0s autopkgtest [06:33:04]: starting date and time: 2026-01-23 06:33:04+0000 0s autopkgtest [06:33:04]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [06:33:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s6jhzfal/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade seqsero --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-1.secgroup --name adt-resolute-arm64-seqsero-20260123-063304-juju-7f2275-prod-proposed-migration-environment-2-d27492b8-9709-46a1-82c5-fd3e7be71d71 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-seqsero-20260123-063304-juju-7f2275-prod-proposed-migration-environment-2-d27492b8-9709-46a1-82c5-fd3e7be71d71 from image adt/ubuntu-resolute-arm64-server-20260122.img (UUID ed27afc7-5f46-4e8b-ad73-864280a0ddbb)... 68s autopkgtest [06:34:12]: testbed dpkg architecture: arm64 68s autopkgtest [06:34:12]: testbed apt version: 3.1.12 68s autopkgtest [06:34:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s autopkgtest [06:34:12]: testbed release detected to be: None 69s autopkgtest [06:34:13]: updating testbed package index (apt update) 69s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 70s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1105 kB] 70s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 70s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.6 kB] 70s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [120 kB] 70s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3324 B] 70s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [7876 B] 70s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 70s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [950 kB] 71s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [20.8 kB] 71s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [10.7 kB] 71s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [456 B] 74s Fetched 2465 kB in 2s (1483 kB/s) 75s Reading package lists... 76s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 76s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Reading package lists... 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 78s The following packages were automatically installed and are no longer required: 78s python3.13 python3.13-minimal 78s Use 'sudo apt autoremove' to remove them. 78s The following NEW packages will be installed: 78s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 78s The following packages will be upgraded: 78s apt dhcpcd-base libapt-pkg7.0 libplymouth5 libpython3-stdlib plymouth 78s plymouth-theme-ubuntu-text python3 python3-gdbm python3-minimal 78s 10 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 9695 kB of archives. 78s After this operation, 26.0 MB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 79s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 79s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.14.2-1 [11.1 kB] 79s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.14.2-1 [28.2 kB] 79s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.14.2-1 [22.9 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 79s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.14.2-1 [10.9 kB] 79s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.13 [1067 kB] 79s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.13 [1412 kB] 79s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 dhcpcd-base arm64 1:10.3.0-7 [223 kB] 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libplymouth5 arm64 24.004.60+git20250831.4a3c171d-0ubuntu4 [141 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 plymouth-theme-ubuntu-text arm64 24.004.60+git20250831.4a3c171d-0ubuntu4 [10.0 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 plymouth arm64 24.004.60+git20250831.4a3c171d-0ubuntu4 [138 kB] 79s dpkg-preconfigure: unable to re-open stdin: No such file or directory 80s Fetched 9695 kB in 1s (13.4 MB/s) 80s Selecting previously unselected package libpython3.14-minimal:arm64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135223 files and directories currently installed.) 80s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_arm64.deb ... 80s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 80s Selecting previously unselected package python3.14-minimal. 80s Preparing to unpack .../python3.14-minimal_3.14.2-1_arm64.deb ... 80s Unpacking python3.14-minimal (3.14.2-1) ... 80s Preparing to unpack .../python3-gdbm_3.14.2-1_arm64.deb ... 80s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 80s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 80s Setting up python3.14-minimal (3.14.2-1) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 81s Preparing to unpack .../python3-minimal_3.14.2-1_arm64.deb ... 82s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 82s Setting up python3-minimal (3.14.2-1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 82s Preparing to unpack .../0-python3_3.14.2-1_arm64.deb ... 82s running python pre-rtupdate hooks for python3.14... 