0s autopkgtest [08:52:18]: starting date and time: 2026-02-05 08:52:18+0000 0s autopkgtest [08:52:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [08:52:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tl5qgjzl/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-23.secgroup --name adt-resolute-arm64-transtermhp-20260205-085218-juju-7f2275-prod-proposed-migration-environment-2-30eddb2c-49e3-40f1-99d8-8748d8d046bd --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-transtermhp-20260205-085218-juju-7f2275-prod-proposed-migration-environment-2-30eddb2c-49e3-40f1-99d8-8748d8d046bd from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 84s autopkgtest [08:53:42]: testbed dpkg architecture: arm64 89s autopkgtest [08:53:47]: testbed apt version: 3.1.14 90s autopkgtest [08:53:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 93s autopkgtest [08:53:51]: testbed release detected to be: None 96s autopkgtest [08:53:54]: updating testbed package index (apt update) 96s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 96s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 96s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 96s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 96s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 96s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 96s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 96s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [269 kB] 96s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7264 B] 96s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 96s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 96s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1556 kB] 96s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [41.9 kB] 97s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 97s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [792 B] 100s Fetched 4067 kB in 1s (5113 kB/s) 101s Reading package lists... 102s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 103s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Calculating upgrade... 104s The following packages will be upgraded: 104s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 104s python3-referencing sed 105s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 8110 kB of archives. 105s After this operation, 0 B of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 105s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 105s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 105s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 105s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 105s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 105s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 105s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 106s dpkg-preconfigure: unable to re-open stdin: No such file or directory 106s Fetched 8110 kB in 1s (6610 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 106s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 106s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 106s Setting up sed (4.9-2build3) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 106s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 106s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 106s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 106s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 106s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 107s Setting up libc6:arm64 (2.42-2ubuntu5) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 107s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 107s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 107s Setting up libc-bin (2.42-2ubuntu5) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 107s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 107s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 107s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 107s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 107s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 108s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 108s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 108s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 108s Setting up locales (2.42-2ubuntu5) ... 108s Generating locales (this might take a while)... 110s en_US.UTF-8... done 110s Generation complete. 110s Setting up pollinate (4.33-4ubuntu5) ... 121s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 121s Setting up python3-referencing (0.36.2-1ubuntu2) ... 