0s autopkgtest [20:20:38]: starting date and time: 2025-11-15 20:20:38+0000 0s autopkgtest [20:20:38]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [20:20:38]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.90aarpf0/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:sentry-python --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sentry-python/2.22.0-1 -- lxd -r lxd-armhf-10.145.243.229 lxd-armhf-10.145.243.229:autopkgtest/ubuntu/resolute/armhf 20s autopkgtest [20:20:58]: testbed dpkg architecture: armhf 22s autopkgtest [20:21:00]: testbed apt version: 3.1.11 25s autopkgtest [20:21:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [20:21:05]: testbed release detected to be: None 34s autopkgtest [20:21:12]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 36s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [87.8 kB] 36s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 36s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 36s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [78.5 kB] 37s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [821 kB] 37s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 37s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 37s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [136 kB] 37s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted armhf Packages [940 B] 37s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [506 kB] 37s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [9140 B] 37s Get:13 http://ftpmaster.internal/ubuntu resolute/universe Sources [21.3 MB] 38s Get:14 http://ftpmaster.internal/ubuntu resolute/main Sources [1404 kB] 38s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1369 kB] 38s Get:16 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [15.2 MB] 38s Get:17 http://ftpmaster.internal/ubuntu resolute/multiverse armhf Packages [184 kB] 41s Fetched 41.2 MB in 6s (7376 kB/s) 42s Reading package lists... 48s autopkgtest [20:21:26]: upgrading testbed (apt dist-upgrade and autopurge) 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade... 51s The following packages will be upgraded: 51s python3-rpds-py 51s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 343 kB of archives. 51s After this operation, 726 kB of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-rpds-py armhf 0.27.1-2ubuntu1 [343 kB] 52s Fetched 343 kB in 0s (793 kB/s) 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65903 files and directories currently installed.) 52s Preparing to unpack .../python3-rpds-py_0.27.1-2ubuntu1_armhf.deb ... 52s Unpacking python3-rpds-py (0.27.1-2ubuntu1) over (0.21.0-2ubuntu2) ... 52s Setting up python3-rpds-py (0.27.1-2ubuntu1) ... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Solving dependencies... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s autopkgtest [20:21:36]: rebooting testbed after setup commands that affected boot 97s autopkgtest [20:22:15]: testbed running kernel: Linux 6.8.0-86-generic #87~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 29 09:26:46 UTC 2 121s autopkgtest [20:22:39]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 139s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 139s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 139s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 142s autopkgtest [20:23:00]: testing package custodian version 2024.10.16-1 143s autopkgtest [20:23:01]: build not needed 153s autopkgtest [20:23:11]: test test-custodian: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 156s The following NEW packages will be installed: 156s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 156s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 156s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 156s liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 156s libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 156s libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 python-matplotlib-data 156s python3-all python3-annotated-types python3-brotli python3-bson 156s python3-contourpy python3-custodian python3-cycler python3-decorator 156s python3-dnspython python3-email-validator python3-fastjsonschema 156s python3-fonttools python3-fs python3-iniconfig python3-joblib 156s python3-jupyter-core python3-kiwisolver python3-latexcodec python3-lxml 156s python3-lz4 python3-matplotlib python3-monty python3-mpmath python3-nbformat 156s python3-networkx python3-numpy python3-numpy-dev python3-palettable 156s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 156s python3-platformdirs python3-plotly python3-pluggy python3-psutil 156s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 156s python3-pytest python3-pytz python3-ruamel.yaml python3-ruamel.yaml.clib 156s python3-scipy python3-sentry-sdk python3-spglib python3-sympy 156s python3-tabulate python3-tenacity python3-tk python3-tqdm python3-traitlets 156s python3-tz python3-ufolib2 python3-uncertainties python3-zopfli 156s python3.13-tk python3.14-tk tk8.6-blt2.5 unicode-data x11-common 156s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 104 MB of archives. 