82s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 82s Selecting previously unselected package libpython3.14-stdlib:arm64. 82s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_arm64.deb ... 82s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 82s Selecting previously unselected package python3.14. 82s Preparing to unpack .../2-python3.14_3.14.2-1_arm64.deb ... 82s Unpacking python3.14 (3.14.2-1) ... 82s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_arm64.deb ... 82s Unpacking libpython3-stdlib:arm64 (3.14.2-1) over (3.13.7-1) ... 82s Preparing to unpack .../4-libapt-pkg7.0_3.1.13_arm64.deb ... 82s Unpacking libapt-pkg7.0:arm64 (3.1.13) over (3.1.12) ... 83s Preparing to unpack .../5-apt_3.1.13_arm64.deb ... 83s Unpacking apt (3.1.13) over (3.1.12) ... 83s Preparing to unpack .../6-dhcpcd-base_1%3a10.3.0-7_arm64.deb ... 83s Unpacking dhcpcd-base (1:10.3.0-7) over (1:10.3.0-3) ... 83s Preparing to unpack .../7-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_arm64.deb ... 83s Unpacking libplymouth5:arm64 (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 83s Preparing to unpack .../8-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_arm64.deb ... 83s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 83s Preparing to unpack .../9-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_arm64.deb ... 83s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 83s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 83s Setting up dhcpcd-base (1:10.3.0-7) ... 83s Setting up libplymouth5:arm64 (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 83s Setting up libapt-pkg7.0:arm64 (3.1.13) ... 83s Setting up python3.14 (3.14.2-1) ... 84s Setting up libpython3-stdlib:arm64 (3.14.2-1) ... 84s Setting up apt (3.1.13) ... 85s Setting up python3-gdbm (3.14.2-1) ... 85s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 85s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 85s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 86s Setting up python3 (3.14.2-1) ... 86s running python rtupdate hooks for python3.14... 86s running python post-rtupdate hooks for python3.14... 86s Processing triggers for libc-bin (2.42-2ubuntu4) ... 86s Processing triggers for systemd (259-1ubuntu2) ... 86s Processing triggers for man-db (2.13.1-1) ... 87s Processing triggers for initramfs-tools (0.150ubuntu7) ... 87s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 104s System running in EFI mode, skipping. 104s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 104s Processing triggers for initramfs-tools (0.150ubuntu7) ... 104s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 118s System running in EFI mode, skipping. 118s autopkgtest [06:35:02]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 120s The following packages were automatically installed and are no longer required: 120s python3.13 python3.13-minimal 120s Use 'sudo apt autoremove' to remove them. 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 121s The following packages will be REMOVED: 121s python3.13* python3.13-minimal* 121s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 121s After this operation, 7766 kB disk space will be freed. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135992 files and directories currently installed.) 121s Removing python3.13 (3.13.11-1) ... 121s Removing python3.13-minimal (3.13.11-1) ... 122s Processing triggers for man-db (2.13.1-1) ... 122s Processing triggers for systemd (259-1ubuntu2) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135965 files and directories currently installed.) 122s Purging configuration files for python3.13-minimal (3.13.11-1) ... 123s autopkgtest [06:35:07]: rebooting testbed after setup commands that affected boot 160s autopkgtest [06:35:44]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 162s autopkgtest [06:35:46]: @@@@@@@@@@@@@@@@@@@@ apt-source seqsero 164s Get:1 http://ftpmaster.internal/ubuntu resolute/universe seqsero 1.0.1+dfsg-6build1 (dsc) [2023 B] 164s Get:2 http://ftpmaster.internal/ubuntu resolute/universe seqsero 1.0.1+dfsg-6build1 (tar) [356 kB] 164s Get:3 http://ftpmaster.internal/ubuntu resolute/universe seqsero 1.0.1+dfsg-6build1 (diff) [43.2 kB] 164s gpgv: Signature made Fri Jan 9 20:22:15 2026 UTC 164s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 164s gpgv: Can't check signature: No public key 164s dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6build1.dsc: no acceptable signature found 164s autopkgtest [06:35:48]: testing package seqsero version 1.0.1+dfsg-6build1 165s autopkgtest [06:35:49]: build not needed 165s autopkgtest [06:35:49]: test run-unit-test: preparing testbed 165s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Solving dependencies... 