0s autopkgtest [23:52:40]: starting date and time: 2025-12-01 23:52:40+0000 0s autopkgtest [23:52:40]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:52:40]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6btld1rz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mathjax --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mathjax/2.7.9+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-resolute-arm64-snakemake-20251201-235239-juju-7f2275-prod-proposed-migration-environment-2-a33bf962-cee6-4695-a2cc-64a7142c3cde --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-snakemake-20251201-235239-juju-7f2275-prod-proposed-migration-environment-2-a33bf962-cee6-4695-a2cc-64a7142c3cde from image adt/ubuntu-resolute-arm64-server-20251130.img (UUID 7bfd96d0-4077-4094-bedd-a93a5933de51)... 70s autopkgtest [23:53:50]: testbed dpkg architecture: arm64 70s autopkgtest [23:53:50]: testbed apt version: 3.1.12 71s autopkgtest [23:53:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 71s autopkgtest [23:53:51]: testbed release detected to be: None 72s autopkgtest [23:53:52]: updating testbed package index (apt update) 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 73s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 73s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [827 kB] 73s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [21.1 kB] 73s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [160 kB] 73s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [110 kB] 73s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4888 B] 73s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 73s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [482 kB] 73s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [13.7 kB] 73s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [7100 B] 73s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [468 B] 74s Fetched 1751 kB in 1s (1466 kB/s) 75s Reading package lists... 76s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 76s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Reading package lists... 78s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Calculating upgrade... 80s The following packages will be upgraded: 80s apport-symptoms chrony command-not-found fonts-ubuntu-console krb5-locales 80s libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libxml2-16 80s linux-firmware python3-commandnotfound rsync 81s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 667 MB of archives. 81s After this operation, 11.4 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 chrony arm64 4.7-1ubuntu3 [337 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 rsync arm64 3.4.1+ds1-7 [434 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 krb5-locales all 1.22.1-2 [14.7 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgssapi-krb5-2 arm64 1.22.1-2 [143 kB] 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libkrb5-3 arm64 1.22.1-2 [357 kB] 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libkrb5support0 arm64 1.22.1-2 [34.5 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libk5crypto3 arm64 1.22.1-2 [82.6 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libxml2-16 arm64 2.15.1+dfsg-2 [605 kB] 81s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 command-not-found all 23.04.0build1 [5148 B] 81s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-commandnotfound all 23.04.0build1 [11.6 kB] 81s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 apport-symptoms all 0.25build1 [13.0 kB] 81s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu2 [18.8 kB] 81s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-firmware all 20251125.gitff6418d1-0ubuntu1 [665 MB] 102s dpkg-preconfigure: unable to re-open stdin: No such file or directory 102s Fetched 667 MB in 21s (31.4 MB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133689 files and directories currently installed.) 103s Preparing to unpack .../00-chrony_4.7-1ubuntu3_arm64.deb ... 103s Unpacking chrony (4.7-1ubuntu3) over (4.7-1ubuntu1) ... 103s Preparing to unpack .../01-rsync_3.4.1+ds1-7_arm64.deb ... 103s Unpacking rsync (3.4.1+ds1-7) over (3.4.1+ds1-6) ... 103s Preparing to unpack .../02-krb5-locales_1.22.1-2_all.deb ... 103s Unpacking krb5-locales (1.22.1-2) over (1.21.3-5ubuntu2) ... 103s Preparing to unpack .../03-libgssapi-krb5-2_1.22.1-2_arm64.deb ... 103s Unpacking libgssapi-krb5-2:arm64 (1.22.1-2) over (1.21.3-5ubuntu2) ... 103s Preparing to unpack .../04-libkrb5-3_1.22.1-2_arm64.deb ... 103s Unpacking libkrb5-3:arm64 (1.22.1-2) over (1.21.3-5ubuntu2) ... 103s Preparing to unpack .../05-libkrb5support0_1.22.1-2_arm64.deb ... 103s Unpacking libkrb5support0:arm64 (1.22.1-2) over (1.21.3-5ubuntu2) ... 103s Preparing to unpack .../06-libk5crypto3_1.22.1-2_arm64.deb ... 103s Unpacking libk5crypto3:arm64 (1.22.1-2) over (1.21.3-5ubuntu2) ... 104s Preparing to unpack .../07-libxml2-16_2.15.1+dfsg-2_arm64.deb ... 104s Unpacking libxml2-16:arm64 (2.15.1+dfsg-2) over (2.15.1+dfsg-1) ... 104s Preparing to unpack .../08-command-not-found_23.04.0build1_all.deb ... 104s Unpacking command-not-found (23.04.0build1) over (23.04.0) ... 104s Preparing to unpack .../09-python3-commandnotfound_23.04.0build1_all.deb ... 104s Unpacking python3-commandnotfound (23.04.0build1) over (23.04.0) ... 104s Preparing to unpack .../10-apport-symptoms_0.25build1_all.deb ... 104s Unpacking apport-symptoms (0.25build1) over (0.25) ... 104s Preparing to unpack .../11-fonts-ubuntu-console_0.869+git20240321-0ubuntu2_all.deb ... 104s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu2) over (0.869+git20240321-0ubuntu1) ... 104s Preparing to unpack .../12-linux-firmware_20251125.gitff6418d1-0ubuntu1_all.deb ... 104s Unpacking linux-firmware (20251125.gitff6418d1-0ubuntu1) over (20251029.git4f72031f-0ubuntu1) ... 107s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu2) ... 107s Setting up linux-firmware (20251125.gitff6418d1-0ubuntu1) ... 107s Setting up libxml2-16:arm64 (2.15.1+dfsg-2) ... 107s Setting up chrony (4.7-1ubuntu3) ... 109s Setting up krb5-locales (1.22.1-2) ... 109s Setting up apport-symptoms (0.25build1) ... 109s Setting up libkrb5support0:arm64 (1.22.1-2) ... 109s Setting up python3-commandnotfound (23.04.0build1) ... 109s Setting up libk5crypto3:arm64 (1.22.1-2) ... 109s Setting up libkrb5-3:arm64 (1.22.1-2) ... 109s Setting up rsync (3.4.1+ds1-7) ... 110s rsync.service is a disabled or a static unit not running, not starting it. 110s Setting up command-not-found (23.04.0build1) ... 110s Setting up libgssapi-krb5-2:arm64 (1.22.1-2) ... 110s Processing triggers for man-db (2.13.1-1) ... 111s Processing triggers for libc-bin (2.42-2ubuntu2) ... 112s Processing triggers for initramfs-tools (0.150ubuntu5) ... 112s update-initramfs: Generating /boot/initrd.img-6.17.0-6-generic 130s System running in EFI mode, skipping. 130s autopkgtest [23:54:50]: upgrading testbed (apt dist-upgrade and autopurge) 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Calculating upgrade... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Solving dependencies... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [23:54:52]: rebooting testbed after setup commands that affected boot 160s autopkgtest [23:55:20]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 14:22:06 UTC 2025 163s autopkgtest [23:55:23]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 166s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (dsc) [3526 B] 166s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (tar) [8886 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (diff) [29.8 kB] 166s gpgv: Signature made Sun Feb 9 22:32:14 2025 UTC 166s gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 166s gpgv: issuer "rebecca_palmer@zoho.com" 166s gpgv: Can't check signature: No public key 166s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-7.dsc: no acceptable signature found 166s autopkgtest [23:55:26]: testing package snakemake version 7.32.4-7 167s autopkgtest [23:55:27]: build not needed 168s autopkgtest [23:55:28]: test command1: preparing testbed 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s Solving dependencies... 169s The following NEW packages will be installed: 169s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 169s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 169s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 169s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 169s python3-connection-pool python3-datrie python3-decorator python3-docutils 169s python3-dpath python3-fastjsonschema python3-git python3-gitdb 169s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 169s python3-platformdirs python3-psutil python3-pulp python3-ratelimiter 169s python3-retry python3-roman python3-smart-open python3-smmap python3-stopit 169s python3-tabulate python3-throttler python3-toposort python3-traitlets 169s python3-wrapt python3-yte sgml-base snakemake xml-core 169s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 14.0 MB of archives. 