156s After this operation, 510 MB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.2.4+ds-1ubuntu1 [141 kB] 156s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 156s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-7ubuntu1 [334 kB] 157s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 157s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.2.4+ds-1ubuntu1 [3724 kB] 157s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 157s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 157s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 157s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 157s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 157s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 157s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 157s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 157s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 157s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 157s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 157s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [527 kB] 157s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf blt armhf 2.5.3+dfsg-8 [4824 B] 157s Get:19 http://ftpmaster.internal/ubuntu resolute/universe armhf fonts-lyx all 2.4.4-2 [171 kB] 157s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 157s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-7ubuntu1 [129 kB] 157s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 157s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 157s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 157s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 157s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 157s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 157s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 157s Get:29 http://ftpmaster.internal/ubuntu resolute/universe armhf libqhull-r8.0 armhf 2020.2-7 [174 kB] 157s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libraqm0 armhf 0.10.3-1 [12.7 kB] 157s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 157s Get:32 http://ftpmaster.internal/ubuntu resolute/universe armhf libsymspg2 armhf 2.6.0-3build1 [193 kB] 157s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 157s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 157s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 157s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 157s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 157s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf libxslt1.1 armhf 1.1.43-0.3 [146 kB] 157s Get:39 http://ftpmaster.internal/ubuntu resolute/universe armhf libzopfli1 armhf 1.0.3-3 [91.7 kB] 157s Get:40 http://ftpmaster.internal/ubuntu resolute/universe armhf python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 157s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf python3-all armhf 3.13.7-1 [884 B] 157s Get:42 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-annotated-types all 0.7.0-1 [19.4 kB] 158s Get:43 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-brotli armhf 1.1.0-2build6 [327 kB] 158s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf python3-bson all 4.15.3-2 [44.1 kB] 158s Get:45 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-contourpy armhf 1.3.1-2 [267 kB] 158s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pytz all 2025.2-4 [32.3 kB] 158s Get:47 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas-lib armhf 2.3.3+dfsg-1ubuntu1 [8020 kB] 158s Get:48 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 158s Get:49 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pydantic-core armhf 2.27.2-3 [1536 kB] 158s Get:50 http://ftpmaster.internal/ubuntu resolute/main armhf python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 158s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-email-validator all 2.2.0-1 [28.5 kB] 158s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pydantic armhf 2.10.6-2 [288 kB] 158s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-tqdm all 4.67.1-5 [92.1 kB] 158s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ruamel.yaml.clib armhf 0.2.12+ds-1build1 [130 kB] 158s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 158s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-monty all 2025.3.3-1 [40.4 kB] 158s Get:57 http://ftpmaster.internal/ubuntu resolute/main armhf python3-psutil armhf 7.1.0-1ubuntu1 [189 kB] 158s Get:58 http://ftpmaster.internal/ubuntu resolute/main armhf libopenjp2-7 armhf 2.5.3-2.1 [174 kB] 158s Get:59 http://ftpmaster.internal/ubuntu resolute/main armhf python3-pil armhf 11.3.0-1ubuntu2 [465 kB] 158s Get:60 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-tk armhf 3.14.0-4 [105 kB] 158s Get:61 http://ftpmaster.internal/ubuntu resolute/main armhf python3.13-tk armhf 3.13.9-1 [104 kB] 158s Get:62 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tk armhf 3.13.9-1 [8944 B] 158s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pil.imagetk armhf 11.3.0-1ubuntu2 [9236 B] 158s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-cycler all 0.12.1-2 [9850 B] 158s Get:65 http://ftpmaster.internal/ubuntu resolute/main armhf python3-platformdirs all 4.3.7-1 [16.9 kB] 158s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 158s Get:67 http://ftpmaster.internal/ubuntu resolute/main armhf python3-lxml armhf 6.0.2-1 [2260 kB] 158s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-lz4 armhf 4.4.4+dfsg-3 [25.9 kB] 158s Get:69 http://ftpmaster.internal/ubuntu resolute/main armhf python3-decorator all 5.2.1-2 [28.1 kB] 158s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-scipy armhf 1.15.3-1ubuntu1 [19.7 MB] 159s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-mpmath all 1.3.0-2 [423 kB] 159s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-sympy all 1.14.0-2 [4306 kB] 159s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 