166s The following NEW packages will be installed: 166s bwa fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 166s fonts-urw-base35 libabsl20240722 libaec0 libblas3 libcairo2 libdeflate0 166s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 166s libharfbuzz0b libhdf5-310 libhts3t64 libhtscodecs2 libimagequant0 libjbig0 166s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libmbedcrypto16 166s libmbedtls21 libmbedx509-7 libncbi-vdb3 libncbi-wvdb3 libopenjp2-7 166s libpixman-1-0 libraqm0 libre2-11 libsharpyuv0 libsz2 libtiff6 libwebp7 166s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 166s ncbi-vdb-data python3-biopython python3-cairo python3-charset-normalizer 166s python3-freetype python3-numpy python3-numpy-dev python3-pil 166s python3-reportlab python3-rlpycairo samtools seqsero sgml-base sra-toolkit 166s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 167s 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 44.0 MB of archives. 167s After this operation, 153 MB of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 167s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 167s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 167s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 167s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 167s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 bwa arm64 0.7.19-1 [202 kB] 167s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 167s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 167s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build2 [13.9 kB] 167s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 167s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 167s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7build1 [94.8 kB] 167s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 168s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.4ubuntu1 [38.2 kB] 168s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 168s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libabsl20240722 arm64 20240722.0-4ubuntu1 [508 kB] 168s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 168s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.4ubuntu1 [143 kB] 168s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 168s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 168s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 168s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 168s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 168s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 168s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-11ubuntu1 [147 kB] 168s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 168s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.0-4 [518 kB] 168s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 168s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 168s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2build1 [83.8 kB] 168s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 168s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 168s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 168s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 168s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 168s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 168s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.5-0.1ubuntu2 [256 kB] 168s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.5-0.1ubuntu2 [35.3 kB] 168s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.5-0.1ubuntu2 [126 kB] 168s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB] 168s Get:41 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1259 kB] 168s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1253 kB] 168s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 168s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libre2-11 arm64 20250805-1build1 [169 kB] 168s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 168s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 168s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 168s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 168s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 168s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 168s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.4-2 [169 kB] 168s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 168s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 168s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 168s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB] 168s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B] 168s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.9-1 [1149 kB] 168s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 168s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19build1 [20.3 kB] 168s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3build1 [278 kB] 168s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.86+dfsg-1 [1675 kB] 168s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 samtools arm64 1.22.1-1 [631 kB] 168s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 sra-toolkit arm64 3.2.1+dfsg-4ubuntu5 [7495 kB] 169s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 seqsero arm64 1.0.1+dfsg-6build1 [369 kB] 169s Fetched 44.0 MB in 2s (19.2 MB/s) 169s Selecting previously unselected package python3-numpy-dev:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135967 files and directories currently installed.) 