0s autopkgtest [06:47:33]: starting date and time: 2025-10-29 06:47:33+0000
  0s autopkgtest [06:47:33]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [06:47:33]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.be8dehs3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hmmer --apt-upgrade sepp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=hmmer/3.4+dfsg-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-2.secgroup --name adt-resolute-arm64-sepp-20251029-064733-juju-7f2275-prod-proposed-migration-environment-15-dd2f8cc1-58dd-47ae-989c-815016f7c0f2 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-arm64-sepp-20251029-064733-juju-7f2275-prod-proposed-migration-environment-15-dd2f8cc1-58dd-47ae-989c-815016f7c0f2 from image adt/ubuntu-resolute-arm64-server-20251027.img (UUID 0c8717a7-1983-4858-8ad5-6d56cfcb3438)...
 59s autopkgtest [06:48:32]: testbed dpkg architecture: arm64
 60s autopkgtest [06:48:33]: testbed apt version: 3.1.8ubuntu1
 60s autopkgtest [06:48:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 60s autopkgtest [06:48:33]: testbed release detected to be: None
 61s autopkgtest [06:48:34]: updating testbed package index (apt update)
 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB]
 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 62s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 62s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 62s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB]
 62s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [203 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3645 kB]
 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B]
 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [270 kB]
 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [5404 B]
 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [44.3 kB]
 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B]
 63s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [2440 kB]
 63s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [58.0 kB]
 63s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [41.4 kB]
 63s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [536 B]
 65s Fetched 6873 kB in 2s (3567 kB/s)
 66s Reading package lists...
 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 67s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 67s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 67s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 68s Reading package lists...
 68s Reading package lists...
 68s Building dependency tree...
 68s Reading state information...
 68s Calculating upgrade...
 69s The following NEW packages will be installed:
 69s   util-linux-extra
 69s The following packages will be upgraded:
 69s   apt bsdextrautils bsdutils cloud-init cloud-init-base fdisk libapt-pkg7.0
 69s   libblkid1 libefiboot1t64 libefivar1t64 libfdisk1 liblastlog2-2 libmount1
 69s   libsmartcols1 libuuid1 login mount python3-blinker python3-cffi-backend
 69s   python3-lazr.uri util-linux uuid-runtime
 69s 22 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 69s Need to get 6061 kB of archives.
 69s After this operation, 1866 kB of additional disk space will be used.
 69s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fdisk arm64 2.41.2-4ubuntu1 [149 kB]
 69s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblkid1 arm64 2.41.2-4ubuntu1 [139 kB]
 70s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libmount1 arm64 2.41.2-4ubuntu1 [173 kB]
 70s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libsmartcols1 arm64 2.41.2-4ubuntu1 [96.2 kB]
 70s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 mount arm64 2.41.2-4ubuntu1 [145 kB]
 70s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 uuid-runtime arm64 2.41.2-4ubuntu1 [56.9 kB]
 70s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libuuid1 arm64 2.41.2-4ubuntu1 [45.3 kB]
 70s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libfdisk1 arm64 2.41.2-4ubuntu1 [173 kB]
 70s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 bsdutils arm64 1:2.41.2-4ubuntu1 [93.0 kB]
 70s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 util-linux arm64 2.41.2-4ubuntu1 [1082 kB]
 70s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 bsdextrautils arm64 2.41.2-4ubuntu1 [94.1 kB]
 70s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 login arm64 1:4.16.0-2+really2.41.2-4ubuntu1 [94.9 kB]
 70s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 liblastlog2-2 arm64 2.41.2-4ubuntu1 [35.7 kB]
 70s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.11 [1063 kB]
 70s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.11 [1402 kB]
 71s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cffi-backend arm64 2.0.0-2 [110 kB]
 71s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 cloud-init-base all 25.4~1gcb12e00e-0ubuntu1 [625 kB]
 71s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 cloud-init all 25.4~1gcb12e00e-0ubuntu1 [2114 B]
 71s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libefivar1t64 arm64 39-2 [57.3 kB]
 71s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libefiboot1t64 arm64 39-2 [40.1 kB]
 71s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-blinker all 1.9.0-2 [10.8 kB]
 71s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lazr.uri all 1.0.6-7 [13.8 kB]
 71s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 util-linux-extra arm64 2.41.2-4ubuntu1 [361 kB]
 71s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 71s Fetched 6061 kB in 2s (3271 kB/s)
 72s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83387 files and directories currently installed.)
 72s Preparing to unpack .../fdisk_2.41.2-4ubuntu1_arm64.deb ...
 72s Unpacking fdisk (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 72s Preparing to unpack .../libblkid1_2.41.2-4ubuntu1_arm64.deb ...
 72s Unpacking libblkid1:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 72s Setting up libblkid1:arm64 (2.41.2-4ubuntu1) ...
 72s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83387 files and directories currently installed.)
 72s Preparing to unpack .../libmount1_2.41.2-4ubuntu1_arm64.deb ...
 72s Unpacking libmount1:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 72s Setting up libmount1:arm64 (2.41.2-4ubuntu1) ...
 72s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83387 files and directories currently installed.)
 72s Preparing to unpack .../libsmartcols1_2.41.2-4ubuntu1_arm64.deb ...
 72s Unpacking libsmartcols1:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 72s Setting up libsmartcols1:arm64 (2.41.2-4ubuntu1) ...
 73s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83387 files and directories currently installed.)
 73s Preparing to unpack .../mount_2.41.2-4ubuntu1_arm64.deb ...
 73s Unpacking mount (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 73s Preparing to unpack .../uuid-runtime_2.41.2-4ubuntu1_arm64.deb ...
 73s Unpacking uuid-runtime (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 73s Preparing to unpack .../libuuid1_2.41.2-4ubuntu1_arm64.deb ...
 73s Unpacking libuuid1:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 73s Setting up libuuid1:arm64 (2.41.2-4ubuntu1) ...
 73s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83387 files and directories currently installed.)
 73s Preparing to unpack .../libfdisk1_2.41.2-4ubuntu1_arm64.deb ...
 73s Unpacking libfdisk1:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 73s Preparing to unpack .../bsdutils_1%3a2.41.2-4ubuntu1_arm64.deb ...
 73s Unpacking bsdutils (1:2.41.2-4ubuntu1) over (1:2.41-4ubuntu4) ...
 73s Setting up bsdutils (1:2.41.2-4ubuntu1) ...
 74s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83384 files and directories currently installed.)
 74s Preparing to unpack .../util-linux_2.41.2-4ubuntu1_arm64.deb ...
 74s Unpacking util-linux (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 74s Setting up util-linux (2.41.2-4ubuntu1) ...
 74s fstrim.service is a disabled or a static unit not running, not starting it.
 75s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83355 files and directories currently installed.)
 75s Preparing to unpack .../bsdextrautils_2.41.2-4ubuntu1_arm64.deb ...
 75s Unpacking bsdextrautils (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 75s Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-4ubuntu1_arm64.deb ...
 75s Unpacking login (1:4.16.0-2+really2.41.2-4ubuntu1) over (1:4.16.0-2+really2.41-4ubuntu4) ...
 75s Preparing to unpack .../liblastlog2-2_2.41.2-4ubuntu1_arm64.deb ...
 75s Unpacking liblastlog2-2:arm64 (2.41.2-4ubuntu1) over (2.41-4ubuntu4) ...
 75s Setting up liblastlog2-2:arm64 (2.41.2-4ubuntu1) ...
 75s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83350 files and directories currently installed.)
 75s Preparing to unpack .../0-libapt-pkg7.0_3.1.11_arm64.deb ...
 75s Unpacking libapt-pkg7.0:arm64 (3.1.11) over (3.1.8ubuntu1) ...
 75s Preparing to unpack .../1-apt_3.1.11_arm64.deb ...
 75s Unpacking apt (3.1.11) over (3.1.8ubuntu1) ...
 76s Preparing to unpack .../2-python3-cffi-backend_2.0.0-2_arm64.deb ...
 76s Unpacking python3-cffi-backend:arm64 (2.0.0-2) over (1.17.1-3build1) ...
 76s Preparing to unpack .../3-cloud-init-base_25.4~1gcb12e00e-0ubuntu1_all.deb ...
 76s Unpacking cloud-init-base (25.4~1gcb12e00e-0ubuntu1) over (25.3-0ubuntu1) ...
 76s Preparing to unpack .../4-cloud-init_25.4~1gcb12e00e-0ubuntu1_all.deb ...
 76s Unpacking cloud-init (25.4~1gcb12e00e-0ubuntu1) over (25.3-0ubuntu1) ...
 76s Preparing to unpack .../5-libefivar1t64_39-2_arm64.deb ...
 76s Unpacking libefivar1t64:arm64 (39-2) over (38-3.1build1) ...
 77s Preparing to unpack .../6-libefiboot1t64_39-2_arm64.deb ...
 77s Unpacking libefiboot1t64:arm64 (39-2) over (38-3.1build1) ...
 77s Preparing to unpack .../7-python3-blinker_1.9.0-2_all.deb ...
 77s Unpacking python3-blinker (1.9.0-2) over (1.9.0-1) ...
 77s Preparing to unpack .../8-python3-lazr.uri_1.0.6-7_all.deb ...
 77s Unpacking python3-lazr.uri (1.0.6-7) over (1.0.6-6) ...
 77s Selecting previously unselected package util-linux-extra.
 77s Preparing to unpack .../9-util-linux-extra_2.41.2-4ubuntu1_arm64.deb ...
 77s Unpacking util-linux-extra (2.41.2-4ubuntu1) ...
 77s Setting up bsdextrautils (2.41.2-4ubuntu1) ...
 77s Setting up libefivar1t64:arm64 (39-2) ...
 77s Setting up python3-lazr.uri (1.0.6-7) ...
 77s Setting up cloud-init-base (25.4~1gcb12e00e-0ubuntu1) ...
 78s Encountered debconf setting for cloud-init-base/datasources.
 79s Setting up libfdisk1:arm64 (2.41.2-4ubuntu1) ...
 79s Setting up mount (2.41.2-4ubuntu1) ...
 79s Setting up uuid-runtime (2.41.2-4ubuntu1) ...
 80s uuidd.service is a disabled or a static unit not running, not starting it.
 80s Setting up libefiboot1t64:arm64 (39-2) ...
 80s Setting up libapt-pkg7.0:arm64 (3.1.11) ...
 80s Setting up util-linux-extra (2.41.2-4ubuntu1) ...
 80s Setting up python3-cffi-backend:arm64 (2.0.0-2) ...
 80s Setting up login (1:4.16.0-2+really2.41.2-4ubuntu1) ...
 80s Setting up python3-blinker (1.9.0-2) ...
 81s Setting up apt (3.1.11) ...
 81s Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ...
 81s Setting up cloud-init (25.4~1gcb12e00e-0ubuntu1) ...
 81s Setting up fdisk (2.41.2-4ubuntu1) ...
 81s Processing triggers for rsyslog (8.2504.0-1ubuntu2) ...
 81s Processing triggers for man-db (2.13.1-1) ...
 84s Processing triggers for libc-bin (2.42-0ubuntu3) ...
 84s autopkgtest [06:48:57]: upgrading testbed (apt dist-upgrade and autopurge)
 85s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 87s Calculating upgrade...
 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 89s Solving dependencies...
 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 90s autopkgtest [06:49:03]: rebooting testbed after setup commands that affected boot
119s autopkgtest [06:49:32]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025
121s autopkgtest [06:49:34]: @@@@@@@@@@@@@@@@@@@@ apt-source sepp
124s Get:1 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (dsc) [2129 B]
124s Get:2 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (tar) [4312 kB]
124s Get:3 http://ftpmaster.internal/ubuntu resolute/universe sepp 4.5.5+dfsg-1 (diff) [12.5 kB]
125s gpgv: Signature made Mon Sep 30 18:54:31 2024 UTC
125s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
125s gpgv: Can't check signature: No public key
125s dpkg-source: warning: cannot verify inline signature for ./sepp_4.5.5+dfsg-1.dsc: no acceptable signature found
125s autopkgtest [06:49:38]: testing package sepp version 4.5.5+dfsg-1
125s autopkgtest [06:49:38]: build not needed
127s autopkgtest [06:49:40]: test run-build-tests: preparing testbed
127s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s Solving dependencies...
128s The following NEW packages will be installed:
128s   adwaita-icon-theme at-spi2-common ca-certificates-java
128s   dconf-gsettings-backend dconf-service default-jre default-jre-headless
128s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
128s   gtk-update-icon-cache hicolor-icon-theme hmmer java-common junit4
128s   libapache-pom-java libasound2-data libasound2t64 libatk-bridge2.0-0t64
128s   libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data
128s   libavahi-common3 libcairo-gobject2 libcairo2 libcolord2
128s   libcommons-beanutils-java libcommons-collections3-java
128s   libcommons-collections4-java libcommons-lang-java libcommons-lang3-java
128s   libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1
128s   libdconf1 libdeflate0 libdivsufsort3 libdrm-amdgpu1 libepoxy0
128s   libezmorph-java libfontconfig1 libgbm1 libgdk-pixbuf-2.0-0
128s   libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglvnd0
128s   libglx-mesa0 libglx0 libgomp1 libgoogle-gson-java libgraphite2-3 libgsl28
128s   libgslcblas0 libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz0b
128s   libjaxen-java libjbig0 libjenkins-json-java libjpeg-turbo8 libjpeg8
128s   libjson-java liblcms2-2 liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7
128s   libncbi-vdb3 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0
128s   libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libsharpyuv0 libslf4j-java
128s   libthai-data libthai0 libtiff6 libvulkan1 libwayland-client0
128s   libwayland-cursor0 libwayland-egl1 libwebp7 libx11-xcb1 libxcb-dri3-0
128s   libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0
128s   libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1
128s   libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
128s   libxml-commons-resolver1.1-java libxom-java libxrandr2 libxrender1
128s   libxshmfence1 libxtst6 libxxf86vm1 mesa-libgallium ncbi-blast+ ncbi-data
128s   ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless pplacer
128s   python3-dendropy sepp x11-common
129s 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded.
129s Need to get 107 MB of archives.
129s After this operation, 458 MB of additional disk space will be used.
129s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B]
129s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB]
129s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
129s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
129s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
129s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
129s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
129s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
130s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB]
130s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf-2.0-0 arm64 2.44.4+dfsg-1 [149 kB]
130s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 gtk-update-icon-cache arm64 4.20.2+ds-1 [54.4 kB]
130s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 hicolor-icon-theme all 0.18-2 [13.3 kB]
130s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 adwaita-icon-theme all 49.0-1 [581 kB]
130s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 at-spi2-common all 2.57.1-1 [9432 B]
130s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 ca-certificates-java all 20240118 [11.6 kB]
130s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libdconf1 arm64 0.49.0-1 [40.6 kB]
130s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-service arm64 0.49.0-1 [27.1 kB]
130s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-gsettings-backend arm64 0.49.0-1 [21.9 kB]
130s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 java-common all 0.76 [6852 B]
130s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
130s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libnspr4 arm64 2:4.36-1ubuntu2 [115 kB]
130s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libnss3 arm64 2:3.114-1 [1453 kB]
130s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcsclite1 arm64 2.3.3-1 [24.7 kB]
130s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre-headless arm64 21.0.9+10-1 [45.9 MB]
132s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre-headless arm64 2:1.21-76 [3176 B]
132s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk1.0-0t64 arm64 2.57.1-1 [55.5 kB]
132s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
132s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libatspi2.0-0t64 arm64 2.57.1-1 [84.7 kB]
132s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk-bridge2.0-0t64 arm64 2.57.1-1 [66.0 kB]
132s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
132s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
132s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB]
132s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB]
132s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
132s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB]
132s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B]
132s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
132s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB]
132s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo-gobject2 arm64 1.18.4-1build1 [128 kB]
132s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolord2 arm64 1.4.7-3build1 [148 kB]
132s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common-data arm64 0.8-16ubuntu3 [31.1 kB]
132s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common3 arm64 0.8-16ubuntu3 [24.5 kB]
132s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-client3 arm64 0.8-16ubuntu3 [28.4 kB]
132s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libcups2t64 arm64 2.4.12-0ubuntu3 [269 kB]
132s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libepoxy0 arm64 1.5.10-2 [236 kB]
132s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
132s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB]
132s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB]
132s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
132s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.13-4 [19.1 kB]
132s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
132s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-2 [237 kB]
132s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [50.2 kB]
132s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [27.7 kB]
132s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-client0 arm64 1.24.0-1build1 [28.9 kB]
132s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-cursor0 arm64 1.24.0-1build1 [11.1 kB]
132s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-egl1 arm64 1.24.0-1build1 [6500 B]
132s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcomposite1 arm64 1:0.4.6-1 [6626 B]
132s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB]
132s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcursor1 arm64 1:1.2.3-1 [22.2 kB]
132s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxdamage1 arm64 1:1.1.6-1build1 [6236 B]
132s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libxinerama1 arm64 2:1.1.4-3build1 [6394 B]
132s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrandr2 arm64 2:1.5.4-1 [19.6 kB]
132s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB]
132s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-0t64 arm64 3.24.50-1ubuntu2 [3229 kB]
132s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB]
132s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B]
132s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B]
132s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB]
132s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B]
132s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB]
132s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B]
132s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.127-1ubuntu1 [23.9 kB]
132s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB]
132s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB]
132s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B]
132s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB]
132s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB]
132s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB]
132s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB]
132s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB]
132s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB]
132s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB]
132s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2-data all 1.2.14-1ubuntu1 [21.2 kB]
132s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2t64 arm64 1.2.14-1ubuntu1 [394 kB]
132s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu2 [36.1 kB]
133s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
133s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtst6 arm64 2:1.2.5-1 [13.2 kB]
133s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre arm64 21.0.9+10-1 [224 kB]
133s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre arm64 2:1.21-76 [918 B]
133s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhamcrest-java all 2.2-2 [117 kB]
133s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 junit4 all 4.13.2-5 [348 kB]
133s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libapache-pom-java all 33-2 [5874 B]
133s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-collections3-java all 3.2.2-3 [526 kB]
133s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-parent-java all 56-1 [10.7 kB]
133s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
133s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-beanutils-java all 1.10.1-1.1 [224 kB]
133s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-collections4-java all 4.4-2 [670 kB]
133s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-lang-java all 2.6-11 [271 kB]
133s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-lang3-java all 3.17.0-1 [603 kB]
133s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdivsufsort3 arm64 2.0.1-6 [41.0 kB]
133s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 libezmorph-java all 1.0.6-4 [76.0 kB]
133s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB]
133s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB]
133s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgslcblas0 arm64 2.8+dfsg-5.1ubuntu1 [96.3 kB]
133s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgsl28 arm64 2.8+dfsg-5.1ubuntu1 [1029 kB]
134s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjaxen-java all 1.1.6-5 [213 kB]
134s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjenkins-json-java all 2.4-jenkins-8+dfsg-1 [209 kB]
134s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 libslf4j-java all 1.7.32-2 [141 kB]
135s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB]
135s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB]
135s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB]
135s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxom-java all 1.3.9-1 [174 kB]
135s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjson-java all 3.1.0+dfsg-2 [141 kB]
135s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.2-3ubuntu1 [258 kB]
135s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.2-3ubuntu1 [35.7 kB]
135s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.2-3ubuntu1 [122 kB]
135s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB]
135s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1259 kB]
135s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB]
135s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB]
137s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 pplacer arm64 1.1~alpha19-8build1 [4523 kB]
137s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-dendropy all 4.6.1-2 [278 kB]
137s Get:124 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 hmmer arm64 3.4+dfsg-3 [1091 kB]
137s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 sepp arm64 4.5.5+dfsg-1 [164 kB]
138s Fetched 107 MB in 9s (12.5 MB/s)
138s Selecting previously unselected package libgdk-pixbuf2.0-common.
