0s autopkgtest [00:18:48]: starting date and time: 2026-02-10 00:18:48+0000 0s autopkgtest [00:18:48]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:18:48]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vpybthlf/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade roary --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-21.secgroup --name adt-resolute-arm64-roary-20260210-001848-juju-7f2275-prod-proposed-migration-environment-20-2d0a3db6-51de-4b3a-9db1-1b61aaf2cdfb --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-roary-20260210-001848-juju-7f2275-prod-proposed-migration-environment-20-2d0a3db6-51de-4b3a-9db1-1b61aaf2cdfb from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 123s autopkgtest [00:20:51]: testbed dpkg architecture: arm64 123s autopkgtest [00:20:51]: testbed apt version: 3.1.15 123s autopkgtest [00:20:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 123s autopkgtest [00:20:51]: testbed release detected to be: None 124s autopkgtest [00:20:52]: updating testbed package index (apt update) 124s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 125s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 125s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [173 kB] 125s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 125s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1637 kB] 128s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [248 kB] 128s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6236 B] 128s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 128s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1568 kB] 130s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.1 kB] 130s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 130s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 132s Fetched 3840 kB in 6s (664 kB/s) 132s Reading package lists... 133s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 133s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 134s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Calculating upgrade... 135s The following NEW packages will be installed: 135s gcc-16-base 135s The following packages will be upgraded: 135s cryptsetup-bin dracut-install iproute2 iptables libatomic1 libcryptsetup12 135s libgcc-s1 libip4tc2 libip6tc2 libstdc++6 libxtables12 wget 135s 12 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 135s Need to get 3433 kB of archives. 135s After this operation, 218 kB of additional disk space will be used. 135s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-16-base arm64 16-20260208-1ubuntu1 [59.7 kB] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-s1 arm64 16-20260208-1ubuntu1 [60.9 kB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 135s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 135s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 135s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 135s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 137s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libatomic1 arm64 16-20260208-1ubuntu1 [11.1 kB] 137s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 137s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++6 arm64 16-20260208-1ubuntu1 [768 kB] 139s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 139s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 139s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 139s dpkg-preconfigure: unable to re-open stdin: No such file or directory 139s Fetched 3433 kB in 3s (1007 kB/s) 139s Selecting previously unselected package gcc-16-base:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 139s Preparing to unpack .../gcc-16-base_16-20260208-1ubuntu1_arm64.deb ... 139s Unpacking gcc-16-base:arm64 (16-20260208-1ubuntu1) ... 139s Setting up gcc-16-base:arm64 (16-20260208-1ubuntu1) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136602 files and directories currently installed.) 139s Preparing to unpack .../libgcc-s1_16-20260208-1ubuntu1_arm64.deb ... 139s Unpacking libgcc-s1:arm64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 139s Setting up libgcc-s1:arm64 (16-20260208-1ubuntu1) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136602 files and directories currently installed.) 140s Preparing to unpack .../00-iptables_1.8.11-2ubuntu3_arm64.deb ... 140s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 140s Preparing to unpack .../01-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 140s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 140s Preparing to unpack .../02-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 140s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 140s Preparing to unpack .../03-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 140s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 140s Preparing to unpack .../04-iproute2_6.18.0-1ubuntu1_arm64.deb ... 