169s After this operation, 57.6 MB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 170s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-9ubuntu1 [450 kB] 170s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 170s Get:4 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-libcoinutils3v5 arm64 2.11.12+ds-1 [450 kB] 170s Get:5 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-libosi1v5 arm64 0.108.11+ds-1 [258 kB] 170s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-libclp1 arm64 1.17.10+ds-1 [849 kB] 170s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-libcgl1 arm64 0.60.9+ds-1 [396 kB] 170s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-libcbc3.1 arm64 2.10.12+ds-1 [726 kB] 170s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 170s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB] 170s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 170s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 170s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 liberror-perl all 0.17030-1 [23.5 kB] 170s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 git-man all 1:2.51.0-1ubuntu1 [1179 kB] 170s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 git arm64 1:2.51.0-1ubuntu1 [4431 kB] 171s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 171s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 171s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 171s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-configargparse all 1.7-2 [31.7 kB] 171s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-connection-pool all 0.0.3-2build1 [5792 B] 171s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-datrie arm64 0.8.3-2 [184 kB] 171s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 171s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-roman all 5.1-1 [10.6 kB] 171s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 171s Get:25 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-dpath all 2.2.0-1 [20.1 kB] 171s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 171s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-smmap all 6.0.0-1 [20.5 kB] 171s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-gitdb all 4.0.12-1 [46.4 kB] 171s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-git all 3.1.45-1 [149 kB] 171s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 171s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.4.0-1 [16.9 kB] 171s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 171s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 171s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 171s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plac all 1.4.3-2 [63.2 kB] 171s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-psutil arm64 7.1.0-1ubuntu1 [191 kB] 171s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 coinor-cbc arm64 2.10.12+ds-1 [14.3 kB] 171s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 171s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ratelimiter arm64 1.2.0.post0-5 [5782 B] 171s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-retry all 0.9.2-4 [6094 B] 171s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-wrapt arm64 1.17.3-2 [39.9 kB] 171s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-smart-open all 7.1.0-1 [89.9 kB] 171s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-stopit all 1.1.2-3 [12.8 kB] 171s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 171s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-throttler all 1.2.2-2 [7138 B] 171s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-toposort all 1.10-2 [6348 B] 171s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-yte all 1.5.4-1 [12.0 kB] 171s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 snakemake all 7.32.4-7 [274 kB] 171s Fetched 14.0 MB in 2s (7871 kB/s) 171s Selecting previously unselected package libblas3:arm64. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 172s Preparing to unpack .../00-libblas3_3.12.1-7_arm64.deb ... 172s Unpacking libblas3:arm64 (3.12.1-7) ... 172s Selecting previously unselected package libgfortran5:arm64. 172s Preparing to unpack .../01-libgfortran5_15.2.0-9ubuntu1_arm64.deb ... 172s Unpacking libgfortran5:arm64 (15.2.0-9ubuntu1) ... 172s Selecting previously unselected package liblapack3:arm64. 172s Preparing to unpack .../02-liblapack3_3.12.1-7_arm64.deb ... 172s Unpacking liblapack3:arm64 (3.12.1-7) ... 172s Selecting previously unselected package coinor-libcoinutils3v5:arm64. 172s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_arm64.deb ... 172s Unpacking coinor-libcoinutils3v5:arm64 (2.11.12+ds-1) ... 172s Selecting previously unselected package coinor-libosi1v5:arm64. 172s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_arm64.deb ... 172s Unpacking coinor-libosi1v5:arm64 (0.108.11+ds-1) ... 172s Selecting previously unselected package coinor-libclp1:arm64. 172s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1_arm64.deb ... 172s Unpacking coinor-libclp1:arm64 (1.17.10+ds-1) ... 172s Selecting previously unselected package coinor-libcgl1:arm64. 172s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1_arm64.deb ... 172s Unpacking coinor-libcgl1:arm64 (0.60.9+ds-1) ... 172s Selecting previously unselected package coinor-libcbc3.1:arm64. 172s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1_arm64.deb ... 172s Unpacking coinor-libcbc3.1:arm64 (2.10.12+ds-1) ... 172s Selecting previously unselected package sgml-base. 172s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 172s Unpacking sgml-base (1.31+nmu1) ... 172s Selecting previously unselected package xml-core. 172s Preparing to unpack .../09-xml-core_0.19_all.deb ... 172s Unpacking xml-core (0.19) ... 172s Selecting previously unselected package docutils-common. 172s Preparing to unpack .../10-docutils-common_0.21.2+dfsg-2_all.deb ... 172s Unpacking docutils-common (0.21.2+dfsg-2) ... 172s Selecting previously unselected package fonts-glyphicons-halflings. 172s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 172s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 172s Selecting previously unselected package liberror-perl. 172s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 172s Unpacking liberror-perl (0.17030-1) ... 172s Selecting previously unselected package git-man. 172s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 172s Unpacking git-man (1:2.51.0-1ubuntu1) ... 172s Selecting previously unselected package git. 172s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_arm64.deb ... 172s Unpacking git (1:2.51.0-1ubuntu1) ... 173s Selecting previously unselected package libdatrie1:arm64. 173s Preparing to unpack .../15-libdatrie1_0.2.14-1_arm64.deb ... 173s Unpacking libdatrie1:arm64 (0.2.14-1) ... 173s Selecting previously unselected package libjs-bootstrap. 173s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 173s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 173s Selecting previously unselected package libjs-jquery. 173s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 173s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 173s Selecting previously unselected package python3-configargparse. 173s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 173s Unpacking python3-configargparse (1.7-2) ... 173s Selecting previously unselected package python3-connection-pool. 173s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 173s Unpacking python3-connection-pool (0.0.3-2build1) ... 173s Selecting previously unselected package python3-datrie. 173s Preparing to unpack .../20-python3-datrie_0.8.3-2_arm64.deb ... 173s Unpacking python3-datrie (0.8.3-2) ... 173s Selecting previously unselected package python3-decorator. 173s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 173s Unpacking python3-decorator (5.2.1-2) ... 173s Selecting previously unselected package python3-roman. 173s Preparing to unpack .../22-python3-roman_5.1-1_all.deb ... 173s Unpacking python3-roman (5.1-1) ... 173s Selecting previously unselected package python3-docutils. 173s Preparing to unpack .../23-python3-docutils_0.21.2+dfsg-2_all.deb ... 173s Unpacking python3-docutils (0.21.2+dfsg-2) ... 173s Selecting previously unselected package python3-dpath. 173s Preparing to unpack .../24-python3-dpath_2.2.0-1_all.deb ... 173s Unpacking python3-dpath (2.2.0-1) ... 173s Selecting previously unselected package python3-fastjsonschema. 173s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 173s Unpacking python3-fastjsonschema (2.21.1-1) ... 173s Selecting previously unselected package python3-smmap. 173s Preparing to unpack .../26-python3-smmap_6.0.0-1_all.deb ... 173s Unpacking python3-smmap (6.0.0-1) ... 173s Selecting previously unselected package python3-gitdb. 173s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 173s Unpacking python3-gitdb (4.0.12-1) ... 173s Selecting previously unselected package python3-git. 173s Preparing to unpack .../28-python3-git_3.1.45-1_all.deb ... 173s Unpacking python3-git (3.1.45-1) ... 173s Selecting previously unselected package python3-humanfriendly. 173s Preparing to unpack .../29-python3-humanfriendly_10.0-6_all.deb ... 173s Unpacking python3-humanfriendly (10.0-6) ... 173s Selecting previously unselected package python3-platformdirs. 173s Preparing to unpack .../30-python3-platformdirs_4.4.0-1_all.deb ... 