159s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-zopfli armhf 0.4.0-1 [10.5 kB] 159s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf unicode-data all 16.0.0-1 [9513 kB] 159s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fonttools armhf 4.57.0-2build1 [1688 kB] 159s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-kiwisolver armhf 1.4.10~rc0-1 [77.8 kB] 159s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-matplotlib armhf 3.10.7+dfsg1-1 [17.2 MB] 159s Get:79 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf python3-sentry-sdk all 2.22.0-1 [199 kB] 159s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-custodian all 2024.10.16-1 [90.9 kB] 159s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-fastjsonschema all 2.21.1-1 [20.4 kB] 159s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-iniconfig all 2.1.0-1 [6840 B] 159s Get:83 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-joblib all 1.4.2-4 [205 kB] 159s Get:84 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 159s Get:85 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-jupyter-core all 5.7.2-5 [28.1 kB] 159s Get:86 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-latexcodec all 3.0.0-1 [16.6 kB] 159s Get:87 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-nbformat all 5.9.1-1 [41.2 kB] 159s Get:88 http://ftpmaster.internal/ubuntu resolute/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 160s Get:89 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-palettable all 3.3.3-3 [72.6 kB] 160s Get:90 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tz all 2025.2-4 [1746 B] 160s Get:91 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 160s Get:92 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-plotly all 5.20.0+dfsg-1 [2766 kB] 160s Get:93 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pluggy all 1.6.0-1 [21.0 kB] 160s Get:94 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pybtex all 0.25.1-1 [70.0 kB] 160s Get:95 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-spglib armhf 2.6.0-3build1 [31.3 kB] 160s Get:96 http://ftpmaster.internal/ubuntu resolute/main armhf python3-tabulate all 0.9.0-1 [45.3 kB] 160s Get:97 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-uncertainties all 3.2.3-3 [51.7 kB] 160s Get:98 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pymatgen armhf 2025.2.18+dfsg1-5 [2599 kB] 160s Get:99 http://ftpmaster.internal/ubuntu resolute/universe armhf python3-pytest all 8.3.5-2 [252 kB] 161s Fetched 104 MB in 4s (26.8 MB/s) 161s Selecting previously unselected package python3-numpy-dev:armhf. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65904 files and directories currently installed.) 161s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 161s Unpacking python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 161s Selecting previously unselected package libblas3:armhf. 161s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 161s Unpacking libblas3:armhf (3.12.1-7) ... 161s Selecting previously unselected package libgfortran5:armhf. 161s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_armhf.deb ... 161s Unpacking libgfortran5:armhf (15.2.0-7ubuntu1) ... 161s Selecting previously unselected package liblapack3:armhf. 161s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 161s Unpacking liblapack3:armhf (3.12.1-7) ... 161s Selecting previously unselected package python3-numpy. 161s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 161s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 161s Selecting previously unselected package libtcl8.6:armhf. 161s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 161s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 162s Selecting previously unselected package libfreetype6:armhf. 162s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 162s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 162s Selecting previously unselected package fonts-dejavu-mono. 162s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-mono (2.37-8) ... 162s Selecting previously unselected package fonts-dejavu-core. 162s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-core (2.37-8) ... 162s Selecting previously unselected package fontconfig-config. 162s Preparing to unpack .../09-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 162s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 162s Selecting previously unselected package libfontconfig1:armhf. 162s Preparing to unpack .../10-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 162s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 162s Selecting previously unselected package libxrender1:armhf. 162s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_armhf.deb ... 162s Unpacking libxrender1:armhf (1:0.9.12-1) ... 162s Selecting previously unselected package libxft2:armhf. 163s Preparing to unpack .../12-libxft2_2.3.6-1build1_armhf.deb ... 163s Unpacking libxft2:armhf (2.3.6-1build1) ... 163s Selecting previously unselected package x11-common. 163s Preparing to unpack .../13-x11-common_1%3a7.7+24ubuntu1_all.deb ... 163s Unpacking x11-common (1:7.7+24ubuntu1) ... 163s Selecting previously unselected package libxss1:armhf. 163s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 163s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 163s Selecting previously unselected package libtk8.6:armhf. 163s Preparing to unpack .../15-libtk8.6_8.6.17-1_armhf.deb ... 163s Unpacking libtk8.6:armhf (8.6.17-1) ... 