140s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 140s Preparing to unpack .../05-libatomic1_16-20260208-1ubuntu1_arm64.deb ... 140s Unpacking libatomic1:arm64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 140s Preparing to unpack .../06-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 140s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 140s Preparing to unpack .../07-libstdc++6_16-20260208-1ubuntu1_arm64.deb ... 140s Unpacking libstdc++6:arm64 (16-20260208-1ubuntu1) over (15.2.0-12ubuntu1) ... 141s Preparing to unpack .../08-wget_1.25.0-2ubuntu4_arm64.deb ... 141s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 141s Preparing to unpack .../09-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 141s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 141s Preparing to unpack .../10-dracut-install_109-11ubuntu1_arm64.deb ... 141s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 141s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 141s Setting up wget (1.25.0-2ubuntu4) ... 141s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 141s Setting up libatomic1:arm64 (16-20260208-1ubuntu1) ... 141s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 141s Setting up dracut-install (109-11ubuntu1) ... 141s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 141s Setting up libstdc++6:arm64 (16-20260208-1ubuntu1) ... 141s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 141s Setting up iptables (1.8.11-2ubuntu3) ... 141s Setting up iproute2 (6.18.0-1ubuntu1) ... 141s Processing triggers for man-db (2.13.1-1build1) ... 142s Processing triggers for install-info (7.2-5) ... 142s Processing triggers for libc-bin (2.42-2ubuntu4) ... 142s autopkgtest [00:21:10]: upgrading testbed (apt dist-upgrade and autopurge) 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Calculating upgrade... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [00:21:15]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 147s autopkgtest [00:21:15]: @@@@@@@@@@@@@@@@@@@@ apt-source roary 149s Get:1 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (dsc) [2531 B] 149s Get:2 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (tar) [207 kB] 149s Get:3 http://ftpmaster.internal/ubuntu resolute/universe roary 3.13.0+dfsg-2build1 (diff) [7404 B] 149s gpgv: Signature made Thu Jan 29 20:41:13 2026 UTC 149s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-2build1.dsc: no acceptable signature found 149s autopkgtest [00:21:17]: testing package roary version 3.13.0+dfsg-2build1 149s autopkgtest [00:21:17]: build not needed 150s autopkgtest [00:21:18]: test run-unit-test: preparing testbed 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Solving dependencies... 151s The following NEW packages will be installed: 151s bedtools bioperl cd-hit fasttree fontconfig fontconfig-config 151s fonts-dejavu-core fonts-dejavu-mono libalgorithm-c3-perl 151s libalgorithm-diff-perl libarray-utils-perl libb-hooks-op-check-perl 151s libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libclass-c3-perl 151s libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl 151s libclass-xsaccessor-perl libclone-perl libconst-fast-perl 151s libdata-compare-perl libdata-optlist-perl libdata-stag-perl libdatrie1 151s libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl 151s libdevel-overloadinfo-perl libdevel-stacktrace-perl libdigest-md5-file-perl 151s libdist-checkconflicts-perl libdynaloader-functions-perl 151s libencode-locale-perl libenv-path-perl libeval-closure-perl 151s libexception-class-perl libfile-chdir-perl libfile-find-rule-perl 151s libfile-grep-perl libfile-listing-perl libfile-slurper-perl 151s libfile-which-perl libfindbin-libs-perl libfontconfig1 libgfortran5 libgomp1 151s libgraph-perl libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b 151s libheap-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 151s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 151s libhttp-negotiate-perl libice6 libio-all-perl libio-html-perl 151s libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8 151s liblapack3 liblerc4 liblog-log4perl-perl liblwp-mediatypes-perl 151s liblwp-protocol-https-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 151s libmodule-implementation-perl libmodule-runtime-conflicts-perl 151s libmodule-runtime-perl libmoose-perl libmro-compat-perl libncbi-vdb3 151s libnet-http-perl libnet-ssleay-perl libnumber-compare-perl 151s libpackage-deprecationmanager-perl libpackage-stash-perl 151s libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 151s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 151s libparams-classify-perl libparams-util-perl libparse-yapp-perl 151s