0s autopkgtest [07:49:53]: starting date and time: 2025-12-03 07:49:53+0000 0s autopkgtest [07:49:53]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [07:49:53]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q0eronr1/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade assemblytics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- lxd -r lxd-armhf-10.145.243.52 lxd-armhf-10.145.243.52:autopkgtest/ubuntu/resolute/armhf 26s autopkgtest [07:50:19]: testbed dpkg architecture: armhf 28s autopkgtest [07:50:21]: testbed apt version: 3.1.12 32s autopkgtest [07:50:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 37s autopkgtest [07:50:30]: testbed release detected to be: None 49s autopkgtest [07:50:42]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 53s Get:2 http://ftpmaster.internal/ubuntu resolute InRelease [124 kB] 53s Get:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease [124 kB] 53s Get:4 http://ftpmaster.internal/ubuntu resolute-security InRelease [124 kB] 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [146 kB] 53s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [28.2 kB] 53s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1051 kB] 53s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf Packages [183 kB] 53s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe armhf Packages [709 kB] 53s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse armhf Packages [10.2 kB] 53s Get:11 http://ftpmaster.internal/ubuntu resolute/main Sources [1414 kB] 54s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf Packages [1366 kB] 54s Get:13 http://ftpmaster.internal/ubuntu resolute/universe armhf Packages [14.9 MB] 59s Fetched 20.3 MB in 7s (2742 kB/s) 60s Reading package lists... 66s autopkgtest [07:50:59]: upgrading testbed (apt dist-upgrade and autopurge) 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 70s The following packages will be upgraded: 70s libpython3-stdlib python3 python3-gdbm python3-minimal 72s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 72.9 kB of archives. 72s After this operation, 2048 B of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-minimal armhf 3.13.9-2 [28.1 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3 armhf 3.13.9-2 [23.0 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf libpython3-stdlib armhf 3.13.9-2 [10.8 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-gdbm armhf 3.13.9-2 [11.0 kB] 73s Fetched 72.9 kB in 2s (35.0 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 73s Preparing to unpack .../python3-minimal_3.13.9-2_armhf.deb ... 73s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 73s Setting up python3-minimal (3.13.9-2) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 73s Preparing to unpack .../python3_3.13.9-2_armhf.deb ... 73s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 73s Preparing to unpack .../libpython3-stdlib_3.13.9-2_armhf.deb ... 73s Unpacking libpython3-stdlib:armhf (3.13.9-2) over (3.13.7-1) ... 73s Preparing to unpack .../python3-gdbm_3.13.9-2_armhf.deb ... 73s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 73s Setting up python3-gdbm (3.13.9-2) ... 73s Setting up libpython3-stdlib:armhf (3.13.9-2) ... 73s Setting up python3 (3.13.9-2) ... 74s Processing triggers for man-db (2.13.1-1) ... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Solving dependencies... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [07:51:13]: rebooting testbed after setup commands that affected boot 127s autopkgtest [07:52:00]: testbed running kernel: Linux 6.8.0-87-generic #88~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 14 14:00:09 UTC 2 156s autopkgtest [07:52:29]: @@@@@@@@@@@@@@@@@@@@ apt-source assemblytics 170s Get:1 http://ftpmaster.internal/ubuntu resolute/universe assemblytics 1.2.1+dfsg-2 (dsc) [2072 B] 170s Get:2 http://ftpmaster.internal/ubuntu resolute/universe assemblytics 1.2.1+dfsg-2 (tar) [15.5 kB] 170s Get:3 http://ftpmaster.internal/ubuntu resolute/universe assemblytics 1.2.1+dfsg-2 (diff) [4640 B] 171s gpgv: Signature made Wed Dec 6 13:41:32 2023 UTC 171s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 171s gpgv: issuer "tillea@rki.de" 171s gpgv: Can't check signature: No public key 171s dpkg-source: warning: cannot verify inline signature for ./assemblytics_1.2.1+dfsg-2.dsc: no acceptable signature found 171s autopkgtest [07:52:44]: testing package assemblytics version 1.2.1+dfsg-2 173s autopkgtest [07:52:46]: build not needed 176s autopkgtest [07:52:49]: test run-unit-test: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Solving dependencies... 