163s Selecting previously unselected package tk8.6-blt2.5. 163s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-8_armhf.deb ... 163s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 163s Selecting previously unselected package blt. 163s Preparing to unpack .../17-blt_2.5.3+dfsg-8_armhf.deb ... 163s Unpacking blt (2.5.3+dfsg-8) ... 163s Selecting previously unselected package fonts-lyx. 163s Preparing to unpack .../18-fonts-lyx_2.4.4-2_all.deb ... 163s Unpacking fonts-lyx (2.4.4-2) ... 163s Selecting previously unselected package libdeflate0:armhf. 163s Preparing to unpack .../19-libdeflate0_1.23-2_armhf.deb ... 163s Unpacking libdeflate0:armhf (1.23-2) ... 163s Selecting previously unselected package libgomp1:armhf. 163s Preparing to unpack .../20-libgomp1_15.2.0-7ubuntu1_armhf.deb ... 163s Unpacking libgomp1:armhf (15.2.0-7ubuntu1) ... 163s Selecting previously unselected package libgraphite2-3:armhf. 163s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 163s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 163s Selecting previously unselected package libharfbuzz0b:armhf. 163s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_armhf.deb ... 163s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 163s Selecting previously unselected package libimagequant0:armhf. 163s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_armhf.deb ... 163s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 163s Selecting previously unselected package libjpeg-turbo8:armhf. 163s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 163s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 163s Selecting previously unselected package libjpeg8:armhf. 163s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_armhf.deb ... 163s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 163s Selecting previously unselected package liblcms2-2:armhf. 163s Preparing to unpack .../26-liblcms2-2_2.16-2_armhf.deb ... 163s Unpacking liblcms2-2:armhf (2.16-2) ... 163s Selecting previously unselected package liblerc4:armhf. 163s Preparing to unpack .../27-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 163s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 163s Selecting previously unselected package libqhull-r8.0:armhf. 163s Preparing to unpack .../28-libqhull-r8.0_2020.2-7_armhf.deb ... 163s Unpacking libqhull-r8.0:armhf (2020.2-7) ... 163s Selecting previously unselected package libraqm0:armhf. 163s Preparing to unpack .../29-libraqm0_0.10.3-1_armhf.deb ... 163s Unpacking libraqm0:armhf (0.10.3-1) ... 163s Selecting previously unselected package libsharpyuv0:armhf. 163s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_armhf.deb ... 163s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 164s Selecting previously unselected package libsymspg2:armhf. 164s Preparing to unpack .../31-libsymspg2_2.6.0-3build1_armhf.deb ... 164s Unpacking libsymspg2:armhf (2.6.0-3build1) ... 164s Selecting previously unselected package libjbig0:armhf. 164s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 164s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 164s Selecting previously unselected package libwebp7:armhf. 164s Preparing to unpack .../33-libwebp7_1.5.0-0.1_armhf.deb ... 164s Unpacking libwebp7:armhf (1.5.0-0.1) ... 164s Selecting previously unselected package libtiff6:armhf. 164s Preparing to unpack .../34-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 164s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 164s Selecting previously unselected package libwebpdemux2:armhf. 164s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_armhf.deb ... 164s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 164s Selecting previously unselected package libwebpmux3:armhf. 164s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_armhf.deb ... 164s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 164s Selecting previously unselected package libxslt1.1:armhf. 164s Preparing to unpack .../37-libxslt1.1_1.1.43-0.3_armhf.deb ... 164s Unpacking libxslt1.1:armhf (1.1.43-0.3) ... 164s Selecting previously unselected package libzopfli1. 164s Preparing to unpack .../38-libzopfli1_1.0.3-3_armhf.deb ... 164s Unpacking libzopfli1 (1.0.3-3) ... 164s Selecting previously unselected package python-matplotlib-data. 164s Preparing to unpack .../39-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 164s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 164s Selecting previously unselected package python3-all. 164s Preparing to unpack .../40-python3-all_3.13.7-1_armhf.deb ... 164s Unpacking python3-all (3.13.7-1) ... 165s Selecting previously unselected package python3-annotated-types. 165s Preparing to unpack .../41-python3-annotated-types_0.7.0-1_all.deb ... 165s Unpacking python3-annotated-types (0.7.0-1) ... 165s Selecting previously unselected package python3-brotli. 165s Preparing to unpack .../42-python3-brotli_1.1.0-2build6_armhf.deb ... 165s Unpacking python3-brotli (1.1.0-2build6) ... 165s Selecting previously unselected package python3-bson. 165s Preparing to unpack .../43-python3-bson_4.15.3-2_all.deb ... 165s Unpacking python3-bson (4.15.3-2) ... 165s Selecting previously unselected package python3-contourpy. 165s Preparing to unpack .../44-python3-contourpy_1.3.1-2_armhf.deb ... 165s Unpacking python3-contourpy (1.3.1-2) ... 165s Selecting previously unselected package python3-pytz. 165s Preparing to unpack .../45-python3-pytz_2025.2-4_all.deb ... 165s Unpacking python3-pytz (2025.2-4) ... 