173s Unpacking python3-platformdirs (4.4.0-1) ... 173s Selecting previously unselected package python3-traitlets. 173s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 173s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 173s Selecting previously unselected package python3-jupyter-core. 173s Preparing to unpack .../32-python3-jupyter-core_5.7.2-5_all.deb ... 173s Unpacking python3-jupyter-core (5.7.2-5) ... 173s Selecting previously unselected package python3-nbformat. 173s Preparing to unpack .../33-python3-nbformat_5.9.1-1_all.deb ... 173s Unpacking python3-nbformat (5.9.1-1) ... 173s Selecting previously unselected package python3-plac. 173s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 173s Unpacking python3-plac (1.4.3-2) ... 173s Selecting previously unselected package python3-psutil. 173s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_arm64.deb ... 173s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 174s Selecting previously unselected package coinor-cbc. 174s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1_arm64.deb ... 174s Unpacking coinor-cbc (2.10.12+ds-1) ... 174s Selecting previously unselected package python3-pulp. 174s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 174s Unpacking python3-pulp (2.7.0+dfsg-4) ... 174s Selecting previously unselected package python3-ratelimiter. 174s Preparing to unpack .../38-python3-ratelimiter_1.2.0.post0-5_arm64.deb ... 174s Unpacking python3-ratelimiter (1.2.0.post0-5) ... 174s Selecting previously unselected package python3-retry. 174s Preparing to unpack .../39-python3-retry_0.9.2-4_all.deb ... 174s Unpacking python3-retry (0.9.2-4) ... 174s Selecting previously unselected package python3-wrapt. 174s Preparing to unpack .../40-python3-wrapt_1.17.3-2_arm64.deb ... 174s Unpacking python3-wrapt (1.17.3-2) ... 174s Selecting previously unselected package python3-smart-open. 174s Preparing to unpack .../41-python3-smart-open_7.1.0-1_all.deb ... 174s Unpacking python3-smart-open (7.1.0-1) ... 174s Selecting previously unselected package python3-stopit. 174s Preparing to unpack .../42-python3-stopit_1.1.2-3_all.deb ... 174s Unpacking python3-stopit (1.1.2-3) ... 174s Selecting previously unselected package python3-tabulate. 174s Preparing to unpack .../43-python3-tabulate_0.9.0-1_all.deb ... 174s Unpacking python3-tabulate (0.9.0-1) ... 174s Selecting previously unselected package python3-throttler. 174s Preparing to unpack .../44-python3-throttler_1.2.2-2_all.deb ... 174s Unpacking python3-throttler (1.2.2-2) ... 174s Selecting previously unselected package python3-toposort. 174s Preparing to unpack .../45-python3-toposort_1.10-2_all.deb ... 174s Unpacking python3-toposort (1.10-2) ... 174s Selecting previously unselected package python3-yte. 174s Preparing to unpack .../46-python3-yte_1.5.4-1_all.deb ... 174s Unpacking python3-yte (1.5.4-1) ... 174s Selecting previously unselected package snakemake. 174s Preparing to unpack .../47-snakemake_7.32.4-7_all.deb ... 174s Unpacking snakemake (7.32.4-7) ... 174s Setting up python3-toposort (1.10-2) ... 174s Setting up python3-configargparse (1.7-2) ... 174s Setting up libdatrie1:arm64 (0.2.14-1) ... 174s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 174s Setting up python3-tabulate (0.9.0-1) ... 174s Setting up python3-plac (1.4.3-2) ... 175s Setting up python3-platformdirs (4.4.0-1) ... 175s Setting up python3-psutil (7.1.0-1ubuntu1) ... 175s Setting up python3-ratelimiter (1.2.0.post0-5) ... 175s Setting up liberror-perl (0.17030-1) ... 175s Setting up python3-roman (5.1-1) ... 175s Setting up python3-decorator (5.2.1-2) ... 175s Setting up libblas3:arm64 (3.12.1-7) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 175s Setting up python3-humanfriendly (10.0-6) ... 175s Setting up python3-dpath (2.2.0-1) ... 176s Setting up python3-connection-pool (0.0.3-2build1) ... 176s Setting up python3-wrapt (1.17.3-2) ... 176s Setting up python3-throttler (1.2.2-2) ... 176s Setting up python3-retry (0.9.2-4) ... 176s Setting up libgfortran5:arm64 (15.2.0-9ubuntu1) ... 176s Setting up python3-fastjsonschema (2.21.1-1) ... 176s Setting up python3-stopit (1.1.2-3) ... 176s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 176s Setting up git-man (1:2.51.0-1ubuntu1) ... 176s Setting up sgml-base (1.31+nmu1) ... 176s Setting up python3-datrie (0.8.3-2) ... 176s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 176s Setting up python3-smmap (6.0.0-1) ... 177s Setting up python3-jupyter-core (5.7.2-5) ... 177s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 177s Setting up liblapack3:arm64 (3.12.1-7) ... 177s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 177s Setting up python3-smart-open (7.1.0-1) ... 177s Setting up python3-nbformat (5.9.1-1) ... 177s Setting up python3-gitdb (4.0.12-1) ... 177s Setting up python3-yte (1.5.4-1) ... 177s Setting up coinor-libcoinutils3v5:arm64 (2.11.12+ds-1) ... 177s Setting up git (1:2.51.0-1ubuntu1) ... 177s Setting up coinor-libosi1v5:arm64 (0.108.11+ds-1) ... 177s Setting up xml-core (0.19) ... 177s Setting up coinor-libclp1:arm64 (1.17.10+ds-1) ... 177s Setting up python3-git (3.1.45-1) ... 178s Setting up coinor-libcgl1:arm64 (0.60.9+ds-1) ... 178s Setting up coinor-libcbc3.1:arm64 (2.10.12+ds-1) ... 178s Setting up coinor-cbc (2.10.12+ds-1) ... 178s Setting up python3-pulp (2.7.0+dfsg-4) ... 178s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 178s otherwise be interpreted by the Tcl shell: \ $ " [ 178s Processing triggers for man-db (2.13.1-1) ... 179s Processing triggers for libc-bin (2.42-2ubuntu2) ... 179s Processing triggers for sgml-base (1.31+nmu1) ... 179s Setting up docutils-common (0.21.2+dfsg-2) ... 179s Processing triggers for sgml-base (1.31+nmu1) ... 179s Setting up python3-docutils (0.21.2+dfsg-2) ... 180s Setting up snakemake (7.32.4-7) ... 181s autopkgtest [23:55:41]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 181s autopkgtest [23:55:41]: test command1: [----------------------- 182s Building DAG of jobs... 182s Using shell: /usr/bin/bash 182s Provided cores: 1 (use --cores to define parallelism) 182s Rules claiming more threads will be scaled down. 182s Job stats: 182s job count 182s ----- ------- 182s a 1 182s total 1 182s 182s Select jobs to execute... 182s 182s [Mon Dec 1 23:55:42 2025] 182s rule a: 182s output: test.out 182s jobid: 0 182s reason: Missing output files: test.out 182s resources: tmpdir=/tmp 182s 182s [Mon Dec 1 23:55:42 2025] 182s Finished job 0. 182s 1 of 1 steps (100%) done 182s Complete log: .snakemake/log/2025-12-01T235542.113788.snakemake.log 182s bash 183s autopkgtest [23:55:43]: test command1: -----------------------] 183s autopkgtest [23:55:43]: test command1: - - - - - - - - - - results - - - - - - - - - - 183s command1 PASS 183s autopkgtest [23:55:43]: test run-unit-test: preparing testbed 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 184s Solving dependencies... 185s The following NEW packages will be installed: 185s environment-modules fontconfig fontconfig-config fonts-dejavu-core 185s fonts-dejavu-mono glpk-utils graphviz libamd3 libann0 libaom3 libcairo2 185s libcdt5 libcgraph6 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libgd3 185s libglpk40 libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 185s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 185s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblab-gamut1 liblerc4 185s libltdl7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 185s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 185s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 185s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxmu6 libxpm4 185s libxrender1 libxss1 libxt6t64 python3-ftputil python3-iniconfig 185s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 185s python3-pluggy python3-pytest python3-pytest-mock python3-pytz 185s python3-requests-mock r-base-core stress tcl8.6 unzip x11-common xdg-utils 185s zip 185s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 57.8 MB of archives. 