0s autopkgtest [02:55:58]: starting date and time: 2026-02-05 02:55:58+0000 0s autopkgtest [02:55:58]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [02:55:58]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hmndlsnc/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade filtlong --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- lxd -r lxd-armhf-10.145.243.79 lxd-armhf-10.145.243.79:autopkgtest/ubuntu/resolute/armhf 22s autopkgtest [02:56:20]: testbed dpkg architecture: armhf 24s autopkgtest [02:56:22]: testbed apt version: 3.1.14 28s autopkgtest [02:56:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [02:56:28]: testbed release detected to be: None 38s autopkgtest [02:56:36]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 40s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 40s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 40s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 40s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 41s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 41s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 41s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 41s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [250 kB] 41s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [1364 kB] 41s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9664 B] 41s Fetched 3735 kB in 1s (2732 kB/s) 43s Reading package lists... 49s autopkgtest [02:56:47]: upgrading testbed (apt dist-upgrade and autopurge) 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s Calculating upgrade... 53s The following packages will be upgraded: 53s libc-bin libc-gconv-modules-extra libc6 locales 53s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 7850 kB of archives. 53s After this operation, 0 B of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-gconv-modules-extra armhf 2.42-2ubuntu5 [1417 kB] 53s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc6 armhf 2.42-2ubuntu5 [1632 kB] 53s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libc-bin armhf 2.42-2ubuntu5 [545 kB] 54s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf locales all 2.42-2ubuntu5 [4255 kB] 55s Preconfiguring packages ... 55s Fetched 7850 kB in 1s (6426 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 55s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_armhf.deb ... 55s Unpacking libc-gconv-modules-extra:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 55s Setting up libc-gconv-modules-extra:armhf (2.42-2ubuntu5) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 55s Preparing to unpack .../libc6_2.42-2ubuntu5_armhf.deb ... 55s readlink: /usr/lib/libeatmydata: No such file or directory 56s Unpacking libc6:armhf (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 56s Setting up libc6:armhf (2.42-2ubuntu5) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 56s Preparing to unpack .../libc-bin_2.42-2ubuntu5_armhf.deb ... 56s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 56s Setting up libc-bin (2.42-2ubuntu5) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 56s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 56s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 57s Setting up locales (2.42-2ubuntu5) ... 58s Generating locales (this might take a while)... 61s en_US.UTF-8... done 61s Generation complete. 61s Processing triggers for systemd (259-1ubuntu3) ... 62s Processing triggers for man-db (2.13.1-1) ... 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [02:57:07]: rebooting testbed after setup commands that affected boot 111s autopkgtest [02:57:49]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 137s autopkgtest [02:58:15]: @@@@@@@@@@@@@@@@@@@@ apt-source filtlong 152s Get:1 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (dsc) [2064 B] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (tar) [3009 kB] 152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (diff) [6960 B] 152s gpgv: Signature made Thu Dec 11 20:32:45 2025 UTC 152s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./filtlong_0.2.1-4build1.dsc: no acceptable signature found 152s autopkgtest [02:58:30]: testing package filtlong version 0.2.1-4build1 155s autopkgtest [02:58:33]: build not needed 158s autopkgtest [02:58:36]: test run-unit-test: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Solving dependencies... 161s The following NEW packages will be installed: 161s filtlong filtlong-data 161s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 4768 kB of archives. 161s After this operation, 5309 kB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu resolute/universe armhf filtlong armhf 0.2.1-4build1 [2868 kB] 162s Get:2 http://ftpmaster.internal/ubuntu resolute/universe armhf filtlong-data all 0.2.1-4build1 [1900 kB] 163s Fetched 4768 kB in 2s (2729 kB/s) 163s Selecting previously unselected package filtlong. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 68395 files and directories currently installed.) 163s Preparing to unpack .../filtlong_0.2.1-4build1_armhf.deb ... 163s Unpacking filtlong (0.2.1-4build1) ... 164s Selecting previously unselected package filtlong-data. 164s Preparing to unpack .../filtlong-data_0.2.1-4build1_all.deb ... 164s Unpacking filtlong-data (0.2.1-4build1) ... 164s Setting up filtlong (0.2.1-4build1) ... 164s Setting up filtlong-data (0.2.1-4build1) ... 164s Processing triggers for man-db (2.13.1-1) ... 174s autopkgtest [02:58:52]: test run-unit-test: [----------------------- 176s 176s Test 1 176s Scoring long reads 176s 3 reads (15000 bp) 176s 176s Filtering long reads 176s target: 11250 bp 176s keeping 15000 bp 176s 176s Outputting passed long reads 176s 176s 176s Passed 176s 176s Test 2 177s Scoring long reads 177s 3 reads (15000 bp) 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 3 177s 177s Hashing 16-mers from assembly 177s test_reference.fasta 177s test_reference.fasta (100000 bp) 177s 1 contig, 199964 16-mers 177s 177s Scoring long reads 177s 4 reads (11600 bp) 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 4 177s 177s Scoring long reads 177s 3 reads (15000 bp) 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 5 177s 177s Scoring long reads 177s 3 reads (15000 bp) 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 6 177s 177s Scoring long reads 177s 3 reads (15000 bp) 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 7 177s 177s Scoring long reads 177s 3 reads (15000 bp) 177s 177s Filtering long reads 177s target: 10000 bp 177s keeping 10000 bp 177s 177s Outputting passed long reads 177s 177s Passed 177s 177s Test 8 177s 177s Hashing 16-mers from Illumina reads 185s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 189s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp) test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 189s 40000 reads, 204833 16-mers 189s 189s Scoring long reads 189s 4 reads (11600 bp) 189s after splitting: 7 reads (11250 bp) 189s 189s Outputting passed long reads 189s 189s Passed 189s 189s Test 9 189s 189s Hashing 16-mers from Illumina reads 196s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 201s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp) test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 201s 40000 reads, 204833 16-mers 201s 201s Scoring long reads 201s 3 reads (15000 bp) 201s 201s Filtering long reads 201s target: 10000 bp 201s keeping 10000 bp 201s 201s Outputting passed long reads 201s Passed 201s 201s Test 10 201s 201s 201s Hashing 16-mers from Illumina reads 208s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 213s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp) test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 213s 40000 reads, 204833 16-mers 213s 213s Scoring long reads 213s 4 reads (4901 bp) 213s after trimming: 4 reads (4824 bp) 213s 213s Outputting passed long reads 213s 213s Passed 213s 213s Test 11 213s 214s Hashing 16-mers from assembly 214s test_reference.fasta 214s test_reference.fasta (100000 bp) 214s 1 contig, 199964 16-mers 214s 214s Scoring long reads 214s 4 reads (11600 bp) 214s after splitting: 4 reads (11600 bp) 214s 214s Outputting passed long reads 214s 214s Passed 214s 214s Test 12 214s 214s Hashing 16-mers from assembly 214s test_reference.fasta 214s test_reference.fasta (100000 bp) 214s 1 contig, 199964 16-mers 214s 214s Scoring long reads 214s 3 reads (15000 bp) 214s 214s Filtering long reads 214s target: 1 bp 214s keeping 5000 bp 214s 214s Outputting passed long reads 214s 214s 214s Passed 214s 214s Test 13 214s Hashing 16-mers from assembly 214s test_reference.fasta 214s test_reference.fasta (100000 bp) 214s 1 contig, 199964 16-mers 214s 214s Scoring long reads 214s Passed 214s 214s Test 14 214s 3 reads (15000 bp) 214s 214s Filtering long reads 214s target: 10000 bp 214s keeping 10000 bp 214s 214s Outputting passed long reads 214s 214s 214s Hashing 16-mers from assembly 214s test_reference.fasta 214s test_reference.fasta (100000 bp) 214s 1 contig, 199964 16-mers 214s 214s Scoring long reads 214s 4 reads (4901 bp) 214s after trimming: 4 reads (4824 bp) 214s 214s Outputting passed long reads 214s 214s Passed 214s 215s autopkgtest [02:59:33]: test run-unit-test: -----------------------] 219s autopkgtest [02:59:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 219s run-unit-test PASS 223s autopkgtest [02:59:41]: @@@@@@@@@@@@@@@@@@@@ summary 223s run-unit-test PASS