0s autopkgtest [09:44:17]: starting date and time: 2025-12-03 09:44:17+0000 0s autopkgtest [09:44:17]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [09:44:17]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tppt45xs/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade gemmi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- lxd -r lxd-armhf-10.145.243.61 lxd-armhf-10.145.243.61:autopkgtest/ubuntu/resolute/armhf 27s autopkgtest [09:44:44]: testbed dpkg architecture: armhf 30s autopkgtest [09:44:47]: testbed apt version: 3.1.12 34s autopkgtest [09:44:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 38s autopkgtest [09:44:55]: testbed release detected to be: None 49s autopkgtest [09:45:06]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 53s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 53s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 53s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [147 kB] 53s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [981 kB] 54s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.2 kB] 54s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [186 kB] 54s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [678 kB] 54s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [8468 B] 54s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1414 kB] 55s Get:12 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.4 MB] 62s Get:13 http://ftpmaster.internal/ubuntu resolute/multiverse Sources [305 kB] 62s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1366 kB] 63s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.5 MB] 70s Get:16 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [175 kB] 71s Fetched 42.6 MB in 20s (2091 kB/s) 72s Reading package lists... 80s autopkgtest [09:45:37]: upgrading testbed (apt dist-upgrade and autopurge) 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 83s Calculating upgrade... 83s The following packages will be upgraded: 83s libpython3-stdlib python3 python3-gdbm python3-minimal 84s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 72.9 kB of archives. 84s After this operation, 2048 B of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.13.9-2 [28.1 kB] 84s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.13.9-2 [23.0 kB] 84s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.13.9-2 [10.8 kB] 84s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.13.9-2 [11.0 kB] 85s Fetched 72.9 kB in 1s (74.2 kB/s) 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 85s Preparing to unpack .../python3-minimal_3.13.9-2_armhf.deb ... 85s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 85s Setting up python3-minimal (3.13.9-2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 85s Preparing to unpack .../python3_3.13.9-2_armhf.deb ... 85s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 85s Preparing to unpack .../libpython3-stdlib_3.13.9-2_armhf.deb ... 85s Unpacking libpython3-stdlib:armhf (3.13.9-2) over (3.13.7-1) ... 85s Preparing to unpack .../python3-gdbm_3.13.9-2_armhf.deb ... 85s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 85s Setting up python3-gdbm (3.13.9-2) ... 85s Setting up libpython3-stdlib:armhf (3.13.9-2) ... 85s Setting up python3 (3.13.9-2) ... 86s Processing triggers for man-db (2.13.1-1) ... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Solving dependencies... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s autopkgtest [09:45:49]: rebooting testbed after setup commands that affected boot 138s autopkgtest [09:46:35]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 170s autopkgtest [09:47:07]: @@@@@@@@@@@@@@@@@@@@ apt-source gemmi 200s Get:1 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (dsc) [2386 B] 200s Get:2 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (tar) [1372 kB] 200s Get:3 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.7.1+ds-2 (diff) [7544 B] 200s gpgv: Signature made Wed Oct 1 08:46:07 2025 UTC 200s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 200s gpgv: issuer "merkys@debian.org" 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./gemmi_0.7.1+ds-2.dsc: no acceptable signature found 200s autopkgtest [09:47:37]: testing package gemmi version 0.7.1+ds-2 205s autopkgtest [09:47:42]: build not needed 208s autopkgtest [09:47:45]: test command1: preparing testbed 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Solving dependencies... 212s The following NEW packages will be installed: 212s fontconfig-config fonts-urw-base35 gemmi gemmi-dev libblas3 libcairo2 212s libdeflate0 libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 212s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 212s liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 212s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 212s libxcb-shm0 libxrender1 python3-biopython python3-cairo 212s python3-charset-normalizer python3-freetype python3-gemmi python3-iniconfig 212s python3-numpy python3-numpy-dev python3-pil python3-pluggy python3-pytest 212s python3-reportlab python3-rlpycairo sgml-base tao-pegtl-dev w3c-sgml-lib 212s x11-common xfonts-encodings xfonts-utils xml-core 212s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 212s Need to get 29.8 MB of archives. 