121s Processing triggers for man-db (2.13.1-1) ... 122s Processing triggers for install-info (7.2-5) ... 122s Processing triggers for systemd (259-1ubuntu3) ... 123s autopkgtest [08:54:21]: upgrading testbed (apt dist-upgrade and autopurge) 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Solving dependencies... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [08:54:41]: rebooting testbed after setup commands that affected boot 180s autopkgtest [08:55:18]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 186s autopkgtest [08:55:24]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 196s Get:1 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (dsc) [2094 B] 196s Get:2 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (tar) [71.3 kB] 196s Get:3 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (diff) [16.0 kB] 196s gpgv: Signature made Tue Dec 2 22:01:13 2025 UTC 196s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 196s gpgv: Can't check signature: No public key 196s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5build1.dsc: no acceptable signature found 196s autopkgtest [08:55:34]: testing package transtermhp version 2.09-5build1 197s autopkgtest [08:55:35]: build not needed 197s autopkgtest [08:55:35]: test run-unit-test: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Solving dependencies... 199s The following NEW packages will be installed: 199s transtermhp 199s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 112 kB of archives. 199s After this operation, 424 kB of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 transtermhp arm64 2.09-5build1 [112 kB] 199s Fetched 112 kB in 0s (448 kB/s) 199s Selecting previously unselected package transtermhp. 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 199s Preparing to unpack .../transtermhp_2.09-5build1_arm64.deb ... 199s Unpacking transtermhp (2.09-5build1) ... 199s Setting up transtermhp (2.09-5build1) ... 199s Processing triggers for man-db (2.13.1-1) ... 209s autopkgtest [08:55:47]: test run-unit-test: [----------------------- 210s calibrate.sh 210s expterm.dat 210s infile.fasta 210s make_expterm.py 210s mfold_rna.sh 210s random_fasta.py 210s Test 1 210s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 210s TransTerm Options = 210s TransTermHP v2.08 (built on Dec 2 2025) 210s WARNING: USING VERSION 1.0 CONFIDENCE. 210s (use -p expterm.dat to use v2.0 confidence) 210s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 210s 210s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 210s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 210s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 210s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 210s --start-cut=0 --end-cut=25 210s 210s 210s warning: no examples in genes; can't compute conf. 210s 210s Each terminator entry starts in column 3 and is of the form: 210s term # start - end +/- regionconf hp tail | notes 210s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 210s Genes are interspersed, and start the first column. 210s 210s 210s Wall clock time = 0 seconds. 210s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 223s WARNING: USING VERSION 1.0 CONFIDENCE. 223s (use -p expterm.dat to use v2.0 confidence) 223s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 240s Seq: random (length 20000000, 14756 genes) 240s 240s Wall clock time = 14 seconds. 240s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 249s WARNING: USING VERSION 1.0 CONFIDENCE. 249s (use -p expterm.dat to use v2.0 confidence) 249s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 265s Seq: random (length 20000000, 14722 genes) 265s 266s Wall clock time = 16 seconds. 266s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 279s WARNING: USING VERSION 1.0 CONFIDENCE. 279s (use -p expterm.dat to use v2.0 confidence) 279s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 296s Seq: random (length 20000000, 14830 genes) 296s 297s Wall clock time = 19 seconds. 297s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 310s WARNING: USING VERSION 1.0 CONFIDENCE. 310s (use -p expterm.dat to use v2.0 confidence) 310s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 329s Seq: random (length 20000000, 14825 genes) 329s 330s Wall clock time = 21 seconds. 330s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 345s WARNING: USING VERSION 1.0 CONFIDENCE. 345s (use -p expterm.dat to use v2.0 confidence) 345s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 368s Seq: random (length 20000000, 14745 genes) 368s 368s Wall clock time = 23 seconds. 