previously unselected package libgl1-mesa-dri:armhf.
564s Preparing to unpack .../061-libgl1-mesa-dri_25.2.3-1ubuntu1_armhf.deb ...
564s Unpacking libgl1-mesa-dri:armhf (25.2.3-1ubuntu1) ...
564s Selecting previously unselected package libglvnd0:armhf.
564s Preparing to unpack .../062-libglvnd0_1.7.0-1build2_armhf.deb ...
564s Unpacking libglvnd0:armhf (1.7.0-1build2) ...
564s Selecting previously unselected package libxcb-glx0:armhf.
564s Preparing to unpack .../063-libxcb-glx0_1.17.0-2build1_armhf.deb ...
564s Unpacking libxcb-glx0:armhf (1.17.0-2build1) ...
564s Selecting previously unselected package libxxf86vm1:armhf.
564s Preparing to unpack .../064-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ...
564s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ...
564s Selecting previously unselected package libglx-mesa0:armhf.
564s Preparing to unpack .../065-libglx-mesa0_25.2.3-1ubuntu1_armhf.deb ...
564s Unpacking libglx-mesa0:armhf (25.2.3-1ubuntu1) ...
564s Selecting previously unselected package libglx0:armhf.
564s Preparing to unpack .../066-libglx0_1.7.0-1build2_armhf.deb ...
564s Unpacking libglx0:armhf (1.7.0-1build2) ...
564s Selecting previously unselected package libgl1:armhf.
564s Preparing to unpack .../067-libgl1_1.7.0-1build2_armhf.deb ...
564s Unpacking libgl1:armhf (1.7.0-1build2) ...
564s Selecting previously unselected package libgl2ps1.4.
564s Preparing to unpack .../068-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ...
564s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
564s Selecting previously unselected package libglew2.2:armhf.
564s Preparing to unpack .../069-libglew2.2_2.2.0-4build1_armhf.deb ...
564s Unpacking libglew2.2:armhf (2.2.0-4build1) ...
564s Selecting previously unselected package libsz2:armhf.
564s Preparing to unpack .../070-libsz2_1.1.3-1_armhf.deb ...
564s Unpacking libsz2:armhf (1.1.3-1) ...
564s Selecting previously unselected package libhdf5-310:armhf.
564s Preparing to unpack .../071-libhdf5-310_1.14.5+repack-3build1_armhf.deb ...
564s Unpacking libhdf5-310:armhf (1.14.5+repack-3build1) ...
564s Selecting previously unselected package libhdf5-hl-310:armhf.
564s Preparing to unpack .../072-libhdf5-hl-310_1.14.5+repack-3build1_armhf.deb ...
564s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3build1) ...
564s Selecting previously unselected package libhwloc15:armhf.
564s Preparing to unpack .../073-libhwloc15_2.12.2-1_armhf.deb ...
564s Unpacking libhwloc15:armhf (2.12.2-1) ...
564s Selecting previously unselected package libjpeg-turbo8:armhf.
564s Preparing to unpack .../074-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ...
564s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ...
564s Selecting previously unselected package libjpeg8:armhf.
564s Preparing to unpack .../075-libjpeg8_8c-2ubuntu11_armhf.deb ...
564s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
564s Selecting previously unselected package libjsoncpp26:armhf.
564s Preparing to unpack .../076-libjsoncpp26_1.9.6-3_armhf.deb ...
564s Unpacking libjsoncpp26:armhf (1.9.6-3) ...
564s Selecting previously unselected package libkim-api2:armhf.
564s Preparing to unpack .../077-libkim-api2_2.3.0-1ubuntu1_armhf.deb ...
564s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ...
564s Selecting previously unselected package liblapack3:armhf.
564s Preparing to unpack .../078-liblapack3_3.12.1-6build1_armhf.deb ...
564s Unpacking liblapack3:armhf (3.12.1-6build1) ...
565s Selecting previously unselected package libmpich12:armhf.