212s After this operation, 88.0 MB of additional disk space will be used. 212s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.2.4+ds-1ubuntu1 [141 kB] 212s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 212s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-9ubuntu1 [334 kB] 212s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 213s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.2.4+ds-1ubuntu1 [3724 kB] 213s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libfontenc1 armhf 1:1.1.8-1build2 [11.7 kB] 213s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 214s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 214s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 214s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 214s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 215s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 215s Get:13 http://ftpmaster.internal/ubuntu resolute/universe armhf gemmi armhf 0.7.1+ds-2 [1276 kB] 215s Get:14 http://ftpmaster.internal/ubuntu resolute/universe armhf tao-pegtl-dev all 3.2.7-1 [59.6 kB] 215s Get:15 http://ftpmaster.internal/ubuntu resolute/universe armhf gemmi-dev armhf 0.7.1+ds-2 [1237 kB] 215s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 215s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 215s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 215s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 215s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 215s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 215s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 215s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-9ubuntu1 [129 kB] 215s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 215s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 215s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 215s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 215s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 215s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.17-1 [139 kB] 215s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 215s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 215s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 215s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 215s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 215s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 215s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 215s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 215s Get:38 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-charset-normalizer armhf 3.4.4-1 [167 kB] 215s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.3-2.1 [174 kB] 215s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 12.0.0-1ubuntu1 [462 kB] 215s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf python3-cairo armhf 1.27.0-2build1 [135 kB] 215s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-freetype all 2.5.1-2 [92.2 kB] 215s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-rlpycairo all 0.3.0-4 [9332 B] 215s Get:44 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-reportlab all 4.4.5-1 [1148 kB] 215s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf sgml-base all 1.31+nmu1 [11.0 kB] 215s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf xml-core all 0.19 [20.3 kB] 215s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 215s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-biopython armhf 1.86+dfsg-1 [1652 kB] 215s Get:49 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-gemmi armhf 0.7.1+ds-2 [1850 kB] 215s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-1 [6840 B] 215s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-1 [21.0 kB] 215s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 8.3.5-2 [252 kB] 216s Fetched 29.8 MB in 4s (7888 kB/s) 216s Selecting previously unselected package python3-numpy-dev:armhf. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 216s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 216s Unpacking python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 216s Selecting previously unselected package libblas3:armhf. 216s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 216s Unpacking libblas3:armhf (3.12.1-7) ... 216s Selecting previously unselected package libgfortran5:armhf. 216s Preparing to unpack .../02-libgfortran5_15.2.0-9ubuntu1_armhf.deb ... 216s Unpacking libgfortran5:armhf (15.2.0-9ubuntu1) ... 216s Selecting previously unselected package liblapack3:armhf. 216s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 216s Unpacking liblapack3:armhf (3.12.1-7) ... 216s Selecting previously unselected package python3-numpy. 216s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 216s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 217s Selecting previously unselected package libfontenc1:armhf. 217s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build2_armhf.deb ... 217s Unpacking libfontenc1:armhf (1:1.1.8-1build2) ... 217s Selecting previously unselected package libfreetype6:armhf. 217s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 217s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 217s Selecting previously unselected package x11-common. 217s Preparing to unpack .../07-x11-common_1%3a7.7+24ubuntu1_all.deb ... 217s Unpacking x11-common (1:7.7+24ubuntu1) ... 217s Selecting previously unselected package xfonts-encodings. 217s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 217s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 217s Selecting previously unselected package xfonts-utils. 217s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_armhf.deb ... 217s Unpacking xfonts-utils (1:7.7+7) ... 217s Selecting previously unselected package fonts-urw-base35. 217s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 217s Unpacking fonts-urw-base35 (20200910-8) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../11-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 217s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 217s Selecting previously unselected package gemmi. 