180s The following NEW packages will be installed: 180s assemblytics fontconfig fontconfig-config fonts-dejavu-core 180s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 180s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 180s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 180s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 180s libpython3.14-minimal libpython3.14-stdlib libsharpyuv0 libsm6 libtcl8.6 180s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 180s libxft2 libxrender1 libxss1 libxt6t64 python-is-python3 python3-all 180s python3-numpy python3-numpy-dev python3.14 python3.14-minimal r-base-core 180s r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2 180s r-cran-glue r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice 180s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 180s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 180s r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 180s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 180s r-cran-viridislite r-cran-withr unzip x11-common xdg-utils zip 180s 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 80.5 MB of archives. 180s After this operation, 165 MB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy-dev armhf 1:2.2.4+ds-1ubuntu1 [141 kB] 180s Get:2 http://ftpmaster.internal/ubuntu resolute/main armhf libblas3 armhf 3.12.1-7 [133 kB] 180s Get:3 http://ftpmaster.internal/ubuntu resolute/main armhf libgfortran5 armhf 15.2.0-9ubuntu1 [334 kB] 180s Get:4 http://ftpmaster.internal/ubuntu resolute/main armhf liblapack3 armhf 3.12.1-7 [2091 kB] 182s Get:5 http://ftpmaster.internal/ubuntu resolute/main armhf python3-numpy armhf 1:2.2.4+ds-1ubuntu1 [3724 kB] 182s Get:6 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-minimal armhf 3.14.0-4 [892 kB] 183s Get:7 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14-minimal armhf 3.14.0-4 [2146 kB] 183s Get:8 http://ftpmaster.internal/ubuntu resolute/main armhf zip armhf 3.0-15ubuntu2 [165 kB] 183s Get:9 http://ftpmaster.internal/ubuntu resolute/main armhf unzip armhf 6.0-28ubuntu7 [168 kB] 183s Get:10 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 183s Get:11 http://ftpmaster.internal/ubuntu resolute/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 183s Get:12 http://ftpmaster.internal/ubuntu resolute/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 183s Get:13 http://ftpmaster.internal/ubuntu resolute/main armhf libfreetype6 armhf 2.13.3+dfsg-1build1 [334 kB] 183s Get:14 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 183s Get:15 http://ftpmaster.internal/ubuntu resolute/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 183s Get:16 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig-config armhf 2.15.0-2.3ubuntu1 [38.1 kB] 183s Get:17 http://ftpmaster.internal/ubuntu resolute/main armhf libfontconfig1 armhf 2.15.0-2.3ubuntu1 [114 kB] 183s Get:18 http://ftpmaster.internal/ubuntu resolute/main armhf libpixman-1-0 armhf 0.46.4-1 [196 kB] 183s Get:19 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-render0 armhf 1.17.0-2build1 [15.5 kB] 183s Get:20 http://ftpmaster.internal/ubuntu resolute/main armhf libxcb-shm0 armhf 1.17.0-2build1 [5962 B] 183s Get:21 http://ftpmaster.internal/ubuntu resolute/main armhf libxrender1 armhf 1:0.9.12-1 [16.6 kB] 183s Get:22 http://ftpmaster.internal/ubuntu resolute/main armhf libcairo2 armhf 1.18.4-1build1 [489 kB] 183s Get:23 http://ftpmaster.internal/ubuntu resolute/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 183s Get:24 http://ftpmaster.internal/ubuntu resolute/main armhf libgomp1 armhf 15.2.0-9ubuntu1 [129 kB] 183s Get:25 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg-turbo8 armhf 2.1.5-4ubuntu2 [127 kB] 183s Get:26 http://ftpmaster.internal/ubuntu resolute/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 183s Get:27 http://ftpmaster.internal/ubuntu resolute/main armhf fontconfig armhf 2.15.0-2.3ubuntu1 [190 kB] 183s Get:28 http://ftpmaster.internal/ubuntu resolute/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 183s Get:29 http://ftpmaster.internal/ubuntu resolute/main armhf libharfbuzz0b armhf 12.1.0-1 [512 kB] 183s Get:30 http://ftpmaster.internal/ubuntu resolute/main armhf libthai-data all 0.1.29-2build2 [153 kB] 183s Get:31 http://ftpmaster.internal/ubuntu resolute/main armhf libdatrie1 armhf 0.2.14-1 [16.4 kB] 183s Get:32 http://ftpmaster.internal/ubuntu resolute/main armhf libthai0 armhf 0.1.29-2build2 [15.4 kB] 183s Get:33 http://ftpmaster.internal/ubuntu resolute/main armhf libpango-1.0-0 armhf 1.56.3-2 [217 kB] 184s Get:34 http://ftpmaster.internal/ubuntu resolute/main armhf libpangoft2-1.0-0 armhf 1.56.3-2 [44.0 kB] 184s Get:35 http://ftpmaster.internal/ubuntu resolute/main armhf libpangocairo-1.0-0 armhf 1.56.3-2 [25.3 kB] 