0s autopkgtest [16:57:40]: starting date and time: 2025-11-17 16:57:40+0000 0s autopkgtest [16:57:40]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [16:57:40]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ok4ctjsr/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:dnarrange --apt-upgrade dnarrange --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dnarrange/1.6.3-1 -- lxd -r lxd-armhf-10.145.243.210 lxd-armhf-10.145.243.210:autopkgtest/ubuntu/resolute/armhf 21s autopkgtest [16:58:01]: testbed dpkg architecture: armhf 23s autopkgtest [16:58:03]: testbed apt version: 3.1.11 27s autopkgtest [16:58:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [16:58:09]: testbed release detected to be: None 37s autopkgtest [16:58:17]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [87.8 kB] 39s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 39s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 39s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9852 B] 39s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [779 kB] 39s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [73.2 kB] 39s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 39s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [134 kB] 39s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B] 39s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [474 kB] 40s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9684 B] 40s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 42s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1416 kB] 42s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1369 kB] 42s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.4 MB] 46s Fetched 41.2 MB in 7s (5917 kB/s) 47s Reading package lists... 53s autopkgtest [16:58:33]: upgrading testbed (apt dist-upgrade and autopurge) 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 56s Calculating upgrade... 56s The following packages will be upgraded: 56s apt libapt-pkg7.0 libcrypt1 usbutils 57s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 2774 kB of archives. 57s After this operation, 8192 B of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf libapt-pkg7.0 armhf 3.1.12 [1157 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf apt armhf 3.1.12 [1440 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libcrypt1 armhf 1:4.5.1-1 [98.9 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf usbutils armhf 1:019-1 [77.7 kB] 58s Fetched 2774 kB in 1s (3221 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 58s Preparing to unpack .../libapt-pkg7.0_3.1.12_armhf.deb ... 58s Unpacking libapt-pkg7.0:armhf (3.1.12) over (3.1.11) ... 58s Setting up libapt-pkg7.0:armhf (3.1.12) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 58s Preparing to unpack .../archives/apt_3.1.12_armhf.deb ... 58s Unpacking apt (3.1.12) over (3.1.11) ... 59s Setting up apt (3.1.12) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 60s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_armhf.deb ... 60s Unpacking libcrypt1:armhf (1:4.5.1-1) over (1:4.4.38-1build1) ... 60s Setting up libcrypt1:armhf (1:4.5.1-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 60s Preparing to unpack .../usbutils_1%3a019-1_armhf.deb ... 60s Unpacking usbutils (1:019-1) over (1:018-2) ... 60s Setting up usbutils (1:019-1) ... 60s Processing triggers for man-db (2.13.1-1) ... 62s Processing triggers for libc-bin (2.42-2ubuntu2) ... 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Solving dependencies... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [16:58:50]: rebooting testbed after setup commands that affected boot 111s autopkgtest [16:59:31]: testbed running kernel: Linux 6.8.0-86-generic #87~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 29 09:26:46 UTC 2 136s autopkgtest [16:59:56]: @@@@@@@@@@@@@@@@@@@@ apt-source dnarrange 147s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (dsc) [1699 B] 147s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [1734 kB] 147s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [30.8 kB] 147s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (diff) [2740 B] 147s gpgv: Signature made Sat Nov 1 16:35:01 2025 UTC 147s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 147s gpgv: issuer "nilesh@debian.org" 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./dnarrange_1.6.3-1.dsc: no acceptable signature found 147s autopkgtest [17:00:07]: testing package dnarrange version 1.6.3-1 149s autopkgtest [17:00:09]: build not needed 151s autopkgtest [17:00:11]: test run-unit-test: preparing testbed 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Solving dependencies... 154s The following NEW packages will be installed: 154s dnarrange python3-all 155s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 20.8 kB of archives. 155s After this operation, 96.3 kB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf dnarrange all 1.6.3-1 [19.9 kB] 155s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.7-1 [884 B] 155s Fetched 20.8 kB in 0s (51.9 kB/s) 155s Selecting previously unselected package dnarrange. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 155s Preparing to unpack .../dnarrange_1.6.3-1_all.deb ... 155s Unpacking dnarrange (1.6.3-1) ... 155s Selecting previously unselected package python3-all. 156s Preparing to unpack .../python3-all_3.13.7-1_armhf.deb ... 156s Unpacking python3-all (3.13.7-1) ... 156s Setting up python3-all (3.13.7-1) ... 156s Setting up dnarrange (1.6.3-1) ... 163s autopkgtest [17:00:23]: test run-unit-test: [----------------------- 165s number of groups: 0 165s # dnarrange 165s 168s --- tests.out 2022-05-29 08:18:16.000000000 +0000 168s +++ - 2025-11-17 17:00:28.056274890 +0000 168s @@ -22,8 +22,10 @@ 168s -m PROB, --max-mismap=PROB 168s discard any alignment with mismap probability > PROB 168s (default=1.0) 168s + --insert=NAME find insertions of the sequence with this name 168s --shrink shrink the output 168s -v, --verbose show progress messages 168s + -w W, --width=W line-wrap width of group summary lines (default=79) 168s 168s TEST dnarrange alns.maf 168s # dnarrange alns.maf 168s autopkgtest [17:00:28]: test run-unit-test: -----------------------] 172s autopkgtest [17:00:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 172s run-unit-test FAIL non-zero exit status 1 176s autopkgtest [17:00:36]: @@@@@@@@@@@@@@@@@@@@ summary 176s run-unit-test FAIL non-zero exit status 1