165s Selecting previously unselected package python3-pandas-lib:armhf. 165s Preparing to unpack .../46-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_armhf.deb ... 165s Unpacking python3-pandas-lib:armhf (2.3.3+dfsg-1ubuntu1) ... 165s Selecting previously unselected package python3-pandas. 165s Preparing to unpack .../47-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 165s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 165s Selecting previously unselected package python3-pydantic-core. 165s Preparing to unpack .../48-python3-pydantic-core_2.27.2-3_armhf.deb ... 165s Unpacking python3-pydantic-core (2.27.2-3) ... 165s Selecting previously unselected package python3-dnspython. 165s Preparing to unpack .../49-python3-dnspython_2.7.0-1ubuntu1_all.deb ... 165s Unpacking python3-dnspython (2.7.0-1ubuntu1) ... 166s Selecting previously unselected package python3-email-validator. 166s Preparing to unpack .../50-python3-email-validator_2.2.0-1_all.deb ... 166s Unpacking python3-email-validator (2.2.0-1) ... 166s Selecting previously unselected package python3-pydantic. 166s Preparing to unpack .../51-python3-pydantic_2.10.6-2_armhf.deb ... 166s Unpacking python3-pydantic (2.10.6-2) ... 166s Selecting previously unselected package python3-tqdm. 166s Preparing to unpack .../52-python3-tqdm_4.67.1-5_all.deb ... 166s Unpacking python3-tqdm (4.67.1-5) ... 166s Selecting previously unselected package python3-ruamel.yaml.clib. 166s Preparing to unpack .../53-python3-ruamel.yaml.clib_0.2.12+ds-1build1_armhf.deb ... 166s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 166s Selecting previously unselected package python3-ruamel.yaml. 166s Preparing to unpack .../54-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 166s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 166s Selecting previously unselected package python3-monty. 166s Preparing to unpack .../55-python3-monty_2025.3.3-1_all.deb ... 166s Unpacking python3-monty (2025.3.3-1) ... 166s Selecting previously unselected package python3-psutil. 166s Preparing to unpack .../56-python3-psutil_7.1.0-1ubuntu1_armhf.deb ... 166s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 166s Selecting previously unselected package libopenjp2-7:armhf. 166s Preparing to unpack .../57-libopenjp2-7_2.5.3-2.1_armhf.deb ... 166s Unpacking libopenjp2-7:armhf (2.5.3-2.1) ... 166s Selecting previously unselected package python3-pil:armhf. 166s Preparing to unpack .../58-python3-pil_11.3.0-1ubuntu2_armhf.deb ... 166s Unpacking python3-pil:armhf (11.3.0-1ubuntu2) ... 166s Selecting previously unselected package python3.14-tk. 166s Preparing to unpack .../59-python3.14-tk_3.14.0-4_armhf.deb ... 166s Unpacking python3.14-tk (3.14.0-4) ... 166s Selecting previously unselected package python3.13-tk. 166s Preparing to unpack .../60-python3.13-tk_3.13.9-1_armhf.deb ... 166s Unpacking python3.13-tk (3.13.9-1) ... 166s Selecting previously unselected package python3-tk:armhf. 166s Preparing to unpack .../61-python3-tk_3.13.9-1_armhf.deb ... 166s Unpacking python3-tk:armhf (3.13.9-1) ... 166s Selecting previously unselected package python3-pil.imagetk:armhf. 166s Preparing to unpack .../62-python3-pil.imagetk_11.3.0-1ubuntu2_armhf.deb ... 166s Unpacking python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 166s Selecting previously unselected package python3-cycler. 166s Preparing to unpack .../63-python3-cycler_0.12.1-2_all.deb ... 166s Unpacking python3-cycler (0.12.1-2) ... 166s Selecting previously unselected package python3-platformdirs. 166s Preparing to unpack .../64-python3-platformdirs_4.3.7-1_all.deb ... 166s Unpacking python3-platformdirs (4.3.7-1) ... 167s Selecting previously unselected package python3-fs. 167s Preparing to unpack .../65-python3-fs_2.4.16-9ubuntu1_all.deb ... 167s Unpacking python3-fs (2.4.16-9ubuntu1) ... 167s Selecting previously unselected package python3-lxml:armhf. 167s Preparing to unpack .../66-python3-lxml_6.0.2-1_armhf.deb ... 167s Unpacking python3-lxml:armhf (6.0.2-1) ... 167s Selecting previously unselected package python3-lz4. 167s Preparing to unpack .../67-python3-lz4_4.4.4+dfsg-3_armhf.deb ... 167s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 167s Selecting previously unselected package python3-decorator. 167s Preparing to unpack .../68-python3-decorator_5.2.1-2_all.deb ... 167s Unpacking python3-decorator (5.2.1-2) ... 167s Selecting previously unselected package python3-scipy. 167s Preparing to unpack .../69-python3-scipy_1.15.3-1ubuntu1_armhf.deb ... 167s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 168s Selecting previously unselected package python3-mpmath. 168s Preparing to unpack .../70-python3-mpmath_1.3.0-2_all.deb ... 168s Unpacking python3-mpmath (1.3.0-2) ... 168s Selecting previously unselected package python3-sympy. 168s Preparing to unpack .../71-python3-sympy_1.14.0-2_all.deb ... 168s Unpacking python3-sympy (1.14.0-2) ... 168s Selecting previously unselected package python3-ufolib2. 168s Preparing to unpack .../72-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 168s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 168s Selecting previously unselected package python3-zopfli. 168s Preparing to unpack .../73-python3-zopfli_0.4.0-1_armhf.deb ... 168s Unpacking python3-zopfli (0.4.0-1) ... 169s Selecting previously unselected package unicode-data. 169s Preparing to unpack .../74-unicode-data_16.0.0-1_all.deb ... 169s Unpacking unicode-data (16.0.0-1) ... 169s Selecting previously unselected package python3-fonttools. 