138s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83457 files and directories currently installed.)
138s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ...
138s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ...
138s Selecting previously unselected package libjpeg-turbo8:arm64.
138s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ...
138s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
138s Selecting previously unselected package libjpeg8:arm64.
138s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ...
138s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
138s Selecting previously unselected package libdeflate0:arm64.
138s Preparing to unpack .../003-libdeflate0_1.23-2_arm64.deb ...
138s Unpacking libdeflate0:arm64 (1.23-2) ...
138s Selecting previously unselected package libjbig0:arm64.
138s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
138s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
138s Selecting previously unselected package liblerc4:arm64.
138s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
138s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
138s Selecting previously unselected package libsharpyuv0:arm64.
138s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_arm64.deb ...
138s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
138s Selecting previously unselected package libwebp7:arm64.
138s Preparing to unpack .../007-libwebp7_1.5.0-0.1_arm64.deb ...
138s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
138s Selecting previously unselected package libtiff6:arm64.
138s Preparing to unpack .../008-libtiff6_4.7.0-3ubuntu3_arm64.deb ...
138s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ...
138s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64.
138s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_arm64.deb ...
138s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ...
138s Selecting previously unselected package gtk-update-icon-cache.
138s Preparing to unpack .../010-gtk-update-icon-cache_4.20.2+ds-1_arm64.deb ...
138s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
138s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
138s Unpacking gtk-update-icon-cache (4.20.2+ds-1) ...
138s Selecting previously unselected package hicolor-icon-theme.
138s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ...
138s Unpacking hicolor-icon-theme (0.18-2) ...
138s Selecting previously unselected package adwaita-icon-theme.
138s Preparing to unpack .../012-adwaita-icon-theme_49.0-1_all.deb ...
138s Unpacking adwaita-icon-theme (49.0-1) ...
138s Selecting previously unselected package at-spi2-common.
139s Preparing to unpack .../013-at-spi2-common_2.57.1-1_all.deb ...
139s Unpacking at-spi2-common (2.57.1-1) ...
139s Selecting previously unselected package ca-certificates-java.
139s Preparing to unpack .../014-ca-certificates-java_20240118_all.deb ...
139s Unpacking ca-certificates-java (20240118) ...
139s Selecting previously unselected package libdconf1:arm64.
139s Preparing to unpack .../015-libdconf1_0.49.0-1_arm64.deb ...
139s Unpacking libdconf1:arm64 (0.49.0-1) ...
139s Selecting previously unselected package dconf-service.
139s Preparing to unpack .../016-dconf-service_0.49.0-1_arm64.deb ...
139s Unpacking dconf-service (0.49.0-1) ...
139s Selecting previously unselected package dconf-gsettings-backend:arm64.
139s Preparing to unpack .../017-dconf-gsettings-backend_0.49.0-1_arm64.deb ...
139s Unpacking dconf-gsettings-backend:arm64 (0.49.0-1) ...
139s Selecting previously unselected package java-common.
139s Preparing to unpack .../018-java-common_0.76_all.deb ...
139s Unpacking java-common (0.76) ...
139s Selecting previously unselected package liblcms2-2:arm64.
139s Preparing to unpack .../019-liblcms2-2_2.16-2_arm64.deb ...
139s Unpacking liblcms2-2:arm64 (2.16-2) ...
139s Selecting previously unselected package libnspr4:arm64.
139s Preparing to unpack .../020-libnspr4_2%3a4.36-1ubuntu2_arm64.deb ...
139s Unpacking libnspr4:arm64 (2:4.36-1ubuntu2) ...
139s Selecting previously unselected package libnss3:arm64.
139s Preparing to unpack .../021-libnss3_2%3a3.114-1_arm64.deb ...
139s Unpacking libnss3:arm64 (2:3.114-1) ...
139s Selecting previously unselected package libpcsclite1:arm64.
139s Preparing to unpack .../022-libpcsclite1_2.3.3-1_arm64.deb ...
139s Unpacking libpcsclite1:arm64 (2.3.3-1) ...
139s Selecting previously unselected package openjdk-21-jre-headless:arm64.
139s Preparing to unpack .../023-openjdk-21-jre-headless_21.0.9+10-1_arm64.deb ...
139s Unpacking openjdk-21-jre-headless:arm64 (21.0.9+10-1) ...
140s Selecting previously unselected package default-jre-headless.
140s Preparing to unpack .../024-default-jre-headless_2%3a1.21-76_arm64.deb ...
140s Unpacking default-jre-headless (2:1.21-76) ...
140s Selecting previously unselected package libatk1.0-0t64:arm64.
140s Preparing to unpack .../025-libatk1.0-0t64_2.57.1-1_arm64.deb ...
140s Unpacking libatk1.0-0t64:arm64 (2.57.1-1) ...
140s Selecting previously unselected package libxi6:arm64.
140s Preparing to unpack .../026-libxi6_2%3a1.8.2-1_arm64.deb ...
140s Unpacking libxi6:arm64 (2:1.8.2-1) ...
140s Selecting previously unselected package libatspi2.0-0t64:arm64.
140s Preparing to unpack .../027-libatspi2.0-0t64_2.57.1-1_arm64.deb ...
140s Unpacking libatspi2.0-0t64:arm64 (2.57.1-1) ...
140s Selecting previously unselected package libatk-bridge2.0-0t64:arm64.
140s Preparing to unpack .../028-libatk-bridge2.0-0t64_2.57.1-1_arm64.deb ...
140s Unpacking libatk-bridge2.0-0t64:arm64 (2.57.1-1) ...
140s Selecting previously unselected package fonts-dejavu-mono.
140s Preparing to unpack .../029-fonts-dejavu-mono_2.37-8_all.deb ...
140s Unpacking fonts-dejavu-mono (2.37-8) ...
140s Selecting previously unselected package fonts-dejavu-core.
140s Preparing to unpack .../030-fonts-dejavu-core_2.37-8_all.deb ...
140s Unpacking fonts-dejavu-core (2.37-8) ...
140s Selecting previously unselected package fontconfig-config.
140s Preparing to unpack .../031-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ...
141s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ...
141s Selecting previously unselected package libfontconfig1:arm64.
141s Preparing to unpack .../032-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ...
141s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ...
141s Selecting previously unselected package libpixman-1-0:arm64.
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141s Selecting previously unselected package libcairo2:arm64.
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141s Selecting previously unselected package libdatrie1:arm64.
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142s Selecting previously unselected package libpango-1.0-0:arm64.
142s Preparing to unpack .../051-libpango-1.0-0_1.56.3-2_arm64.deb ...
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142s Selecting previously unselected package libpangoft2-1.0-0:arm64.
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142s Selecting previously unselected package libpangocairo-1.0-0:arm64.
142s Preparing to unpack .../053-libpangocairo-1.0-0_1.56.3-2_arm64.deb ...
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142s Selecting previously unselected package libwayland-client0:arm64.
142s Preparing to unpack .../054-libwayland-client0_1.24.0-1build1_arm64.deb ...
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142s Selecting previously unselected package libwayland-cursor0:arm64.
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142s Selecting previously unselected package libwayland-egl1:arm64.
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142s Selecting previously unselected package libxcomposite1:arm64.
142s Preparing to unpack .../057-libxcomposite1_1%3a0.4.6-1_arm64.deb ...
142s Unpacking libxcomposite1:arm64 (1:0.4.6-1) ...
142s Selecting previously unselected package libxfixes3:arm64.
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142s Selecting previously unselected package libxcursor1:arm64.
142s Preparing to unpack .../059-libxcursor1_1%3a1.2.3-1_arm64.deb ...
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142s Selecting previously unselected package libxdamage1:arm64.
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142s Selecting previously unselected package libxinerama1:arm64.
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142s Selecting previously unselected package libxrandr2:arm64.
142s Preparing to unpack .../062-libxrandr2_2%3a1.5.4-1_arm64.deb ...
142s Unpacking libxrandr2:arm64 (2:1.5.4-1) ...
142s Selecting previously unselected package libgtk-3-common.
142s Preparing to unpack .../063-libgtk-3-common_3.24.50-1ubuntu2_all.deb ...
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142s Selecting previously unselected package libgtk-3-0t64:arm64.
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142s Unpacking libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ...
142s Selecting previously unselected package libglvnd0:arm64.
142s Preparing to unpack .../065-libglvnd0_1.7.0-1build2_arm64.deb ...
142s Unpacking libglvnd0:arm64 (1.7.0-1build2) ...
142s Selecting previously unselected package libx11-xcb1:arm64.
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142s Selecting previously unselected package libxcb-dri3-0:arm64.
142s Preparing to unpack .../067-libxcb-dri3-0_1.17.0-2build1_arm64.deb ...
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142s Selecting previously unselected package libxcb-glx0:arm64.
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142s Selecting previously unselected package libxcb-present0:arm64.
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142s Selecting previously unselected package libxcb-xfixes0:arm64.
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142s Selecting previously unselected package libxxf86vm1:arm64.
142s Preparing to unpack .../071-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ...
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143s Selecting previously unselected package libdrm-amdgpu1:arm64.
143s Preparing to unpack .../072-libdrm-amdgpu1_2.4.127-1ubuntu1_arm64.deb ...
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143s Selecting previously unselected package libxcb-randr0:arm64.
143s Preparing to unpack .../073-libxcb-randr0_1.17.0-2build1_arm64.deb ...
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143s Selecting previously unselected package libxcb-sync1:arm64.
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143s Selecting previously unselected package libxshmfence1:arm64.
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143s Selecting previously unselected package mesa-libgallium:arm64.
143s Preparing to unpack .../076-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ...
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143s Selecting previously unselected package libgbm1:arm64.
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143s Selecting previously unselected package libvulkan1:arm64.
143s Preparing to unpack .../078-libvulkan1_1.4.321.0-1_arm64.deb ...
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143s Selecting previously unselected package libgl1-mesa-dri:arm64.
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143s Selecting previously unselected package libglx-mesa0:arm64.
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143s Selecting previously unselected package libglx0:arm64.
143s Preparing to unpack .../081-libglx0_1.7.0-1build2_arm64.deb ...
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143s Selecting previously unselected package libasound2-data.
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143s Selecting previously unselected package libgif7:arm64.
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143s Selecting previously unselected package libxtst6:arm64.
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144s Selecting previously unselected package libgomp1:arm64.
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145s Selecting previously unselected package libmbedcrypto16:arm64.
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146s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
146s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ...
146s Setting up liblcms2-2:arm64 (2.16-2) ...
146s Setting up ncbi-data (6.1.20170106+dfsg2-6) ...
146s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
146s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
146s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ...
146s Setting up libslf4j-java (1.7.32-2) ...
146s Setting up libxdamage1:arm64 (1:1.1.6-1build1) ...
146s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ...
146s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
146s Setting up hicolor-icon-theme (0.18-2) ...
146s Setting up libxi6:arm64 (2:1.8.2-1) ...
146s Setting up java-common (0.76) ...
146s Setting up libxrender1:arm64 (1:0.9.12-1) ...
146s Setting up libdatrie1:arm64 (0.2.13-4) ...
146s Setting up libgslcblas0:arm64 (2.8+dfsg-5.1ubuntu1) ...
146s Setting up libxcb-render0:arm64 (1.17.0-2build1) ...
146s Setting up libglvnd0:arm64 (1.7.0-1build2) ...
146s Setting up libgoogle-gson-java (2.10.1-1) ...
146s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ...
146s Setting up libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ...
146s Setting up x11-common (1:7.7+24ubuntu1) ...
146s Setting up libdeflate0:arm64 (1.23-2) ...
146s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ...
146s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ...
146s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
146s Setting up libcolord2:arm64 (1.4.7-3build1) ...
146s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ...
146s Setting up libxcb-present0:arm64 (1.17.0-2build1) ...
146s Setting up libdconf1:arm64 (0.49.0-1) ...
146s Setting up libcommons-collections3-java (3.2.2-3) ...
146s Setting up libasound2-data (1.2.14-1ubuntu1) ...
146s Setting up libasound2t64:arm64 (1.2.14-1ubuntu1) ...
146s Setting up libjaxen-java (1.1.6-5) ...
146s Setting up libepoxy0:arm64 (1.5.10-2) ...
146s Setting up libnspr4:arm64 (2:4.36-1ubuntu2) ...
146s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ...
146s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ...
146s Setting up libapache-pom-java (33-2) ...
146s Setting up libavahi-common-data:arm64 (0.8-16ubuntu3) ...
146s Setting up libatspi2.0-0t64:arm64 (2.57.1-1) ...
146s Setting up libxinerama1:arm64 (2:1.1.4-3build1) ...
146s Setting up fonts-dejavu-mono (2.37-8) ...
146s Setting up libxml-commons-resolver1.1-java (1.2-11) ...
146s Setting up libxrandr2:arm64 (2:1.5.4-1) ...
146s Setting up fonts-dejavu-core (2.37-8) ...
146s Setting up libpcsclite1:arm64 (2.3.3-1) ...
146s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
146s Setting up libhamcrest-java (2.2-2) ...
146s Setting up libvulkan1:arm64 (1.4.321.0-1) ...
146s Setting up libwebp7:arm64 (1.5.0-0.1) ...
146s Setting up libgif7:arm64 (5.2.2-1ubuntu2) ...
146s Setting up libxshmfence1:arm64 (1.3.3-1) ...
146s Setting up at-spi2-common (2.57.1-1) ...
146s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ...
146s Setting up libxml-commons-external-java (1.4.01-6) ...
146s Setting up libharfbuzz0b:arm64 (12.1.0-1) ...
146s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ...
146s Setting up libthai-data (0.1.29-2build1) ...
146s Setting up libwayland-egl1:arm64 (1.24.0-1build1) ...
146s Setting up libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ...
146s Setting up ca-certificates-java (20240118) ...
146s No JRE found. Skipping Java certificates setup.
146s Setting up libxerces2-java (2.12.2-1) ...
146s Setting up libgsl28:arm64 (2.8+dfsg-5.1ubuntu1) ...
146s Setting up libdivsufsort3:arm64 (2.0.1-6) ...
146s Setting up python3-dendropy (4.6.1-2) ...
147s Setting up libezmorph-java (1.0.6-4) ...
147s Setting up libxcomposite1:arm64 (1:0.4.6-1) ...
147s Setting up libdrm-amdgpu1:arm64 (2.4.127-1ubuntu1) ...
147s Setting up libwayland-client0:arm64 (1.24.0-1build1) ...
147s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
147s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ...
147s Setting up libatk1.0-0t64:arm64 (2.57.1-1) ...
147s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ...
147s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
147s Setting up libxtst6:arm64 (2:1.2.5-1) ...
147s Setting up libxcursor1:arm64 (1:1.2.3-1) ...
147s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ...
147s Setting up libcommons-parent-java (56-1) ...
147s Setting up libavahi-common3:arm64 (0.8-16ubuntu3) ...
147s Setting up pplacer (1.1~alpha19-8build1) ...
147s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
147s Setting up dconf-service (0.49.0-1) ...
147s Setting up libnss3:arm64 (2:3.114-1) ...
147s Setting up libxom-java (1.3.9-1) ...
147s Setting up libcommons-lang-java (2.6-11) ...
147s Setting up libthai0:arm64 (0.1.29-2build1) ...
147s Setting up libmbedx509-7:arm64 (3.6.2-3ubuntu1) ...
147s Setting up libcommons-collections4-java (4.4-2) ...