368s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 379s WARNING: USING VERSION 1.0 CONFIDENCE. 379s (use -p expterm.dat to use v2.0 confidence) 379s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 402s Seq: random (length 20000000, 14831 genes) 402s 402s Wall clock time = 24 seconds. 403s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 415s WARNING: USING VERSION 1.0 CONFIDENCE. 415s (use -p expterm.dat to use v2.0 confidence) 415s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 440s Seq: random (length 20000000, 14807 genes) 440s 441s Wall clock time = 26 seconds. 441s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 454s WARNING: USING VERSION 1.0 CONFIDENCE. 454s (use -p expterm.dat to use v2.0 confidence) 454s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 480s Seq: random (length 20000000, 14887 genes) 480s 481s Wall clock time = 27 seconds. 481s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 494s WARNING: USING VERSION 1.0 CONFIDENCE. 494s (use -p expterm.dat to use v2.0 confidence) 494s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 523s Seq: random (length 20000000, 14847 genes) 523s 523s Wall clock time = 29 seconds. 523s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 536s WARNING: USING VERSION 1.0 CONFIDENCE. 536s (use -p expterm.dat to use v2.0 confidence) 536s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 565s Seq: random (length 20000000, 14750 genes) 565s 566s Wall clock time = 30 seconds. 566s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 579s WARNING: USING VERSION 1.0 CONFIDENCE. 579s (use -p expterm.dat to use v2.0 confidence) 579s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 610s Seq: random (length 20000000, 14772 genes) 610s 610s Wall clock time = 32 seconds. 610s calibrate.sh: Running TransTerm on random sequence with %AT = 0.48 623s WARNING: USING VERSION 1.0 CONFIDENCE. 623s (use -p expterm.dat to use v2.0 confidence) 623s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 656s Seq: random (length 20000000, 14798 genes) 656s 656s Wall clock time = 33 seconds. 656s calibrate.sh: Running TransTerm on random sequence with %AT = 0.50 669s WARNING: USING VERSION 1.0 CONFIDENCE. 669s (use -p expterm.dat to use v2.0 confidence) 669s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 702s Seq: random (length 20000000, 14775 genes) 702s 703s Wall clock time = 34 seconds. 703s calibrate.sh: Running TransTerm on random sequence with %AT = 0.52 716s WARNING: USING VERSION 1.0 CONFIDENCE. 716s (use -p expterm.dat to use v2.0 confidence) 716s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 750s Seq: random (length 20000000, 14836 genes) 750s 751s Wall clock time = 35 seconds. 751s calibrate.sh: Running TransTerm on random sequence with %AT = 0.54 764s WARNING: USING VERSION 1.0 CONFIDENCE. 764s (use -p expterm.dat to use v2.0 confidence) 764s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 799s Seq: random (length 20000000, 14764 genes) 799s 800s Wall clock time = 36 seconds. 800s calibrate.sh: Running TransTerm on random sequence with %AT = 0.56 813s WARNING: USING VERSION 1.0 CONFIDENCE. 813s (use -p expterm.dat to use v2.0 confidence) 813s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 849s Seq: random (length 20000000, 14777 genes) 849s 850s Wall clock time = 37 seconds. 850s calibrate.sh: Running TransTerm on random sequence with %AT = 0.58 863s WARNING: USING VERSION 1.0 CONFIDENCE. 863s (use -p expterm.dat to use v2.0 confidence) 863s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 903s Seq: random (length 20000000, 14776 genes) 903s 903s Wall clock time = 37 seconds. 903s calibrate.sh: Running TransTerm on random sequence with %AT = 0.60 913s WARNING: USING VERSION 1.0 CONFIDENCE. 913s (use -p expterm.dat to use v2.0 confidence) 913s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 951s Seq: random (length 20000000, 14717 genes) 951s 952s Wall clock time = 39 seconds. 952s calibrate.sh: Running TransTerm on random sequence with %AT = 0.62 965s WARNING: USING VERSION 1.0 CONFIDENCE. 965s (use -p expterm.dat to use v2.0 confidence) 965s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1003s Seq: random (length 20000000, 14810 genes) 1003s 1004s Wall clock time = 39 seconds. 1004s calibrate.sh: Running TransTerm on random sequence with %AT = 0.64 1017s WARNING: USING VERSION 1.0 CONFIDENCE. 1017s (use -p expterm.dat to use v2.0 confidence) 1017s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1056s Seq: random (length 20000000, 14707 genes) 1056s 1057s Wall clock time = 40 seconds. 