169s Preparing to unpack .../75-python3-fonttools_4.57.0-2build1_armhf.deb ... 169s Unpacking python3-fonttools (4.57.0-2build1) ... 169s Selecting previously unselected package python3-kiwisolver. 169s Preparing to unpack .../76-python3-kiwisolver_1.4.10~rc0-1_armhf.deb ... 169s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 169s Selecting previously unselected package python3-matplotlib. 169s Preparing to unpack .../77-python3-matplotlib_3.10.7+dfsg1-1_armhf.deb ... 169s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 171s Selecting previously unselected package python3-sentry-sdk. 171s Preparing to unpack .../78-python3-sentry-sdk_2.22.0-1_all.deb ... 171s Unpacking python3-sentry-sdk (2.22.0-1) ... 171s Selecting previously unselected package python3-custodian. 171s Preparing to unpack .../79-python3-custodian_2024.10.16-1_all.deb ... 171s Unpacking python3-custodian (2024.10.16-1) ... 171s Selecting previously unselected package python3-fastjsonschema. 171s Preparing to unpack .../80-python3-fastjsonschema_2.21.1-1_all.deb ... 171s Unpacking python3-fastjsonschema (2.21.1-1) ... 171s Selecting previously unselected package python3-iniconfig. 171s Preparing to unpack .../81-python3-iniconfig_2.1.0-1_all.deb ... 171s Unpacking python3-iniconfig (2.1.0-1) ... 171s Selecting previously unselected package python3-joblib. 171s Preparing to unpack .../82-python3-joblib_1.4.2-4_all.deb ... 171s Unpacking python3-joblib (1.4.2-4) ... 171s Selecting previously unselected package python3-traitlets. 171s Preparing to unpack .../83-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 171s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 171s Selecting previously unselected package python3-jupyter-core. 171s Preparing to unpack .../84-python3-jupyter-core_5.7.2-5_all.deb ... 171s Unpacking python3-jupyter-core (5.7.2-5) ... 171s Selecting previously unselected package python3-latexcodec. 171s Preparing to unpack .../85-python3-latexcodec_3.0.0-1_all.deb ... 171s Unpacking python3-latexcodec (3.0.0-1) ... 171s Selecting previously unselected package python3-nbformat. 171s Preparing to unpack .../86-python3-nbformat_5.9.1-1_all.deb ... 171s Unpacking python3-nbformat (5.9.1-1) ... 171s Selecting previously unselected package python3-networkx. 171s Preparing to unpack .../87-python3-networkx_3.2.1-4ubuntu1_all.deb ... 171s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 171s Selecting previously unselected package python3-palettable. 171s Preparing to unpack .../88-python3-palettable_3.3.3-3_all.deb ... 171s Unpacking python3-palettable (3.3.3-3) ... 171s Selecting previously unselected package python3-tz. 171s Preparing to unpack .../89-python3-tz_2025.2-4_all.deb ... 171s Unpacking python3-tz (2025.2-4) ... 171s Selecting previously unselected package python3-tenacity. 171s Preparing to unpack .../90-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 171s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 171s Selecting previously unselected package python3-plotly. 171s Preparing to unpack .../91-python3-plotly_5.20.0+dfsg-1_all.deb ... 171s Unpacking python3-plotly (5.20.0+dfsg-1) ... 172s Selecting previously unselected package python3-pluggy. 172s Preparing to unpack .../92-python3-pluggy_1.6.0-1_all.deb ... 172s Unpacking python3-pluggy (1.6.0-1) ... 172s Selecting previously unselected package python3-pybtex. 173s Preparing to unpack .../93-python3-pybtex_0.25.1-1_all.deb ... 173s Unpacking python3-pybtex (0.25.1-1) ... 173s Selecting previously unselected package python3-spglib. 173s Preparing to unpack .../94-python3-spglib_2.6.0-3build1_armhf.deb ... 173s Unpacking python3-spglib (2.6.0-3build1) ... 173s Selecting previously unselected package python3-tabulate. 173s Preparing to unpack .../95-python3-tabulate_0.9.0-1_all.deb ... 173s Unpacking python3-tabulate (0.9.0-1) ... 173s Selecting previously unselected package python3-uncertainties. 173s Preparing to unpack .../96-python3-uncertainties_3.2.3-3_all.deb ... 173s Unpacking python3-uncertainties (3.2.3-3) ... 173s Selecting previously unselected package python3-pymatgen. 173s Preparing to unpack .../97-python3-pymatgen_2025.2.18+dfsg1-5_armhf.deb ... 173s Unpacking python3-pymatgen (2025.2.18+dfsg1-5) ... 173s Selecting previously unselected package python3-pytest. 173s Preparing to unpack .../98-python3-pytest_8.3.5-2_all.deb ... 173s Unpacking python3-pytest (8.3.5-2) ... 173s Setting up libgraphite2-3:armhf 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... 175s Setting up python3-networkx (3.2.1-4ubuntu1) ... 177s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 177s Setting up python3-annotated-types (0.7.0-1) ... 177s Setting up python3-platformdirs (4.3.7-1) ... 177s Setting up python3-psutil (7.1.0-1ubuntu1) ... 177s Setting up python3-tz (2025.2-4) ... 177s Setting up python3-fs (2.4.16-9ubuntu1) ... 177s Setting up unicode-data (16.0.0-1) ... 177s Setting up libsymspg2:armhf (2.6.0-3build1) ... 177s Setting up python3-bson (4.15.3-2) ... 177s Setting up python3-palettable (3.3.3-3) ... 178s Setting up python3-decorator (5.2.1-2) ... 178s Setting up libblas3:armhf (3.12.1-7) ... 178s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 178s Setting up libzopfli1 (1.0.3-3) ... 178s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 178s Setting up python3-brotli (1.1.0-2build6) ... 178s Setting up python3-cycler (0.12.1-2) ... 178s Setting up libimagequant0:armhf (2.18.0-1build1) ... 