147s Setting up libcommons-lang3-java (3.17.0-1) ...
147s Setting up libmbedtls21:arm64 (3.6.2-3ubuntu1) ...
147s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ...
147s Setting up libwayland-cursor0:arm64 (1.24.0-1build1) ...
147s Setting up hmmer (3.4+dfsg-3) ...
147s Setting up libcommons-beanutils-java (1.10.1-1.1) ...
147s Setting up libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ...
147s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ...
147s Setting up libjenkins-json-java (2.4-jenkins-8+dfsg-1) ...
147s Setting up libavahi-client3:arm64 (0.8-16ubuntu3) ...
147s Setting up libatk-bridge2.0-0t64:arm64 (2.57.1-1) ...
147s Setting up gtk-update-icon-cache (4.20.2+ds-1) ...
147s Setting up fontconfig (2.15.0-2.3ubuntu1) ...
149s Regenerating fonts cache... done.
149s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ...
149s Setting up openjdk-21-jre-headless:arm64 (21.0.9+10-1) ...
149s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode
149s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
149s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
149s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
149s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
149s Setting up libglx0:arm64 (1.7.0-1build2) ...
149s Setting up dconf-gsettings-backend:arm64 (0.49.0-1) ...
149s Setting up libpango-1.0-0:arm64 (1.56.3-2) ...
149s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ...
149s Setting up libcairo2:arm64 (1.18.4-1build1) ...
149s Setting up ncbi-blast+ (2.16.0+ds-7) ...
149s Setting up libgl1:arm64 (1.7.0-1build2) ...
149s Setting up adwaita-icon-theme (49.0-1) ...
149s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
149s Setting up libcairo-gobject2:arm64 (1.18.4-1build1) ...
149s Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ...
149s Setting up libcups2t64:arm64 (2.4.12-0ubuntu3) ...
149s Setting up libgtk-3-common (3.24.50-1ubuntu2) ...
149s Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ...
149s Processing triggers for libc-bin (2.42-0ubuntu3) ...
149s Processing triggers for man-db (2.13.1-1) ...
151s Processing triggers for libglib2.0-0t64:arm64 (2.86.1-1) ...
151s Setting up libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ...
151s Processing triggers for ca-certificates-java (20240118) ...
151s Adding debian:ACCVRAIZ1.pem
151s Adding debian:AC_RAIZ_FNMT-RCM.pem
152s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
152s Adding debian:ANF_Secure_Server_Root_CA.pem
152s Adding debian:Actalis_Authentication_Root_CA.pem
152s Adding debian:AffirmTrust_Commercial.pem
152s Adding debian:AffirmTrust_Networking.pem
152s Adding debian:AffirmTrust_Premium.pem
152s Adding debian:AffirmTrust_Premium_ECC.pem
152s Adding debian:Amazon_Root_CA_1.pem
152s Adding debian:Amazon_Root_CA_2.pem
152s Adding debian:Amazon_Root_CA_3.pem
152s Adding debian:Amazon_Root_CA_4.pem
152s Adding debian:Atos_TrustedRoot_2011.pem
152s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
152s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
152s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
152s Adding debian:BJCA_Global_Root_CA1.pem
152s Adding debian:BJCA_Global_Root_CA2.pem
152s Adding debian:Baltimore_CyberTrust_Root.pem
152s Adding debian:Buypass_Class_2_Root_CA.pem
152s Adding debian:Buypass_Class_3_Root_CA.pem
152s Adding debian:CA_Disig_Root_R2.pem
152s Adding debian:CFCA_EV_ROOT.pem
152s Adding debian:COMODO_Certification_Authority.pem
152s Adding debian:COMODO_ECC_Certification_Authority.pem
152s Adding debian:COMODO_RSA_Certification_Authority.pem
152s Adding debian:Certainly_Root_E1.pem
152s Adding debian:Certainly_Root_R1.pem
152s Adding debian:Certigna.pem
152s Adding debian:Certigna_Root_CA.pem
152s Adding debian:Certum_EC-384_CA.pem
152s Adding debian:Certum_Trusted_Network_CA.pem
152s Adding debian:Certum_Trusted_Network_CA_2.pem
152s Adding debian:Certum_Trusted_Root_CA.pem
152s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
152s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
152s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
152s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
152s Adding debian:Comodo_AAA_Services_root.pem
152s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
152s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem
152s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
152s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem
152s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
152s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
152s Adding debian:DigiCert_Assured_ID_Root_CA.pem
152s Adding debian:DigiCert_Assured_ID_Root_G2.pem
152s Adding debian:DigiCert_Assured_ID_Root_G3.pem
152s Adding debian:DigiCert_Global_Root_CA.pem
152s Adding debian:DigiCert_Global_Root_G2.pem
152s Adding debian:DigiCert_Global_Root_G3.pem
152s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
152s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
152s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
152s Adding debian:DigiCert_Trusted_Root_G4.pem
152s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
152s Adding debian:Entrust_Root_Certification_Authority.pem
152s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
152s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
152s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
152s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
152s Adding debian:GLOBALTRUST_2020.pem
152s Adding debian:GTS_Root_R1.pem
152s Adding debian:GTS_Root_R2.pem
152s Adding debian:GTS_Root_R3.pem
152s Adding debian:GTS_Root_R4.pem
152s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
152s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
152s Adding debian:GlobalSign_Root_CA.pem
152s Adding debian:GlobalSign_Root_CA_-_R3.pem
152s Adding debian:GlobalSign_Root_CA_-_R6.pem
152s Adding debian:GlobalSign_Root_E46.pem
152s Adding debian:GlobalSign_Root_R46.pem
152s Adding debian:Go_Daddy_Class_2_CA.pem
152s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
152s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
152s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
152s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
152s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
152s Adding debian:HiPKI_Root_CA_-_G1.pem
152s Adding debian:Hongkong_Post_Root_CA_3.pem
152s Adding debian:ISRG_Root_X1.pem
152s Adding debian:ISRG_Root_X2.pem
152s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
152s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
152s Adding debian:Izenpe.com.pem
152s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
152s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
152s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
152s Adding debian:NAVER_Global_Root_Certification_Authority.pem
152s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
152s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
152s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
152s Adding debian:QuoVadis_Root_CA_1_G3.pem
152s Adding debian:QuoVadis_Root_CA_2.pem
152s Adding debian:QuoVadis_Root_CA_2_G3.pem
152s Adding debian:QuoVadis_Root_CA_3.pem
152s Adding debian:QuoVadis_Root_CA_3_G3.pem
152s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
152s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
152s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
152s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
152s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
152s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
152s Adding debian:SZAFIR_ROOT_CA2.pem
152s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
152s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
152s Adding debian:SecureSign_Root_CA12.pem
152s Adding debian:SecureSign_Root_CA14.pem
152s Adding debian:SecureSign_Root_CA15.pem
152s Adding debian:SecureTrust_CA.pem
152s Adding debian:Secure_Global_CA.pem
152s Adding debian:Security_Communication_ECC_RootCA1.pem
152s Adding debian:Security_Communication_RootCA2.pem
152s Adding debian:Starfield_Class_2_CA.pem
152s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
152s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
152s Adding debian:SwissSign_Gold_CA_-_G2.pem
152s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
152s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
152s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
152s Adding debian:TWCA_CYBER_Root_CA.pem
152s Adding debian:TWCA_Global_Root_CA.pem
152s Adding debian:TWCA_Root_Certification_Authority.pem
152s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
152s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
152s Adding debian:TeliaSonera_Root_CA_v1.pem
152s Adding debian:Telia_Root_CA_v2.pem
152s Adding debian:TrustAsia_Global_Root_CA_G3.pem
152s Adding debian:TrustAsia_Global_Root_CA_G4.pem
152s Adding debian:Trustwave_Global_Certification_Authority.pem
152s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
152s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
152s Adding debian:TunTrust_Root_CA.pem
152s Adding debian:UCA_Extended_Validation_Root.pem
152s Adding debian:UCA_Global_G2_Root.pem
152s Adding debian:USERTrust_ECC_Certification_Authority.pem
152s Adding debian:USERTrust_RSA_Certification_Authority.pem
152s Adding debian:XRamp_Global_CA_Root.pem
152s Adding debian:certSIGN_ROOT_CA.pem
152s Adding debian:certSIGN_Root_CA_G2.pem
152s Adding debian:e-Szigno_Root_CA_2017.pem
152s Adding debian:ePKI_Root_Certification_Authority.pem
152s Adding debian:emSign_ECC_Root_CA_-_C3.pem
152s Adding debian:emSign_ECC_Root_CA_-_G3.pem
152s Adding debian:emSign_Root_CA_-_C1.pem
152s Adding debian:emSign_Root_CA_-_G1.pem
152s Adding debian:vTrus_ECC_Root_CA.pem
152s Adding debian:vTrus_Root_CA.pem
152s done.
152s Setting up junit4 (4.13.2-5) ...
152s Setting up default-jre-headless (2:1.21-76) ...
152s Setting up openjdk-21-jre:arm64 (21.0.9+10-1) ...
152s Setting up libjson-java (3.1.0+dfsg-2) ...
152s Setting up default-jre (2:1.21-76) ...
152s Setting up sepp (4.5.5+dfsg-1) ...
152s Processing triggers for libc-bin (2.42-0ubuntu3) ...
153s autopkgtest [06:50:06]: test run-build-tests: [-----------------------
154s testAlignmentReadFasta (testAlignment.Test.testAlignmentReadFasta) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:38: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
154s   alg.read_filepath(get_data_path("mock/pyrg/sate.fasta"))
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s ok
154s testExtendedAlignment (testAlignment.Test.testExtendedAlignment) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:107: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.fasta' mode='r' encoding='UTF-8'>
154s   alg.read_filepath(get_data_path("simulated/test.fasta"))
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:112: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
154s   frg.read_filepath(get_data_path("simulated/test.fas"))
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:130: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzlroz19w' mode='r' encoding='UTF-8'>
154s   tmp = MutableAlignment().read_filepath(self.fp_dummy1)
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:133: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5pxbycxy' mode='r' encoding='UTF-8'>
154s   tmp = MutableAlignment().read_filepath(self.fp_dummy2)
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzlroz19w' mode='r' encoding='UTF-8'>
154s   self.read_filepath(base_alignment, "FASTA")
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/cp1.extended.sto' mode='r' encoding='UTF-8'>
154s   ext.read_extended_alignment(path)
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s [06:50:07] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/cp1.extended.sto) into base alignment (/tmp/tmpzlroz19w).
154s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5pxbycxy' mode='r' encoding='UTF-8'>
154s   self.read_filepath(base_alignment, "FASTA")
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/cp2.extended.sto' mode='r' encoding='UTF-8'>
154s   ext.read_extended_alignment(path)
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s [06:50:07] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/cp2.extended.sto) into base alignment (/tmp/tmp5pxbycxy).
154s ok
154s testReadOnlySubAlignment (testAlignment.Test.testReadOnlySubAlignment) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testAlignment.py:46: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
154s   alg.read_filepath(get_data_path("mock/pyrg/sate.fasta"))
154s ResourceWarning: Enable tracemalloc to get the object allocation traceback
154s ok
154s test_make_checkpoints (testCheckPoint.Test.test_make_checkpoints) ... [06:50:07] config.py (line 371):     INFO: Seed number: 297834
154s [06:50:07] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
154s [06:50:07] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
155s [06:50:07] algorithm.py (line 157):     INFO: All options: Namespace(pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False', elim='10000', filters='True'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), exhaustive=Namespace(strategy='centroid', minsubsetsize='2', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), alignment_size=None, placement_size=20, max_chunk_size=20000, distance=1, maxDiam=None, decomp_strategy='normal', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpp_neelh4', config_file=None, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c2397750>, checkpoint_interval=5, seed=297834)
155s [06:50:07] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
155s [06:50:07] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
155s [06:50:07] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
155s [06:50:08] algorithm.py (line 298):     INFO: Tree has 508 leaves
155s [06:50:08] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 20 placement: 20
155s [06:50:08] exhaustive.py (line 352):     INFO: Breaking into 33 placement subsets.
155s [06:50:08] exhaustive.py (line 399):     INFO: Breaking into 33 alignment subsets.
155s [06:50:08] filemgr.py (line 129):     INFO: Root temp directory built: /tmp/sepp/output.0ndgl6g0
155s [06:50:08] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
155s [06:50:08] checkpointing.py (line 121):     INFO: Checkpoint every 5 seconds
155s [06:50:08] checkpointing.py (line 49):     INFO: Checkpoint is being updated: /tmp/sepp/output.0ndgl6g0/checkpoints/dump8vvur70s
155s /usr/lib/python3/dist-packages/sepp/checkpointing.py:50: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppqwx7739' mode='r' encoding='UTF-8'>
155s   old_tmp_file = open(checkpoint_manager.checkpoint_path).readlines()
155s ResourceWarning: Enable tracemalloc to get the object allocation traceback
155s [06:50:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.zy89qczn.fasta
155s [06:50:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.lgjr8xbl.fasta
155s [06:50:08] checkpointing.py (line 68):     INFO: Checkpoint Saved to: /tmp/sepp/output.0ndgl6g0/checkpoints/dump8vvur70s and linked in /tmp/tmppqwx7739.
155s /usr/lib/python3/dist-packages/sepp/checkpointing.py:75: DeprecationWarning: setDaemon() is deprecated, set the daemon attribute instead
155s   checkpoint_manager.timer.setDaemon(True)
155s [06:50:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.qqnkqcu4.fasta
155s [06:50:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.si9a6qt8.fasta
156s [06:50:08] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.4y5d34g5.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.dmvrvjhi.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.dl_u376a.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.k0jdx1_b.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.n0ud716s.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.3tv0xjat.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.wahbq7jh.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.musygv69.fasta
156s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.2fhgbweo.fasta
157s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.8356gfuq.fasta
157s [06:50:09] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.gxjvf1kz.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.n29rnxh4.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.zaduzyt8.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.h5486qdm.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/hmmbuild.input.49iqld1l.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/hmmbuild.input.i6soeqyd.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.input.off2h6yo.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/hmmbuild.input.91h6qdlt.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/hmmbuild.input.afjhscvj.fasta
157s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/hmmbuild.input.hdzfikwo.fasta
158s [06:50:10] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/hmmbuild.input.o9ithxm7.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/hmmbuild.input.6inm2bbu.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.input.y6ojtpmi.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/hmmbuild.input.d22hu73m.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/hmmbuild.input.zbnoue63.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/hmmbuild.input.t5614mdl.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/hmmbuild.input.n8991qyw.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.g6rlfjjh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.x16n477q
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.g6rlfjjh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmsearch.results.mjo55482
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.a3bsudmp, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.bgr8ryxn
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.a3bsudmp, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmsearch.results.cefotm28
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.ejpnma9o, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.g1cty64l
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.ejpnma9o, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmsearch.results.9k3dwnhm
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.y4b2l67y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.cmkmq3ik
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/hmmbuild.input.ib3pzcxs.fasta
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.y4b2l67y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_1/hmmsearch.results.lqf2c8u0
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.1jxzq45s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.xpgr0vbf
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.1jxzq45s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmsearch.results.ikrkxx2y
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.ew3ddeup, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.w5eszpwj
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.ew3ddeup, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmsearch.results.qn8tgatv
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.pjdylo_f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.set5luoo
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.pjdylo_f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_1/hmmsearch.results.kcjvh4hk
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.9_1f6jlr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.r72jksi0
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.9_1f6jlr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_1/hmmsearch.results.uk1gua4p
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.b636exmc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.iosocfli
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.b636exmc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_1/hmmsearch.results.lyxzks6b
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.x57f0pb_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.b7oc9hkn
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.x57f0pb_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_1/hmmsearch.results.br2st719
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.kzt699dy, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.xkzm88mp
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.kzt699dy, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_1/hmmsearch.results._nikbcnr
158s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.f5zlywvt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.h5nvzagu
159s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.1a1sirki, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.b6ayfdqz
159s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.f5zlywvt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_1/hmmsearch.results.t6l4iqkn
159s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.1a1sirki, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmsearch.results.vj8q2nvs
159s [06:50:11] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.aetffsx1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.jeej2ww2
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.aetffsx1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmsearch.results.2sdofmt8
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.8q4_k5i5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.1oiveur1
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.8q4_k5i5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_1/hmmsearch.results.h7fpb719
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.kd1edpvf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.7gs5ndr1
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.kd1edpvf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_1/hmmsearch.results.hushkhhf
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.c7zwa95n, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.r9meja80
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.c7zwa95n, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_1/hmmsearch.results.4h018amr
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.59vmtgkj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.bcoxheil
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.59vmtgkj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_1/hmmsearch.results.ju5c32ad
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.6l7vh19c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.6l42nun1
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.6l7vh19c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_1/hmmsearch.results.jtdlcvsl
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/hmmbuild.model.cpcjxuln, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/FC_19_0_0/hmmsearch.results.pv5d7xrk
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/hmmbuild.model.cpcjxuln, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/FC_19_0_1/hmmsearch.results.mzrq2orw
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/hmmbuild.model.8660jgcp, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/FC_20_0_0/hmmsearch.results.jaxavt07
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/hmmbuild.model.8660jgcp, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/FC_20_0_1/hmmsearch.results.u79x_1zf
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.model.fcu6gy97, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/FC_21_0_0/hmmsearch.results.t8moelb8
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.model.fcu6gy97, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/FC_21_0_1/hmmsearch.results.jd0__mvc
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/hmmbuild.model.bvxv9q22, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/FC_23_0_0/hmmsearch.results.mcrkkflu
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/hmmbuild.model.bvxv9q22, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/FC_23_0_1/hmmsearch.results.49nluoy3
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/hmmbuild.model.9436pn6e, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/FC_22_0_0/hmmsearch.results.7bzq5kch
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/hmmbuild.model.9436pn6e, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/FC_22_0_1/hmmsearch.results.ibvxo542
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/hmmbuild.model.e7srszji, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/FC_24_0_0/hmmsearch.results.hmj_1a83
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/hmmbuild.model.e7srszji, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/FC_24_0_1/hmmsearch.results.c5dd0jeu
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/hmmbuild.model.0y56qdxx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/FC_25_0_1/hmmsearch.results.3whly15t
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/hmmbuild.model.0y56qdxx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/FC_25_0_0/hmmsearch.results.rh4gtbil
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/hmmbuild.model.2lpb6d97, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/FC_26_0_0/hmmsearch.results._seskum9
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/hmmbuild.model.2lpb6d97, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/FC_26_0_1/hmmsearch.results.ylssa2q2
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.model.9__54_w6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/FC_27_0_0/hmmsearch.results.w_ub_2s1
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.model.9__54_w6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/FC_27_0_1/hmmsearch.results.dotdcdf5
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/hmmbuild.model.9r8m0a5z, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/FC_28_0_0/hmmsearch.results.fa1h_gr_
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/hmmbuild.model.9r8m0a5z, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/FC_28_0_1/hmmsearch.results.btgd1dqa
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/hmmbuild.model.te70g1on, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/FC_29_0_0/hmmsearch.results.tt91c8ob
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/hmmbuild.model.te70g1on, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/FC_29_0_1/hmmsearch.results.zu9rbut4
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/hmmbuild.model.3xnujr7m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/FC_30_0_0/hmmsearch.results.em42i3l8
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/hmmbuild.model.3xnujr7m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/FC_30_0_1/hmmsearch.results.7hzuta7r
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/hmmbuild.model.q2__gncb, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/FC_31_0_0/hmmsearch.results.a69jq5l7
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/hmmbuild.model.q2__gncb, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/FC_31_0_1/hmmsearch.results.atz3i_fw
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/hmmbuild.model.ypap6xck, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0pdmmgaf3.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/FC_32_0_0/hmmsearch.results.i2hn41ka
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/hmmbuild.model.ypap6xck, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1n8jjkyt9.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/FC_32_0_1/hmmsearch.results.nweh7bih
159s [06:50:12] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.lgjr8xbl.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.zy89qczn.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.y4b2l67y, fragments:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag._f1chasb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.si9a6qt8.fasta
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.si9a6qt8.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.ejpnma9o, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.a9zkx3fd.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.qqnkqcu4.fasta
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.10m229f6' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.10m229f6) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.si9a6qt8.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.1jxzq45s, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.25o7vm0f.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.4y5d34g5.fasta
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.qqnkqcu4.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.mmu825fu' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.mmu825fu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.qqnkqcu4.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.ew3ddeup, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.gkpfuha9.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.dmvrvjhi.fasta
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.4y5d34g5.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.nto_m98p' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.nto_m98p) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.4y5d34g5.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.pjdylo_f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.kt190bjj.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.pjdylo_f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_1/hmmalign.frag.co9g1xyy.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.dmvrvjhi.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.2u6o9s86' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.2u6o9s86) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.dmvrvjhi.fasta).