185s After this operation, 179 MB of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 185s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 186s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 186s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 tcl8.6 arm64 8.6.17+dfsg-1 [14.9 kB] 186s Get:5 http://ftpmaster.internal/ubuntu resolute/universe arm64 environment-modules arm64 5.6.0-1 [363 kB] 186s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 186s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 186s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 186s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 186s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB] 186s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-9ubuntu1 [147 kB] 186s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libsuitesparseconfig7 arm64 1:7.11.0+dfsg-2 [21.7 kB] 186s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd3 arm64 1:7.11.0+dfsg-2 [34.5 kB] 186s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolamd3 arm64 1:7.11.0+dfsg-2 [27.0 kB] 186s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-7 [42.8 kB] 186s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglpk40 arm64 5.0-2 [347 kB] 186s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 glpk-utils arm64 5.0-2 [226 kB] 186s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 186s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcdt5 arm64 2.42.4-3build2 [21.9 kB] 186s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcgraph6 arm64 2.42.4-3build2 [48.6 kB] 186s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 186s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.13.1-2 [1773 kB] 186s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.20.2-2build1 [12.0 kB] 186s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1 [146 kB] 186s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.20.2-2build1 [9296 B] 186s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.20.2-2build1 [456 kB] 186s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 186s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 186s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 186s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 186s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 186s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 186s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 186s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 186s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 186s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libgd3 arm64 2.3.3-13ubuntu1 [124 kB] 186s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 186s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 186s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 186s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 186s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 186s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 186s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 186s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 186s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 186s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 186s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-2 [237 kB] 186s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [50.2 kB] 186s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [27.7 kB] 186s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpathplan4 arm64 2.42.4-3build2 [24.3 kB] 186s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvc6 arm64 2.42.4-3build2 [730 kB] 186s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvpr2 arm64 2.42.4-3build2 [192 kB] 186s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblab-gamut1 arm64 2.42.4-3build2 [1786 kB] 186s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 186s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 186s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 186s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 186s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-3build3 [50.5 kB] 186s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 186s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 graphviz arm64 2.42.4-3build2 [639 kB] 186s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 186s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 186s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 186s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 186s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 186s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ftputil all 5.1.0-1 [41.1 kB] 186s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 186s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-4 [32.3 kB] 186s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-1ubuntu1 [6979 kB] 187s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 187s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 187s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 187s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-mock all 3.15.1-1 [11.9 kB] 187s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-requests-mock all 1.12.1-3 [17.8 kB] 187s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 187s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-28ubuntu7 [176 kB] 187s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 187s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1 [28.6 MB] 187s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 stress arm64 1.0.7-1 [17.5 kB] 188s Preconfiguring packages ... 188s Fetched 57.8 MB in 3s (20.2 MB/s) 188s Selecting previously unselected package python3-numpy-dev:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136447 files and directories currently installed.) 188s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 188s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 188s Selecting previously unselected package python3-numpy. 188s Preparing to unpack .../01-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 188s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 188s Selecting previously unselected package libtcl8.6:arm64. 188s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 188s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 188s Selecting previously unselected package tcl8.6. 188s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_arm64.deb ... 188s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 188s Selecting previously unselected package environment-modules. 188s Preparing to unpack .../04-environment-modules_5.6.0-1_arm64.deb ... 188s Unpacking environment-modules (5.6.0-1) ... 188s Selecting previously unselected package fonts-dejavu-mono. 188s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 188s Unpacking fonts-dejavu-mono (2.37-8) ... 188s Selecting previously unselected package fonts-dejavu-core. 188s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 188s Unpacking fonts-dejavu-core (2.37-8) ... 189s Selecting previously unselected package fontconfig-config. 189s Preparing to unpack .../07-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 189s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 189s Selecting previously unselected package libfontconfig1:arm64. 189s Preparing to unpack .../08-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 189s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 189s Selecting previously unselected package fontconfig. 189s Preparing to unpack .../09-fontconfig_2.15.0-2.3ubuntu1_arm64.deb ... 189s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 189s Selecting previously unselected package libgomp1:arm64. 189s Preparing to unpack .../10-libgomp1_15.2.0-9ubuntu1_arm64.deb ... 189s Unpacking libgomp1:arm64 (15.2.0-9ubuntu1) ... 189s Selecting previously unselected package libsuitesparseconfig7:arm64. 189s Preparing to unpack .../11-libsuitesparseconfig7_1%3a7.11.0+dfsg-2_arm64.deb ... 189s Unpacking libsuitesparseconfig7:arm64 (1:7.11.0+dfsg-2) ... 189s Selecting previously unselected package libamd3:arm64. 189s Preparing to unpack .../12-libamd3_1%3a7.11.0+dfsg-2_arm64.deb ... 189s Unpacking libamd3:arm64 (1:7.11.0+dfsg-2) ... 189s Selecting previously unselected package libcolamd3:arm64. 189s Preparing to unpack .../13-libcolamd3_1%3a7.11.0+dfsg-2_arm64.deb ... 189s Unpacking libcolamd3:arm64 (1:7.11.0+dfsg-2) ... 189s Selecting previously unselected package libltdl7:arm64. 189s Preparing to unpack .../14-libltdl7_2.5.4-7_arm64.deb ... 189s Unpacking libltdl7:arm64 (2.5.4-7) ... 189s Selecting previously unselected package libglpk40:arm64. 189s Preparing to unpack .../15-libglpk40_5.0-2_arm64.deb ... 189s Unpacking libglpk40:arm64 (5.0-2) ... 189s Selecting previously unselected package glpk-utils. 189s Preparing to unpack .../16-glpk-utils_5.0-2_arm64.deb ... 189s Unpacking glpk-utils (5.0-2) ... 189s Selecting previously unselected package libann0. 189s Preparing to unpack .../17-libann0_1.1.2+doc-9build1_arm64.deb ... 189s Unpacking libann0 (1.1.2+doc-9build1) ... 189s Selecting previously unselected package libcdt5:arm64. 189s Preparing to unpack .../18-libcdt5_2.42.4-3build2_arm64.deb ... 189s Unpacking libcdt5:arm64 (2.42.4-3build2) ... 189s Selecting previously unselected package libcgraph6:arm64. 189s Preparing to unpack .../19-libcgraph6_2.42.4-3build2_arm64.deb ... 189s Unpacking libcgraph6:arm64 (2.42.4-3build2) ... 189s Selecting previously unselected package libsharpyuv0:arm64. 189s Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_arm64.deb ... 189s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 189s Selecting previously unselected package libaom3:arm64. 189s Preparing to unpack .../21-libaom3_3.13.1-2_arm64.deb ... 189s Unpacking libaom3:arm64 (3.13.1-2) ... 189s Selecting previously unselected package libheif-plugin-aomdec:arm64. 190s Preparing to unpack .../22-libheif-plugin-aomdec_1.20.2-2build1_arm64.deb ... 190s Unpacking libheif-plugin-aomdec:arm64 (1.20.2-2build1) ... 190s Selecting previously unselected package libde265-0:arm64. 190s Preparing to unpack .../23-libde265-0_1.0.16-1_arm64.deb ... 190s Unpacking libde265-0:arm64 (1.0.16-1) ... 190s Selecting previously unselected package libheif-plugin-libde265:arm64. 