184s Get:36 http://ftpmaster.internal/ubuntu resolute/main armhf libtcl8.6 armhf 8.6.17+dfsg-1 [918 kB] 184s Get:37 http://ftpmaster.internal/ubuntu resolute/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 184s Get:38 http://ftpmaster.internal/ubuntu resolute/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 184s Get:39 http://ftpmaster.internal/ubuntu resolute/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 184s Get:40 http://ftpmaster.internal/ubuntu resolute/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 184s Get:41 http://ftpmaster.internal/ubuntu resolute/main armhf libtiff6 armhf 4.7.0-3ubuntu3 [188 kB] 184s Get:42 http://ftpmaster.internal/ubuntu resolute/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 184s Get:43 http://ftpmaster.internal/ubuntu resolute/main armhf x11-common all 1:7.7+24ubuntu1 [22.4 kB] 184s Get:44 http://ftpmaster.internal/ubuntu resolute/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 184s Get:45 http://ftpmaster.internal/ubuntu resolute/main armhf libtk8.6 armhf 8.6.17-1 [694 kB] 184s Get:46 http://ftpmaster.internal/ubuntu resolute/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 184s Get:47 http://ftpmaster.internal/ubuntu resolute/main armhf libsm6 armhf 2:1.2.6-1 [15.3 kB] 184s Get:48 http://ftpmaster.internal/ubuntu resolute/main armhf libxt6t64 armhf 1:1.2.1-1.3 [145 kB] 184s Get:49 http://ftpmaster.internal/ubuntu resolute/universe armhf r-base-core armhf 4.5.2-1 [28.5 MB] 188s Get:50 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 188s Get:51 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 188s Get:52 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rlang armhf 1.1.5-3 [1700 kB] 188s Get:53 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 188s Get:54 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 188s Get:55 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 188s Get:56 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mass armhf 7.3-65-1 [1108 kB] 188s Get:57 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-lattice armhf 0.22-7-1 [1365 kB] 189s Get:58 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-nlme armhf 3.1.168-1 [2304 kB] 189s Get:59 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-matrix armhf 1.7-4-1 [4139 kB] 189s Get:60 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-mgcv armhf 1.9-3-1 [3289 kB] 190s Get:61 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 190s Get:62 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 190s Get:63 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-colorspace armhf 2.1-1+dfsg-1 [1561 kB] 190s Get:64 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-munsell all 0.5.1-1 [213 kB] 190s Get:65 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 190s Get:66 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 190s Get:67 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 190s Get:68 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-scales all 1.3.0-1 [603 kB] 190s Get:69 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-fansi armhf 1.0.6-2 [620 kB] 190s Get:70 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 190s Get:71 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 190s Get:72 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 190s Get:73 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 190s Get:74 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 190s Get:75 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 190s Get:76 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 190s Get:77 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 191s Get:78 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-littler armhf 0.3.21-2 [79.7 kB] 191s Get:79 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 191s Get:80 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-rcpp armhf 1.1.0-1 [2009 kB] 191s Get:81 http://ftpmaster.internal/ubuntu resolute/universe armhf r-cran-plyr armhf 1.8.9-1 [832 kB] 191s Get:82 http://ftpmaster.internal/ubuntu resolute/universe armhf assemblytics all 1.2.1+dfsg-2 [19.1 kB] 191s Get:83 http://ftpmaster.internal/ubuntu resolute/main armhf libpython3.14-stdlib armhf 3.14.0-4 [2270 kB] 191s Get:84 http://ftpmaster.internal/ubuntu resolute/main armhf python-is-python3 all 3.13.3-1 [2768 B] 191s Get:85 http://ftpmaster.internal/ubuntu resolute/main armhf python3.14 armhf 3.14.0-4 [805 kB] 191s Get:86 http://ftpmaster.internal/ubuntu resolute-proposed/main armhf python3-all armhf 3.13.9-2 [892 B] 192s Preconfiguring packages ... 193s Fetched 80.5 MB in 12s (6783 kB/s) 193s Selecting previously unselected package python3-numpy-dev:armhf. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65928 files and directories currently installed.) 193s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 193s Unpacking python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 193s Selecting previously unselected package libblas3:armhf. 193s Preparing to unpack .../01-libblas3_3.12.1-7_armhf.deb ... 193s Unpacking libblas3:armhf (3.12.1-7) ... 193s Selecting previously unselected package libgfortran5:armhf. 193s Preparing to unpack .../02-libgfortran5_15.2.0-9ubuntu1_armhf.deb ... 193s Unpacking libgfortran5:armhf (15.2.0-9ubuntu1) ... 193s Selecting previously unselected package liblapack3:armhf. 193s Preparing to unpack .../03-liblapack3_3.12.1-7_armhf.deb ... 193s Unpacking liblapack3:armhf (3.12.1-7) ... 193s Selecting previously unselected package python3-numpy. 193s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_armhf.deb ... 193s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 193s Selecting previously unselected package libpython3.14-minimal:armhf. 193s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_armhf.deb ... 193s Unpacking libpython3.14-minimal:armhf (3.14.0-4) ... 193s Selecting previously unselected package python3.14-minimal. 193s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_armhf.deb ... 193s Unpacking python3.14-minimal (3.14.0-4) ... 193s Selecting previously unselected package zip. 193s Preparing to unpack .../07-zip_3.0-15ubuntu2_armhf.deb ... 193s Unpacking zip (3.0-15ubuntu2) ... 193s Selecting previously unselected package unzip. 193s Preparing to unpack .../08-unzip_6.0-28ubuntu7_armhf.deb ... 193s Unpacking unzip (6.0-28ubuntu7) ... 193s Selecting previously unselected package libpaper2:armhf. 193s Preparing to unpack .../09-libpaper2_2.2.5-0.3_armhf.deb ... 193s Unpacking libpaper2:armhf (2.2.5-0.3) ... 193s Selecting previously unselected package libpaper-utils. 193s Preparing to unpack .../10-libpaper-utils_2.2.5-0.3_armhf.deb ... 193s Unpacking libpaper-utils (2.2.5-0.3) ... 193s Selecting previously unselected package xdg-utils. 193s Preparing to unpack .../11-xdg-utils_1.2.1-2ubuntu1_all.deb ... 193s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 194s Selecting previously unselected package libfreetype6:armhf. 194s Preparing to unpack .../12-libfreetype6_2.13.3+dfsg-1build1_armhf.deb ... 194s Unpacking libfreetype6:armhf (2.13.3+dfsg-1build1) ... 194s Selecting previously unselected package fonts-dejavu-mono. 194s Preparing to unpack .../13-fonts-dejavu-mono_2.37-8_all.deb ... 194s Unpacking fonts-dejavu-mono (2.37-8) ... 194s Selecting previously unselected package fonts-dejavu-core. 194s Preparing to unpack .../14-fonts-dejavu-core_2.37-8_all.deb ... 194s Unpacking fonts-dejavu-core (2.37-8) ... 194s Selecting previously unselected package fontconfig-config. 194s Preparing to unpack .../15-fontconfig-config_2.15.0-2.3ubuntu1_armhf.deb ... 194s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 194s Selecting previously unselected package libfontconfig1:armhf. 194s Preparing to unpack .../16-libfontconfig1_2.15.0-2.3ubuntu1_armhf.deb ... 194s Unpacking libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 194s Selecting previously unselected package libpixman-1-0:armhf. 194s Preparing to unpack .../17-libpixman-1-0_0.46.4-1_armhf.deb ... 194s Unpacking libpixman-1-0:armhf (0.46.4-1) ... 195s Selecting previously unselected package libxcb-render0:armhf. 195s Preparing to unpack .../18-libxcb-render0_1.17.0-2build1_armhf.deb ... 195s Unpacking libxcb-render0:armhf (1.17.0-2build1) ... 195s Selecting previously unselected package libxcb-shm0:armhf. 195s Preparing to unpack .../19-libxcb-shm0_1.17.0-2build1_armhf.deb ... 195s Unpacking libxcb-shm0:armhf (1.17.0-2build1) ... 195s Selecting previously unselected package libxrender1:armhf. 195s Preparing to unpack .../20-libxrender1_1%3a0.9.12-1_armhf.deb ... 195s Unpacking libxrender1:armhf (1:0.9.12-1) ... 195s Selecting previously unselected package libcairo2:armhf. 195s Preparing to unpack .../21-libcairo2_1.18.4-1build1_armhf.deb ... 195s Unpacking libcairo2:armhf (1.18.4-1build1) ... 195s Selecting previously unselected package libdeflate0:armhf. 195s Preparing to unpack .../22-libdeflate0_1.23-2_armhf.deb ... 195s Unpacking libdeflate0:armhf (1.23-2) ... 195s Selecting previously unselected package libgomp1:armhf. 195s Preparing to unpack .../23-libgomp1_15.2.0-9ubuntu1_armhf.deb ... 195s Unpacking libgomp1:armhf (15.2.0-9ubuntu1) ... 195s Selecting previously unselected package libjpeg-turbo8:armhf. 195s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_armhf.deb ... 195s Unpacking libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 195s Selecting previously unselected package libjpeg8:armhf. 