565s Preparing to unpack .../079-libmpich12_4.3.0+really4.2.1-1build1_armhf.deb ...
565s Unpacking libmpich12:armhf (4.3.0+really4.2.1-1build1) ...
565s Selecting previously unselected package libnetcdf22:armhf.
565s Preparing to unpack .../080-libnetcdf22_1%3a4.9.3-1build1_armhf.deb ...
565s Unpacking libnetcdf22:armhf (1:4.9.3-1build1) ...
565s Selecting previously unselected package libpython3.13:armhf.
565s Preparing to unpack .../081-libpython3.13_3.13.7-1_armhf.deb ...
565s Unpacking libpython3.13:armhf (3.13.7-1) ...
565s Selecting previously unselected package libvoro++1.
565s Preparing to unpack .../082-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ...
565s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ...
565s Selecting previously unselected package libogg0:armhf.
565s Preparing to unpack .../083-libogg0_1.3.5-3build1_armhf.deb ...
565s Unpacking libogg0:armhf (1.3.5-3build1) ...
565s Selecting previously unselected package libopengl0:armhf.
565s Preparing to unpack .../084-libopengl0_1.7.0-1build2_armhf.deb ...
565s Unpacking libopengl0:armhf (1.7.0-1build2) ...
565s Selecting previously unselected package proj-data.
565s Preparing to unpack .../085-proj-data_9.6.0-1_all.deb ...
565s Unpacking proj-data (9.6.0-1) ...
565s Selecting previously unselected package libjbig0:armhf.
565s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_armhf.deb ...
565s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ...
565s Selecting previously unselected package liblerc4:armhf.
565s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ...
565s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ...
565s Selecting previously unselected package libsharpyuv0:armhf.
565s Preparing to unpack .../088-libsharpyuv0_1.5.0-0.1_armhf.deb ...
565s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ...
565s Selecting previously unselected package libwebp7:armhf.
565s Preparing to unpack .../089-libwebp7_1.5.0-0.1_armhf.deb ...
565s Unpacking libwebp7:armhf (1.5.0-0.1) ...
565s Selecting previously unselected package libtiff6:armhf.
565s Preparing to unpack .../090-libtiff6_4.7.0-3ubuntu3_armhf.deb ...
565s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ...
565s Selecting previously unselected package libproj25:armhf.
565s Preparing to unpack .../091-libproj25_9.6.0-1_armhf.deb ...
565s Unpacking libproj25:armhf (9.6.0-1) ...
565s Selecting previously unselected package libtbbbind-2-5:armhf.
565s Preparing to unpack .../092-libtbbbind-2-5_2022.1.0-1_armhf.deb ...
565s Unpacking libtbbbind-2-5:armhf (2022.1.0-1) ...
565s Selecting previously unselected package libtbbmalloc2:armhf.
565s Preparing to unpack .../093-libtbbmalloc2_2022.1.0-1_armhf.deb ...
565s Unpacking libtbbmalloc2:armhf (2022.1.0-1) ...
565s Selecting previously unselected package libtbb12:armhf.
565s Preparing to unpack .../094-libtbb12_2022.1.0-1_armhf.deb ...
565s Unpacking libtbb12:armhf (2022.1.0-1) ...
565s Selecting previously unselected package libtcl8.6:armhf.
565s Preparing to unpack .../095-libtcl8.6_8.6.17+dfsg-1_armhf.deb ...
565s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ...
565s Selecting previously unselected package libtheoradec1:armhf.
565s Preparing to unpack .../096-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ...
565s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ...
565s Selecting previously unselected package libtheoraenc1:armhf.
565s Preparing to unpack .../097-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb ...
565s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ...
565s Selecting previously unselected package libxft2:armhf.
565s Preparing to unpack .../098-libxft2_2.3.6-1build1_armhf.deb ...
565s Unpacking libxft2:armhf (2.3.6-1build1) ...
566s Selecting previously unselected package x11-common.