169s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 169s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 169s Selecting previously unselected package libblas3:arm64. 169s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 169s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 169s Selecting previously unselected package libgfortran5:arm64. 169s Preparing to unpack .../02-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 169s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 169s Selecting previously unselected package liblapack3:arm64. 169s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 169s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 169s Selecting previously unselected package python3-numpy. 169s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 169s Unpacking python3-numpy (1:2.3.5+ds-3) ... 170s Selecting previously unselected package bwa. 170s Preparing to unpack .../05-bwa_0.7.19-1_arm64.deb ... 170s Unpacking bwa (0.7.19-1) ... 170s Selecting previously unselected package fonts-dejavu-mono. 170s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8build1_all.deb ... 170s Unpacking fonts-dejavu-mono (2.37-8build1) ... 170s Selecting previously unselected package fonts-dejavu-core. 170s Preparing to unpack .../07-fonts-dejavu-core_2.37-8build1_all.deb ... 170s Unpacking fonts-dejavu-core (2.37-8build1) ... 170s Selecting previously unselected package libfontenc1:arm64. 170s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build2_arm64.deb ... 170s Unpacking libfontenc1:arm64 (1:1.1.8-1build2) ... 170s Selecting previously unselected package x11-common. 170s Preparing to unpack .../09-x11-common_1%3a7.7+24ubuntu1_all.deb ... 170s Unpacking x11-common (1:7.7+24ubuntu1) ... 170s Selecting previously unselected package xfonts-encodings. 170s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 170s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 170s Selecting previously unselected package xfonts-utils. 170s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7build1_arm64.deb ... 170s Unpacking xfonts-utils (1:7.7+7build1) ... 170s Selecting previously unselected package fonts-urw-base35. 170s Preparing to unpack .../12-fonts-urw-base35_20200910-8build1_all.deb ... 170s Unpacking fonts-urw-base35 (20200910-8build1) ... 170s Selecting previously unselected package fontconfig-config. 170s Preparing to unpack .../13-fontconfig-config_2.15.0-2.4ubuntu1_arm64.deb ... 171s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 171s Selecting previously unselected package fonts-dejavu-extra. 171s Preparing to unpack .../14-fonts-dejavu-extra_2.37-8build1_all.deb ... 171s Unpacking fonts-dejavu-extra (2.37-8build1) ... 171s Selecting previously unselected package libabsl20240722:arm64. 171s Preparing to unpack .../15-libabsl20240722_20240722.0-4ubuntu1_arm64.deb ... 171s Unpacking libabsl20240722:arm64 (20240722.0-4ubuntu1) ... 171s Selecting previously unselected package libaec0:arm64. 171s Preparing to unpack .../16-libaec0_1.1.4-2_arm64.deb ... 171s Unpacking libaec0:arm64 (1.1.4-2) ... 171s Selecting previously unselected package libfontconfig1:arm64. 171s Preparing to unpack .../17-libfontconfig1_2.15.0-2.4ubuntu1_arm64.deb ... 171s Unpacking libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 171s Selecting previously unselected package libpixman-1-0:arm64. 171s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_arm64.deb ... 171s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 171s Selecting previously unselected package libxcb-render0:arm64. 171s Preparing to unpack .../19-libxcb-render0_1.17.0-2build1_arm64.deb ... 171s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 171s Selecting previously unselected package libxcb-shm0:arm64. 171s Preparing to unpack .../20-libxcb-shm0_1.17.0-2build1_arm64.deb ... 171s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 171s Selecting previously unselected package libxrender1:arm64. 171s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_arm64.deb ... 171s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 171s Selecting previously unselected package libcairo2:arm64. 171s Preparing to unpack .../22-libcairo2_1.18.4-3_arm64.deb ... 171s Unpacking libcairo2:arm64 (1.18.4-3) ... 171s Selecting previously unselected package libdeflate0:arm64. 171s Preparing to unpack .../23-libdeflate0_1.23-2_arm64.deb ... 171s Unpacking libdeflate0:arm64 (1.23-2) ... 171s Selecting previously unselected package libgomp1:arm64. 171s Preparing to unpack .../24-libgomp1_15.2.0-11ubuntu1_arm64.deb ... 