libpath-tiny-perl libperlio-utf8-strict-perl libpixman-1-0 151s libset-object-perl libsharpyuv0 libsm6 libspiffy-perl libsub-exporter-perl 151s libsub-exporter-progressive-perl libsub-install-perl libsub-uplevel-perl 151s libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl 151s libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl 151s libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl 151s libtext-glob-perl libthai-data libthai0 libtiff6 libtimedate-perl libtingea0 151s libtk8.6 libtry-tiny-perl liburi-perl libwebp7 libwww-perl 151s libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-parser-perl 151s libxml-writer-perl libxrender1 libxss1 libxt6t64 mafft mcl ncbi-blast+ 151s ncbi-data ncbi-vdb-data parallel perl-openssl-defaults prank r-base-core 151s r-cran-cli r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gtable 151s r-cran-isoband r-cran-labeling r-cran-lifecycle r-cran-r6 151s r-cran-rcolorbrewer r-cran-rlang r-cran-s7 r-cran-scales r-cran-vctrs 151s r-cran-viridislite r-cran-withr roary unzip x11-common xdg-utils zip 151s 0 upgraded, 171 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 88.1 MB of archives. 151s After this operation, 244 MB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 bedtools arm64 2.31.1+dfsg-3 [531 kB] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdata-stag-perl all 0.14-4 [364 kB] 152s Get:4 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbio-perl-perl all 1.7.8-3 [2473 kB] 156s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libclass-data-inheritable-perl all 0.10-1 [8038 B] 156s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 156s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] 156s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-simple-perl all 1.302219-1 [722 kB] 157s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-deep-perl all 1.205-1 [46.7 kB] 157s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libcapture-tiny-perl all 0.50-1 [20.7 kB] 157s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 157s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtext-diff-perl all 1.45-2 [25.6 kB] 157s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-differences-perl all 0.72-1 [15.6 kB] 157s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 157s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-exception-perl all 0.43-3 [13.4 kB] 157s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-warn-perl all 0.37-2 [12.6 kB] 157s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-most-perl all 0.38-1 [21.5 kB] 157s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 bioperl all 1.7.8-3 [201 kB] 157s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 16-20260208-1ubuntu1 [154 kB] 157s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 cd-hit arm64 4.8.1-4build1 [521 kB] 158s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 158s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 160s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 160s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 160s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 160s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] 160s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarray-utils-perl all 0.5-3 [5862 B] 160s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libb-hooks-op-check-perl arm64 0.22-3build2 [9348 B] 160s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 160s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 160s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 160s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 160s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 160s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 161s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 libclass-c3-perl all 0.35-2 [18.4 kB] 161s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libparams-util-perl arm64 1.102-3build1 [20.6 kB] 161s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libsub-install-perl all 0.929-1 [9764 B] 161s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libdata-optlist-perl all 0.114-1 [9708 B] 161s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libdynaloader-functions-perl all 0.004-2 [11.5 kB] 161s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libdevel-callchecker-perl arm64 0.009-2 [14.0 kB] 161s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libparams-classify-perl arm64 0.015-2build6 [19.8 kB] 161s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libmodule-runtime-perl all 0.018-1 [15.2 kB] 161s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libtry-tiny-perl all 0.32-1 [21.2 kB] 161s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libmodule-implementation-perl all 0.09-2 [12.0 kB] 