178s Setting up python3-sentry-sdk (2.22.0-1) ... 178s Setting up fonts-dejavu-mono (2.37-8) ... 178s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 179s Setting up python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 179s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 179s Setting up fonts-dejavu-core (2.37-8) ... 179s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 179s Setting up libgfortran5:armhf (15.2.0-7ubuntu1) ... 179s Setting up python3-pluggy (1.6.0-1) ... 179s Setting up libwebp7:armhf (1.5.0-0.1) ... 179s Setting up python3-pybtex (0.25.1-1) ... 179s Setting up python3-fastjsonschema (2.21.1-1) ... 179s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 179s Setting up python3-dnspython (2.7.0-1ubuntu1) ... 180s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 180s Setting up libxslt1.1:armhf (1.1.43-0.3) ... 180s Setting up libopenjp2-7:armhf (2.5.3-2.1) ... 180s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 180s Setting up python3-email-validator (2.2.0-1) ... 180s Setting up libxss1:armhf (1:1.2.3-1build3) ... 180s Setting up python3-mpmath (1.3.0-2) ... 181s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 181s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 181s Setting up python3-jupyter-core (5.7.2-5) ... 181s Setting up python3-uncertainties (3.2.3-3) ... 181s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 181s Setting up python3-sympy (1.14.0-2) ... 187s Setting up liblapack3:armhf (3.12.1-7) ... 187s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 187s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 187s Setting up python3-pytest (8.3.5-2) ... 188s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 188s Setting up python3-nbformat (5.9.1-1) ... 188s Setting up python3-zopfli (0.4.0-1) ... 188s Setting up 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210s Setting up python3-tk:armhf (3.13.9-1) ... 210s Setting up python3-pil.imagetk:armhf (11.3.0-1ubuntu2) ... 210s Setting up python3-fonttools (4.57.0-2build1) ... 211s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 211s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 212s Setting up python3-pymatgen (2025.2.18+dfsg1-5) ... 214s Setting up python3-custodian (2024.10.16-1) ... 214s Processing triggers for libc-bin (2.42-2ubuntu2) ... 214s Processing triggers for man-db (2.13.1-1) ... 222s autopkgtest [20:24:20]: test test-custodian: [----------------------- 225s ============================= test session starts ============================== 225s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.13 225s cachedir: .pytest_cache 225s rootdir: /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests 225s plugins: typeguard-4.4.2 229s collecting ... collected 162 items / 3 skipped 229s 229s tests/ansible/test_interpreter.py::TestModder::test_dict_modify PASSED [ 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PASSED [ 87%] 308s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 309s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 309s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 313s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 313s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 313s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 313s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 313s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 313s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 314s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 314s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 314s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 314s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 314s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 314s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 314s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 314s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 314s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 314s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 316s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 316s 316s =============================== warnings summary =============================== 316s tests/feff/test_jobs.py::test_setup 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmph2zobgia to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/feff/test_jobs.py::test_postprocess 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpszy0mp3z to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./bad_file.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py: 19 warnings 316s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 316s with zopen(os.path.join(directory, self.output_file)) as f: 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./zmatrix.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./coord_inputs.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./found_coords.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./linear_bend.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./missing_file.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./missing_mol.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 316s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:587: UserWarning: 316s ./syntax.out: Termination error or bad Gaussian output file ! 