566s Preparing to unpack .../099-x11-common_1%3a7.7+24ubuntu1_all.deb ...
566s Unpacking x11-common (1:7.7+24ubuntu1) ...
566s Selecting previously unselected package libxss1:armhf.
566s Preparing to unpack .../100-libxss1_1%3a1.2.3-1build3_armhf.deb ...
566s Unpacking libxss1:armhf (1:1.2.3-1build3) ...
566s Selecting previously unselected package libtk8.6:armhf.
566s Preparing to unpack .../101-libtk8.6_8.6.17-1_armhf.deb ...
566s Unpacking libtk8.6:armhf (8.6.17-1) ...
566s Selecting previously unselected package libvtk9.3:armhf.
566s Preparing to unpack .../102-libvtk9.3_9.3.0+dfsg1-4ubuntu2_armhf.deb ...
566s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu2) ...
566s Selecting previously unselected package liblammps0t64:armhf.
566s Preparing to unpack .../103-liblammps0t64_20250204+dfsg.1-2_armhf.deb ...
566s Unpacking liblammps0t64:armhf (20250204+dfsg.1-2) ...
567s Selecting previously unselected package libnuma-dev:armhf.
567s Preparing to unpack .../104-libnuma-dev_2.0.19-1_armhf.deb ...
567s Unpacking libnuma-dev:armhf (2.0.19-1) ...
567s Selecting previously unselected package libltdl7:armhf.
567s Preparing to unpack .../105-libltdl7_2.5.4-4build1_armhf.deb ...
567s Unpacking libltdl7:armhf (2.5.4-4build1) ...
567s Selecting previously unselected package libltdl-dev:armhf.
567s Preparing to unpack .../106-libltdl-dev_2.5.4-4build1_armhf.deb ...
567s Unpacking libltdl-dev:armhf (2.5.4-4build1) ...
567s Selecting previously unselected package libhwloc-dev:armhf.
567s Preparing to unpack .../107-libhwloc-dev_2.12.2-1_armhf.deb ...
567s Unpacking libhwloc-dev:armhf (2.12.2-1) ...
567s Selecting previously unselected package hwloc-nox.
567s Preparing to unpack .../108-hwloc-nox_2.12.2-1_armhf.deb ...
567s Unpacking hwloc-nox (2.12.2-1) ...
567s Selecting previously unselected package libslurm42t64.
567s Preparing to unpack .../109-libslurm42t64_24.11.5-4_armhf.deb ...
567s Unpacking libslurm42t64 (24.11.5-4) ...
567s Selecting previously unselected package mpich.
567s Preparing to unpack .../110-mpich_4.3.0+really4.2.1-1build1_armhf.deb ...
567s Unpacking mpich (4.3.0+really4.2.1-1build1) ...
567s Selecting previously unselected package libmpich-dev:armhf.
567s Preparing to unpack .../111-libmpich-dev_4.3.0+really4.2.1-1build1_armhf.deb ...
567s Unpacking libmpich-dev:armhf (4.3.0+really4.2.1-1build1) ...
567s Selecting previously unselected package mpi-default-dev.
567s Preparing to unpack .../112-mpi-default-dev_1.18_armhf.deb ...
567s Unpacking mpi-default-dev (1.18) ...
567s Selecting previously unselected package liblammps-dev.
567s Preparing to unpack .../113-liblammps-dev_20250204+dfsg.1-2_armhf.deb ...
567s Unpacking liblammps-dev (20250204+dfsg.1-2) ...
567s Selecting previously unselected package mpi-default-bin.
567s Preparing to unpack .../114-mpi-default-bin_1.18_armhf.deb ...
567s Unpacking mpi-default-bin (1.18) ...
567s Selecting previously unselected package python3-lammps.
567s Preparing to unpack .../115-python3-lammps_20250204+dfsg.1-2_armhf.deb ...
567s Unpacking python3-lammps (20250204+dfsg.1-2) ...