161s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libpackage-stash-perl all 0.40-1 [19.5 kB] 161s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libclass-load-perl all 0.25-2 [12.7 kB] 161s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 libclass-load-xs-perl arm64 0.10-2build5 [13.5 kB] 161s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libclass-xsaccessor-perl arm64 1.19-4build6 [32.8 kB] 161s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libclone-perl arm64 0.47-1 [10.4 kB] 161s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libsub-exporter-perl all 0.990-1 [49.0 kB] 161s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] 161s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libconst-fast-perl all 0.014-2 [8034 B] 161s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libnumber-compare-perl all 0.03-3 [5974 B] 161s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libtext-glob-perl all 0.11-3 [6780 B] 161s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-find-rule-perl all 0.35-1build1 [24.0 kB] 161s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdata-compare-perl all 1.29-1 [17.9 kB] 161s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 161s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 161s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] 161s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmro-compat-perl all 0.15-2 [10.1 kB] 161s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdevel-overloadinfo-perl all 0.008-1 [7208 B] 161s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] 161s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] 161s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] 161s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] 161s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libhtml-tagset-perl all 3.24-1 [14.1 kB] 161s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 liburi-perl all 5.34-2build1 [100 kB] 161s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libhtml-parser-perl arm64 3.83-1build1 [85.3 kB] 161s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] 161s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-html-perl all 1.004-3 [15.9 kB] 161s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 161s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libhttp-message-perl all 7.01-1ubuntu1 [76.1 kB] 161s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 161s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 161s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 perl-openssl-defaults arm64 7build4 [6710 B] 161s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libnet-ssleay-perl arm64 1.94-3 [307 kB] 161s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-socket-ssl-perl all 2.098-1 [205 kB] 161s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libnet-http-perl all 6.24-1build1 [21.7 kB] 161s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 liblwp-protocol-https-perl all 6.14-1 [9040 B] 161s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libwww-robotrules-perl all 6.02-1build1 [12.4 kB] 161s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libwww-perl all 6.81-1build1 [141 kB] 161s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdigest-md5-file-perl all 0.08-2 [8822 B] 161s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdist-checkconflicts-perl all 0.11-2 [9942 B] 161s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libenv-path-perl all 0.19-4 [18.0 kB] 161s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libeval-closure-perl all 0.14-3 [10.1 kB] 161s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfile-chdir-perl all 0.1011-1 [10.8 kB] 161s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfile-grep-perl all 0.02-3 [8248 B] 161s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-slurper-perl all 0.014-1 [7660 B] 161s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] 161s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfindbin-libs-perl all 4.0.4-1 [24.9 kB] 161s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 16-20260208-1ubuntu1 [447 kB] 161s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libheap-perl all 0.80-5 [33.8 kB] 161s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libset-object-perl arm64 1.43-1 [33.3 kB] 161s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgraph-perl all 1:0.9735-1 [100 kB] 161s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libspiffy-perl all 0.46-1build1 [23.1 kB] 162s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libio-all-perl all 0.87-2 [61.3 kB] 162s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libparse-yapp-perl all 1.21-4 [38.0 kB] 162s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libxml-parser-perl arm64 2.47-1build4 [201 kB] 