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.n73x88s_' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.n73x88s_) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.9_1f6jlr, fragments:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.4nzi3efv.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.dl_u376a.fasta
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.ndytq6xz' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.ndytq6xz) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.4ba8ceo1.fasta).
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.k0jdx1_b.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.n0ud716s.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.model.fcu6gy97, fragments:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/FC_21_0_0/hmmalign.frag.ida8q18q.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.input.off2h6yo.fasta
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.3tv0xjat.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.wahbq7jh.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.model.9__54_w6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/FC_27_0_0/hmmalign.frag.sy5z5e1_.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.input.y6ojtpmi.fasta
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.musygv69.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.2fhgbweo.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.8356gfuq.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.gxjvf1kz.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.n29rnxh4.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.zaduzyt8.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.h5486qdm.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_19.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_19/A_19_0/hmmbuild.input.49iqld1l.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_20.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_20/A_20_0/hmmbuild.input.i6soeqyd.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.dl_u376a.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.cu7yikl8' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.cu7yikl8) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.dl_u376a.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.is5h29_q.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.i3ra_4ol.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.0skgjlte.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.0skgjlte.jplace
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_22.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_22/A_22_0/hmmbuild.input.afjhscvj.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_23.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_23/A_23_0/hmmbuild.input.91h6qdlt.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_24.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_24/A_24_0/hmmbuild.input.hdzfikwo.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.backbone.ebucr5h6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.tree.lt8gnsg4.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.mew5z9z0.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.mew5z9z0.jplace
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_25.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_25/A_25_0/hmmbuild.input.o9ithxm7.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_26.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_26/A_26_0/hmmbuild.input.6inm2bbu.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_21.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.input.off2h6yo.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.pnt5p14e' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.pnt5p14e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_21/A_21_0/hmmbuild.input.off2h6yo.fasta).
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_28.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_28/A_28_0/hmmbuild.input.d22hu73m.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_29.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_29/A_29_0/hmmbuild.input.zbnoue63.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_30.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_30/A_30_0/hmmbuild.input.t5614mdl.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_31.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_31/A_31_0/hmmbuild.input.n8991qyw.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_32.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_32/A_32_0/hmmbuild.input.ib3pzcxs.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.7rnxj367.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.493jzpxj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.4mv8ifeq.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.4mv8ifeq.jplace
159s [06:50:12] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_27.
159s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.input.y6ojtpmi.fasta' mode='r' encoding='UTF-8'>
159s   self.read_filepath(base_alignment, "FASTA")
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.y4e7s78a' mode='r' encoding='UTF-8'>
159s   ext.read_extended_alignment(path)
159s ResourceWarning: Enable tracemalloc to get the object allocation traceback
159s [06:50:12] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.y4e7s78a) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_27/A_27_0/hmmbuild.input.y6ojtpmi.fasta).
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.er36b9ek.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.f8bewenp.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.4t9dw3ny.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.4t9dw3ny.jplace
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.4h2o4lmf.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.dsd4q_p_.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.1.12qdfrz2.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.1.12qdfrz2.jplace
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.9au0nzt6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.ankxq1hb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.kz7pathr.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.kz7pathr.jplace
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.backbone.sum5ulpm.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.tree.zkvye9zf.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.jv6g1dxb.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.jv6g1dxb.jplace
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_21/pplacer.backbone.zhcsja4e.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_21/pplacer.tree.sfupm4qx.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_21/pplacer.extended.0.7z3nufsq.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_21/pplacer.extended.0.7z3nufsq.jplace
159s [06:50:12] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_27/pplacer.backbone.x_qpnh93.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_27/pplacer.tree.i5p3id19.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_27/pplacer.extended.0.0i68dmgb.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_27/pplacer.extended.0.0i68dmgb.jplace
159s [06:50:12] checkpointing.py (line 147):     INFO: Paused Checkpointing. Cumulative time: 0
160s [06:50:13] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpp_neelh4/output_placement.json
160s [06:50:13] checkpointing.py (line 136):     INFO: Stop Checkpointing. Cumulative time: 0
160s [06:50:13] algorithm.py (line 213):     INFO: Current execution Finished in 5 seconds
160s [06:50:13] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 0 cumulative time
160s [06:50:13] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testCheckPoint.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
160s   self.x.options.alignment_file = open(
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testCheckPoint.py:32: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
160s   self.x.options.info_file = open(
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testCheckPoint.py:36: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
160s   self.x.options.tree_file = open(
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testCheckPoint.py:39: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
160s   self.x.options.fragment_file = open(
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s ok
160s testConfigFile (testConfig.Test.testConfigFile) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'>
160s   setattr(namespace, self.dest, values)
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s ok
160s testConfigFileMissingFile (testConfig.Test.testConfigFileMissingFile) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:66: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
160s   setattr(namespace, self.dest, values)
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
160s   setattr(namespace, self.dest, values)
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/argparse.py:961: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'>
160s   setattr(namespace, self.dest, values)
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s ok
160s testCpuCount (testConfig.Test.testCpuCount) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /tmp/tmp.cLORIsIyxQ/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'>
160s   config._options_singelton = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s ok
160s testLog (testConfig.Test.testLog) ... [06:50:13] testConfig.py (line 147):    DEBUG: test debugging works
160s ok
160s testMainConfigFile (testConfig.Test.testMainConfigFile) ... [06:50:13] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmp82s4qx4i
160s Proceeding without the main configuration...
160s [06:50:13] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmp82s4qx4i
160s Proceeding without the main configuration...
160s [06:50:13] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmp82s4qx4i
160s Proceeding without the main configuration...
160s [06:50:13] config.py (line 338):  WARNING: Main configuration file was not found at: /tmp/tmp82s4qx4i
160s Proceeding without the main configuration...
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s [06:50:13] config.py (line 371):     INFO: Seed number: 297834
160s ok
160s testError (testExternalJobs.Test.testError) ... Traceback (most recent call last):
160s   File "/usr/lib/python3/dist-packages/sepp/jobs.py", line 150, in run
160s     raise JobError("\n".join([
160s     ...<3 lines>...
160s         if self.read_stderr() else 'No error messages available']))
160s sepp.scheduler.JobError: The following execution failed:
160s find somerandomdirectorywewillneverhavehere_ordowe
160s find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory
160s 
160s --- * algorithm <Logger sepp.algorithm (INFO)>
160s --- * alignment <Logger sepp.alignment (INFO)>
160s --- * backtranslate None
160s --- * checkpointing <Logger sepp.checkpointing (INFO)>
160s --- * config <Logger sepp.config (INFO)>
160s --- * decompose_tree <Logger sepp.decompose_tree (INFO)>
160s --- * ensemble None
160s --- * exhaustive <Logger sepp.exhaustive (INFO)>
160s --- * exhaustive_upp <Logger sepp.exhaustive_upp (INFO)>
160s --- * filemgr <Logger sepp.filemgr (INFO)>
160s --- * jobs <Logger sepp.jobs (INFO)>
160s --- * math_utils None
160s --- * problem <Logger sepp.problem (INFO)>
160s --- * scheduler <Logger sepp.scheduler (INFO)>
160s --- * scratch None
160s --- * tree <Logger sepp.tree (INFO)>
160s --- * algorithm <Logger sepp.algorithm (DEBUG)>
160s --- * alignment <Logger sepp.alignment (DEBUG)>
160s --- * backtranslate None
160s --- * checkpointing <Logger sepp.checkpointing (DEBUG)>
160s --- * config <Logger sepp.config (DEBUG)>
160s --- * decompose_tree <Logger sepp.decompose_tree (DEBUG)>
160s --- * ensemble None
160s --- * exhaustive <Logger sepp.exhaustive (DEBUG)>
160s --- * exhaustive_upp <Logger sepp.exhaustive_upp (DEBUG)>
160s --- * filemgr <Logger sepp.filemgr (DEBUG)>
160s --- * jobs <Logger sepp.jobs (DEBUG)>
160s --- * math_utils None
160s --- * problem <Logger sepp.problem (DEBUG)>
160s --- * scheduler <Logger sepp.scheduler (DEBUG)>
160s --- * scratch None
160s --- * tree <Logger sepp.tree (DEBUG)>
160s --- * algorithm <Logger sepp.algorithm (INFO)>
160s --- * alignment <Logger sepp.alignment (INFO)>
160s --- * backtranslate None
160s --- * checkpointing <Logger sepp.checkpointing (INFO)>
160s --- * config <Logger sepp.config (INFO)>
160s --- * decompose_tree <Logger sepp.decompose_tree (INFO)>
160s --- * ensemble None
160s --- * exhaustive <Logger sepp.exhaustive (INFO)>
160s --- * exhaustive_upp <Logger sepp.exhaustive_upp (INFO)>
160s --- * filemgr <Logger sepp.filemgr (INFO)>
160s --- * jobs <Logger sepp.jobs (INFO)>
160s --- * math_utils None
160s --- * problem <Logger sepp.problem (INFO)>
160s --- * scheduler <Logger sepp.scheduler (INFO)>
160s --- * scratch None
160s --- * tree <Logger sepp.tree (INFO)>
160s ok
160s testNoPipe (testExternalJobs.Test.testNoPipe) ... [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1)
160s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'>
160s   task = job = result = func = args = kwds = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'>
160s   task = job = result = func = args = kwds = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3/dist-packages/sepp/jobs.py:169: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='r' encoding='UTF-8'>
160s   return open(self._kwargs["stderr"].name, 'r').read()
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s Traceback (most recent call last):
160s   File "/usr/lib/python3/dist-packages/sepp/jobs.py", line 150, in run
160s     raise JobError("\n".join([
160s     ...<3 lines>...
160s         if self.read_stderr() else 'No error messages available']))
160s sepp.scheduler.JobError: The following execution failed:
160s find somerandomdirectorywewillneverhavehere_ordowe
160s find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory
160s 
160s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'>
160s   task = job = result = func = args = kwds = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s /usr/lib/python3.13/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'>
160s   task = job = result = func = args = kwds = None
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
160s ok
160s testSuccess (testExternalJobs.Test.testSuccess) ... [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testMidpoint.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testMidpoint.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testMidpoint.py (pipe: 0)
160s [06:50:13] jobs.py (line 131):     INFO: Finished test_find_job Job with input: pattern: .. options: -name testMidpoint.py (pipe: 0)
160s ok
160s testMerge (testMerge.Test.testMerge) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testMerge.py:25: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/tempmerge' mode='r' encoding='UTF-8'>
160s   stdindata = open(get_data_path("tmp/tempmerge")).read()
160s ResourceWarning: Enable tracemalloc to get the object allocation traceback
161s [06:50:14] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/mergedfile
161s [06:50:14] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/mergedfile
161s [06:50:14] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/mergedfile
161s [06:50:14] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.cLORIsIyxQ/test/unittest/data/tmp/mergedfile
161s ok
161s test_diamCent (testMidpoint.Test.test_diamCent) ... [06:50:14] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
161s [06:50:14] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
161s [06:50:14] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
161s [06:50:14] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
161s [06:50:14] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
161s [06:50:14] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
161s [06:50:14] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
161s [06:50:14] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
161s [06:50:14] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpl79y1nod', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
161s [06:50:14] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpl79y1nod', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
161s [06:50:14] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpl79y1nod', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
161s [06:50:14] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=None, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='centroid', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpl79y1nod', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
161s [06:50:14] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
161s [06:50:14] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
161s [06:50:14] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
161s [06:50:14] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
161s [06:50:14] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
161s [06:50:14] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
161s /usr/lib/python3.13/multiprocessing/pool.py:268: ResourceWarning: unclosed running multiprocessing pool <multiprocessing.pool.Pool state=RUN pool_size=2>
161s   _warn(f"unclosed running multiprocessing pool {self!r}",
161s ResourceWarning: Enable tracemalloc to get the object allocation traceback
161s [06:50:14] algorithm.py (line 298):     INFO: Tree has 508 leaves
161s [06:50:14] algorithm.py (line 298):     INFO: Tree has 508 leaves
161s [06:50:14] algorithm.py (line 298):     INFO: Tree has 508 leaves
161s [06:50:14] algorithm.py (line 298):     INFO: Tree has 508 leaves
161s [06:50:14] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
161s [06:50:14] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
161s [06:50:14] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
161s [06:50:14] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
161s [06:50:14] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
161s [06:50:14] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
161s [06:50:14] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
161s [06:50:14] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
161s [06:50:14] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
161s [06:50:14] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
161s [06:50:14] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
161s [06:50:14] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
161s [06:50:14] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
161s [06:50:14] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
161s [06:50:14] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
161s [06:50:14] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
161s [06:50:14] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.senl7nvi.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.senl7nvi.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.senl7nvi.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.senl7nvi.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.1cqnhh7n.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.1cqnhh7n.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.1cqnhh7n.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.1cqnhh7n.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input._hbpxhne.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input._hbpxhne.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input._hbpxhne.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input._hbpxhne.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.infkb9f7.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.infkb9f7.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.infkb9f7.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.infkb9f7.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.ek82ej3o.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.ek82ej3o.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.ek82ej3o.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.ek82ej3o.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.4lck7r9m.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.4lck7r9m.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.4lck7r9m.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.4lck7r9m.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.ghoy0dfn.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.ghoy0dfn.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.ghoy0dfn.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.ghoy0dfn.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.4fxrgmzm.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.4fxrgmzm.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.4fxrgmzm.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.4fxrgmzm.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.yncdzvew.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.yncdzvew.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.yncdzvew.fasta
162s [06:50:15] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.yncdzvew.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.6m07b87n.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.6m07b87n.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.6m07b87n.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.6m07b87n.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.sli6v5oe, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.is50evpg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.xm9ryabn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.hn57itnk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.greo7efo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.d09_um0j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.g4ezzpev, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.pjw7csph, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.minwefak, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_09075gylk.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.2kvc3ply, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_100kdehsr.fasta, elim:99999999, filter:False, output:Piped
163s [06:50:16] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
163s [06:50:16] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
163s [06:50:16] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
163s [06:50:16] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.cjzppdc1.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.cjzppdc1.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.cjzppdc1.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.wexdqpvr, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.cjzppdc1.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.zuwpjwa7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.zuwpjwa7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.zuwpjwa7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.zuwpjwa7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.n5nsdm5e' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.n5nsdm5e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.n5nsdm5e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.n5nsdm5e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.n5nsdm5e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.oq7m4nku.fasta).