195s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_armhf.deb ... 195s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 195s Selecting previously unselected package fontconfig. 195s Preparing to unpack .../26-fontconfig_2.15.0-2.3ubuntu1_armhf.deb ... 195s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 195s Selecting previously unselected package libgraphite2-3:armhf. 195s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 195s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 195s Selecting previously unselected package libharfbuzz0b:armhf. 195s Preparing to unpack .../28-libharfbuzz0b_12.1.0-1_armhf.deb ... 195s Unpacking libharfbuzz0b:armhf (12.1.0-1) ... 195s Selecting previously unselected package libthai-data. 195s Preparing to unpack .../29-libthai-data_0.1.29-2build2_all.deb ... 195s Unpacking libthai-data (0.1.29-2build2) ... 195s Selecting previously unselected package libdatrie1:armhf. 195s Preparing to unpack .../30-libdatrie1_0.2.14-1_armhf.deb ... 195s Unpacking libdatrie1:armhf (0.2.14-1) ... 195s Selecting previously unselected package libthai0:armhf. 195s Preparing to unpack .../31-libthai0_0.1.29-2build2_armhf.deb ... 195s Unpacking libthai0:armhf (0.1.29-2build2) ... 195s Selecting previously unselected package libpango-1.0-0:armhf. 195s Preparing to unpack .../32-libpango-1.0-0_1.56.3-2_armhf.deb ... 195s Unpacking libpango-1.0-0:armhf (1.56.3-2) ... 195s Selecting previously unselected package libpangoft2-1.0-0:armhf. 195s Preparing to unpack .../33-libpangoft2-1.0-0_1.56.3-2_armhf.deb ... 195s Unpacking libpangoft2-1.0-0:armhf (1.56.3-2) ... 196s Selecting previously unselected package libpangocairo-1.0-0:armhf. 196s Preparing to unpack .../34-libpangocairo-1.0-0_1.56.3-2_armhf.deb ... 196s Unpacking libpangocairo-1.0-0:armhf (1.56.3-2) ... 196s Selecting previously unselected package libtcl8.6:armhf. 196s Preparing to unpack .../35-libtcl8.6_8.6.17+dfsg-1_armhf.deb ... 196s Unpacking libtcl8.6:armhf (8.6.17+dfsg-1) ... 196s Selecting previously unselected package libjbig0:armhf. 196s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 196s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 196s Selecting previously unselected package liblerc4:armhf. 196s Preparing to unpack .../37-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 196s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 196s Selecting previously unselected package libsharpyuv0:armhf. 196s Preparing to unpack .../38-libsharpyuv0_1.5.0-0.1_armhf.deb ... 196s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 196s Selecting previously unselected package libwebp7:armhf. 196s Preparing to unpack .../39-libwebp7_1.5.0-0.1_armhf.deb ... 196s Unpacking libwebp7:armhf (1.5.0-0.1) ... 196s Selecting previously unselected package libtiff6:armhf. 196s Preparing to unpack .../40-libtiff6_4.7.0-3ubuntu3_armhf.deb ... 196s Unpacking libtiff6:armhf (4.7.0-3ubuntu3) ... 196s Selecting previously unselected package libxft2:armhf. 196s Preparing to unpack .../41-libxft2_2.3.6-1build1_armhf.deb ... 196s Unpacking libxft2:armhf (2.3.6-1build1) ... 196s Selecting previously unselected package x11-common. 196s Preparing to unpack .../42-x11-common_1%3a7.7+24ubuntu1_all.deb ... 196s Unpacking x11-common (1:7.7+24ubuntu1) ... 196s Selecting previously unselected package libxss1:armhf. 196s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_armhf.deb ... 196s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 196s Selecting previously unselected package libtk8.6:armhf. 196s Preparing to unpack .../44-libtk8.6_8.6.17-1_armhf.deb ... 196s Unpacking libtk8.6:armhf (8.6.17-1) ... 196s Selecting previously unselected package libice6:armhf. 196s Preparing to unpack .../45-libice6_2%3a1.1.1-1_armhf.deb ... 196s Unpacking libice6:armhf (2:1.1.1-1) ... 196s Selecting previously unselected package libsm6:armhf. 196s Preparing to unpack .../46-libsm6_2%3a1.2.6-1_armhf.deb ... 196s Unpacking libsm6:armhf (2:1.2.6-1) ... 196s Selecting previously unselected package libxt6t64:armhf. 196s Preparing to unpack .../47-libxt6t64_1%3a1.2.1-1.3_armhf.deb ... 196s Unpacking libxt6t64:armhf (1:1.2.1-1.3) ... 196s Selecting previously unselected package r-base-core. 196s Preparing to unpack .../48-r-base-core_4.5.2-1_armhf.deb ... 196s Unpacking r-base-core (4.5.2-1) ... 197s Selecting previously unselected package r-cran-cli. 197s Preparing to unpack .../49-r-cran-cli_3.6.4-1_armhf.deb ... 197s Unpacking r-cran-cli (3.6.4-1) ... 197s Selecting previously unselected package r-cran-glue. 197s Preparing to unpack .../50-r-cran-glue_1.8.0-1_armhf.deb ... 197s Unpacking r-cran-glue (1.8.0-1) ... 