567s Setting up libpython3.13:armhf (3.13.7-1) ...
567s Setting up libxcb-dri3-0:armhf (1.17.0-2build1) ...
567s Setting up libtbbmalloc2:armhf (2022.1.0-1) ...
567s Setting up libpixman-1-0:armhf (0.44.0-3) ...
567s Setting up libsharpyuv0:armhf (1.5.0-0.1) ...
567s Setting up libx11-xcb1:armhf (2:1.8.12-1build1) ...
567s Setting up libdouble-conversion3:armhf (3.3.1-1build1) ...
567s Setting up libxcb-xfixes0:armhf (1.17.0-2build1) ...
567s Setting up libogg0:armhf (1.3.5-3build1) ...
567s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ...
567s Setting up proj-data (9.6.0-1) ...
567s Setting up libxrender1:armhf (1:0.9.12-1) ...
567s Setting up libxcb-render0:armhf (1.17.0-2build1) ...
567s Setting up libglvnd0:armhf (1.7.0-1build2) ...
567s Setting up libxcb-glx0:armhf (1.17.0-2build1) ...
567s Setting up x11-common (1:7.7+24ubuntu1) ...
568s Setting up libdeflate0:armhf (1.23-2) ...
568s Setting up libcurl3t64-gnutls:armhf (8.14.1-2ubuntu1) ...
568s Setting up linux-libc-dev:armhf (6.17.0-5.5) ...
568s Setting up m4 (1.4.19-8) ...
568s Setting up libxcb-shm0:armhf (1.17.0-2build1) ...
568s Setting up libgomp1:armhf (15.2.0-5ubuntu1) ...
568s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ...
568s Setting up libaec0:armhf (1.1.3-1) ...
568s Setting up libopengl0:armhf (1.7.0-1build2) ...
568s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ...
568s Setting up libxcb-present0:armhf (1.17.0-2build1) ...
568s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ...
568s Setting up autotools-dev (20240727.1) ...
568s Setting up libblas3:armhf (3.12.1-6build1) ...
568s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
568s Setting up rpcsvc-proto (1.4.3-1) ...
568s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ...
568s Setting up libxcb-sync1:armhf (1.17.0-2build1) ...
568s Setting up libjsoncpp26:armhf (1.9.6-3) ...
568s Setting up libslurm42t64 (24.11.5-4) ...
568s Setting up fonts-dejavu-mono (2.37-8) ...
568s Setting up libhwloc15:armhf (2.12.2-1) ...
568s Setting up libmpc3:armhf (1.3.1-1build3) ...
568s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ...
568s Setting up libllvm20:armhf (1:20.1.8-0ubuntu4) ...
568s Setting up fonts-dejavu-core (2.37-8) ...
568s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ...
568s Setting up libltdl7:armhf (2.5.4-4build1) ...
568s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build2) ...
568s Setting up libgfortran5:armhf (15.2.0-5ubuntu1) ...
568s Setting up libvulkan1:armhf (1.4.321.0-1) ...
568s Setting up autoconf (2.72-3.1ubuntu1) ...
568s Setting up libwebp7:armhf (1.5.0-0.1) ...
568s Setting up libubsan1:armhf (15.2.0-5ubuntu1) ...
568s Setting up libmpich12:armhf (4.3.0+really4.2.1-1build1) ...
568s Setting up libxshmfence1:armhf (1.3.3-1) ...
568s Setting up libcrypt-dev:armhf (1:4.4.38-1build1) ...
568s Setting up libxcb-randr0:armhf (1.17.0-2build1) ...
568s Setting up libasan8:armhf (15.2.0-5ubuntu1) ...
568s Setting up libxss1:armhf (1:1.2.3-1build3) ...
568s Setting up libisl23:armhf (0.27-1) ...
568s Setting up libc-dev-bin (2.42-0ubuntu3) ...
568s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ...