190s Preparing to unpack .../24-libheif-plugin-libde265_1.20.2-2build1_arm64.deb ... 190s Unpacking libheif-plugin-libde265:arm64 (1.20.2-2build1) ... 190s Selecting previously unselected package libheif1:arm64. 190s Preparing to unpack .../25-libheif1_1.20.2-2build1_arm64.deb ... 190s Unpacking libheif1:arm64 (1.20.2-2build1) ... 190s Selecting previously unselected package libimagequant0:arm64. 190s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_arm64.deb ... 190s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 190s Selecting previously unselected package libjpeg-turbo8:arm64. 190s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 190s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 190s Selecting previously unselected package libjpeg8:arm64. 190s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_arm64.deb ... 190s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 190s Selecting previously unselected package libdeflate0:arm64. 190s Preparing to unpack .../29-libdeflate0_1.23-2_arm64.deb ... 190s Unpacking libdeflate0:arm64 (1.23-2) ... 190s Selecting previously unselected package libjbig0:arm64. 190s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 190s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 190s Selecting previously unselected package liblerc4:arm64. 190s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 190s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 190s Selecting previously unselected package libwebp7:arm64. 190s Preparing to unpack .../32-libwebp7_1.5.0-0.1_arm64.deb ... 190s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 190s Selecting previously unselected package libtiff6:arm64. 190s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 190s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 190s Selecting previously unselected package libxpm4:arm64. 190s Preparing to unpack .../34-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 190s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 190s Selecting previously unselected package libgd3:arm64. 190s Preparing to unpack .../35-libgd3_2.3.3-13ubuntu1_arm64.deb ... 190s Unpacking libgd3:arm64 (2.3.3-13ubuntu1) ... 190s Selecting previously unselected package libgts-0.7-5t64:arm64. 190s Preparing to unpack .../36-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 190s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 190s Selecting previously unselected package libpixman-1-0:arm64. 190s Preparing to unpack .../37-libpixman-1-0_0.46.4-1_arm64.deb ... 190s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 190s Selecting previously unselected package libxcb-render0:arm64. 190s Preparing to unpack .../38-libxcb-render0_1.17.0-2build1_arm64.deb ... 190s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 190s Selecting previously unselected package libxcb-shm0:arm64. 190s Preparing to unpack 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Unpacking libthai-data (0.1.29-2build1) ... 191s Selecting previously unselected package libthai0:arm64. 191s Preparing to unpack .../45-libthai0_0.1.29-2build1_arm64.deb ... 191s Unpacking libthai0:arm64 (0.1.29-2build1) ... 191s Selecting previously unselected package libpango-1.0-0:arm64. 191s Preparing to unpack .../46-libpango-1.0-0_1.56.3-2_arm64.deb ... 191s Unpacking libpango-1.0-0:arm64 (1.56.3-2) ... 191s Selecting previously unselected package libpangoft2-1.0-0:arm64. 191s Preparing to unpack .../47-libpangoft2-1.0-0_1.56.3-2_arm64.deb ... 191s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-2) ... 191s Selecting previously unselected package libpangocairo-1.0-0:arm64. 191s Preparing to unpack .../48-libpangocairo-1.0-0_1.56.3-2_arm64.deb ... 191s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-2) ... 191s Selecting previously unselected package libpathplan4:arm64. 191s Preparing to unpack .../49-libpathplan4_2.42.4-3build2_arm64.deb ... 191s Unpacking libpathplan4:arm64 (2.42.4-3build2) ... 191s Selecting previously unselected package libgvc6. 191s Preparing to unpack .../50-libgvc6_2.42.4-3build2_arm64.deb ... 191s Unpacking libgvc6 (2.42.4-3build2) ... 191s Selecting previously unselected package libgvpr2:arm64. 191s Preparing to unpack .../51-libgvpr2_2.42.4-3build2_arm64.deb ... 191s Unpacking libgvpr2:arm64 (2.42.4-3build2) ... 191s Selecting previously unselected package liblab-gamut1:arm64. 191s Preparing to unpack .../52-liblab-gamut1_2.42.4-3build2_arm64.deb ... 191s Unpacking liblab-gamut1:arm64 (2.42.4-3build2) ... 191s Selecting previously unselected package x11-common. 191s Preparing to unpack .../53-x11-common_1%3a7.7+24ubuntu1_all.deb ... 191s Unpacking x11-common (1:7.7+24ubuntu1) ... 191s Selecting previously unselected package libice6:arm64. 191s Preparing to unpack .../54-libice6_2%3a1.1.1-1_arm64.deb ... 191s Unpacking libice6:arm64 (2:1.1.1-1) ... 191s Selecting previously unselected package libsm6:arm64. 191s Preparing to unpack .../55-libsm6_2%3a1.2.6-1_arm64.deb ... 191s Unpacking libsm6:arm64 (2:1.2.6-1) ... 191s Selecting previously unselected package libxt6t64:arm64. 191s Preparing to unpack .../56-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 191s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 191s Selecting previously unselected package libxmu6:arm64. 191s Preparing to unpack .../57-libxmu6_2%3a1.1.3-3build3_arm64.deb ... 191s Unpacking libxmu6:arm64 (2:1.1.3-3build3) ... 191s Selecting previously unselected package libxaw7:arm64. 191s Preparing to unpack .../58-libxaw7_2%3a1.0.16-1_arm64.deb ... 191s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 191s Selecting previously unselected package graphviz. 191s Preparing to unpack .../59-graphviz_2.42.4-3build2_arm64.deb ... 191s Unpacking graphviz (2.42.4-3build2) ... 191s Selecting previously unselected package libpaper2:arm64. 191s Preparing to unpack .../60-libpaper2_2.2.5-0.3_arm64.deb ... 191s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 191s Selecting previously unselected package libpaper-utils. 191s Preparing to unpack .../61-libpaper-utils_2.2.5-0.3_arm64.deb ... 191s Unpacking libpaper-utils (2.2.5-0.3) ... 191s Selecting previously unselected package libxft2:arm64. 191s Preparing to unpack .../62-libxft2_2.3.6-1build1_arm64.deb ... 191s Unpacking libxft2:arm64 (2.3.6-1build1) ... 191s Selecting previously unselected package libxss1:arm64. 191s Preparing to unpack .../63-libxss1_1%3a1.2.3-1build3_arm64.deb ... 191s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 191s Selecting previously unselected package libtk8.6:arm64. 191s Preparing to unpack .../64-libtk8.6_8.6.17-1_arm64.deb ... 191s Unpacking libtk8.6:arm64 (8.6.17-1) ... 192s Selecting previously unselected package python3-ftputil. 192s Preparing to unpack .../65-python3-ftputil_5.1.0-1_all.deb ... 192s Unpacking python3-ftputil (5.1.0-1) ... 192s Selecting previously unselected package python3-iniconfig. 192s Preparing to unpack .../66-python3-iniconfig_2.1.0-1_all.deb ... 192s 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unselected package python3-pytest-mock. 192s Preparing to unpack .../72-python3-pytest-mock_3.15.1-1_all.deb ... 192s Unpacking python3-pytest-mock (3.15.1-1) ... 192s Selecting previously unselected package python3-requests-mock. 192s Preparing to unpack .../73-python3-requests-mock_1.12.1-3_all.deb ... 192s Unpacking python3-requests-mock (1.12.1-3) ... 192s Selecting previously unselected package zip. 192s Preparing to unpack .../74-zip_3.0-15ubuntu2_arm64.deb ... 192s Unpacking zip (3.0-15ubuntu2) ... 192s Selecting previously unselected package unzip. 192s Preparing to unpack .../75-unzip_6.0-28ubuntu7_arm64.deb ... 192s Unpacking unzip (6.0-28ubuntu7) ... 192s Selecting previously unselected package xdg-utils. 192s Preparing to unpack .../76-xdg-utils_1.2.1-2ubuntu1_all.deb ... 192s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 192s Selecting previously unselected package r-base-core. 193s Preparing to unpack .../77-r-base-core_4.5.2-1_arm64.deb ... 193s Unpacking r-base-core (4.5.2-1) ... 193s Selecting previously unselected package stress. 193s Preparing to unpack .../78-stress_1.0.7-1_arm64.deb ... 193s Unpacking stress (1.0.7-1) ... 193s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 193s Setting up python3-iniconfig (2.1.0-1) ... 193s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 193s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 193s Setting up libaom3:arm64 (3.13.1-2) ... 193s Setting up python3-ftputil (5.1.0-1) ... 193s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 193s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 193s Setting up libxrender1:arm64 (1:0.9.12-1) ... 193s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 193s Setting up stress (1.0.7-1) ... 193s Setting up unzip (6.0-28ubuntu7) ... 193s Setting up liblab-gamut1:arm64 (2.42.4-3build2) ... 193s Setting up x11-common (1:7.7+24ubuntu1) ... 194s Setting up libdeflate0:arm64 (1.23-2) ... 194s Setting up python3-pytz (2025.2-4) ... 194s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 194s Setting up libgomp1:arm64 (15.2.0-9ubuntu1) ... 194s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 194s Setting up zip (3.0-15ubuntu2) ... 