197s Selecting previously unselected package r-cran-rlang. 197s Preparing to unpack .../51-r-cran-rlang_1.1.5-3_armhf.deb ... 197s Unpacking r-cran-rlang (1.1.5-3) ... 197s Selecting previously unselected package r-cran-lifecycle. 197s Preparing to unpack .../52-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 197s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 197s Selecting previously unselected package r-cran-gtable. 197s Preparing to unpack .../53-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 197s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 197s Selecting previously unselected package r-cran-isoband. 197s Preparing to unpack .../54-r-cran-isoband_0.2.7-1_armhf.deb ... 197s Unpacking r-cran-isoband (0.2.7-1) ... 198s Selecting previously unselected package r-cran-mass. 198s Preparing to unpack .../55-r-cran-mass_7.3-65-1_armhf.deb ... 198s Unpacking r-cran-mass (7.3-65-1) ... 198s Selecting previously unselected package r-cran-lattice. 198s Preparing to unpack .../56-r-cran-lattice_0.22-7-1_armhf.deb ... 198s Unpacking r-cran-lattice (0.22-7-1) ... 198s Selecting previously unselected package r-cran-nlme. 198s Preparing to unpack .../57-r-cran-nlme_3.1.168-1_armhf.deb ... 198s Unpacking r-cran-nlme (3.1.168-1) ... 198s Selecting previously unselected package r-cran-matrix. 198s Preparing to unpack .../58-r-cran-matrix_1.7-4-1_armhf.deb ... 198s Unpacking r-cran-matrix (1.7-4-1) ... 198s Selecting previously unselected package r-cran-mgcv. 198s Preparing to unpack .../59-r-cran-mgcv_1.9-3-1_armhf.deb ... 198s Unpacking r-cran-mgcv (1.9-3-1) ... 198s Selecting previously unselected package r-cran-farver. 198s Preparing to unpack .../60-r-cran-farver_2.1.2-1_armhf.deb ... 198s Unpacking r-cran-farver (2.1.2-1) ... 198s Selecting previously unselected package r-cran-labeling. 198s Preparing to unpack .../61-r-cran-labeling_0.4.3-1_all.deb ... 198s Unpacking r-cran-labeling (0.4.3-1) ... 198s Selecting previously unselected package r-cran-colorspace. 198s Preparing to unpack .../62-r-cran-colorspace_2.1-1+dfsg-1_armhf.deb ... 198s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 198s Selecting previously unselected package r-cran-munsell. 198s Preparing to unpack .../63-r-cran-munsell_0.5.1-1_all.deb ... 198s Unpacking r-cran-munsell (0.5.1-1) ... 198s Selecting previously unselected package r-cran-r6. 198s Preparing to unpack .../64-r-cran-r6_2.6.1-1_all.deb ... 198s Unpacking r-cran-r6 (2.6.1-1) ... 199s Selecting previously unselected package r-cran-rcolorbrewer. 199s Preparing to unpack .../65-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 199s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 199s Selecting previously unselected package r-cran-viridislite. 199s Preparing to unpack .../66-r-cran-viridislite_0.4.2-2_all.deb ... 199s Unpacking r-cran-viridislite (0.4.2-2) ... 199s Selecting previously unselected package r-cran-scales. 199s Preparing to unpack .../67-r-cran-scales_1.3.0-1_all.deb ... 199s Unpacking r-cran-scales (1.3.0-1) ... 199s Selecting previously unselected package r-cran-fansi. 199s Preparing to unpack .../68-r-cran-fansi_1.0.6-2_armhf.deb ... 199s Unpacking r-cran-fansi (1.0.6-2) ... 199s Selecting previously unselected package r-cran-magrittr. 199s Preparing to unpack .../69-r-cran-magrittr_2.0.3-1_armhf.deb ... 199s Unpacking r-cran-magrittr (2.0.3-1) ... 199s Selecting previously unselected package r-cran-utf8. 199s Preparing to unpack .../70-r-cran-utf8_1.2.4-1_armhf.deb ... 199s Unpacking r-cran-utf8 (1.2.4-1) ... 199s Selecting previously unselected package r-cran-vctrs. 199s Preparing to unpack .../71-r-cran-vctrs_0.6.5-1_armhf.deb ... 199s Unpacking r-cran-vctrs (0.6.5-1) ... 199s Selecting previously unselected package r-cran-pillar. 199s Preparing to unpack .../72-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 199s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-pkgconfig. 199s Preparing to unpack .../73-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 199s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 199s Selecting previously unselected package r-cran-tibble. 199s Preparing to unpack .../74-r-cran-tibble_3.2.1+dfsg-3_armhf.deb ... 199s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 199s Selecting previously unselected package r-cran-withr. 199s Preparing to unpack .../75-r-cran-withr_3.0.2+dfsg-1_all.deb ... 199s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 199s Selecting previously unselected package r-cran-ggplot2. 199s Preparing to unpack .../76-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 199s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 200s Selecting previously unselected package r-cran-littler. 