316s self._parse(self.filename) 316s 316s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpoei5x_am to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmprtrjh8g7 to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmplfk30h_k to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmp7lcebdib to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/test_custodian.py::CustodianTest::test_exitcode_error 316s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 316s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 316s 316s tests/vasp/test_handlers.py: 50 warnings 316s tests/vasp/test_jobs.py: 1 warning 316s tests/vasp/test_validators.py: 1 warning 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py: 50 warnings 316s tests/vasp/test_jobs.py: 2 warnings 316s tests/vasp/test_validators.py: 1 warning 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py: 50 warnings 316s tests/vasp/test_jobs.py: 1 warning 316s tests/vasp/test_validators.py: 1 warning 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py: 50 warnings 316s tests/vasp/test_jobs.py: 2 warnings 316s tests/vasp/test_validators.py: 1 warning 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 316s warnings.warn( 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 316s warnings.warn( 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:289: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 316s return cls.from_str(file.read(), names, read_velocities=read_velocities) 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 316s warnings.warn( 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 316s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 316s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 316s warnings.warn( 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2905: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 316s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 316s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 316s Electronic convergence reached: False. 316s Ionic convergence reached: True. 316s return Vasprun(filepath, **vasprun_kwargs) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 316s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 316s Electronic convergence reached: True. 316s Ionic convergence reached: False. 316s return Vasprun(filepath, **vasprun_kwargs) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 316s tests/vasp/test_io.py::TestIO::test_load_vasprun 316s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 316s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 316s tests/vasp/test_io.py::TestIO::test_load_vasprun 316s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s 316s potcar = self.get_potcars(path) 316s 316s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 316s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 316s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 316s 316s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 316s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 316s warnings.warn( 316s 316s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:861: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 316s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_setup 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/tmpgohempic to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/kspacing/tmpu2mevyps to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/update_incar/tmpibxikfmk to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/postprocess/tmpij_3atgt to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_continue 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/postprocess/tmp4a7jeu20 to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspJob::test_continue 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/postprocess/tmp_4gxfv_u to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 316s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/setup_neb/tmp8x2osmu7 to itself 316s warnings.warn(f"Cannot copy {fpath} to itself") 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:181: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 316s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s return cls(file.read(), symbol=symbol or None) 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s return cls(file.read(), symbol=symbol or None) 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s return cls(file.read(), symbol=symbol or None) 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2487: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 316s return cls(file.read(), symbol=symbol or None) 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 316s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 316s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 316s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 316s 316s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 316s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 316s 316s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 316s if potcar := self.get_potcars(path): 316s 316s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 316s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in 316s /tmp/autopkgtest.zWHTxv/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 316s potcar = self.get_potcars(path) 316s 316s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 316s =========== 162 passed, 3 skipped, 325 warnings in 90.89s (0:01:30) ============ 318s autopkgtest [20:25:56]: test test-custodian: -----------------------] 322s test-custodian PASS 322s autopkgtest [20:26:00]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 326s autopkgtest [20:26:04]: @@@@@@@@@@@@@@@@@@@@ summary 326s test-custodian PASS