194s Setting up libpathplan4:arm64 (2.42.4-3build2) ... 194s Setting up libann0 (1.1.2+doc-9build1) ... 194s Setting up python3-requests-mock (1.12.1-3) ... 194s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 194s Setting up fonts-dejavu-mono (2.37-8) ... 194s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 194s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 194s Setting up fonts-dejavu-core (2.37-8) ... 194s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 194s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 196s Setting up libltdl7:arm64 (2.5.4-7) ... 196s Setting up python3-pluggy (1.6.0-1) ... 196s Setting up libwebp7:arm64 (1.5.0-0.1) ... 196s Setting up libsuitesparseconfig7:arm64 (1:7.11.0+dfsg-2) ... 196s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 196s Setting up libthai-data (0.1.29-2build1) ... 196s Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 196s Setting up libcdt5:arm64 (2.42.4-3build2) ... 196s Setting up libcgraph6:arm64 (2.42.4-3build2) ... 196s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 196s Setting up libpaper2:arm64 (2.2.5-0.3) ... 196s Setting up libde265-0:arm64 (1.0.16-1) ... 196s Setting up xdg-utils (1.2.1-2ubuntu1) ... 196s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 196s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 196s Setting up libice6:arm64 (2:1.1.1-1) ... 196s Setting up tcl8.6 (8.6.17+dfsg-1) ... 196s Setting up libamd3:arm64 (1:7.11.0+dfsg-2) ... 196s Setting up libcolamd3:arm64 (1:7.11.0+dfsg-2) ... 196s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 196s Setting up python3-pytest (8.3.5-2) ... 197s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 197s Setting up libpaper-utils (2.2.5-0.3) ... 197s Setting up libthai0:arm64 (0.1.29-2build1) ... 197s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 202s Setting up libglpk40:arm64 (5.0-2) ... 202s Setting up glpk-utils (5.0-2) ... 202s Setting up libgvpr2:arm64 (2.42.4-3build2) ... 202s Setting up python3-pytest-mock (3.15.1-1) ... 202s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 202s Setting up environment-modules (5.6.0-1) ... 202s Setting up libsm6:arm64 (2:1.2.6-1) ... 202s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 202s Setting up libxmu6:arm64 (2:1.1.3-3build3) ... 202s Setting up libxaw7:arm64 (2:1.0.16-1) ... 202s Setting up libheif-plugin-aomdec:arm64 (1.20.2-2build1) ... 202s Setting up libheif-plugin-libde265:arm64 (1.20.2-2build1) ... 202s Setting up libheif1:arm64 (1.20.2-2build1) ... 202s Processing triggers for man-db (2.13.1-1) ... 203s Processing triggers for sgml-base (1.31+nmu1) ... 203s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 203s Processing triggers for install-info (7.2-5) ... 203s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 205s Regenerating fonts cache... done. 205s Setting up libxft2:arm64 (2.3.6-1build1) ... 205s Setting up libtk8.6:arm64 (8.6.17-1) ... 205s Processing triggers for libc-bin (2.42-2ubuntu2) ... 205s Setting up libpango-1.0-0:arm64 (1.56.3-2) ... 205s Setting up libcairo2:arm64 (1.18.4-1build1) ... 205s Setting up libgd3:arm64 (2.3.3-13ubuntu1) ... 205s Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... 205s Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... 205s Setting up r-base-core (4.5.2-1) ... 205s Creating config file /etc/R/Renviron with new version 205s Setting up libgvc6 (2.42.4-3build2) ... 205s Setting up graphviz (2.42.4-3build2) ... 205s Processing triggers for libc-bin (2.42-2ubuntu2) ... 206s autopkgtest [23:56:06]: test run-unit-test: [----------------------- 207s ============================= test session starts ============================== 207s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3 207s cachedir: .pytest_cache 207s rootdir: /tmp/autopkgtest.3bbA35/autopkgtest_tmp 207s plugins: requests_mock-1.12.1, mock-3.15.1, typeguard-4.4.2 212s collecting ... collected 395 items / 97 deselected / 298 selected 212s 212s tests/test_expand.py::test_simple_expand PASSED [ 0%] 212s tests/test_expand.py::test_allow_missing PASSED [ 0%] 212s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 212s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 212s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 212s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 212s tests/test_io.py::test_expand PASSED [ 2%] 212s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 2%] 212s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 212s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 212s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 212s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 212s tests/test_linting.py::test_lint[envvars-positive] SKIPPED (This tes...) [ 4%] 213s tests/test_linting.py::test_lint[envvars-negative] SKIPPED (This tes...) [ 4%] 213s tests/test_linting.py::test_lint[missing_software_definition-positive] SKIPPED [ 5%] 213s tests/test_linting.py::test_lint[missing_software_definition-negative] SKIPPED [ 5%] 213s tests/test_linting.py::test_lint[long_run-positive] SKIPPED (This te...) [ 5%] 213s tests/test_linting.py::test_lint[long_run-negative] SKIPPED (This te...) [ 6%] 213s tests/test_linting.py::test_lint[absolute_paths-positive] SKIPPED (T...) [ 6%] 213s tests/test_linting.py::test_lint[absolute_paths-negative] SKIPPED (T...) [ 6%] 213s tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 7%] 213s tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 7%] 213s tests/test_linting.py::test_lint[tab_usage-positive] SKIPPED (This t...) [ 7%] 213s tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED (This t...) [ 8%] 213s tests/test_linting.py::test_lint[singularity-positive] SKIPPED (This...) [ 8%] 213s tests/test_linting.py::test_lint[singularity-negative] SKIPPED (This...) [ 8%] 213s tests/test_linting.py::test_lint[iofile_by_index-positive] SKIPPED (...) [ 9%] 213s tests/test_linting.py::test_lint[iofile_by_index-negative] SKIPPED (...) [ 9%] 213s tests/test_linting.py::test_lint[path_add-positive] SKIPPED (This te...) [ 9%] 213s tests/test_linting.py::test_lint[path_add-negative] SKIPPED (This te...) [ 10%] 213s tests/test_linting.py::test_lint[version-positive] SKIPPED (This tes...) [ 10%] 213s tests/test_linting.py::test_lint[version-negative] SKIPPED (This tes...) [ 10%] 213s tests/test_linting.py::test_lint[log_directive-positive] SKIPPED (Th...) [ 11%] 213s tests/test_linting.py::test_lint[log_directive-negative] SKIPPED (Th...) [ 11%] 213s tests/test_linting.py::test_lint[params_prefix-positive] SKIPPED (Th...) [ 11%] 213s tests/test_linting.py::test_lint[params_prefix-negative] SKIPPED (Th...) [ 12%] 213s tests/test_linting.py::test_lint[dynamic-positive] SKIPPED (This tes...) [ 12%] 213s tests/test_linting.py::test_lint[dynamic-negative] SKIPPED (This tes...) [ 12%] 213s tests/test_linting.py::test_lint[not_used_params-positive] SKIPPED (...) [ 13%] 213s tests/test_linting.py::test_lint[not_used_params-negative] SKIPPED (...) [ 13%] 213s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 213s tests/test_schema.py::test_config PASSED [ 14%] 213s tests/test_schema.py::test_config_ref PASSED [ 14%] 213s tests/test_schema.py::test_dataframe PASSED [ 14%] 213s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 213s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 213s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 213s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 213s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) [ 16%] 213s tests/testapi.py::test_keep_logger PASSED [ 16%] 213s tests/testapi.py::test_workflow_calling SKIPPED (This test is known ...) [ 17%] 213s tests/testapi.py::test_run_script_directive PASSED [ 17%] 214s tests/testapi.py::test_run_script_directive_async PASSED [ 17%] 214s tests/testapi.py::test_dicts_in_config PASSED [ 18%] 215s tests/testapi.py::test_lockexception PASSED [ 18%] 215s tests/tests.py::test_list_untracked PASSED [ 18%] 216s tests/tests.py::test_delete_all_output PASSED [ 19%] 217s tests/tests.py::test_github_issue_14 PASSED [ 19%] 217s tests/tests.py::test_issue956 PASSED [ 19%] 217s tests/tests.py::test01 PASSED [ 20%] 217s tests/tests.py::test02 PASSED [ 20%] 217s tests/tests.py::test03 PASSED [ 20%] 217s tests/tests.py::test04 PASSED [ 21%] 219s tests/tests.py::test05 PASSED [ 21%] 219s tests/tests.py::test06 PASSED [ 21%] 219s tests/tests.py::test07 PASSED [ 22%] 219s tests/tests.py::test08 PASSED [ 22%] 219s tests/tests.py::test09 PASSED [ 22%] 219s tests/tests.py::test10 PASSED [ 23%] 219s tests/tests.py::test11 PASSED [ 23%] 220s tests/tests.py::test12 PASSED [ 23%] 220s tests/tests.py::test13 PASSED [ 24%] 270s tests/tests.py::test14 PASSED [ 24%] 320s tests/tests.py::test_cluster_statusscript PASSED [ 24%] 342s tests/tests.py::test_cluster_cancelscript PASSED [ 25%] 362s tests/tests.py::test_cluster_sidecar PASSED [ 25%] 404s tests/tests.py::test_cluster_cancelscript_nargs1 PASSED [ 25%] 425s tests/tests.py::test_cluster_statusscript_multi PASSED [ 26%] 425s tests/tests.py::test15 PASSED [ 26%] 425s tests/tests.py::test_glpk_solver PASSED [ 26%] 425s tests/tests.py::test_coin_solver PASSED [ 27%] 425s tests/tests.py::test_directory