200s Preparing to unpack .../77-r-cran-littler_0.3.21-2_armhf.deb ... 200s Unpacking r-cran-littler (0.3.21-2) ... 200s Selecting previously unselected package r-cran-pkgkitten. 200s Preparing to unpack .../78-r-cran-pkgkitten_0.2.4-1_all.deb ... 200s Unpacking r-cran-pkgkitten (0.2.4-1) ... 200s Selecting previously unselected package r-cran-rcpp. 200s Preparing to unpack .../79-r-cran-rcpp_1.1.0-1_armhf.deb ... 200s Unpacking r-cran-rcpp (1.1.0-1) ... 200s Selecting previously unselected package r-cran-plyr. 200s Preparing to unpack .../80-r-cran-plyr_1.8.9-1_armhf.deb ... 200s Unpacking r-cran-plyr (1.8.9-1) ... 200s Selecting previously unselected package assemblytics. 200s Preparing to unpack .../81-assemblytics_1.2.1+dfsg-2_all.deb ... 200s Unpacking assemblytics (1.2.1+dfsg-2) ... 200s Selecting previously unselected package libpython3.14-stdlib:armhf. 200s Preparing to unpack .../82-libpython3.14-stdlib_3.14.0-4_armhf.deb ... 200s Unpacking libpython3.14-stdlib:armhf (3.14.0-4) ... 200s Selecting previously unselected package python-is-python3. 200s Preparing to unpack .../83-python-is-python3_3.13.3-1_all.deb ... 200s Unpacking python-is-python3 (3.13.3-1) ... 200s Selecting previously unselected package python3.14. 200s Preparing to unpack .../84-python3.14_3.14.0-4_armhf.deb ... 200s Unpacking python3.14 (3.14.0-4) ... 200s Selecting previously unselected package python3-all. 200s Preparing to unpack .../85-python3-all_3.13.9-2_armhf.deb ... 200s Unpacking python3-all (3.13.9-2) ... 200s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 200s Setting up libpixman-1-0:armhf (0.46.4-1) ... 200s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 200s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 200s Setting up libxrender1:armhf (1:0.9.12-1) ... 200s Setting up libdatrie1:armhf (0.2.14-1) ... 200s Setting up libxcb-render0:armhf (1.17.0-2build1) ... 200s Setting up unzip (6.0-28ubuntu7) ... 200s Setting up libpython3.14-minimal:armhf (3.14.0-4) ... 200s Setting up x11-common (1:7.7+24ubuntu1) ... 201s Setting up libdeflate0:armhf (1.23-2) ... 201s Setting up libxcb-shm0:armhf (1.17.0-2build1) ... 201s Setting up libgomp1:armhf (15.2.0-9ubuntu1) ... 201s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 201s Setting up zip (3.0-15ubuntu2) ... 201s Setting up libblas3:armhf (3.12.1-7) ... 201s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 201s Setting up libfreetype6:armhf (2.13.3+dfsg-1build1) ... 201s Setting up fonts-dejavu-mono (2.37-8) ... 201s Setting up python3-numpy-dev:armhf (1:2.2.4+ds-1ubuntu1) ... 201s Setting up libtcl8.6:armhf (8.6.17+dfsg-1) ... 202s Setting up fonts-dejavu-core (2.37-8) ... 202s Setting up libjpeg-turbo8:armhf (2.1.5-4ubuntu2) ... 202s Setting up libgfortran5:armhf (15.2.0-9ubuntu1) ... 202s Setting up libwebp7:armhf (1.5.0-0.1) ... 202s Setting up libharfbuzz0b:armhf (12.1.0-1) ... 202s Setting up libthai-data (0.1.29-2build2) ... 202s Setting up libxss1:armhf (1:1.2.3-1build3) ... 202s Setting up libpaper2:armhf (2.2.5-0.3) ... 202s Setting up python-is-python3 (3.13.3-1) ... 202s Setting up xdg-utils (1.2.1-2ubuntu1) ... 202s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 202s Setting up python3.14-minimal (3.14.0-4) ... 204s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 204s Setting up libice6:armhf (2:1.1.1-1) ... 204s Setting up liblapack3:armhf (3.12.1-7) ... 204s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 204s Setting up libpython3.14-stdlib:armhf (3.14.0-4) ... 204s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 204s Setting up libpaper-utils (2.2.5-0.3) ... 204s Setting up libthai0:armhf (0.1.29-2build2) ... 204s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 210s Setting up libtiff6:armhf (4.7.0-3ubuntu3) ... 210s Setting up libfontconfig1:armhf (2.15.0-2.3ubuntu1) ... 210s Setting up python3.14 (3.14.0-4) ... 212s Setting up libsm6:armhf (2:1.2.6-1) ... 212s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 214s Regenerating fonts cache... done. 214s Setting up libxft2:armhf (2.3.6-1build1) ... 214s Setting up libtk8.6:armhf (8.6.17-1) ... 214s Setting up libpango-1.0-0:armhf (1.56.3-2) ... 214s Setting up python3-all (3.13.9-2) ... 214s Setting up libcairo2:armhf (1.18.4-1build1) ... 214s Setting up libxt6t64:armhf (1:1.2.1-1.3) ... 214s Setting up libpangoft2-1.0-0:armhf (1.56.3-2) ... 214s Setting up libpangocairo-1.0-0:armhf (1.56.3-2) ... 214s Setting up r-base-core (4.5.2-1) ... 214s Creating config file /etc/R/Renviron with new version 214s Setting up r-cran-labeling (0.4.3-1) ... 214s Setting up r-cran-lattice (0.22-7-1) ... 214s Setting up r-cran-nlme (3.1.168-1) ... 