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.9684h_ec.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.9684h_ec.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.9684h_ec.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.9684h_ec.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.605uqf5s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.605uqf5s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.605uqf5s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.fqjcsx0g, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.605uqf5s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.gnvafjrr' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.gnvafjrr) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.gnvafjrr) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.gnvafjrr) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.gnvafjrr) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.717xk44r' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.717xk44r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.717xk44r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.717xk44r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.717xk44r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.8e7d60ku.fasta).
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag.lamip36s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag.lamip36s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag.lamip36s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.pzaukypm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag.lamip36s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.z959hjr9' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.z959hjr9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.z959hjr9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.z959hjr9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.z959hjr9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.l1wwru5p' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.l1wwru5p) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.l1wwru5p) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.l1wwru5p) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.l1wwru5p) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.7oas0k1l.fasta).
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.9rd0ngqf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.9rd0ngqf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.9rd0ngqf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.db_slvdz, fragments:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.9rd0ngqf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.c11jb1zd.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.c11jb1zd.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.senl7nvi.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.c11jb1zd.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.ylvoivrx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.c11jb1zd.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.1cqnhh7n.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input._hbpxhne.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.slao41ll.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.slao41ll.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.slao41ll.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.x6uhep3p, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.slao41ll.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.1ykdm0oo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.1ykdm0oo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.1ykdm0oo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.g__fl2_2, fragments:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.1ykdm0oo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.infkb9f7.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.ek82ej3o.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.4lck7r9m.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.ghoy0dfn.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.l0kgfbji' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.l0kgfbji) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.l0kgfbji) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.l0kgfbji) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.l0kgfbji) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.8_ae_uz0.fasta).
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.4fxrgmzm.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.yncdzvew.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.rmde4f9e' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.rmde4f9e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.rmde4f9e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.rmde4f9e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.rmde4f9e) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.vz7h_b5r.fasta).
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.wlmoqe2_' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.wlmoqe2_) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.wlmoqe2_) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.wlmoqe2_) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.wlmoqe2_) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.2occ7ry9.fasta).
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.6m07b87n.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
163s [06:50:16] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
163s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta' mode='r' encoding='UTF-8'>
163s   self.read_filepath(base_alignment, "FASTA")
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.rttras8c' mode='r' encoding='UTF-8'>
163s   ext.read_extended_alignment(path)
163s ResourceWarning: Enable tracemalloc to get the object allocation traceback
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.rttras8c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.rttras8c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.rttras8c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta).
163s [06:50:16] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.rttras8c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.6y_3hedp.fasta).
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.backbone.cuyhkueg.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.tree.rhugxiln.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.backbone.cuyhkueg.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.tree.rhugxiln.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.backbone.cuyhkueg.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.tree.rhugxiln.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.backbone.cuyhkueg.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.tree.rhugxiln.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_0/pplacer.extended.0.gcahtr9o.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.ifpx3quj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.z54ah1bb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.ifpx3quj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.z54ah1bb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.ifpx3quj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.z54ah1bb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.ifpx3quj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.z54ah1bb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.edik0isg.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.2sr0amkx.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.0rlvtb9v.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.2sr0amkx.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.0rlvtb9v.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.2sr0amkx.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.0rlvtb9v.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.2sr0amkx.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.0rlvtb9v.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.k05eb6y2.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.km5g19_p.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.7873gyip.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.km5g19_p.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.7873gyip.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.km5g19_p.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.7873gyip.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.km5g19_p.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.7873gyip.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.n_cvvtwo.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.it6bm5fp.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.d8sgqa1i.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.it6bm5fp.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.d8sgqa1i.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.it6bm5fp.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.d8sgqa1i.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.it6bm5fp.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.d8sgqa1i.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.1.7cgrya22.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.backbone.gw_0imk0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.tree.hr01ygvk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.backbone.gw_0imk0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.tree.hr01ygvk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.backbone.gw_0imk0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.tree.hr01ygvk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.jplace
163s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.backbone.gw_0imk0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.tree.hr01ygvk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_3/pplacer.extended.0.8adpqwk4.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.3da40rba.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.g9ybq9gj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.3da40rba.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.g9ybq9gj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.3da40rba.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.g9ybq9gj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.3da40rba.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.g9ybq9gj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.ppsrufia.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.et2h3moj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.z1e381xl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.et2h3moj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.z1e381xl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.et2h3moj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.z1e381xl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.jplace
164s [06:50:16] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.et2h3moj.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.z1e381xl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.eg9h5_p8.jplace
164s [06:50:17] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.backbone.j0_relof.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.tree.6qdd6z37.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.jplace
164s [06:50:17] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.backbone.j0_relof.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.tree.6qdd6z37.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.jplace
164s [06:50:17] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.backbone.j0_relof.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.tree.6qdd6z37.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.jplace
164s [06:50:17] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.backbone.j0_relof.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.tree.6qdd6z37.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_15/pplacer.extended.0.7kozktww.jplace
164s [06:50:17] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpl79y1nod/output_placement.json
164s [06:50:17] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpl79y1nod/output_placement.json
164s [06:50:17] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpl79y1nod/output_placement.json
164s [06:50:17] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpl79y1nod/output_placement.json
164s [06:50:17] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
164s [06:50:17] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
164s [06:50:17] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
164s [06:50:17] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
164s [06:50:17] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
164s [06:50:17] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
164s [06:50:17] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
164s [06:50:17] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 9 cumulative time
164s [06:50:17] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
164s [06:50:17] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
164s [06:50:17] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
164s [06:50:17] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
164s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
164s   self.x.options.alignment_file = open(
164s ResourceWarning: Enable tracemalloc to get the object allocation traceback
164s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
164s   self.x.options.info_file = open(
164s ResourceWarning: Enable tracemalloc to get the object allocation traceback
164s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
164s   self.x.options.tree_file = open(
164s ResourceWarning: Enable tracemalloc to get the object allocation traceback
164s ok
164s test_diamMid (testMidpoint.Test.test_diamMid) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:56: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
164s   self.x.options.fragment_file = open(
164s ResourceWarning: Enable tracemalloc to get the object allocation traceback
164s [06:50:17] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
164s [06:50:17] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
164s [06:50:17] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
164s [06:50:17] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
164s [06:50:17] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
164s [06:50:17] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
164s [06:50:17] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
164s [06:50:17] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
164s [06:50:17] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpkh5tzhwy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
164s [06:50:17] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpkh5tzhwy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
164s [06:50:17] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpkh5tzhwy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
164s [06:50:17] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpkh5tzhwy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
164s [06:50:17] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
164s [06:50:17] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
164s [06:50:17] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
164s [06:50:17] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
164s [06:50:17] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
164s [06:50:17] algorithm.py (line 298):     INFO: Tree has 508 leaves
164s [06:50:17] algorithm.py (line 298):     INFO: Tree has 508 leaves
164s [06:50:17] algorithm.py (line 298):     INFO: Tree has 508 leaves
164s [06:50:17] algorithm.py (line 298):     INFO: Tree has 508 leaves
164s [06:50:17] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
164s [06:50:17] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
164s [06:50:17] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
164s [06:50:17] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
164s [06:50:17] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
164s [06:50:17] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
164s [06:50:17] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
164s [06:50:17] exhaustive.py (line 352):     INFO: Breaking into 17 placement subsets.
164s [06:50:17] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
164s [06:50:17] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
164s [06:50:17] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
164s [06:50:17] exhaustive.py (line 399):     INFO: Breaking into 17 alignment subsets.
164s [06:50:17] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
164s [06:50:17] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
164s [06:50:17] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
164s [06:50:17] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.tq6nynjf.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.tq6nynjf.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.tq6nynjf.fasta
164s [06:50:17] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.tq6nynjf.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.v_3y_a5z.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.v_3y_a5z.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.v_3y_a5z.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.v_3y_a5z.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ygqhci9s.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ygqhci9s.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ygqhci9s.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ygqhci9s.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.esomoz0y.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.esomoz0y.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.esomoz0y.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.esomoz0y.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.v07v9j7p.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.v07v9j7p.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.v07v9j7p.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.v07v9j7p.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.6edfgib6.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.6edfgib6.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.6edfgib6.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.6edfgib6.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.dh3u5cux.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.dh3u5cux.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.dh3u5cux.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.dh3u5cux.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.79kxs8a5.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.79kxs8a5.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.79kxs8a5.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.79kxs8a5.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
165s [06:50:18] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.mm8zkand.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.mm8zkand.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.mm8zkand.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.mm8zkand.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.qczc93yu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.w5v6wjec.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.w5v6wjec.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.w5v6wjec.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.w5v6wjec.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.mtcb3m20, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qermogd1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.6u5bfm07, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.r2c7j1cc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.naelxsms, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.ivh193lj, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.cqw3y9gv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.fhwb8sr5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0uu0jqrj7.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.spltxk85, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1haj40o4f.fasta, elim:99999999, filter:False, output:Piped
166s [06:50:19] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
166s [06:50:19] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
166s [06:50:19] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
166s [06:50:19] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.pmbd5q4r.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.pmbd5q4r.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.pmbd5q4r.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.efaj6n_q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.pmbd5q4r.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.tq6nynjf.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.b0cmpihy.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.b0cmpihy.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.b0cmpihy.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.cqmzpw19, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.b0cmpihy.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag._p8u_1vb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag._p8u_1vb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag._p8u_1vb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.kg6e0fp5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag._p8u_1vb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.gki32xh9' mode='r' encoding='UTF-8'>
166s   ext.read_extended_alignment(path)
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.gki32xh9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.gki32xh9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.gki32xh9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.gki32xh9) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.5yieppiz.fasta).
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.v_3y_a5z.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b5qaahaf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b5qaahaf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b5qaahaf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.xsdsp2vg, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b5qaahaf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ygqhci9s.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.8w29urrw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.8w29urrw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.8w29urrw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.8w29urrw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.sk32xz3q' mode='r' encoding='UTF-8'>
166s   ext.read_extended_alignment(path)
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.sk32xz3q) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.sk32xz3q) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.sk32xz3q) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta).
166s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.sk32xz3q) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.0mzu4gzn.fasta).
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.esomoz0y.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.b8lbsxim.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.b8lbsxim.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.b8lbsxim.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.dtq6v57b, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.b8lbsxim.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.v07v9j7p.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag.w_qbmo_v.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag.w_qbmo_v.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag.w_qbmo_v.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag.w_qbmo_v.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.6edfgib6.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.dh3u5cux.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.32dkcoi7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.32dkcoi7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.32dkcoi7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.lxq8ja6j, fragments:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.32dkcoi7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
166s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
166s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.79kxs8a5.fasta' mode='r' encoding='UTF-8'>
166s   self.read_filepath(base_alignment, "FASTA")
166s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.dswge8qc.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
167s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.dswge8qc.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
167s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.dswge8qc.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
167s [06:50:19] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.nxvilebx, fragments:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.dswge8qc.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.ipgl88ei' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.ipgl88ei) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.ipgl88ei) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.ipgl88ei) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.ipgl88ei) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.koox_97_.fasta).
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9kc6rmhx' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9kc6rmhx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9kc6rmhx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9kc6rmhx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9kc6rmhx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.e_727j2n.fasta).
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.xo1zn6f7' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.xo1zn6f7) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.xo1zn6f7) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.xo1zn6f7) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.xo1zn6f7) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.7ffjym8u' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.7ffjym8u) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.7ffjym8u) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.7ffjym8u) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.7ffjym8u) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.tt7wo58u.fasta).
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
167s [06:50:19] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.jv36mj5v' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.jv36mj5v) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.jv36mj5v) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.jv36mj5v) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:19] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.jv36mj5v) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.5mf2o251' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.5mf2o251) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.5mf2o251) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.5mf2o251) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.5mf2o251) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.rfe8zr92.fasta).
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.mm8zkand.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.w5v6wjec.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
167s [06:50:20] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
167s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta' mode='r' encoding='UTF-8'>
167s   self.read_filepath(base_alignment, "FASTA")
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.ohalw8_0' mode='r' encoding='UTF-8'>
167s   ext.read_extended_alignment(path)
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.ohalw8_0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.ohalw8_0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.ohalw8_0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta).
167s [06:50:20] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.ohalw8_0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.4weirc45.fasta).
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.mnejeau6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.cxa46jd0.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.mnejeau6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.cxa46jd0.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.mnejeau6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.cxa46jd0.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.backbone.mnejeau6.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.tree.cxa46jd0.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_2/pplacer.extended.0.mxdv9hhc.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.jhoguhnv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.u7jvho46.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.jhoguhnv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.u7jvho46.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.jhoguhnv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.u7jvho46.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.jhoguhnv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.u7jvho46.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.j05ektk7.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.il68dl27.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.dbliyqvw.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.il68dl27.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.dbliyqvw.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.il68dl27.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.dbliyqvw.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.il68dl27.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.dbliyqvw.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.rg5xj4g9.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.lf1pdgnu.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.5y2ect_y.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.lf1pdgnu.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.5y2ect_y.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.lf1pdgnu.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.5y2ect_y.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.lf1pdgnu.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.5y2ect_y.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.nttbab_k.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.y0lktwsi.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.28qmbuun.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.y0lktwsi.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.28qmbuun.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.y0lktwsi.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.28qmbuun.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.y0lktwsi.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.28qmbuun.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.1.b5ai7v64.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.u0w9gbqz.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.co_eq716.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.u0w9gbqz.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.co_eq716.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.u0w9gbqz.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.co_eq716.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.u0w9gbqz.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.co_eq716.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.x5_f6ph3.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.csn1fx__.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree._8g7j7mb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.csn1fx__.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree._8g7j7mb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.csn1fx__.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree._8g7j7mb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.csn1fx__.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree._8g7j7mb.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.1.4q41f3y5.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.0efe1o9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree.pz1p0pzg.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.0efe1o9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree.pz1p0pzg.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.0efe1o9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree.pz1p0pzg.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.backbone.0efe1o9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.tree.pz1p0pzg.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_13/pplacer.extended.0._075ukg8.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.vxzselvv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.g1sn1lgj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.vxzselvv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.g1sn1lgj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.vxzselvv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.g1sn1lgj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.backbone.vxzselvv.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.tree.g1sn1lgj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_14/pplacer.extended.0.qbjmvgct.jplace
167s [06:50:20] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpkh5tzhwy/output_placement.json
167s [06:50:20] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpkh5tzhwy/output_placement.json
167s [06:50:20] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpkh5tzhwy/output_placement.json
167s [06:50:20] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpkh5tzhwy/output_placement.json
167s [06:50:20] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
167s [06:50:20] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
167s [06:50:20] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
167s [06:50:20] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
167s [06:50:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
167s [06:50:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
167s [06:50:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
167s [06:50:20] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 12 cumulative time
167s [06:50:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
167s [06:50:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
167s [06:50:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
167s [06:50:20] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s   self.x.options.alignment_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
167s   self.x.options.info_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s   self.x.options.tree_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s ok
167s test_fake_jobs (testSepp.Test.test_fake_jobs) ... /tmp/tmp.cLORIsIyxQ/test/unittest/testSepp.py:28: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s   self.x.options.alignment_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testSepp.py:31: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>
167s   self.x.options.info_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testSepp.py:35: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s   self.x.options.tree_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s /tmp/tmp.cLORIsIyxQ/test/unittest/testSepp.py:83: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>
167s   self.x.options.fragment_file = open(
167s ResourceWarning: Enable tracemalloc to get the object allocation traceback
167s [06:50:20] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
167s [06:50:20] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
167s [06:50:20] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
167s [06:50:20] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
167s [06:50:20] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
167s [06:50:20] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
167s [06:50:20] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
167s [06:50:20] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
167s [06:50:20] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpspc_ug14', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
167s [06:50:20] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpspc_ug14', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
167s [06:50:20] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpspc_ug14', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
167s [06:50:20] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpspc_ug14', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
167s [06:50:20] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
167s [06:50:20] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
167s [06:50:20] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
167s [06:50:20] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
167s [06:50:20] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
167s [06:50:20] algorithm.py (line 298):     INFO: Tree has 508 leaves
167s [06:50:20] algorithm.py (line 298):     INFO: Tree has 508 leaves
167s [06:50:20] algorithm.py (line 298):     INFO: Tree has 508 leaves
167s [06:50:20] algorithm.py (line 298):     INFO: Tree has 508 leaves
167s [06:50:20] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
167s [06:50:20] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
167s [06:50:20] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
167s [06:50:20] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
167s [06:50:20] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
167s [06:50:20] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
167s [06:50:20] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
167s [06:50:20] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
167s [06:50:20] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
167s [06:50:20] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
167s [06:50:20] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
167s [06:50:20] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
167s [06:50:20] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
167s [06:50:20] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
167s [06:50:20] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
167s [06:50:20] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.jixctire.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.jixctire.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.jixctire.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.jixctire.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.43ad_8yt.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.43ad_8yt.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.43ad_8yt.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.43ad_8yt.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.btxs60f5.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.btxs60f5.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.btxs60f5.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.btxs60f5.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.cfn22qin.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.cfn22qin.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.cfn22qin.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.cfn22qin.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.v8m1i94l.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.v8m1i94l.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.v8m1i94l.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.v8m1i94l.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ivt1jo1e.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ivt1jo1e.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ivt1jo1e.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ivt1jo1e.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.qe701lyb.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.qe701lyb.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.qe701lyb.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.qe701lyb.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.473jz22q.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.473jz22q.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.473jz22q.fasta
168s [06:50:21] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.473jz22q.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.sp7ly_gz.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.sp7ly_gz.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.sp7ly_gz.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.sp7ly_gz.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.2pz50vuo.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.2pz50vuo.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.2pz50vuo.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.2pz50vuo.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.hp9j4sr6.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.hp9j4sr6.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.hp9j4sr6.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.hp9j4sr6.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.62rfg2ws.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.62rfg2ws.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.62rfg2ws.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.62rfg2ws.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.sr8kne6q.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.sr8kne6q.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.sr8kne6q.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.sr8kne6q.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.y8vl403t.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.y8vl403t.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.y8vl403t.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.y8vl403t.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.4muzyymh.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.4muzyymh.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.4muzyymh.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.4muzyymh.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.58x021e1.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.58x021e1.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.58x021e1.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.58x021e1.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.fn4_0ej8.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.fn4_0ej8.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.fn4_0ej8.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.fn4_0ej8.fasta
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.1i_0au28, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.1i_0au28, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.1i_0au28, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.1i_0au28, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.ac6sjgg4, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.ac6sjgg4, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.ac6sjgg4, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.ac6sjgg4, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.3_nrggm2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.3_nrggm2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.3_nrggm2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.3_nrggm2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.wmgiskze, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.wmgiskze, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.wmgiskze, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.wmgiskze, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.e1yvt69f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.e1yvt69f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.e1yvt69f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.e1yvt69f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qyx4qe5a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qyx4qe5a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qyx4qe5a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
169s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qyx4qe5a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.l734ga9k, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.l734ga9k, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.l734ga9k, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.l734ga9k, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.qwl59_kr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.qwl59_kr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.qwl59_kr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:22] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.qwl59_kr, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.zoyg6250, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.zoyg6250, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.zoyg6250, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.zoyg6250, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.vataz7lu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.vataz7lu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.vataz7lu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.vataz7lu, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.xa7eri9c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.xa7eri9c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.xa7eri9c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.xa7eri9c, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.th220l2t, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.th220l2t, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.th220l2t, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.th220l2t, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.0cy30mh6.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.0cy30mh6.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.0cy30mh6.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.0cy30mh6.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.g10cf_l1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.g10cf_l1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.g10cf_l1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.g10cf_l1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.y0q71x5s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.y0q71x5s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.y0q71x5s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.y0q71x5s, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.2gn3zba9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.2gn3zba9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.2gn3zba9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.2gn3zba9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.ywa5yvzf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.ywa5yvzf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.ywa5yvzf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.ywa5yvzf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.b4fm70dh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.b4fm70dh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.b4fm70dh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.b4fm70dh, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.o93lugdw, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.o93lugdw, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.o93lugdw, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.o93lugdw, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0645yoctj.fasta, elim:99999999, filter:False, output:Piped
170s [06:50:23] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
170s [06:50:23] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
170s [06:50:23] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
170s [06:50:23] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.43ad_8yt.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.btxs60f5.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.cfn22qin.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.ivt1jo1e.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.n4vleq8u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.n4vleq8u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.n4vleq8u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
170s [06:50:23] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.y41m4dyh, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.n4vleq8u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.v8m1i94l.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.qe701lyb.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.473jz22q.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.sp7ly_gz.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.2pz50vuo.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.hp9j4sr6.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.jixctire.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.62rfg2ws.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.sr8kne6q.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.y8vl403t.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.4muzyymh.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.58x021e1.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.fn4_0ej8.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.0cy30mh6.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
170s [06:50:23] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
170s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta' mode='r' encoding='UTF-8'>
170s   self.read_filepath(base_alignment, "FASTA")
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.1od1tiwx' mode='r' encoding='UTF-8'>
170s   ext.read_extended_alignment(path)
170s ResourceWarning: Enable tracemalloc to get the object allocation traceback
170s [06:50:23] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.1od1tiwx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta).