171s Unpacking libgomp1:arm64 (15.2.0-11ubuntu1) ... 171s Selecting previously unselected package libgraphite2-3:arm64. 171s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 171s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 171s Selecting previously unselected package libharfbuzz0b:arm64. 171s Preparing to unpack .../26-libharfbuzz0b_12.3.0-4_arm64.deb ... 171s Unpacking libharfbuzz0b:arm64 (12.3.0-4) ... 171s Selecting previously unselected package libsz2:arm64. 171s Preparing to unpack .../27-libsz2_1.1.4-2_arm64.deb ... 171s Unpacking libsz2:arm64 (1.1.4-2) ... 171s Selecting previously unselected package libhdf5-310:arm64. 171s Preparing to unpack .../28-libhdf5-310_1.14.5+repack-4_arm64.deb ... 171s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 171s Selecting previously unselected package libhtscodecs2:arm64. 172s Preparing to unpack .../29-libhtscodecs2_1.6.1-2build1_arm64.deb ... 172s Unpacking libhtscodecs2:arm64 (1.6.1-2build1) ... 172s Selecting previously unselected package libhts3t64:arm64. 172s Preparing to unpack .../30-libhts3t64_1.22.1+ds2-1_arm64.deb ... 172s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 172s Selecting previously unselected package libimagequant0:arm64. 172s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_arm64.deb ... 172s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 172s Selecting previously unselected package libjpeg-turbo8:arm64. 172s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 172s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 172s Selecting previously unselected package libjpeg8:arm64. 172s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_arm64.deb ... 172s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 172s Selecting previously unselected package liblcms2-2:arm64. 172s Preparing to unpack .../34-liblcms2-2_2.17-1_arm64.deb ... 172s Unpacking liblcms2-2:arm64 (2.17-1) ... 172s Selecting previously unselected package liblerc4:arm64. 172s Preparing to unpack .../35-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 172s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 172s Selecting previously unselected package libmbedcrypto16:arm64. 172s Preparing to unpack .../36-libmbedcrypto16_3.6.5-0.1ubuntu2_arm64.deb ... 172s Unpacking libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 172s Selecting previously unselected package libmbedx509-7:arm64. 172s Preparing to unpack .../37-libmbedx509-7_3.6.5-0.1ubuntu2_arm64.deb ... 172s Unpacking libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 172s Selecting previously unselected package libmbedtls21:arm64. 172s Preparing to unpack .../38-libmbedtls21_3.6.5-0.1ubuntu2_arm64.deb ... 172s Unpacking libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 172s Selecting previously unselected package ncbi-vdb-data. 172s Preparing to unpack .../39-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... 172s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... 172s Selecting previously unselected package libncbi-vdb3:arm64. 172s Preparing to unpack .../40-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... 172s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... 172s Selecting previously unselected package libncbi-wvdb3:arm64. 172s Preparing to unpack .../41-libncbi-wvdb3_3.2.1+dfsg-2_arm64.deb ... 172s Unpacking libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... 172s Selecting previously unselected package libraqm0:arm64. 172s Preparing to unpack .../42-libraqm0_0.10.3-1_arm64.deb ... 172s Unpacking libraqm0:arm64 (0.10.3-1) ... 172s Selecting previously unselected package libre2-11:arm64. 172s Preparing to unpack .../43-libre2-11_20250805-1build1_arm64.deb ... 172s Unpacking libre2-11:arm64 (20250805-1build1) ... 172s Selecting previously unselected package libsharpyuv0:arm64. 172s Preparing to unpack .../44-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 172s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 172s Selecting previously unselected package libjbig0:arm64. 172s Preparing to unpack .../45-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 172s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 172s Selecting previously unselected package libwebp7:arm64. 172s Preparing to unpack .../46-libwebp7_1.5.0-0.1build1_arm64.deb ... 172s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 172s Selecting previously unselected package libtiff6:arm64. 173s Preparing to unpack .../47-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 173s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 173s Selecting previously unselected package libwebpdemux2:arm64. 173s Preparing to unpack .../48-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 173s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 173s Selecting previously unselected package libwebpmux3:arm64. 