162s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxml-writer-perl all 0.900-2 [24.0 kB] 162s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgraph-readwrite-perl all 2.10-1 [44.0 kB] 162s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 162s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 162s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 162s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 162s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 162s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu12 [2142 B] 162s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 166s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 166s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblog-log4perl-perl all 1.57-1 [345 kB] 167s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.5-0.1ubuntu2 [256 kB] 167s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.5-0.1ubuntu2 [35.3 kB] 167s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.5-0.1ubuntu2 [126 kB] 167s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] 167s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] 167s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libpackage-stash-xs-perl arm64 0.30-1build5 [18.1 kB] 167s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmoose-perl arm64 2.2207-1build3 [717 kB] 168s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2build1 [81.4 kB] 168s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2build1 [1240 kB] 170s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpadwalker-perl arm64 2.5-1build7 [15.3 kB] 170s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 171s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 171s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 171s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 171s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 171s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 171s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 171s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libpath-tiny-perl all 0.148-1 [47.9 kB] 171s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libperlio-utf8-strict-perl arm64 0.010-1build4 [11.1 kB] 171s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 171s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 171s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 172s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-file-perl all 1.995-1 [21.0 kB] 172s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-files-perl all 0.26-1 [19.2 kB] 172s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtest-output-perl all 1.036-1 [14.6 kB] 172s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtext-csv-perl all 2.06-1 [113 kB] 172s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 172s Get:137 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 172s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 173s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtingea0 arm64 21-361-2build2 [54.3 kB] 173s Get:140 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 173s Get:141 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 173s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 174s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 174s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 mafft arm64 7.525-1 [826 kB] 176s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 182s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB] 209s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 prank arm64 250331-1 [310 kB] 209s Get:148 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 209s Get:149 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 209s Get:150 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 209s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 255s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 257s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 259s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 259s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 261s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 261s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 261s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 264s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 264s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 264s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 264s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 264s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 266s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 267s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 269s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 269s Get:167 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 278s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 fasttree arm64 2.1.11-2build1 [182 kB] 278s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 mcl arm64 1:22-282+ds-4build1 [519 kB] 279s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 parallel all 20240222+ds-2build1 [2116 kB] 282s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 roary all 3.13.0+dfsg-2build1 [180 kB] 283s Preconfiguring packages ... 