PASSED [ 27%] 426s tests/tests.py::test_directory2 PASSED [ 27%] 427s tests/tests.py::test_dynamic PASSED [ 28%] 427s tests/tests.py::test_params PASSED [ 28%] 427s tests/tests.py::test_same_wildcard PASSED [ 28%] 427s tests/tests.py::test_conditional PASSED [ 29%] 427s tests/tests.py::test_unpack_dict PASSED [ 29%] 427s tests/tests.py::test_unpack_list PASSED [ 29%] 428s tests/tests.py::test_shell PASSED [ 30%] 468s tests/tests.py::test_temp PASSED [ 30%] 468s tests/tests.py::test_keyword_list PASSED [ 30%] 468s tests/tests.py::test_subworkflows PASSED [ 31%] 468s tests/tests.py::test_globwildcards PASSED [ 31%] 468s tests/tests.py::test_local_import PASSED [ 31%] 469s tests/tests.py::test_ruledeps PASSED [ 32%] 469s tests/tests.py::test_persistent_dict PASSED [ 32%] 469s tests/tests.py::test_touch PASSED [ 32%] 469s tests/tests.py::test_touch_flag_with_directories PASSED [ 33%] 469s tests/tests.py::test_config PASSED [ 33%] 469s tests/tests.py::test_update_config PASSED [ 33%] 470s tests/tests.py::test_config_merging PASSED [ 34%] 471s tests/tests.py::test_wildcard_keyword PASSED [ 34%] 492s tests/tests.py::test_benchmark PASSED [ 34%] 492s tests/tests.py::test_temp_expand PASSED [ 35%] 492s tests/tests.py::test_wildcard_count_ambiguity PASSED [ 35%] 493s tests/tests.py::test_srcdir PASSED [ 35%] 493s tests/tests.py::test_multiple_includes PASSED [ 36%] 493s tests/tests.py::test_name_override PASSED [ 36%] 493s tests/tests.py::test_yaml_config PASSED [ 36%] 543s tests/tests.py::test_cluster_sync PASSED [ 37%] 543s tests/tests.py::test_symlink_temp SKIPPED (This does not work reliab...) [ 37%] 543s tests/tests.py::test_empty_include PASSED [ 37%] 546s tests/tests.py::test_shadow PASSED [ 38%] 548s tests/tests.py::test_shadow_copy PASSED [ 38%] 548s tests/tests.py::test_shadow_prefix PASSED [ 38%] 568s tests/tests.py::test_shadow_prefix_qsub PASSED [ 39%] 569s tests/tests.py::test_shadowed_log PASSED [ 39%] 569s tests/tests.py::test_until PASSED [ 39%] 569s tests/tests.py::test_omitfrom PASSED [ 40%] 570s tests/tests.py::test_nonstr_params PASSED [ 40%] 572s tests/tests.py::test_delete_output PASSED [ 40%] 572s tests/tests.py::test_input_generator PASSED [ 41%] 573s tests/tests.py::test_protected_symlink_output PASSED [ 41%] 573s tests/tests.py::test_issue328 PASSED [ 41%] 573s tests/tests.py::test_get_log_none PASSED [ 42%] 573s tests/tests.py::test_get_log_both PASSED [ 42%] 574s tests/tests.py::test_get_log_stderr PASSED [ 42%] 574s tests/tests.py::test_get_log_stdout PASSED [ 43%] 574s tests/tests.py::test_get_log_complex PASSED [ 43%] 574s tests/tests.py::test_spaces_in_fnames PASSED [ 43%] 574s tests/tests.py::test_deferred_func_eval PASSED [ 44%] 574s tests/tests.py::test_format_params PASSED [ 44%] 575s tests/tests.py::test_rule_defined_in_for_loop PASSED [ 44%] 575s tests/tests.py::test_issue381 PASSED [ 45%] 575s tests/tests.py::test_format_wildcards PASSED [ 45%] 576s tests/tests.py::test_with_parentheses PASSED [ 45%] 576s tests/tests.py::test_dup_out_patterns PASSED [ 46%] 596s tests/tests.py::test_restartable_job_cmd_exit_1_no_restart PASSED [ 46%] 626s tests/tests.py::test_restartable_job_cmd_exit_1_one_restart PASSED [ 46%] 666s tests/tests.py::test_restartable_job_qsub_exit_1 PASSED [ 47%] 667s tests/tests.py::test_threads PASSED [ 47%] 667s tests/tests.py::test_threads0 PASSED [ 47%] 667s tests/tests.py::test_dynamic_temp PASSED [ 48%] 667s tests/tests.py::test_issue260 PASSED [ 48%] 668s tests/tests.py::test_run_namedlist PASSED [ 48%] 668s tests/tests.py::test_gs_requester_pays SKIPPED (Need to choose how t...) [ 49%] 668s tests/tests.py::test_profile PASSED [ 49%] 668s tests/tests.py::test_issue612 PASSED [ 50%] 668s tests/tests.py::test_bash PASSED [ 50%] 668s tests/tests.py::test_inoutput_is_path PASSED [ 50%] 669s tests/tests.py::test_log_input PASSED [ 51%] 669s tests/tests.py::test_issue805 PASSED [ 51%] 669s tests/tests.py::test_issue823_1 PASSED [ 51%] 670s tests/tests.py::test_issue823_2 PASSED [ 52%] 670s tests/tests.py::test_issue823_3 PASSED [ 52%] 670s tests/tests.py::test_pathlib PASSED [ 52%] 670s tests/tests.py::test_pathlib_missing_file PASSED [ 53%] 710s tests/tests.py::test_group_jobs PASSED [ 53%] 730s tests/tests.py::test_group_jobs_attempts PASSED [ 53%] 750s tests/tests.py::test_group_jobs_resources PASSED [ 54%] 770s tests/tests.py::test_group_jobs_resources_with_max_threads PASSED [ 54%] 790s tests/tests.py::test_group_jobs_resources_with_limited_resources PASSED [ 54%] 811s tests/tests.py::test_global_resource_limits_limit_scheduling_of_groups PASSED [ 55%] 831s tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 851s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 871s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 891s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 911s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 931s tests/tests.py::test_group_job_fail PASSED [ 57%] 931s tests/tests.py::test_validate PASSED [ 57%] 931s tests/tests.py::test_validate_fail PASSED [ 57%] 931s tests/tests.py::test_issue854 PASSED [ 58%] 961s tests/tests.py::test_issue850 PASSED [ 58%] 991s tests/tests.py::test_issue860 PASSED [ 58%] 991s tests/tests.py::test_issue894 PASSED [ 59%] 992s tests/tests.py::test_issue584 PASSED [ 59%] 992s tests/tests.py::test_issue912 PASSED [ 59%] 1022s tests/tests.py::test_job_properties PASSED [ 60%] 1022s tests/tests.py::test_issue916 PASSED [ 60%] 1062s tests/tests.py::test_issue930 PASSED [ 60%] 1062s tests/tests.py::test_issue1037 PASSED [ 61%] 1062s tests/tests.py::test_issue1046 PASSED [ 61%] 1062s tests/tests.py::test_checkpoints PASSED [ 61%] 1063s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 1063s tests/tests.py::test_issue1092 PASSED [ 62%] 1063s tests/tests.py::test_issue958 PASSED [ 62%] 1063s tests/tests.py::test_issue471 PASSED [ 63%] 1063s tests/tests.py::test_issue1085 PASSED [ 63%] 1063s tests/tests.py::test_expand_flag PASSED [ 63%] 1064s tests/tests.py::test_tmpdir PASSED [ 64%] 1064s tests/tests.py::test_tmpdir_default PASSED [ 64%] 1064s tests/tests.py::test_issue1284 PASSED [ 64%] 1064s tests/tests.py::test_issue1281 PASSED [ 65%] 1064s tests/tests.py::test_filegraph PASSED [ 65%] 1064s tests/tests.py::test_batch PASSED [ 65%] 1064s tests/tests.py::test_batch_final PASSED [ 66%] 1064s tests/tests.py::test_batch_fail PASSED [ 66%] 1065s tests/tests.py::test_github_issue52 PASSED [ 66%] 1065s tests/tests.py::test_envvars PASSED [ 67%] 1065s tests/tests.py::test_github_issue105 PASSED [ 67%] 1065s tests/tests.py::test_github_issue413 PASSED [ 67%] 1065s tests/tests.py::test_github_issue627 PASSED [ 68%] 1066s tests/tests.py::test_github_issue727 PASSED [ 68%] 1067s tests/tests.py::test_github_issue988 PASSED [ 68%] 1067s tests/tests.py::test_output_file_cache PASSED [ 69%] 1067s tests/tests.py::test_multiext PASSED [ 69%] 1067s tests/tests.py::test_core_dependent_threads PASSED [ 69%] 1067s tests/tests.py::TestParseCoresJobs::test_no_exec[input0-output0] PASSED [ 70%] 1067s tests/tests.py::TestParseCoresJobs::test_no_exec[input1-output1] PASSED [ 70%] 1067s tests/tests.py::TestParseCoresJobs::test_no_exec[input2-output2] PASSED [ 70%] 1067s tests/tests.py::TestParseCoresJobs::test_no_exec[input3-output3] PASSED [ 71%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input0-output0] PASSED [ 71%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input1-output1] PASSED [ 71%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1067s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1067s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1067s tests/tests.py::test_linting PASSED [ 76%] 1097s tests/tests.py::test_string_resources PASSED [ 76%] 1097s tests/tests.py::test_github_issue456 PASSED [ 76%] 1097s tests/tests.py::test_scatter_gather PASSED [ 77%] 1097s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1097s tests/tests.py::test_github_issue640 PASSED [ 77%] 1099s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1099s tests/tests.py::test_metadata_migration PASSED [ 78%] 1102s tests/tests.py::test_paramspace PASSED [ 78%] 1106s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1125s tests/tests.py::test_github_issue806 PASSED [ 79%] 1125s tests/tests.py::test_long_shell PASSED [ 79%] 1125s tests/tests.py::test_modules_all PASSED [ 80%] 1125s tests/tests.py::test_module_nested PASSED [ 80%] 1125s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1125s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1125s tests/tests.py::test_modules_specific PASSED [ 81%] 1125s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1125s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1125s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1125s tests/tests.py::test_handover PASSED [ 82%] 1126s tests/tests.py::test_source_path PASSED [ 83%] 1126s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1126s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1126s tests/tests.py::test_set_resources PASSED [ 84%] 1126s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1126s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1127s tests/tests.py::test_all_temp PASSED [ 85%] 1127s