218s Preparing to unpack .../12-gemmi_0.7.1+ds-2_armhf.deb ... 218s Unpacking gemmi (0.7.1+ds-2) ... 218s Selecting previously unselected package tao-pegtl-dev. 218s Preparing to unpack .../13-tao-pegtl-dev_3.2.7-1_all.deb ... 218s Unpacking tao-pegtl-dev (3.2.7-1) ... 218s Selecting previously unselected package gemmi-dev. 218s Preparing to unpack .../14-gemmi-dev_0.7.1+ds-2_armhf.deb ... 218s Unpacking gemmi-dev (0.7.1+ds-2) ... 218s Selecting previously unselected package libfontconfig1:armhf. 218s Preparing to unpack .../15-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 218s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 218s Selecting previously unselected package libpixman-1-0:armhf. 218s Preparing to unpack .../16-libpixman-1-0_0.46.4-1_armhf.deb ... 218s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 218s Selecting previously unselected package libxcb-render0:armhf. 218s Preparing to unpack .../17-libxcb-render0_1.17.0-2build1_armhf.deb ... 218s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 218s Selecting previously unselected package libxcb-shm0:armhf. 218s Preparing to unpack .../18-libxcb-shm0_1.17.0-2build1_armhf.deb ... 218s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 218s Selecting previously unselected package libxrender1:armhf. 218s Preparing to unpack .../19-libxrender1_1%3a0.9.12-1_armhf.deb ... 218s Unpacking libxrender1:armhf (1:0.9.12-1) ... 218s Selecting previously unselected package libcairo2:armhf. 218s Preparing to unpack .../20-libcairo2_1.18.4-1build1_armhf.deb ... 218s Unpacking libcairo2:armhf (1.18.4-1build1) ... 218s Selecting previously unselected package libdeflate0:armhf. 218s Preparing to unpack .../21-libdeflate0_1.23-2_armhf.deb ... 218s Unpacking libdeflate0:armhf (1.23-2) ... 218s Selecting previously unselected package libgomp1:armhf. 218s Preparing to unpack .../22-libgomp1_15.2.0-9ubuntu1_armhf.deb ... 218s Unpacking libgomp1:armhf (15.2.0-9ubuntu1) ... 218s Selecting previously unselected package libgraphite2-3:armhf. 218s Preparing to unpack .../23-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 218s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 218s Selecting previously unselected package libharfbuzz0b:armhf. 218s Preparing to unpack .../24-libharfbuzz0b_12.1.0-1_armhf.deb ... 218s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 218s Selecting previously unselected package libimagequant0:armhf. 218s Preparing to unpack .../25-libimagequant0_2.18.0-1build1_armhf.deb ... 218s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 218s Selecting previously unselected package libjpeg-turbo8:armhf. 218s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 218s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 218s Selecting previously unselected package libjpeg8:armhf. 218s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_armhf.deb ... 218s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 218s Selecting previously unselected package liblcms2-2:armhf. 218s Preparing to unpack .../28-liblcms2-2_2.17-1_armhf.deb ... 218s Unpacking liblcms2-2:armhf (2.17-1) ... 218s Selecting previously unselected package liblerc4:armhf. 218s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 218s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 218s Selecting previously unselected package libraqm0:armhf. 220s Preparing to unpack .../30-libraqm0_0.10.3-1_armhf.deb ... 220s Unpacking libraqm0:armhf (0.10.3-1) ... 220s Selecting previously unselected package libsharpyuv0:armhf. 220s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_armhf.deb ... 220s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 220s Selecting previously unselected package libjbig0:armhf. 220s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 220s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 220s Selecting previously unselected package libwebp7:armhf. 220s Preparing to unpack .../33-libwebp7_1.5.0-0.1_armhf.deb ... 220s Unpacking libwebp7:armhf (1.5.0-0.1) ... 220s Selecting previously unselected package libtiff6:armhf. 220s Preparing to unpack .../34-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 220s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 220s Selecting previously unselected package libwebpdemux2:armhf. 220s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_armhf.deb ... 220s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 220s Selecting previously unselected package libwebpmux3:armhf. 220s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_armhf.deb ... 220s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 220s Selecting previously unselected package python3-charset-normalizer. 220s Preparing to unpack .../37-python3-charset-normalizer_3.4.4-1_armhf.deb ... 220s Unpacking python3-charset-normalizer (3.4.4-1) ... 220s Selecting previously unselected package libopenjp2-7:armhf. 220s Preparing to unpack .../38-libopenjp2-7_2.5.3-2.1_armhf.deb ... 220s Unpacking libopenjp2-7:armhf (2.5.3-2.1) ... 220s Selecting previously unselected package python3-pil:armhf. 220s Preparing to unpack .../39-python3-pil_12.0.0-1ubuntu1_armhf.deb ... 220s Unpacking python3-pil:armhf (12.0.0-1ubuntu1) ... 220s Selecting previously unselected package python3-cairo. 220s Preparing to unpack .../40-python3-cairo_1.27.0-2build1_armhf.deb ... 220s Unpacking python3-cairo (1.27.0-2build1) ... 220s Selecting previously unselected package python3-freetype. 220s Preparing to unpack .../41-python3-freetype_2.5.1-2_all.deb ... 