283s Fetched 88.1 MB in 2min 11s (670 kB/s) 283s Selecting previously unselected package bedtools. 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136605 files and directories currently installed.) 283s Preparing to unpack .../000-bedtools_2.31.1+dfsg-3_arm64.deb ... 283s Unpacking bedtools (2.31.1+dfsg-3) ... 283s Selecting previously unselected package libio-string-perl. 283s Preparing to unpack .../001-libio-string-perl_1.08-4_all.deb ... 283s Unpacking libio-string-perl (1.08-4) ... 283s Selecting previously unselected package libdata-stag-perl. 283s Preparing to unpack .../002-libdata-stag-perl_0.14-4_all.deb ... 283s Unpacking libdata-stag-perl (0.14-4) ... 283s Selecting previously unselected package libbio-perl-perl. 283s Preparing to unpack .../003-libbio-perl-perl_1.7.8-3_all.deb ... 283s Unpacking libbio-perl-perl (1.7.8-3) ... 283s Selecting previously unselected package libclass-data-inheritable-perl. 283s Preparing to unpack .../004-libclass-data-inheritable-perl_0.10-1_all.deb ... 283s Unpacking libclass-data-inheritable-perl (0.10-1) ... 283s Selecting previously unselected package libdevel-stacktrace-perl. 283s Preparing to unpack .../005-libdevel-stacktrace-perl_2.0500-1_all.deb ... 283s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 283s Selecting previously unselected package libexception-class-perl. 283s Preparing to unpack .../006-libexception-class-perl_1.45-1_all.deb ... 283s Unpacking libexception-class-perl (1.45-1) ... 283s Selecting previously unselected package libtest-simple-perl. 283s Preparing to unpack .../007-libtest-simple-perl_1.302219-1_all.deb ... 283s Unpacking libtest-simple-perl (1.302219-1) ... 283s Selecting previously unselected package libtest-deep-perl. 283s Preparing to unpack .../008-libtest-deep-perl_1.205-1_all.deb ... 283s Unpacking libtest-deep-perl (1.205-1) ... 283s Selecting previously unselected package libcapture-tiny-perl. 283s Preparing to unpack .../009-libcapture-tiny-perl_0.50-1_all.deb ... 283s Unpacking libcapture-tiny-perl (0.50-1) ... 283s Selecting previously unselected package libalgorithm-diff-perl. 283s Preparing to unpack .../010-libalgorithm-diff-perl_1.201-1_all.deb ... 283s Unpacking libalgorithm-diff-perl (1.201-1) ... 283s Selecting previously unselected package libtext-diff-perl. 283s Preparing to unpack .../011-libtext-diff-perl_1.45-2_all.deb ... 283s Unpacking libtext-diff-perl (1.45-2) ... 283s Selecting previously unselected package libtest-differences-perl. 283s Preparing to unpack .../012-libtest-differences-perl_0.72-1_all.deb ... 283s Unpacking libtest-differences-perl (0.72-1) ... 283s Selecting previously unselected package libsub-uplevel-perl. 283s Preparing to unpack .../013-libsub-uplevel-perl_0.2800-3_all.deb ... 283s Unpacking libsub-uplevel-perl (0.2800-3) ... 283s Selecting previously unselected package libtest-exception-perl. 283s Preparing to unpack .../014-libtest-exception-perl_0.43-3_all.deb ... 283s Unpacking libtest-exception-perl (0.43-3) ... 283s Selecting previously unselected package libtest-warn-perl. 283s Preparing to unpack .../015-libtest-warn-perl_0.37-2_all.deb ... 283s Unpacking libtest-warn-perl (0.37-2) ... 283s Selecting previously unselected package libtest-most-perl. 283s Preparing to unpack .../016-libtest-most-perl_0.38-1_all.deb ... 283s Unpacking libtest-most-perl (0.38-1) ... 283s Selecting previously unselected package bioperl. 283s Preparing to unpack .../017-bioperl_1.7.8-3_all.deb ... 283s Unpacking bioperl (1.7.8-3) ... 283s Selecting previously unselected package libgomp1:arm64. 284s Preparing to unpack .../018-libgomp1_16-20260208-1ubuntu1_arm64.deb ... 284s Unpacking libgomp1:arm64 (16-20260208-1ubuntu1) ... 284s Selecting previously unselected package cd-hit. 284s Preparing to unpack .../019-cd-hit_4.8.1-4build1_arm64.deb ... 284s Unpacking cd-hit (4.8.1-4build1) ... 284s Selecting previously unselected package fonts-dejavu-mono. 284s Preparing to unpack .../020-fonts-dejavu-mono_2.37-8build1_all.deb ... 284s Unpacking fonts-dejavu-mono (2.37-8build1) ... 284s Selecting previously unselected package fonts-dejavu-core. 284s Preparing to unpack .../021-fonts-dejavu-core_2.37-8build1_all.deb ... 284s Unpacking fonts-dejavu-core (2.37-8build1) ... 284s Selecting previously unselected package fontconfig-config. 