568s Setting up cpp-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
568s Setting up libcc1-0:armhf (15.2.0-5ubuntu1) ...
568s Setting up cpp-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
568s Setting up libsz2:armhf (1.1.3-1) ...
568s Setting up libdrm-amdgpu1:armhf (2.4.125-1) ...
568s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
568s Setting up automake (1:1.17-4ubuntu1) ...
568s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
568s Setting up mesa-libgallium:armhf (25.2.3-1ubuntu1) ...
568s Setting up liblapack3:armhf (3.12.1-6build1) ...
568s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
568s Setting up libgcc-15-dev:armhf (15.2.0-5ubuntu1) ...
568s Setting up gcc-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
568s Setting up libgbm1:armhf (25.2.3-1ubuntu1) ...
568s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
568s Setting up libgl1-mesa-dri:armhf (25.2.3-1ubuntu1) ...
568s Setting up hwloc-nox (2.12.2-1) ...
568s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ...
568s Setting up libgfortran-15-dev:armhf (15.2.0-5ubuntu1) ...
568s Setting up libtbbbind-2-5:armhf (2022.1.0-1) ...
568s Setting up libltdl-dev:armhf (2.5.4-4build1) ...
568s Setting up libhdf5-310:armhf (1.14.5+repack-3build1) ...
568s Setting up cpp-15 (15.2.0-5ubuntu1) ...
568s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ...
568s Setting up cpp (4:15.2.0-4ubuntu1) ...
568s Setting up libc6-dev:armhf (2.42-0ubuntu3) ...
568s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ...
568s Setting up gcc-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
568s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3build1) ...
568s Setting up libxft2:armhf (2.3.6-1build1) ...
568s Setting up libglx-mesa0:armhf (25.2.3-1ubuntu1) ...
568s Setting up gfortran-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
568s Setting up libglx0:armhf (1.7.0-1build2) ...
568s Setting up libproj25:armhf (9.6.0-1) ...
568s Setting up mpich (4.3.0+really4.2.1-1build1) ...
568s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode
568s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
568s Setting up libtk8.6:armhf (8.6.17-1) ...
568s Setting up libnetcdf22:armhf (1:4.9.3-1build1) ...
568s Setting up mpi-default-bin (1.18) ...
568s Setting up libtbb12:armhf (2022.1.0-1) ...
568s Setting up libcairo2:armhf (1.18.4-1build1) ...
568s Setting up libnuma-dev:armhf (2.0.19-1) ...
568s Setting up gcc-15 (15.2.0-5ubuntu1) ...
568s Setting up libgl1:armhf (1.7.0-1build2) ...
568s Setting up libstdc++-15-dev:armhf (15.2.0-5ubuntu1) ...
568s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ...
568s Setting up libglew2.2:armhf (2.2.0-4build1) ...
568s Setting up libhwloc-dev:armhf (2.12.2-1) ...
568s Setting up gfortran-15 (15.2.0-5ubuntu1) ...
568s Setting up g++-15-arm-linux-gnueabihf (15.2.0-5ubuntu1) ...
568s Setting up gcc (4:15.2.0-4ubuntu1) ...
568s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
568s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu2) ...
568s Setting up g++-15 (15.2.0-5ubuntu1) ...
568s Setting up g++-arm-linux-gnueabihf (4:15.2.0-4ubuntu1) ...
568s Setting up liblammps0t64:armhf (20250204+dfsg.1-2) ...
568s Setting up g++ (4:15.2.0-4ubuntu1) ...
568s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
568s Setting up libmpich-dev:armhf (4.3.0+really4.2.1-1build1) ...
568s update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
568s Setting up mpi-default-dev (1.18) ...
568s Setting up liblammps-dev (20250204+dfsg.1-2) ...
568s Setting up python3-lammps (20250204+dfsg.1-2) ...
568s Processing triggers for man-db (2.13.1-1) ...
569s Processing triggers for install-info (7.1.1-1ubuntu1) ...