220s Unpacking python3-freetype (2.5.1-2) ... 220s Selecting previously unselected package python3-rlpycairo. 220s Preparing to unpack .../42-python3-rlpycairo_0.3.0-4_all.deb ... 220s Unpacking python3-rlpycairo (0.3.0-4) ... 220s Selecting previously unselected package python3-reportlab. 220s Preparing to unpack .../43-python3-reportlab_4.4.5-1_all.deb ... 220s Unpacking python3-reportlab (4.4.5-1) ... 220s Selecting previously unselected package sgml-base. 220s Preparing to unpack .../44-sgml-base_1.31+nmu1_all.deb ... 220s Unpacking sgml-base (1.31+nmu1) ... 220s Selecting previously unselected package xml-core. 220s Preparing to unpack .../45-xml-core_0.19_all.deb ... 220s Unpacking xml-core (0.19) ... 220s Selecting previously unselected package w3c-sgml-lib. 220s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 220s Unpacking w3c-sgml-lib (1.3-3) ... 220s Selecting previously unselected package python3-biopython. 220s Preparing to unpack .../47-python3-biopython_1.86+dfsg-1_armhf.deb ... 220s Unpacking python3-biopython (1.86+dfsg-1) ... 220s Selecting previously unselected package python3-gemmi. 220s Preparing to unpack .../48-python3-gemmi_0.7.1+ds-2_armhf.deb ... 220s Unpacking python3-gemmi (0.7.1+ds-2) ... 220s Selecting previously unselected package python3-iniconfig. 220s Preparing to unpack .../49-python3-iniconfig_2.1.0-1_all.deb ... 220s Unpacking python3-iniconfig (2.1.0-1) ... 220s Selecting previously unselected package python3-pluggy. 220s Preparing to unpack .../50-python3-pluggy_1.6.0-1_all.deb ... 220s Unpacking python3-pluggy (1.6.0-1) ... 220s Selecting previously unselected package python3-pytest. 220s Preparing to unpack .../51-python3-pytest_8.3.5-2_all.deb ... 220s Unpacking python3-pytest (8.3.5-2) ... 220s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 220s Setting up liblcms2-2:armhf (2.17-1) ... 220s Setting up python3-iniconfig (2.1.0-1) ... 220s Setting up libpixman-1-0:armhf (0.46.4-1) ... 220s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 220s Setting up python3-gemmi (0.7.1+ds-2) ... 220s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 220s Setting up libxrender1:armhf (1:0.9.12-1) ... 220s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 220s Setting up python3-charset-normalizer (3.4.4-1) ... 220s Setting up x11-common (1:7.7+24ubuntu1) ... 220s Setting up libdeflate0:armhf (1.23-2) ... 220s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 220s Setting up libgomp1:armhf (15.2.0-9ubuntu1) ... 220s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 220s Setting up libfontenc1:armhf (1:1.1.8-1build2) ... 220s Setting up libblas3:armhf (3.12.1-7) ... 220s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 220s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 220s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 220s Setting up libimagequant0:armhf (2.18.0-1build1) ... 220s Setting up python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 220s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 220s Setting up libgfortran5:armhf (15.2.0-9ubuntu1) ... 220s Setting up python3-pluggy (1.6.0-1) ... 220s Setting up libwebp7:armhf (1.5.0-0.1) ... 220s Setting up libopenjp2-7:armhf (2.5.3-2.1) ... 220s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 220s Setting up sgml-base (1.31+nmu1) ... 220s Setting up gemmi (0.7.1+ds-2) ... 220s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 220s Setting up tao-pegtl-dev (3.2.7-1) ... 220s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 220s Setting up liblapack3:armhf (3.12.1-7) ... 220s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 220s Setting up python3-pytest (8.3.5-2) ... 221s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 221s Setting up gemmi-dev (0.7.1+ds-2) ... 221s Setting up python3-freetype (2.5.1-2) ... 221s Setting up xfonts-utils (1:7.7+7) ... 221s Setting up libraqm0:armhf (0.10.3-1) ... 221s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 223s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 223s Setting up xml-core (0.19) ... 223s Setting up fonts-urw-base35 (20200910-8) ... 223s Setting up python3-pil:armhf (12.0.0-1ubuntu1) ... 224s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 224s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 224s Setting up libcairo2:armhf (1.18.4-1build1) ... 224s Setting up python3-cairo (1.27.0-2build1) ... 224s Setting up python3-rlpycairo (0.3.0-4) ... 224s Setting up python3-reportlab (4.4.5-1) ... 226s Processing triggers for libc-bin (2.42-2ubuntu2) ... 226s Processing triggers for man-db (2.13.1-1) ... 227s Processing triggers for sgml-base (1.31+nmu1) ... 227s Setting up w3c-sgml-lib (1.3-3) ... 255s Setting up python3-biopython (1.86+dfsg-1) ... 272s autopkgtest [09:48:49]: test command1: pytest-3 -k 'not test_sfcalc_ and not test_sfcalc4' 272s autopkgtest [09:48:49]: test command1: [----------------------- 275s ........................................................................ [ 36%] 275s ......................................................s................. [ 72%] 276s ...................................................... [100%] 276s =========================== short test summary info ============================ 276s SKIPPED [1] tests/test_monlib.py:118: $CLIBD_MON not defined. 276s 197 passed, 1 skipped, 3 deselected in 1.40s 276s autopkgtest [09:48:53]: test command1: -----------------------] 280s autopkgtest [09:48:57]: test command1: - - - - - - - - - - results - - - - - - - - - - 280s command1 PASS 286s autopkgtest [09:49:03]: @@@@@@@@@@@@@@@@@@@@ summary 286s command1 PASS