214s Setting up r-cran-farver (2.1.2-1) ... 214s Setting up r-cran-viridislite (0.4.2-2) ... 214s Setting up r-cran-r6 (2.6.1-1) ... 214s Setting up r-cran-pkgkitten (0.2.4-1) ... 214s Setting up r-cran-magrittr (2.0.3-1) ... 214s Setting up r-cran-littler (0.3.21-2) ... 214s Setting up r-cran-rcpp (1.1.0-1) ... 214s Setting up r-cran-rlang (1.1.5-3) ... 214s Setting up r-cran-withr (3.0.2+dfsg-1) ... 214s Setting up r-cran-fansi (1.0.6-2) ... 214s Setting up r-cran-mass (7.3-65-1) ... 214s Setting up r-cran-glue (1.8.0-1) ... 214s Setting up r-cran-cli (3.6.4-1) ... 214s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 214s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 214s Setting up r-cran-utf8 (1.2.4-1) ... 214s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 214s Setting up r-cran-plyr (1.8.9-1) ... 214s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 214s Setting up r-cran-isoband (0.2.7-1) ... 214s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 214s Setting up r-cran-matrix (1.7-4-1) ... 214s Setting up r-cran-mgcv (1.9-3-1) ... 214s Setting up r-cran-vctrs (0.6.5-1) ... 214s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 214s Setting up r-cran-munsell (0.5.1-1) ... 214s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 214s Setting up r-cran-scales (1.3.0-1) ... 214s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 214s Setting up assemblytics (1.2.1+dfsg-2) ... 214s Processing triggers for systemd (257.9-0ubuntu2) ... 214s Processing triggers for man-db (2.13.1-1) ... 215s Processing triggers for install-info (7.2-5) ... 215s Processing triggers for libc-bin (2.42-2ubuntu2) ... 226s autopkgtest [07:53:39]: test run-unit-test: [----------------------- 230s Input delta file: sample.delta 230s Output prefix: myfirstorganism 230s Unique anchor length: 10000 230s Minimum variant size to call: 10000 230s Maximum variant size to call: 50 230s Logging progress updates in myfirstorganism/progress.log 230s script path: /usr/share/assemblytics/bin 230s 1. Filter delta file 230s Keeping fully unique alignments even if they are below the unique anchor length of 10000 bp 230s Use --unique-length X to set the unique anchor length requirement. Default is 10000, such that each alignment must have at least 10000 bp from the query that are not included in any other alignments. 230s Detected uncompressed delta file. Reading... 230s 230s 230s Header (2 lines): 230s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 230s NUCMER 230s 230s 230s First read through the file: 0 seconds for 0 query-reference combinations 230s Filtering alignments of 1 queries 230s Progress: 100% 230s Progress: 100% 230s Deciding which alignments to keep: 0 seconds for 1 queries 230s Detected uncompressed delta file. Reading... 230s Reading file and recording all the entries we decided to keep: 0 seconds for 54 total lines in file 230s 2. Finding variants between alignments 230s Loaded 6 alignments 230s 3. Finding variants within alignments 230s Detected gzipped delta file. Reading... 230s 230s 230s Header (2 lines): 230s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 230s NUCMER 230s 230s 230s 4. Combine variants between and within alignments 232s Error in revalue(bed$type, c(Repeat_expansion = "Repeat expansion", Repeat_contraction = "Repeat contraction", : 232s x is not a factor or a character vector. 232s Execution halted 234s Warning messages: 234s 1: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 234s ℹ Please use `linewidth` instead. 234s 2: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. 234s ℹ Please use the `linewidth` argument instead. 234s null device 234s 1 237s Warning message: 237s Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 237s ℹ Please use `linewidth` instead. 237s adding: myfirstorganism.Assemblytics.Dotplot_filtered.png (deflated 11%) 237s adding: myfirstorganism.Assemblytics.Nchart.pdf (deflated 11%) 237s adding: myfirstorganism.Assemblytics.Nchart.png (deflated 6%) 237s adding: myfirstorganism.Assemblytics.unique_length_filtered_l10000.delta.gz (stored 0%) 237s adding: myfirstorganism.Assemblytics_assembly_stats.txt (deflated 58%) 237s adding: myfirstorganism.Assemblytics_structural_variants.bed (deflated 26%) 237s adding: myfirstorganism.Assemblytics_structural_variants.summary (deflated 49%) 237s adding: myfirstorganism.Assemblytics_structural_variants.summary.csv (deflated 35%) 237s PASS 238s autopkgtest [07:53:51]: test run-unit-test: -----------------------] 243s autopkgtest [07:53:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 243s run-unit-test PASS 249s autopkgtest [07:54:02]: @@@@@@@@@@@@@@@@@@@@ summary 249s run-unit-test PASS