569s Processing triggers for libc-bin (2.42-0ubuntu3) ...
595s autopkgtest [01:19:01]: test command1: cd python/examples; python3 demo.py
595s autopkgtest [01:19:01]: test command1: [-----------------------
598s LAMMPS (4 Feb 2025)
598s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99)
598s   using 1 OpenMP thread(s) per MPI task
598s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962
598s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962)
598s   1 by 1 by 1 MPI processor grid
598s Created 4000 atoms
598s   using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962)
598s   create_atoms CPU = 0.001 seconds
598s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
598s Neighbor list info ...
598s   update: every = 20 steps, delay = 0 steps, check = no
598s   max neighbors/atom: 2000, page size: 100000
598s   master list distance cutoff = 2.8
598s   ghost atom cutoff = 2.8
598s   binsize = 1.4, bins = 12 12 12
598s   1 neighbor lists, perpetual/occasional/extra = 1 0 0
598s   (1) pair lj/cut, perpetual
598s       attributes: half, newton on
598s       pair build: half/bin/atomonly/newton
598s       stencil: half/bin/3d
598s       bin: standard
598s Setting up Verlet run ...
598s   Unit style    : lj
598s   Current step  : 0
598s   Time step     : 0.005
598s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes
598s    Step          Temp          E_pair         E_mol          TotEng         Press     
598s          0   1.44          -6.7733681      0             -4.6139081     -5.0199732    
598s        100   0.76838481    -5.7743924      0             -4.6221033      0.13682061   
598s Loop time of 0.259513 on 1 procs for 100 steps with 4000 atoms
598s 
598s Performance: 166465.752 tau/day, 385.337 timesteps/s, 1.541 Matom-step/s
598s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads
598s 
598s MPI task timing breakdown:
598s Section |  min time  |  avg time  |  max time  |%varavg| %total
598s ---------------------------------------------------------------
598s Pair    | 0.21809    | 0.21809    | 0.21809    |   0.0 | 84.04
598s Neigh   | 0.029037   | 0.029037   | 0.029037   |   0.0 | 11.19
598s Comm    | 0.0056656  | 0.0056656  | 0.0056656  |   0.0 |  2.18
598s Output  | 9.8958e-05 | 9.8958e-05 | 9.8958e-05 |   0.0 |  0.04
598s Modify  | 0.004479   | 0.004479   | 0.004479   |   0.0 |  1.73
598s Other   |            | 0.002141   |            |       |  0.83
598s 
598s Nlocal:           4000 ave        4000 max        4000 min
598s Histogram: 1 0 0 0 0 0 0 0 0 0
598s Nghost:           5758 ave        5758 max        5758 min
598s Histogram: 1 0 0 0 0 0 0 0 0 0
598s Neighs:         150488 ave      150488 max      150488 min
598s Histogram: 1 0 0 0 0 0 0 0 0 0
598s 
598s Total # of neighbors = 150488
598s Ave neighs/atom = 37.622
598s Neighbor list builds = 5
598s Dangerous builds not checked
598s 
598s Python output:
598s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228
598s Temperature from compute = 0.7683848148006243
598s Energy from equal-style variable = -5.774392400140558
598s Velocity component from atom-style variable = -0.16696430269966717
598s Volume from get_thermo =  4738.213693437576
598s Natoms from get_natoms = 4000
598s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676
598s Changed x[0][0] via scatter_atoms = 17.651271530416228
598s Total wall time: 0:00:00
599s autopkgtest [01:19:05]: test command1: -----------------------]
602s command1             PASS
602s autopkgtest [01:19:08]: test command1:  - - - - - - - - - - results - - - - - - - - - -
606s autopkgtest [01:19:12]: @@@@@@@@@@@@@@@@@@@@ summary
606s crack                PASS
606s dipole               PASS
606s ellipse              PASS
606s flow                 PASS
606s friction             PASS
606s hugo                 PASS
606s command1             PASS