1057s calibrate.sh: Running TransTerm on random sequence with %AT = 0.66 1070s WARNING: USING VERSION 1.0 CONFIDENCE. 1070s (use -p expterm.dat to use v2.0 confidence) 1070s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1110s Seq: random (length 20000000, 14723 genes) 1110s 1110s Wall clock time = 40 seconds. 1110s calibrate.sh: Running TransTerm on random sequence with %AT = 0.68 1123s WARNING: USING VERSION 1.0 CONFIDENCE. 1123s (use -p expterm.dat to use v2.0 confidence) 1123s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1165s Seq: random (length 20000000, 14770 genes) 1165s 1165s Wall clock time = 42 seconds. 1165s calibrate.sh: Running TransTerm on random sequence with %AT = 0.70 1178s WARNING: USING VERSION 1.0 CONFIDENCE. 1178s (use -p expterm.dat to use v2.0 confidence) 1178s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1219s Seq: random (length 20000000, 14717 genes) 1219s 1219s Wall clock time = 43 seconds. 1219s calibrate.sh: Running TransTerm on random sequence with %AT = 0.72 1232s WARNING: USING VERSION 1.0 CONFIDENCE. 1232s (use -p expterm.dat to use v2.0 confidence) 1232s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1274s Seq: random (length 20000000, 14806 genes) 1274s 1275s Wall clock time = 43 seconds. 1275s calibrate.sh: Running TransTerm on random sequence with %AT = 0.74 1288s WARNING: USING VERSION 1.0 CONFIDENCE. 1288s (use -p expterm.dat to use v2.0 confidence) 1288s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1330s Seq: random (length 20000000, 14819 genes) 1330s 1330s Wall clock time = 43 seconds. 1330s calibrate.sh: Running TransTerm on random sequence with %AT = 0.76 1343s WARNING: USING VERSION 1.0 CONFIDENCE. 1343s (use -p expterm.dat to use v2.0 confidence) 1343s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1386s Seq: random (length 20000000, 14816 genes) 1386s 1386s Wall clock time = 43 seconds. 1386s calibrate.sh: Running TransTerm on random sequence with %AT = 0.78 1399s WARNING: USING VERSION 1.0 CONFIDENCE. 1399s (use -p expterm.dat to use v2.0 confidence) 1399s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1442s Seq: random (length 20000000, 14746 genes) 1442s 1443s Wall clock time = 44 seconds. 1443s calibrate.sh: Running TransTerm on random sequence with %AT = 0.80 1455s WARNING: USING VERSION 1.0 CONFIDENCE. 1455s (use -p expterm.dat to use v2.0 confidence) 1455s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1499s Seq: random (length 20000000, 14779 genes) 1499s 1499s Wall clock time = 44 seconds. 1499s calibrate.sh: Running TransTerm on random sequence with %AT = 0.82 1512s WARNING: USING VERSION 1.0 CONFIDENCE. 1512s (use -p expterm.dat to use v2.0 confidence) 1512s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1556s Seq: random (length 20000000, 14813 genes) 1556s 1557s Wall clock time = 45 seconds. 1557s calibrate.sh: Running TransTerm on random sequence with %AT = 0.84 1570s WARNING: USING VERSION 1.0 CONFIDENCE. 1570s (use -p expterm.dat to use v2.0 confidence) 1570s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1614s Seq: random (length 20000000, 14814 genes) 1614s 1614s Wall clock time = 45 seconds. 1614s Creating distribution file in expterm.dat 1616s You must specify a background distribution file with '-p expterm.dat'. 1616s 2ndscore (Dec 2 2025) 1616s 1616s --gc=-2.1 --au=-1.3 --gu=-0.8 --mm=3.5 --gap=3.9 1616s --max-len=59 --max-loop=13 --min-loop=3 1616s --loop-penalty=4.1,4.9,4.4,4.7,5,5.1,5.2,5.3,5.4,5.5,5.6 1616s 1616s 1. Seq: 9258 (length 34) 1616s 2. Seq: 9361 (length 611) 1616s 3. Seq: 9365 (length 796) 1616s 4. Seq: 9371 (length 762) 1616s 5. Seq: 9544 (length 810) 1616s 6. Seq: 9598 (length 797) 1616s 7. Seq: 9606 (length 797) 1616s 8. Seq: 9615 (length 802) 1616s 9. Seq: 9685 (length 687) 1616s 10. Seq: 9785 (length 793) 1616s 11. Seq: 9796 (length 806) 1616s 12. Seq: 9913 (length 798) 1616s 13. Seq: 9986 (length 789) 1616s 14. Seq: 10090 (length 770) 1616s 15. Seq: 10116 (length 832) 1616s 16. Seq: 10141 (length 327) 1616s 17. Seq: 13616 (length 884) 1616s 18. Seq: 28377 (length 87) 1616s 19. Seq: 42254 (length 372) 1616s Done. You can run transterm with this background distribution using '-r expterm.dat' 1616s PASS 1616s Test 2 1616s PASS 1620s autopkgtest [09:19:18]: test run-unit-test: -----------------------] 1638s autopkgtest [09:19:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1638s run-unit-test PASS 1642s autopkgtest [09:19:40]: @@@@@@@@@@@@@@@@@@@@ summary 1642s run-unit-test PASS