284s Preparing to unpack .../022-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 284s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 284s Selecting previously unselected package libfontconfig1:arm64. 284s Preparing to unpack .../023-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 284s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 284s Selecting previously unselected package fontconfig. 284s Preparing to unpack .../024-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 284s Unpacking fontconfig (2.17.1-3ubuntu1) ... 284s Selecting previously unselected package libalgorithm-c3-perl. 284s Preparing to unpack .../025-libalgorithm-c3-perl_0.11-2_all.deb ... 284s Unpacking libalgorithm-c3-perl (0.11-2) ... 284s Selecting previously unselected package libarray-utils-perl. 284s Preparing to unpack .../026-libarray-utils-perl_0.5-3_all.deb ... 284s Unpacking libarray-utils-perl (0.5-3) ... 284s Selecting previously unselected package libb-hooks-op-check-perl:arm64. 284s Preparing to unpack .../027-libb-hooks-op-check-perl_0.22-3build2_arm64.deb ... 284s Unpacking libb-hooks-op-check-perl:arm64 (0.22-3build2) ... 284s Selecting previously unselected package libblas3:arm64. 284s Preparing to unpack .../028-libblas3_3.12.1-7ubuntu1_arm64.deb ... 284s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 284s Selecting previously unselected package libpixman-1-0:arm64. 284s Preparing to unpack .../029-libpixman-1-0_0.46.4-1_arm64.deb ... 284s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 284s Selecting previously unselected package libxcb-render0:arm64. 284s Preparing to unpack .../030-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 284s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 284s Selecting previously unselected package libxcb-shm0:arm64. 284s Preparing to unpack .../031-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 284s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 284s Selecting previously unselected package libxrender1:arm64. 284s Preparing to unpack .../032-libxrender1_1%3a0.9.12-1_arm64.deb ... 284s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 284s Selecting previously unselected package libcairo2:arm64. 284s Preparing to unpack .../033-libcairo2_1.18.4-3_arm64.deb ... 284s Unpacking libcairo2:arm64 (1.18.4-3) ... 284s Selecting previously unselected package libclass-c3-perl. 284s Preparing to unpack .../034-libclass-c3-perl_0.35-2_all.deb ... 284s Unpacking libclass-c3-perl (0.35-2) ... 284s Selecting previously unselected package libparams-util-perl. 285s Preparing to unpack .../035-libparams-util-perl_1.102-3build1_arm64.deb ... 285s Unpacking libparams-util-perl (1.102-3build1) ... 285s Selecting previously unselected package libsub-install-perl. 285s Preparing to unpack .../036-libsub-install-perl_0.929-1_all.deb ... 285s Unpacking libsub-install-perl (0.929-1) ... 285s Selecting previously unselected package libdata-optlist-perl. 285s Preparing to unpack .../037-libdata-optlist-perl_0.114-1_all.deb ... 285s Unpacking libdata-optlist-perl (0.114-1) ... 285s Selecting previously unselected package libdynaloader-functions-perl. 285s Preparing to unpack .../038-libdynaloader-functions-perl_0.004-2_all.deb ... 285s Unpacking libdynaloader-functions-perl (0.004-2) ... 285s Selecting previously unselected package libdevel-callchecker-perl:arm64. 285s Preparing to unpack .../039-libdevel-callchecker-perl_0.009-2_arm64.deb ... 285s Unpacking libdevel-callchecker-perl:arm64 (0.009-2) ... 285s Selecting previously unselected package libparams-classify-perl:arm64. 285s Preparing to unpack .../040-libparams-classify-perl_0.015-2build6_arm64.deb ... 285s Unpacking libparams-classify-perl:arm64 (0.015-2build6) ... 285s Selecting previously unselected package libmodule-runtime-perl. 285s Preparing to unpack .../041-libmodule-runtime-perl_0.018-1_all.deb ... 285s Unpacking libmodule-runtime-perl (0.018-1) ... 285s Selecting previously unselected package libtry-tiny-perl. 285s Preparing to unpack .../042-libtry-tiny-perl_0.32-1_all.deb ... 285s Unpacking libtry-tiny-perl (0.32-1) ... 285s Selecting previously unselected package libmodule-implementation-perl. 285s Preparing to unpack .../043-libmodule-implementation-perl_0.09-2_all.deb ... 285s Unpacking libmodule-implementation-perl (0.09-2) ... 285s Selecting previously unselected package libpackage-stash-perl. 285s Preparing to unpack .../044-libpackage-stash-perl_0.40-1_all.deb ... 285s Unpacking libpackage-stash-perl (0.40-1) ... 285s Selecting previously unselected package libclass-load-perl. 285s Preparing to unpack .../045-libclass-load-perl_0.25-2_all.deb ... 285s Unpacking libclass-load-perl (0.25-2) ... 285s Selecting previously unselected package libclass-load-xs-perl. 285s Preparing to unpack .../046-libclass-load-xs-perl_0.10-2build5_arm64.deb ... 