170s [06:50:23] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.1od1tiwx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta).
170s [06:50:23] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.1od1tiwx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta).
170s [06:50:23] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.1od1tiwx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.xkzfa4py.fasta).
170s [06:50:23] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.zbab5na2.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.os0pz8_u.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.jplace
170s [06:50:23] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.zbab5na2.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.os0pz8_u.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.jplace
170s [06:50:23] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.zbab5na2.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.os0pz8_u.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.jplace
170s [06:50:23] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.zbab5na2.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.os0pz8_u.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.y440pk9l.jplace
170s [06:50:23] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpspc_ug14/output_placement.json
170s [06:50:23] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpspc_ug14/output_placement.json
170s [06:50:23] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpspc_ug14/output_placement.json
170s [06:50:23] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpspc_ug14/output_placement.json
170s [06:50:23] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
170s [06:50:23] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
170s [06:50:23] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
170s [06:50:23] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
170s [06:50:23] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
170s [06:50:23] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
170s [06:50:23] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
170s [06:50:23] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 15 cumulative time
170s [06:50:23] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
170s [06:50:23] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
170s [06:50:23] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
170s [06:50:23] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
170s ok
170s test_id_collision_collision (testSepp.Test.test_id_collision_collision) ... [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpg4pvpeww', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpg4pvpeww', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpg4pvpeww', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpg4pvpeww', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_collide.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s ok
170s test_id_collision_working (testSepp.Test.test_id_collision_working) ... [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpmt0wgvzn', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpmt0wgvzn', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpmt0wgvzn', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpmt0wgvzn', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 298):     INFO: Tree has 508 leaves
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
170s [06:50:23] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
170s [06:50:23] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
170s [06:50:23] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
170s [06:50:23] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.zph5ewse.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.zph5ewse.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.zph5ewse.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.zph5ewse.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.iwmo_6mf.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.iwmo_6mf.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.iwmo_6mf.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.iwmo_6mf.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.x894d7hj.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.x894d7hj.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.x894d7hj.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.x894d7hj.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
171s [06:50:24] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.cbeapd34.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.cbeapd34.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.cbeapd34.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.cbeapd34.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.vu8epexv.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.vu8epexv.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.vu8epexv.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.vu8epexv.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.31xl6ss1.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.31xl6ss1.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.31xl6ss1.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.31xl6ss1.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.qrc8w1g2.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.qrc8w1g2.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.qrc8w1g2.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.qrc8w1g2.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.hclxhswq.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.hclxhswq.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.hclxhswq.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.hclxhswq.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.z1nk7nod.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.z1nk7nod.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.z1nk7nod.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.z1nk7nod.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.5gsx_r0z.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.5gsx_r0z.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.5gsx_r0z.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.5gsx_r0z.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.090g34lm.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.090g34lm.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.090g34lm.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.090g34lm.fasta
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.68c7glsn, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
172s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:25] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.cc242s1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.s9tofda7.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.s9tofda7.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.s9tofda7.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.s9tofda7.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.0ej_pq1u, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.t0xeinrk, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.se3cpibi, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.i1xazufc, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.dulacpgf, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.2eb1res2, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.ifp_nrc1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.kgupnidt, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.uvivqo9p, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0povov4jv.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.1ch18gam, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1wbh70u_i.fasta, elim:99999999, filter:False, output:Piped
173s [06:50:26] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
173s [06:50:26] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
173s [06:50:26] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
173s [06:50:26] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.zph5ewse.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.4wbm1dje.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.4wbm1dje.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.4wbm1dje.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.4wbm1dje.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.x894d7hj.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.zua2c9zq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.zua2c9zq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.zua2c9zq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.gh89vx43, fragments:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.zua2c9zq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.iwmo_6mf.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.zmplvxpq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.zmplvxpq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.zmplvxpq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.zmplvxpq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.q_jvjjxw' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.q_jvjjxw) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.q_jvjjxw) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.q_jvjjxw) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.q_jvjjxw) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.41vryb80' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.41vryb80) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.41vryb80) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.41vryb80) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.41vryb80) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.6s383xu0.fasta).
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.hfdnx_zz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.hfdnx_zz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.hfdnx_zz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.fsbk2z2r, fragments:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.hfdnx_zz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.9bh5wilw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.9bh5wilw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.9bh5wilw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.9bh5wilw.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results._h9g_ts2' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results._h9g_ts2) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results._h9g_ts2) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results._h9g_ts2) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmalign.results._h9g_ts2) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.qltz_ye0' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.qltz_ye0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.qltz_ye0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.qltz_ye0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.qltz_ye0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.439amask.fasta).
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.isgb18jq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.isgb18jq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.isgb18jq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.lsynra7f, fragments:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.isgb18jq.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.hwl49ew8.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.hwl49ew8.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.hwl49ew8.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.oxy50fbv, fragments:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.hwl49ew8.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.gyqyyykx' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.gyqyyykx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.gyqyyykx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.gyqyyykx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.gyqyyykx) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.65amlsgw.fasta).
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.59bmm48r' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.59bmm48r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.59bmm48r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.59bmm48r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b47e9k6o.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b47e9k6o.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b47e9k6o.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model._0wjivpm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.b47e9k6o.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.59bmm48r) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.w84wdp9f.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.w84wdp9f.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.w84wdp9f.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.6kmmd0eq, fragments:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.w84wdp9f.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.bk2a4znu' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.bk2a4znu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.bk2a4znu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.bk2a4znu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.bk2a4znu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.sno682gm.fasta).
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.vu8epexv.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.3u5birn4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.3u5birn4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.3u5birn4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
173s [06:50:26] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.772bek_y, fragments:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.3u5birn4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.cbeapd34.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.31xl6ss1.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.6wrmd2s0' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.6wrmd2s0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.6wrmd2s0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.6wrmd2s0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.6wrmd2s0) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.qeqkxjww.fasta).
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f60ifm38' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f60ifm38) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f60ifm38) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f60ifm38) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.f60ifm38) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.8bc1ow6e.fasta).
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.qrc8w1g2.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.hclxhswq.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.z1nk7nod.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.5gsx_r0z.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.090g34lm.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.s9tofda7.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
173s [06:50:26] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
173s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta' mode='r' encoding='UTF-8'>
173s   self.read_filepath(base_alignment, "FASTA")
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.g9etmveq' mode='r' encoding='UTF-8'>
173s   ext.read_extended_alignment(path)
173s ResourceWarning: Enable tracemalloc to get the object allocation traceback
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.g9etmveq) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.g9etmveq) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.g9etmveq) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta).
173s [06:50:26] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.g9etmveq) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.588123jy.fasta).
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.avzbi5hr.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.vmepu5ii.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.avzbi5hr.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.vmepu5ii.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.avzbi5hr.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.vmepu5ii.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.avzbi5hr.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.vmepu5ii.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.1.kj9dszo0.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.lwm9e7p8.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.hu8hrf12.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.lwm9e7p8.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.hu8hrf12.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.lwm9e7p8.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.hu8hrf12.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.backbone.lwm9e7p8.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.tree.hu8hrf12.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_1/pplacer.extended.0.bjx5xoa9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.n30dx1w4.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.0oo5k0ep.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.n30dx1w4.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.0oo5k0ep.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.n30dx1w4.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.0oo5k0ep.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.n30dx1w4.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.0oo5k0ep.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.1.jvboy14j.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.rg0h3u7_.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.yf4ykmco.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.rg0h3u7_.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.yf4ykmco.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.rg0h3u7_.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.yf4ykmco.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.backbone.rg0h3u7_.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.tree.yf4ykmco.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_4/pplacer.extended.0.ah8dqvsf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.0fms2c5j.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.0uw2lf45.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.0fms2c5j.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.0uw2lf45.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.0fms2c5j.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.0uw2lf45.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.0fms2c5j.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.0uw2lf45.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.0.8vliq0c9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.3gmt3fqo.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.donzy6iv.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.3gmt3fqo.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.donzy6iv.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.3gmt3fqo.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.donzy6iv.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.backbone.3gmt3fqo.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.tree.donzy6iv.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_6/pplacer.extended.0.k4l6b37i.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.y9le3e9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.ywso7upk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.y9le3e9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.ywso7upk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.y9le3e9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.ywso7upk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.backbone.y9le3e9d.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.tree.ywso7upk.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_5/pplacer.extended.1.910c9xql.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.e2tpr6wq.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.o2roifmj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.e2tpr6wq.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.o2roifmj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.e2tpr6wq.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.o2roifmj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.e2tpr6wq.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.o2roifmj.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.uleofsyi.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.bie5seek.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.eyjqpkjl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.bie5seek.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.eyjqpkjl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.bie5seek.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.eyjqpkjl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.backbone.bie5seek.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.tree.eyjqpkjl.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_12/pplacer.extended.0.572vgpjf.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.backbone.gyzh_qp7.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.tree.c__27fyu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.backbone.gyzh_qp7.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.tree.c__27fyu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.backbone.gyzh_qp7.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.tree.c__27fyu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.jplace
173s [06:50:26] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.backbone.gyzh_qp7.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.tree.c__27fyu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_7/pplacer.extended.0.2xzxfwp9.jplace
174s [06:50:27] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpmt0wgvzn/output_placement.json
174s [06:50:27] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpmt0wgvzn/output_placement.json
174s [06:50:27] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpmt0wgvzn/output_placement.json
174s [06:50:27] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpmt0wgvzn/output_placement.json
174s [06:50:27] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
174s [06:50:27] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
174s [06:50:27] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
174s [06:50:27] algorithm.py (line 213):     INFO: Current execution Finished in 3 seconds
174s [06:50:27] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
174s [06:50:27] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
174s [06:50:27] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
174s [06:50:27] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 19 cumulative time
174s [06:50:27] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
174s [06:50:27] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
174s [06:50:27] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
174s [06:50:27] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
174s ok
174s test_notpiped_jobs (testSepp.Test.test_notpiped_jobs) ... [06:50:27] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
174s [06:50:27] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
174s [06:50:27] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
174s [06:50:27] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
174s [06:50:27] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
174s [06:50:27] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
174s [06:50:27] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
174s [06:50:27] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
174s [06:50:27] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpbcnq4nsy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
174s [06:50:27] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpbcnq4nsy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
174s [06:50:27] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpbcnq4nsy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
174s [06:50:27] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpbcnq4nsy', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_tiny.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
174s [06:50:27] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
174s [06:50:27] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
174s [06:50:27] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
174s [06:50:27] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
174s [06:50:27] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
174s [06:50:27] algorithm.py (line 298):     INFO: Tree has 508 leaves
174s [06:50:27] algorithm.py (line 298):     INFO: Tree has 508 leaves
174s [06:50:27] algorithm.py (line 298):     INFO: Tree has 508 leaves
174s [06:50:27] algorithm.py (line 298):     INFO: Tree has 508 leaves
174s [06:50:27] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
174s [06:50:27] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
174s [06:50:27] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
174s [06:50:27] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
174s [06:50:27] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
174s [06:50:27] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
174s [06:50:27] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
174s [06:50:27] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
174s [06:50:27] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
174s [06:50:27] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
174s [06:50:27] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
174s [06:50:27] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
174s [06:50:27] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
174s [06:50:27] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
174s [06:50:27] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
174s [06:50:27] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input._nzm0ere.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input._nzm0ere.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input._nzm0ere.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input._nzm0ere.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.623l69sw.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.623l69sw.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.623l69sw.fasta
174s [06:50:27] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.623l69sw.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.q6w0oyrq.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.q6w0oyrq.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.q6w0oyrq.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.q6w0oyrq.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.mrlsthen.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.mrlsthen.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.mrlsthen.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.mrlsthen.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.26ew1ic4.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.26ew1ic4.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.26ew1ic4.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.26ew1ic4.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.5ztjsmjz.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.5ztjsmjz.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.5ztjsmjz.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.5ztjsmjz.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.bp_7b7_i.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.bp_7b7_i.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.bp_7b7_i.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.bp_7b7_i.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.d6vwt19c.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.d6vwt19c.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.d6vwt19c.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.d6vwt19c.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.2e8qmc77.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.2e8qmc77.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.2e8qmc77.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.2e8qmc77.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.o4u85p3h.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.o4u85p3h.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.o4u85p3h.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.o4u85p3h.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.nzeapu_u.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.nzeapu_u.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.nzeapu_u.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.nzeapu_u.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
175s [06:50:28] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.crdnjkng.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.crdnjkng.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.crdnjkng.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.crdnjkng.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.kygv0usf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.kygv0usf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.kygv0usf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.kygv0usf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.3kwfn0hf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.3kwfn0hf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.3kwfn0hf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.3kwfn0hf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.f4jllmg9.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.f4jllmg9.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.f4jllmg9.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.f4jllmg9.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.k3oui_pg.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.k3oui_pg.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.k3oui_pg.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.k3oui_pg.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.o2u56ryh.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.o2u56ryh.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.o2u56ryh.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.o2u56ryh.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.q7rtmuus, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.lclwygk6
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.q7rtmuus, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.lclwygk6
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.q7rtmuus, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.lclwygk6
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.q7rtmuus, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.lclwygk6
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.s8sc1cga, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.pletht7l
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.s8sc1cga, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.pletht7l
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.s8sc1cga, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.pletht7l
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.model.s8sc1cga, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.pletht7l
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.kipfgmta, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.zi1is0qf
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.kipfgmta, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.zi1is0qf
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.kipfgmta, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.zi1is0qf
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.model.kipfgmta, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.zi1is0qf
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.cfch16g1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.nt0m1_cp
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.cfch16g1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.nt0m1_cp
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.cfch16g1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.nt0m1_cp
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.model.cfch16g1, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.nt0m1_cp
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qhy7uu3i, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.k4skkimj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qhy7uu3i, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.k4skkimj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qhy7uu3i, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.k4skkimj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.model.qhy7uu3i, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.k4skkimj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.94585h5j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.3hu3337b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.94585h5j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.3hu3337b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.94585h5j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.3hu3337b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.model.94585h5j, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.3hu3337b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.s5dzva1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.zyhwj4z4
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.s5dzva1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.zyhwj4z4
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.s5dzva1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.zyhwj4z4
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.model.s5dzva1r, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.zyhwj4z4
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.pqjpjk3x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results._oixo7nv
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.pqjpjk3x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results._oixo7nv
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.pqjpjk3x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results._oixo7nv
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.model.pqjpjk3x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results._oixo7nv
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.d70m8z4m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.wq6anmw1
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.d70m8z4m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.wq6anmw1
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.d70m8z4m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.wq6anmw1
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.model.d70m8z4m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.wq6anmw1
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.rv0wptn3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.e75cjxrk
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.rv0wptn3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.e75cjxrk
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.rv0wptn3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.e75cjxrk
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.model.rv0wptn3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.e75cjxrk
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.jhcq_8v9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.vfzbvfr8
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.jhcq_8v9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.vfzbvfr8
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.jhcq_8v9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.vfzbvfr8
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.model.jhcq_8v9, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.vfzbvfr8
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.7bvjnwcu.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.7bvjnwcu.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.7bvjnwcu.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.7bvjnwcu.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.8sjjdagr
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.8sjjdagr
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.8sjjdagr
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.8sjjdagr
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.xjx5_xvl, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.c6heln1b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.xjx5_xvl, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.c6heln1b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.xjx5_xvl, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.c6heln1b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.model.xjx5_xvl, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.c6heln1b
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.v69gqc_x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.wfjmr00q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.v69gqc_x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.wfjmr00q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.v69gqc_x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.wfjmr00q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.model.v69gqc_x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.wfjmr00q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.cf9y1dwa, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.lijzhw_g
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.cf9y1dwa, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.lijzhw_g
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.cf9y1dwa, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.lijzhw_g
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.model.cf9y1dwa, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.lijzhw_g
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.v7n8dp8m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.1lw090ul
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.v7n8dp8m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.1lw090ul
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.v7n8dp8m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.1lw090ul
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.model.v7n8dp8m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.1lw090ul
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.h2ostug5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.9qrh_3yj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.h2ostug5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.9qrh_3yj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.h2ostug5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.9qrh_3yj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.model.h2ostug5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.9qrh_3yj
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.pqrto96m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.746w7q7q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.pqrto96m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.746w7q7q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.pqrto96m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.746w7q7q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.model.pqrto96m, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.746w7q7q
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.tuhpljd_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.udcqzoes
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.tuhpljd_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.udcqzoes
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.tuhpljd_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.udcqzoes
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.model.tuhpljd_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_0mqx0mgkj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.udcqzoes
176s [06:50:29] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
176s [06:50:29] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
176s [06:50:29] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
176s [06:50:29] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input._nzm0ere.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_1/A_1_0/hmmbuild.input.623l69sw.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_2/A_2_0/hmmbuild.input.mrlsthen.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.pjrazzvk.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.pjrazzvk.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.pjrazzvk.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
176s [06:50:29] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.model.t5gesp5v, fragments:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.pjrazzvk.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_3/A_3_0/hmmbuild.input.q6w0oyrq.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_4/A_4_0/hmmbuild.input.26ew1ic4.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_5/A_5_0/hmmbuild.input.5ztjsmjz.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_6/A_6_0/hmmbuild.input.bp_7b7_i.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_7/A_7_0/hmmbuild.input.d6vwt19c.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_8/A_8_0/hmmbuild.input.2e8qmc77.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_9/A_9_0/hmmbuild.input.o4u85p3h.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_10/A_10_0/hmmbuild.input.nzeapu_u.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_12/A_12_0/hmmbuild.input.crdnjkng.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_13/A_13_0/hmmbuild.input.kygv0usf.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_14/A_14_0/hmmbuild.input.3kwfn0hf.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_15.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_15/A_15_0/hmmbuild.input.f4jllmg9.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_16.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_16/A_16_0/hmmbuild.input.k3oui_pg.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_17.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_17/A_17_0/hmmbuild.input.o2u56ryh.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_18.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_18/A_18_0/hmmbuild.input.7bvjnwcu.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
176s [06:50:29] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
176s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta' mode='r' encoding='UTF-8'>
176s   self.read_filepath(base_alignment, "FASTA")
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.me2qario' mode='r' encoding='UTF-8'>
176s   ext.read_extended_alignment(path)
176s ResourceWarning: Enable tracemalloc to get the object allocation traceback
176s [06:50:29] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.me2qario) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta).