tests/tests.py::test_strict_mode PASSED [ 85%] 1147s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1147s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1167s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1168s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1250s tests/tests.py::test_issue1331 PASSED [ 87%] 1250s tests/tests.py::test_default_target PASSED [ 87%] 1251s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1253s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1253s tests/tests.py::test_template_engine PASSED [ 88%] 1253s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1273s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1275s tests/tests.py::test_service_jobs PASSED [ 89%] 1275s tests/tests.py::test_incomplete_params PASSED [ 89%] 1276s tests/tests.py::test_github_issue261 PASSED [ 90%] 1276s tests/tests.py::test_pipe_depend PASSED [ 90%] 1276s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1276s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1276s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1276s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1276s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1276s tests/tests.py::test_lazy_resources PASSED [ 92%] 1276s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1276s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1276s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1276s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1276s tests/tests.py::test_ensure_success PASSED [ 94%] 1276s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1277s tests/tests.py::test_fstring PASSED [ 94%] 1288s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1288s tests/tests.py::test_retries PASSED [ 95%] 1289s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1289s tests/tests.py::test_module_input_func PASSED [ 96%] 1289s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1289s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1290s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1290s tests/tests.py::test_github_issue929 PASSED [ 97%] 1291s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1291s tests/tests.py::test_inferred_resources PASSED [ 98%] 1291s tests/tests.py::test_workflow_profile PASSED [ 98%] 1292s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1292s tests/tests.py::test_localrule PASSED [ 99%] 1292s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1292s tests/tests.py::test_config_yte PASSED [100%] 1292s 1292s =============================== warnings summary =============================== 1292s tests/test_schema.py: 12 warnings 1292s tests/tests.py: 6 warnings 1292s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1292s from jsonschema import validators, RefResolver 1292s 1292s tests/testapi.py::test_keep_logger 1292s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1292s import pkg_resources 1292s 1292s tests/testapi.py::test_lockexception 1292s /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but tests/testapi.py::test_lockexception returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? 1292s warnings.warn( 1292s 1292s tests/tests.py::test_glpk_solver 1292s :891: DeprecationWarning: This process (pid=3715) is multi-threaded, use of fork() may lead to deadlocks in the child. 1292s 1292s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1292s === 252 passed, 46 skipped, 97 deselected, 21 warnings in 1085.01s (0:18:05) === 1293s ============================= test session starts ============================== 1293s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3 1293s cachedir: .pytest_cache 1293s rootdir: /tmp/autopkgtest.3bbA35/autopkgtest_tmp 1293s plugins: requests_mock-1.12.1, mock-3.15.1, typeguard-4.4.2 1298s collecting ... collected 395 items / 388 deselected / 7 selected 1298s 1318s tests/tests.py::test_group_job_resources_with_pipe PASSED [ 14%] 1318s tests/tests.py::test_group_job_resources_with_pipe_with_too_much_constraint PASSED [ 28%] 1378s tests/tests.py::test_multicomp_group_jobs Timeout (0:01:00)! 1378s Thread 0x0000fd4830eaf180 (most recent call first): 1378s File "/usr/lib/python3.13/selectors.py", line 452 in select 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1378s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1378s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1378s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1378s File "/usr/lib/python3.13/threading.py", line 994 in run 1378s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1378s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1378s 1378s Thread 0x0000fd48332ef180 (most recent call first): 1378s File "/usr/lib/python3.13/selectors.py", line 452 in select 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1378s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1378s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1378s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1378s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1378s File "/usr/lib/python3.13/threading.py", line 994 in run 1378s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1378s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1378s 1378s Thread 0x0000fd48316bf180 (most recent call first): 1378s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1378s File "/usr/lib/python3.13/threading.py", line 994 in run 1378s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1378s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1378s 1378s Thread 0x0000fd4831ecf180 (most recent call first): 1378s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1378s File "/usr/lib/python3.13/threading.py", line 994 in run 1378s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1378s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1378s 1378s Thread 0x0000fd4832adf180 (most recent call first): 1378s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1378s File "/usr/lib/python3.13/threading.py", line 994 in run 1378s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1378s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1378s 1378s Thread 0x0000fd483b0be760 (most recent call first): 1378s File "/usr/lib/python3.13/threading.py", line 359 in wait 1378s File "/usr/lib/python3.13/threading.py", line 511 in acquire 1378s File "/usr/lib/python3/dist-packages/snakemake/scheduler.py", line 546 in schedule 1378s File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 1242 in execute 1378s File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 792 in snakemake 1378s File "/tmp/autopkgtest.3bbA35/autopkgtest_tmp/tests/common.py", line 234 in run 1378s File "/tmp/autopkgtest.3bbA35/autopkgtest_tmp/tests/tests.py", line 1196 in test_multicomp_group_jobs 1378s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call 1378s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1378s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1378s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1378s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call 1378s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1378s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1378s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol 1378s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol 1378s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1378s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1378s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1378s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop 1378s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1378s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1378s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1378s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main 1378s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session 1378s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main 1378s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1378s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1378s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1378s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main 1378s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main 1378s File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in 1378s File "", line 88 in _run_code 1378s File "", line 198 in _run_module_as_main 1388s PASSED [ 42%] 1390s tests/tests.py::test_pipes PASSED [ 57%] 1391s tests/tests.py::test_pipes_multiple PASSED [ 71%] 1392s tests/tests.py::test_pipes_fail PASSED [ 85%] 1403s tests/tests.py::test_pipes2 PASSED [100%] 1403s 1403s =============================== warnings summary =============================== 1403s tests/tests.py::test_group_job_resources_with_pipe 1403s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1403s import pkg_resources 1403s 1403s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1403s =========== 7 passed, 388 deselected, 1 warning in 110.21s (0:01:50) =========== 1404s autopkgtest [00:16:04]: test run-unit-test: -----------------------] 1404s autopkgtest [00:16:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1404s run-unit-test PASS 1405s autopkgtest [00:16:05]: @@@@@@@@@@@@@@@@@@@@ summary 1405s command1 PASS 1405s run-unit-test PASS