173s Preparing to unpack .../49-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 173s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 173s Selecting previously unselected package python3-charset-normalizer. 173s Preparing to unpack .../50-python3-charset-normalizer_3.4.4-2_arm64.deb ... 173s Unpacking python3-charset-normalizer (3.4.4-2) ... 173s Selecting previously unselected package libopenjp2-7:arm64. 173s Preparing to unpack .../51-libopenjp2-7_2.5.4-1_arm64.deb ... 173s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 173s Selecting previously unselected package python3-pil:arm64. 173s Preparing to unpack .../52-python3-pil_12.0.0-1ubuntu1_arm64.deb ... 173s Unpacking python3-pil:arm64 (12.0.0-1ubuntu1) ... 173s Selecting previously unselected package python3-cairo. 173s Preparing to unpack .../53-python3-cairo_1.27.0-2build1_arm64.deb ... 173s Unpacking python3-cairo (1.27.0-2build1) ... 173s Selecting previously unselected package python3-freetype. 173s Preparing to unpack .../54-python3-freetype_2.5.1-2_all.deb ... 173s Unpacking python3-freetype (2.5.1-2) ... 173s Selecting previously unselected package python3-rlpycairo. 173s Preparing to unpack .../55-python3-rlpycairo_0.3.0-4_all.deb ... 173s Unpacking python3-rlpycairo (0.3.0-4) ... 173s Selecting previously unselected package python3-reportlab. 173s Preparing to unpack .../56-python3-reportlab_4.4.9-1_all.deb ... 173s Unpacking python3-reportlab (4.4.9-1) ... 173s Selecting previously unselected package sgml-base. 173s Preparing to unpack .../57-sgml-base_1.31+nmu1_all.deb ... 173s Unpacking sgml-base (1.31+nmu1) ... 173s Selecting previously unselected package xml-core. 173s Preparing to unpack .../58-xml-core_0.19build1_all.deb ... 173s Unpacking xml-core (0.19build1) ... 173s Selecting previously unselected package w3c-sgml-lib. 173s Preparing to unpack .../59-w3c-sgml-lib_1.3-3build1_all.deb ... 173s Unpacking w3c-sgml-lib (1.3-3build1) ... 173s Selecting previously unselected package python3-biopython. 173s Preparing to unpack .../60-python3-biopython_1.86+dfsg-1_arm64.deb ... 173s Unpacking python3-biopython (1.86+dfsg-1) ... 173s Selecting previously unselected package samtools. 173s Preparing to unpack .../61-samtools_1.22.1-1_arm64.deb ... 173s Unpacking samtools (1.22.1-1) ... 173s Selecting previously unselected package sra-toolkit. 174s Preparing to unpack .../62-sra-toolkit_3.2.1+dfsg-4ubuntu5_arm64.deb ... 174s Unpacking sra-toolkit (3.2.1+dfsg-4ubuntu5) ... 174s Selecting previously unselected package seqsero. 174s Preparing to unpack .../63-seqsero_1.0.1+dfsg-6build1_arm64.deb ... 174s Unpacking seqsero (1.0.1+dfsg-6build1) ... 174s Setting up libhtscodecs2:arm64 (1.6.1-2build1) ... 174s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 174s Setting up liblcms2-2:arm64 (2.17-1) ... 174s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 174s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 174s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 174s Setting up libxrender1:arm64 (1:0.9.12-1) ... 174s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 174s Setting up python3-charset-normalizer (3.4.4-2) ... 174s Setting up bwa (0.7.19-1) ... 174s Setting up x11-common (1:7.7+24ubuntu1) ... 174s Setting up libdeflate0:arm64 (1.23-2) ... 174s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 174s Setting up libgomp1:arm64 (15.2.0-11ubuntu1) ... 174s Setting up python3-freetype (2.5.1-2) ... 174s Setting up libabsl20240722:arm64 (20240722.0-4ubuntu1) ... 174s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 174s Setting up libaec0:arm64 (1.1.4-2) ... 174s Setting up libfontenc1:arm64 (1:1.1.8-1build2) ... 174s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 175s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 175s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 175s Setting up fonts-dejavu-mono (2.37-8build1) ... 175s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 175s Setting up fonts-dejavu-core (2.37-8build1) ... 175s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 175s Setting up libgfortran5:arm64 (15.2.0-11ubuntu1) ... 175s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 175s Setting up fonts-dejavu-extra (2.37-8build1) ... 175s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 175s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 175s Setting up libharfbuzz0b:arm64 (12.3.0-4) ... 175s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... 175s Setting up sgml-base (1.31+nmu1) ... 175s Setting up libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 175s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 175s Setting up libsz2:arm64 (1.1.4-2) ... 175s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 175s Setting up libre2-11:arm64 (20250805-1build1) ... 175s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 175s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 175s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 175s Setting up xfonts-utils (1:7.7+7build1) ... 