176s [06:50:29] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.me2qario) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta).
176s [06:50:29] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.me2qario) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta).
176s [06:50:29] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.me2qario) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_11/A_11_0/hmmbuild.input.890a6wcf.fasta).
176s [06:50:29] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.bnemzse0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.6y61a8bu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.jplace
176s [06:50:29] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.bnemzse0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.6y61a8bu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.jplace
176s [06:50:29] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.bnemzse0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.6y61a8bu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.jplace
176s [06:50:29] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.backbone.bnemzse0.fasta, tree_file:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.tree.6y61a8bu.tre, info_file:/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.fasta, output:/tmp/sepp/output.0ndgl6g0/root/P_11/pplacer.extended.0.21hqcbpn.jplace
177s [06:50:30] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpbcnq4nsy/output_placement.json
177s [06:50:30] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpbcnq4nsy/output_placement.json
177s [06:50:30] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpbcnq4nsy/output_placement.json
177s [06:50:30] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpbcnq4nsy/output_placement.json
177s [06:50:30] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
177s [06:50:30] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
177s [06:50:30] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
177s [06:50:30] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
177s [06:50:30] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 22 cumulative time
177s [06:50:30] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 22 cumulative time
177s [06:50:30] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 22 cumulative time
177s [06:50:30] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 22 cumulative time
177s [06:50:30] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
177s [06:50:30] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
177s [06:50:30] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
177s [06:50:30] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
177s ok
177s test_seqnames_whitespaces (testSepp.Test.test_seqnames_whitespaces) ... [06:50:30] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpz0f4th43', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpz0f4th43', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpz0f4th43', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=40, placement_size=40, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpz0f4th43', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1)
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 508 sequences and 1285 sites
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 508 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 508 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 508 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 508 leaves
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 40 placement: 40
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 19 placement subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 19 alignment subsets.
177s ok
177s test_id_collision_working (testUPP.Test.test_id_collision_working) ... [06:50:30] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 153):     INFO: UPP version 4.5.5 used with HMMER version 3.4
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpqrwcefel', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpqrwcefel', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpqrwcefel', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
177s [06:50:30] algorithm.py (line 157):     INFO: All options: Namespace(alignment_size=50, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=0.1, decomp_strategy='midpoint', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmpqrwcefel', config_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>, tree_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/q2-fragment-insertion/input_fragments_spaces.fasta' mode='r' encoding='UTF-8'>, molecule='amino', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9f1c23a92b0>, checkpoint_interval=3600, seed=297834, pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch'), exhaustive=Namespace(strategy='centroid', minsubsetsize='20', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), fragmentChunkSize=1, backbone_size=407, backtranslation_sequence_file=None, long_branch_filter=100000, sequence_file=<_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/query.fas' mode='r' encoding='UTF-8'>)
177s /usr/lib/python3/dist-packages/sepp/exhaustive_upp.py:192: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
177s   sequences.read_file_object(open(self.options.alignment_file.name))
177s ResourceWarning: Enable tracemalloc to get the object allocation traceback
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasta' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
177s [06:50:30] algorithm.py (line 288):     INFO: Alignment has 407 sequences and 458 sites
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/upp_frag/backbone_pasta.fasttree' mode='r' encoding='UTF-8'>
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 407 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 407 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 407 leaves
177s [06:50:30] algorithm.py (line 298):     INFO: Tree has 407 leaves
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
177s [06:50:30] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 50 placement: 407
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
177s [06:50:30] exhaustive.py (line 352):     INFO: Breaking into 1 placement subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
177s [06:50:30] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
177s [06:50:30] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
177s [06:50:30] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
177s [06:50:30] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
177s [06:50:30] exhaustive_upp.py (line 375):     INFO: 0 taxa pruned from backbone and added to fragments: 
177s [06:50:30] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
177s [06:50:30] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
177s [06:50:30] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
177s [06:50:30] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
178s [06:50:30] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
178s [06:50:31] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_07_dza0t2.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/fragment_chunks/fragment_chunk_1cgm85tgk.fasta, elim:99999999, filter:False, output:Piped
179s [06:50:32] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
179s [06:50:32] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
179s [06:50:32] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
179s [06:50:32] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.k99vhz5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.k99vhz5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.k99vhz5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.k99vhz5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ybl8qy5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ybl8qy5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ybl8qy5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.frag.ybl8qy5y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ln2omyvs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ln2omyvs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ln2omyvs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.model.vabk4at3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.frag.ln2omyvs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.y7xzx6n5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.y7xzx6n5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.y7xzx6n5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.model.0ttheb0x, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.frag.y7xzx6n5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.2at6nhei.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.2at6nhei.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.2at6nhei.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.frag.2at6nhei.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.uzpo7d32.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.uzpo7d32.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.uzpo7d32.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.model.uz5iop8a, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.frag.uzpo7d32.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.11f8__gs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.11f8__gs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.11f8__gs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.frag.11f8__gs.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.0ab6cn7c.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.0ab6cn7c.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.0ab6cn7c.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.model.vo3hlou_, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.frag.0ab6cn7c.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.clxxush4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.clxxush4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.clxxush4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.frag.clxxush4.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.5_f7ex3l.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.5_f7ex3l.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.5_f7ex3l.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.frag.5_f7ex3l.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.te6qng45.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.te6qng45.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.te6qng45.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.model.ge9p3nh8, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.frag.te6qng45.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.ahyvk_wb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.ahyvk_wb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.ahyvk_wb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.model.qmi733c3, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.frag.ahyvk_wb.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.adij70y_.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.adij70y_.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.adij70y_.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.frag.adij70y_.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.agjpdcwz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.agjpdcwz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.agjpdcwz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.model.lhreyflm, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.frag.agjpdcwz.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.wi0bf478.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.wi0bf478.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.wi0bf478.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.model.3l0d3131, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.frag.wi0bf478.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag.4ca1sjbr.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag.4ca1sjbr.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag.4ca1sjbr.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.frag.4ca1sjbr.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.1h2rn6yj.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.1h2rn6yj.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.1h2rn6yj.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.model.4ix9tcr0, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.frag.1h2rn6yj.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.lujqq1z6.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.lujqq1z6.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.lujqq1z6.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.frag.lujqq1z6.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.ii9oich0.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.ii9oich0.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.ii9oich0.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.model.2uk705us, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.frag.ii9oich0.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.krgjyr4s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.krgjyr4s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.krgjyr4s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.frag.krgjyr4s.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag.repciz8y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag.repciz8y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag.repciz8y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.model.mamd0e48, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.frag.repciz8y.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.ebjg7udi.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.ebjg7udi.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.ebjg7udi.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.frag.ebjg7udi.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.avhj7bvf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.avhj7bvf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.avhj7bvf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.model.tzp7r24q, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.frag.avhj7bvf.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.9rnwyxoo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.9rnwyxoo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.9rnwyxoo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.frag.9rnwyxoo.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag.7ebtcg3u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag.7ebtcg3u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag.7ebtcg3u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.model.9tke7ed6, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.frag.7ebtcg3u.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.ap0ru3q7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.ap0ru3q7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.ap0ru3q7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.frag.ap0ru3q7.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.0d13qqet.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.0d13qqet.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.0d13qqet.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.model.3p2eqtxo, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.frag.0d13qqet.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.16j_j2m5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.16j_j2m5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.16j_j2m5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.frag.16j_j2m5.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.whkx3z81.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.whkx3z81.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.whkx3z81.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.model.upn5y0o5, fragments:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.frag.whkx3z81.fasta, trim:False, base_alignment:/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta
179s [06:50:32] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
179s [06:50:32] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
179s [06:50:32] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
179s [06:50:32] exhaustive_upp.py (line 221):     INFO: Merging sub-alignments for placement problem : P_0.
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.78nza1qi' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.78nza1qi) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.78nza1qi) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.78nza1qi) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.78nza1qi) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.92qj272j' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.92qj272j) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.92qj272j) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.92qj272j) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/FC_0_0_1/hmmalign.results.92qj272j) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_0/hmmbuild.input.a0mbnwez.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.g2o6qmtg' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.g2o6qmtg) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.g2o6qmtg) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.g2o6qmtg) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_0/hmmalign.results.g2o6qmtg) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.yaw0hjxd' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.yaw0hjxd) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.yaw0hjxd) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.yaw0hjxd) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/FC_0_1_1/hmmalign.results.yaw0hjxd) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_1/hmmbuild.input.2rr4ruso.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.a_f45sov' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.a_f45sov) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.a_f45sov) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.a_f45sov) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_0/hmmalign.results.a_f45sov) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.results.d9qr09ib' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.results.d9qr09ib) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.results.d9qr09ib) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.results.d9qr09ib) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/FC_0_2_1/hmmalign.results.d9qr09ib) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_2/hmmbuild.input.02rr1nh7.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.4kugr1da' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.4kugr1da) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.4kugr1da) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.4kugr1da) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_0/hmmalign.results.4kugr1da) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.7stnyh7l' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.7stnyh7l) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.7stnyh7l) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.7stnyh7l) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/FC_0_3_1/hmmalign.results.7stnyh7l) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_3/hmmbuild.input.ei_hknwy.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.nxpj7m_d' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.nxpj7m_d) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.nxpj7m_d) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.nxpj7m_d) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_0/hmmalign.results.nxpj7m_d) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.u03zezey' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.u03zezey) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.u03zezey) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.u03zezey) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/FC_0_4_1/hmmalign.results.u03zezey) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_4/hmmbuild.input.ifm0pcvr.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.opstnltt' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.opstnltt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.opstnltt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.opstnltt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_0/hmmalign.results.opstnltt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.results._eniv9cu' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.results._eniv9cu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.results._eniv9cu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.results._eniv9cu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/FC_0_5_1/hmmalign.results._eniv9cu) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_5/hmmbuild.input.8kog4t09.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.gj7t7ykb' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.gj7t7ykb) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.gj7t7ykb) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.gj7t7ykb) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_0/hmmalign.results.gj7t7ykb) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.8d14d3d1' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.8d14d3d1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.8d14d3d1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.8d14d3d1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/FC_0_6_1/hmmalign.results.8d14d3d1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_6/hmmbuild.input.hr1ikhju.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.56oxnhik' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.56oxnhik) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.56oxnhik) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.56oxnhik) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/FC_0_7_0/hmmalign.results.56oxnhik) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_7/hmmbuild.input.lfp5tdwc.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.vo81yiyo' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.vo81yiyo) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.vo81yiyo) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.vo81yiyo) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_0/hmmalign.results.vo81yiyo) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.p3djozp1' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.p3djozp1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.p3djozp1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.p3djozp1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/FC_0_8_1/hmmalign.results.p3djozp1) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_8/hmmbuild.input.i6uoqbat.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.39cybgxp' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.39cybgxp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.39cybgxp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.39cybgxp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_0/hmmalign.results.39cybgxp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.oxi8feqp' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.oxi8feqp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.oxi8feqp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.oxi8feqp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/FC_0_9_1/hmmalign.results.oxi8feqp) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_9/hmmbuild.input.mruiq3kj.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.sj8cicel' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.sj8cicel) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.sj8cicel) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.sj8cicel) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_0/hmmalign.results.sj8cicel) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.9ekeqeqt' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.9ekeqeqt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.9ekeqeqt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.9ekeqeqt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/FC_0_10_1/hmmalign.results.9ekeqeqt) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_10/hmmbuild.input.pz2t29rt.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.q1k4ie_c' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.q1k4ie_c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.q1k4ie_c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.q1k4ie_c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_0/hmmalign.results.q1k4ie_c) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.results.b07rhsmj' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.results.b07rhsmj) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.results.b07rhsmj) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.results.b07rhsmj) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/FC_0_11_1/hmmalign.results.b07rhsmj) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_11/hmmbuild.input.ij10y3sx.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.93lbaede' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.93lbaede) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.93lbaede) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.93lbaede) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_0/hmmalign.results.93lbaede) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.pbisl83w' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.pbisl83w) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.pbisl83w) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.pbisl83w) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/FC_0_12_1/hmmalign.results.pbisl83w) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_12/hmmbuild.input.3zbf98it.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.ac_l60bn' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.ac_l60bn) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.ac_l60bn) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.ac_l60bn) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_0/hmmalign.results.ac_l60bn) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.uvmq9mnf' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.uvmq9mnf) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.uvmq9mnf) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.uvmq9mnf) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/FC_0_13_1/hmmalign.results.uvmq9mnf) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_13/hmmbuild.input.zf92lq0v.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:558: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta' mode='r' encoding='UTF-8'>
179s   self.read_filepath(base_alignment, "FASTA")
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.z71zuvvz' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.z71zuvvz) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.z71zuvvz) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.z71zuvvz) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_0/hmmalign.results.z71zuvvz) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s /usr/lib/python3/dist-packages/sepp/alignment.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.pgyf4s6f' mode='r' encoding='UTF-8'>
179s   ext.read_extended_alignment(path)
179s ResourceWarning: Enable tracemalloc to get the object allocation traceback
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.pgyf4s6f) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.pgyf4s6f) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.pgyf4s6f) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/FC_0_14_1/hmmalign.results.pgyf4s6f) into base alignment (/tmp/sepp/output.0ndgl6g0/root/P_0/A_0_14/hmmbuild.input.0jso1s6c.fasta).