175s Setting up samtools (1.22.1-1) ... 175s Setting up libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 175s Setting up libraqm0:arm64 (0.10.3-1) ... 175s Setting up python3-numpy (1:2.3.5+ds-3) ... 177s Setting up libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 177s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 177s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 177s Setting up xml-core (0.19build1) ... 177s Setting up libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 177s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... 177s Setting up fonts-urw-base35 (20200910-8build1) ... 177s Setting up libcairo2:arm64 (1.18.4-3) ... 177s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 178s Setting up libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... 178s Setting up sra-toolkit (3.2.1+dfsg-4ubuntu5) ... 178s Setting up python3-cairo (1.27.0-2build1) ... 178s Setting up python3-rlpycairo (0.3.0-4) ... 178s Setting up python3-reportlab (4.4.9-1) ... 179s Processing triggers for libc-bin (2.42-2ubuntu4) ... 179s Processing triggers for man-db (2.13.1-1) ... 180s Processing triggers for sgml-base (1.31+nmu1) ... 180s Setting up w3c-sgml-lib (1.3-3build1) ... 206s Setting up python3-biopython (1.86+dfsg-1) ... 207s Setting up seqsero (1.0.1+dfsg-6build1) ... 208s autopkgtest [06:36:32]: test run-unit-test: [----------------------- 208s Test for checking functionality 209s Traceback (most recent call last): 209s File "", line 1, in 209s from multiprocessing.forkserver import main; main(4, 6, ['__main__'], **{'sys_path': ['/usr/share/seqsero/libs', '/usr/lib/python314.zip', '/usr/lib/python3.14', '/usr/lib/python3.14/lib-dynload', '/usr/local/lib/python3.14/dist-packages', '/usr/lib/python3/dist-packages'], 'main_path': '/usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py', 'authkey_r': 8}) 209s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 209s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 217, in main 209s spawn.import_main_path(main_path) 209s ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 209s File "/usr/lib/python3.14/multiprocessing/spawn.py", line 307, in import_main_path 209s _fixup_main_from_path(main_path) 209s ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 209s File "/usr/lib/python3.14/multiprocessing/spawn.py", line 297, in _fixup_main_from_path 209s main_content = runpy.run_path(main_path, 209s run_name="__mp_main__") 209s File "", line 287, in run_path 209s File "", line 98, in _run_module_code 209s File "", line 88, in _run_code 209s File "/usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py", line 19, in 209s file_name=sys.argv[1] 209s ~~~~~~~~^^^ 209s IndexError: list index out of range 211s Traceback (most recent call last): 211s File "/usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py", line 315, in 211s main() 211s ~~~~^^ 211s File "/usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py", line 261, in main 211s p.start() 211s ~~~~~~~^^ 211s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 211s self._popen = self._Popen(self) 211s ~~~~~~~~~~~^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 211s return _default_context.get_context().Process._Popen(process_obj) 211s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 211s return Popen(process_obj) 211s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 211s super().__init__(process_obj) 211s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 211s self._launch(process_obj) 211s ~~~~~~~~~~~~^^^^^^^^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch 211s self.sentinel, w = forkserver.connect_to_new_process(self._fds) 211s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process 211s connection.answer_challenge( 211s ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 211s wrapped_client, self._forkserver_authkey) 211s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 211s File "/usr/lib/python3.14/multiprocessing/connection.py", line 970, in answer_challenge 211s message = connection.recv_bytes(256) # reject large message 211s File "/usr/lib/python3.14/multiprocessing/connection.py", line 222, in recv_bytes 211s buf = self._recv_bytes(maxlength) 211s File "/usr/lib/python3.14/multiprocessing/connection.py", line 447, in _recv_bytes 211s buf = self._recv(4) 211s File "/usr/lib/python3.14/multiprocessing/connection.py", line 412, in _recv 211s chunk = read(handle, to_read) 211s ConnectionResetError: [Errno 104] Connection reset by peer 211s 211s 211s 211s Result: 211s 211s cat: Seqsero_result.txt: No such file or directory (os error 2) 211s autopkgtest [06:36:35]: test run-unit-test: -----------------------] 212s run-unit-test FAIL non-zero exit status 1 212s autopkgtest [06:36:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 212s autopkgtest [06:36:36]: @@@@@@@@@@@@@@@@@@@@ summary 212s run-unit-test FAIL non-zero exit status 1