179s [06:50:32] exhaustive_upp.py (line 304):     INFO: Generating output. 
179s [06:50:32] exhaustive_upp.py (line 304):     INFO: Generating output. 
179s [06:50:32] exhaustive_upp.py (line 304):     INFO: Generating output. 
179s [06:50:32] exhaustive_upp.py (line 304):     INFO: Generating output. 
179s [06:50:32] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpqrwcefel/output_alignment.fasta
179s [06:50:32] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpqrwcefel/output_alignment.fasta
179s [06:50:32] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpqrwcefel/output_alignment.fasta
179s [06:50:32] exhaustive_upp.py (line 307):     INFO: Unmasked alignment written to /tmp/tmpqrwcefel/output_alignment.fasta
179s [06:50:32] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpqrwcefel/output_insertion_columns.txt
179s [06:50:32] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpqrwcefel/output_insertion_columns.txt
179s [06:50:32] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpqrwcefel/output_insertion_columns.txt
179s [06:50:32] exhaustive_upp.py (line 310):     INFO: The index of insertion columns written to /tmp/tmpqrwcefel/output_insertion_columns.txt
179s [06:50:32] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpqrwcefel/output_alignment_masked.fasta
179s [06:50:32] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpqrwcefel/output_alignment_masked.fasta
179s [06:50:32] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpqrwcefel/output_alignment_masked.fasta
179s [06:50:32] exhaustive_upp.py (line 341):     INFO: Masked alignment written to /tmp/tmpqrwcefel/output_alignment_masked.fasta
179s [06:50:32] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
179s [06:50:32] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
179s [06:50:32] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
179s [06:50:32] algorithm.py (line 213):     INFO: Current execution Finished in 2 seconds
179s [06:50:32] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
179s [06:50:32] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
179s [06:50:32] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
179s [06:50:32] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 24 cumulative time
179s [06:50:32] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
179s [06:50:32] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
179s [06:50:32] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
179s [06:50:32] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.0ndgl6g0
179s ok
179s 
179s ----------------------------------------------------------------------
179s Ran 21 tests in 25.520s
179s 
179s OK
179s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.cLORIsIyxQ/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'>
180s autopkgtest [06:50:33]: test run-build-tests: -----------------------]
180s run-build-tests      PASS
180s autopkgtest [06:50:33]: test run-build-tests:  - - - - - - - - - - results - - - - - - - - - -
181s autopkgtest [06:50:34]: test test-simple-sepp-call: preparing testbed
181s Reading package lists...
181s Building dependency tree...
181s Reading state information...
181s Solving dependencies...
182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
183s autopkgtest [06:50:36]: test test-simple-sepp-call: [-----------------------
183s [06:50:36] config.py (line 371):     INFO: Seed number: 297834
183s [06:50:36] algorithm.py (line 153):     INFO: SEPP version 4.5.5 used with HMMER version 3.4
183s [06:50:36] algorithm.py (line 155):     INFO: Will user HMMER located at /usr/bin/hmmbuild
183s [06:50:36] algorithm.py (line 157):     INFO: All options: Namespace(pplacer=Namespace(path='/usr/bin/pplacer'), hmmalign=Namespace(path='/usr/bin/hmmalign'), hmmsearch=Namespace(path='/usr/bin/hmmsearch', piped='False', elim='10000', filters='True'), hmmbuild=Namespace(path='/usr/bin/hmmbuild'), jsonmerger=Namespace(path='/usr/share/sepp/seppJsonMerger.jar'), exhaustive=Namespace(strategy='centroid', minsubsetsize='2', placementminsubsetsizefacotr='4', placer='pplacer', weight_placement_by_alignment='True'), alignment_size=None, placement_size=None, max_chunk_size=20000, distance=1, maxDiam=None, decomp_strategy='normal', tempdir='/tmp/sepp', remtemp=False, output='output', outdir='/tmp/tmp.n16Z2HluXG/test/unittest/data', config_file=None, tree_file=<_io.TextIOWrapper name='mock/pyrg/sate.tre' mode='r' encoding='UTF-8'>, info_file=<_io.TextIOWrapper name='mock/pyrg/sate.tre.RAxML_info' mode='r' encoding='UTF-8'>, alignment_file=<_io.TextIOWrapper name='mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>, fragment_file=<_io.TextIOWrapper name='mock/pyrg/pyrg.even.fas' mode='r' encoding='UTF-8'>, molecule='dna', ignore_overlap=False, cpu=2, checkpoint=<sepp.checkpointing.CheckPointManager object at 0xf9e111357b60>, checkpoint_interval=3600, seed=297834)
183s [06:50:36] algorithm.py (line 284):     INFO: Reading input alignment: <_io.TextIOWrapper name='mock/pyrg/sate.fasta' mode='r' encoding='UTF-8'>
183s [06:50:36] algorithm.py (line 288):     INFO: Alignment has 65 sequences and 2054 sites
183s [06:50:36] algorithm.py (line 293):     INFO: Reading input tree: <_io.TextIOWrapper name='mock/pyrg/sate.tre' mode='r' encoding='UTF-8'>
183s [06:50:36] algorithm.py (line 298):     INFO: Tree has 65 leaves
183s [06:50:36] algorithm.py (line 264):     INFO: Decomposition Sizes are set to alignment: 6 placement: 6
183s [06:50:36] exhaustive.py (line 352):     INFO: Breaking into 15 placement subsets.
183s [06:50:36] exhaustive.py (line 399):     INFO: Breaking into 15 alignment subsets.
183s [06:50:36] filemgr.py (line 129):     INFO: Root temp directory built: /tmp/sepp/output.id6_a88f
183s [06:50:36] exhaustive.py (line 414):     INFO: Breaking each alignment subset into 2 fragment chunks.
183s [06:50:36] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.input._lus185u.fasta
183s [06:50:36] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.input.k6dfgmt8.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_2/A_2_0/hmmbuild.input.htg_did9.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.input.avfh9784.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.input.e28szw5d.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.input.v59ohgug.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.input.ldct0ov8.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_7/A_7_0/hmmbuild.input.iw8xzjkj.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.input.5b4mfrmo.fasta
184s [06:50:37] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_8/A_8_0/hmmbuild.input.caqjil6n.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.input.9vo6dgbh.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_10/A_10_0/hmmbuild.input.ehcsqa6o.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_12/A_12_0/hmmbuild.input.x08y7w6u.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_13/A_13_0/hmmbuild.input.hxg63if1.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.model.rcmc0eyt, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.p6fub7kp
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmbuild Job with input: /tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.input.jf2papn8.fasta
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.model.0vlsm_1r, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.82yoxuq5
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.model.rcmc0eyt, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/FC_0_0_1/hmmsearch.results.uzkstj4o
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_2/A_2_0/hmmbuild.model.cgzc_5qs, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.0f9z2am2
185s [06:50:38] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.model.0vlsm_1r, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_1/hmmsearch.results.ng_dv9aq
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.model.lkldqk6c, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.34ie82q3
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_2/A_2_0/hmmbuild.model.cgzc_5qs, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_2/A_2_0/FC_2_0_1/hmmsearch.results.fyzryv7i
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.model.lkldqk6c, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/FC_3_0_1/hmmsearch.results.6fbkoqw6
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.model.5az5rshx, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.418_j9y9
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.model.5az5rshx, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_1/hmmsearch.results.s0skbd8y
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.model.vjv1bpf8, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.dh2zyc1l
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.model.vjv1bpf8, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_1/hmmsearch.results.oa_y7u7a
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.model.qf_dwms7, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.k3gbxe2f
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_7/A_7_0/hmmbuild.model.rj44gmkb, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.ovaqnp7h
186s [06:50:39] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.model.qf_dwms7, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/FC_6_0_1/hmmsearch.results.bxx4066o
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_7/A_7_0/hmmbuild.model.rj44gmkb, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_7/A_7_0/FC_7_0_1/hmmsearch.results.gvkg_zen
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.model.fvao57yu, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.qfuhryho
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.model.fvao57yu, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_1/hmmsearch.results.9vgjb_ey
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_8/A_8_0/hmmbuild.model.e58twjke, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.9pnuqbn2
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_8/A_8_0/hmmbuild.model.e58twjke, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_8/A_8_0/FC_8_0_1/hmmsearch.results.y200djtd
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.model.rja_a12z, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.33p28coc
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_10/A_10_0/hmmbuild.model.ack9_2lq, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.8ixvxvry
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.model.rja_a12z, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_1/hmmsearch.results.w98zq_u6
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_10/A_10_0/hmmbuild.model.ack9_2lq, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_10/A_10_0/FC_10_0_1/hmmsearch.results.fx03p5y9
187s [06:50:40] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_12/A_12_0/hmmbuild.model.spurh8ms, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.6akyhgh0
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_13/A_13_0/hmmbuild.model.5xswu75c, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.l6rw2njw
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_12/A_12_0/hmmbuild.model.spurh8ms, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_12/A_12_0/FC_12_0_1/hmmsearch.results.5p1mj42_
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_13/A_13_0/hmmbuild.model.5xswu75c, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_13/A_13_0/FC_13_0_1/hmmsearch.results.e9bb9mv6
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.model._0zuwbhj, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_0gqo5wezo.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.0yig45x7
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.model._0zuwbhj, fragments:/tmp/sepp/output.id6_a88f/fragment_chunks/fragment_chunk_14d34teh_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_1/hmmsearch.results.g6exbup8
188s [06:50:41] exhaustive.py (line 81):  WARNING: Fragments [] are not scored against any subset
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.model.rcmc0eyt, fragments:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.fz1ujnf7.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.input._lus185u.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_0.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.e_vm6pui) into base alignment (/tmp/sepp/output.id6_a88f/root/P_0/A_0_0/hmmbuild.input._lus185u.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.model.0vlsm_1r, fragments:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.w7pkpw4q.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.input.k6dfgmt8.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_2.
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.model.0vlsm_1r, fragments:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.e4tsba2t.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.input.k6dfgmt8.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_1.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.ju9s2pv8) into base alignment (/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.input.k6dfgmt8.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.model.lkldqk6c, fragments:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.8aokyyv7.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.input.avfh9784.fasta
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.qtu1aa3_) into base alignment (/tmp/sepp/output.id6_a88f/root/P_1/A_1_0/hmmbuild.input.k6dfgmt8.fasta).
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_3.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.6vcin1n5) into base alignment (/tmp/sepp/output.id6_a88f/root/P_3/A_3_0/hmmbuild.input.avfh9784.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.model.5az5rshx, fragments:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.kevmqw5n.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.input.e28szw5d.fasta
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.model.5az5rshx, fragments:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.3l6h7bvc.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.input.e28szw5d.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_4.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.zqn2f6jw) into base alignment (/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.input.e28szw5d.fasta).
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.fbk9ecaq) into base alignment (/tmp/sepp/output.id6_a88f/root/P_4/A_4_0/hmmbuild.input.e28szw5d.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.model.vjv1bpf8, fragments:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.fk051iet.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.input.v59ohgug.fasta
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.model.vjv1bpf8, fragments:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.xux0l0vk.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.input.v59ohgug.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_5.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.6y4k20hs) into base alignment (/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.input.v59ohgug.fasta).
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.n6vmemds) into base alignment (/tmp/sepp/output.id6_a88f/root/P_5/A_5_0/hmmbuild.input.v59ohgug.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.model.qf_dwms7, fragments:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.qm14inrd.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.input.ldct0ov8.fasta
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.model.fvao57yu, fragments:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_0/hmmalign.frag.tgg836hg.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.input.5b4mfrmo.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_7.
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_8.
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_6.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.9w737692) into base alignment (/tmp/sepp/output.id6_a88f/root/P_6/A_6_0/hmmbuild.input.ldct0ov8.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.model.fvao57yu, fragments:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_1/hmmalign.frag.9rz_dzb2.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.input.5b4mfrmo.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_10.
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_9.
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.model.rja_a12z, fragments:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.oyat62q3.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.input.9vo6dgbh.fasta
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_0/hmmalign.results.csngwjdw) into base alignment (/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.input.5b4mfrmo.fasta).
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/FC_9_0_1/hmmalign.results.2emjj0gz) into base alignment (/tmp/sepp/output.id6_a88f/root/P_9/A_9_0/hmmbuild.input.5b4mfrmo.fasta).
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_12.
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_13.
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.model.rja_a12z, fragments:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_1/hmmalign.frag.4fak5bkk.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.input.9vo6dgbh.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_11.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.xvfc_u6r) into base alignment (/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.input.9vo6dgbh.fasta).
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/FC_11_0_1/hmmalign.results.or6prbtl) into base alignment (/tmp/sepp/output.id6_a88f/root/P_11/A_11_0/hmmbuild.input.9vo6dgbh.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.model._0zuwbhj, fragments:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ybvtrq1y.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.input.jf2papn8.fasta
188s [06:50:41] jobs.py (line 131):     INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.model._0zuwbhj, fragments:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_1/hmmalign.frag.yugg1rto.fasta, trim:False, base_alignment:/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.input.jf2papn8.fasta
188s [06:50:41] exhaustive.py (line 152):     INFO: Merging sub-alignments for placement problem : P_14.
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.oaor8bje) into base alignment (/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.input.jf2papn8.fasta).
188s [06:50:41] alignment.py (line 570):     INFO: Merging extension sto file (/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/FC_14_0_1/hmmalign.results.usvc4oou) into base alignment (/tmp/sepp/output.id6_a88f/root/P_14/A_14_0/hmmbuild.input.jf2papn8.fasta).
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_0/pplacer.backbone.cgqg351g.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_0/pplacer.tree.998eu5yw.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_0/pplacer.extended.0.fc5k5649.fasta, output:/tmp/sepp/output.id6_a88f/root/P_0/pplacer.extended.0.fc5k5649.jplace
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.backbone.71vzs5gj.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.tree.oh220pyx.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.extended.0.t_do4ntp.fasta, output:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.extended.0.t_do4ntp.jplace
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.backbone.7vpoxtmc.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.tree.bxipsi1e.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.extended.1.1mc3wxua.fasta, output:/tmp/sepp/output.id6_a88f/root/P_1/pplacer.extended.1.1mc3wxua.jplace
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_3/pplacer.backbone.aryn9xbe.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_3/pplacer.tree.9su_fy3j.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_3/pplacer.extended.0.qhwiew_v.fasta, output:/tmp/sepp/output.id6_a88f/root/P_3/pplacer.extended.0.qhwiew_v.jplace
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.backbone.isyco6gu.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.tree.gi9780v8.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.extended.1.jxjx2385.fasta, output:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.extended.1.jxjx2385.jplace
188s [06:50:41] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.backbone.bnv5ajht.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.tree.c2nnq2ul.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.extended.0.d7qze1e3.fasta, output:/tmp/sepp/output.id6_a88f/root/P_4/pplacer.extended.0.d7qze1e3.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.backbone.sgt9g16n.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.tree.ys8tv0h3.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.extended.0.0vbu4u12.fasta, output:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.extended.0.0vbu4u12.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_6/pplacer.backbone._1ffn4rx.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_6/pplacer.tree.201vqxnq.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_6/pplacer.extended.0.ndsjpov6.fasta, output:/tmp/sepp/output.id6_a88f/root/P_6/pplacer.extended.0.ndsjpov6.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.backbone.nx9vjf6p.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.tree.8zf5i5p7.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.extended.0.rpne3406.fasta, output:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.extended.0.rpne3406.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.backbone.f2om8y4v.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.tree.xz6zv01v.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.extended.1.cbbh00rj.fasta, output:/tmp/sepp/output.id6_a88f/root/P_5/pplacer.extended.1.cbbh00rj.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.backbone.l23l8hpx.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.tree.5hs98b78.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.extended.1.10dndmr_.fasta, output:/tmp/sepp/output.id6_a88f/root/P_9/pplacer.extended.1.10dndmr_.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.backbone.hyhm63db.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.tree.xjnf116v.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.extended.0.ogpt577d.fasta, output:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.extended.0.ogpt577d.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.backbone.9osh0xzy.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.tree.437rlrq1.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.extended.1.0t96mpke.fasta, output:/tmp/sepp/output.id6_a88f/root/P_11/pplacer.extended.1.0t96mpke.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.backbone.5qi6lova.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.tree.2vf6ugmj.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.extended.0.lbla6dbm.fasta, output:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.extended.0.lbla6dbm.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.backbone.7pwp0yhv.fasta, tree_file:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.tree.g6ah56ra.tre, info_file:mock/pyrg/sate.tre.RAxML_info, extended alignment:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.extended.1.2k0dj5mk.fasta, output:/tmp/sepp/output.id6_a88f/root/P_14/pplacer.extended.1.2k0dj5mk.jplace
189s [06:50:42] jobs.py (line 131):     INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.n16Z2HluXG/test/unittest/data/output_placement.json
189s [06:50:42] algorithm.py (line 213):     INFO: Current execution Finished in 6 seconds
189s [06:50:42] algorithm.py (line 215):     INFO: All checkpointed executions Finished in 6 cumulative time
189s [06:50:42] algorithm.py (line 224):     INFO: Temp files are left behind at /tmp/sepp/output.id6_a88f
190s autopkgtest [06:50:43]: test test-simple-sepp-call: -----------------------]
190s autopkgtest [06:50:43]: test test-simple-sepp-call:  - - - - - - - - - - results - - - - - - - - - -
190s test-simple-sepp-call PASS
191s autopkgtest [06:50:44]: @@@@@@@@@@@@@@@@@@@@ summary
191s run-build-tests      PASS
191s test-simple-sepp-call PASS