285s Unpacking libclass-load-xs-perl (0.10-2build5) ... 285s Selecting previously unselected package libclass-xsaccessor-perl. 285s Preparing to unpack .../047-libclass-xsaccessor-perl_1.19-4build6_arm64.deb ... 285s Unpacking libclass-xsaccessor-perl (1.19-4build6) ... 285s Selecting previously unselected package libclone-perl:arm64. 285s Preparing to unpack .../048-libclone-perl_0.47-1_arm64.deb ... 285s Unpacking libclone-perl:arm64 (0.47-1) ... 285s Selecting previously unselected package libsub-exporter-perl. 285s Preparing to unpack .../049-libsub-exporter-perl_0.990-1_all.deb ... 285s Unpacking libsub-exporter-perl (0.990-1) ... 285s Selecting previously unselected package libsub-exporter-progressive-perl. 285s Preparing to unpack .../050-libsub-exporter-progressive-perl_0.001013-3_all.deb ... 285s Unpacking libsub-exporter-progressive-perl (0.001013-3) ... 285s Selecting previously unselected package libconst-fast-perl. 285s Preparing to unpack .../051-libconst-fast-perl_0.014-2_all.deb ... 285s Unpacking libconst-fast-perl (0.014-2) ... 285s Selecting previously unselected package libnumber-compare-perl. 285s Preparing to unpack .../052-libnumber-compare-perl_0.03-3_all.deb ... 285s Unpacking libnumber-compare-perl (0.03-3) ... 285s Selecting previously unselected package libtext-glob-perl. 285s Preparing to unpack .../053-libtext-glob-perl_0.11-3_all.deb ... 285s Unpacking libtext-glob-perl (0.11-3) ... 285s Selecting previously unselected package libfile-find-rule-perl. 285s Preparing to unpack .../054-libfile-find-rule-perl_0.35-1build1_all.deb ... 285s Unpacking libfile-find-rule-perl (0.35-1build1) ... 285s Selecting previously unselected package libdata-compare-perl. 285s Preparing to unpack .../055-libdata-compare-perl_1.29-1_all.deb ... 285s Unpacking libdata-compare-perl (1.29-1) ... 285s Selecting previously unselected package libdatrie1:arm64. 285s Preparing to unpack .../056-libdatrie1_0.2.14-1_arm64.deb ... 285s Unpacking libdatrie1:arm64 (0.2.14-1) ... 285s Selecting previously unselected package libdeflate0:arm64. 285s Preparing to unpack .../057-libdeflate0_1.23-2build1_arm64.deb ... 285s Unpacking libdeflate0:arm64 (1.23-2build1) ... 285s Selecting previously unselected package libdevel-globaldestruction-perl. 285s Preparing to unpack .../058-libdevel-globaldestruction-perl_0.14-4_all.deb ... 285s Unpacking libdevel-globaldestruction-perl (0.14-4) ... 285s Selecting previously unselected package libmro-compat-perl. 285s Preparing to unpack .../059-libmro-compat-perl_0.15-2_all.deb ... 285s Unpacking libmro-compat-perl (0.15-2) ... 285s Selecting previously unselected package libdevel-overloadinfo-perl. 285s Preparing to unpack .../060-libdevel-overloadinfo-perl_0.008-1_all.deb ... 285s Unpacking libdevel-overloadinfo-perl (0.008-1) ... 285s Selecting previously unselected package libencode-locale-perl. 285s Preparing to unpack .../061-libencode-locale-perl_1.05-3_all.deb ... 285s Unpacking libencode-locale-perl (1.05-3) ... 286s Selecting previously unselected package libtimedate-perl. 286s Preparing to unpack .../062-libtimedate-perl_2.3300-2_all.deb ... 286s Unpacking libtimedate-perl (2.3300-2) ... 286s Selecting previously unselected package libhttp-date-perl. 286s Preparing to unpack .../063-libhttp-date-perl_6.06-1_all.deb ... 286s Unpacking libhttp-date-perl (6.06-1) ... 286s Selecting previously unselected package libfile-listing-perl. 286s Preparing to unpack .../064-libfile-listing-perl_6.16-1_all.deb ... 286s Unpacking libfile-listing-perl (6.16-1) ... 286s Selecting previously unselected package libhtml-tagset-perl. 286s Preparing to unpack .../065-libhtml-tagset-perl_3.24-1_all.deb ... 286s Unpacking libhtml-tagset-perl (3.24-1) ... 286s Selecting previously unselected package liburi-perl. 286s Preparing to unpack .../066-liburi-perl_5.34-2build1_all.deb ... 286s Unpacking liburi-perl (5.34-2build1) ... 286s Selecting previously unselected package libhtml-parser-perl:arm64. 286s Preparing to unpack .../067-libhtml-parser-perl_3.83-1build1_arm64.deb ... 286s Unpacking libhtml-parser-perl:arm64 (3.83-1build1) ... 286s Selecting previously unselected package libhtml-tree-perl. 286s Preparing to unpack .../068-libhtml-tree-perl_5.07-3_all.deb ... 286s Unpacking libhtml-tree-perl (5.07-3) ... 286s Selecting previously unselected package libio-html-perl. 286s Preparing to unpack .../069-libio-html-perl_1.004-3_all.deb ... 286s Unpacking libio-html-perl (1.004-3) ... 286s Selecting previously unselected package liblwp-mediatypes-perl. 286s Preparing to unpack .../070-liblwp-mediatypes-perl_6.04-2_all.deb ... 286s Unpacking liblwp-mediatypes-perl (6.04-2) ... 286s Selecting previously unselected package libhttp-message-perl. 286s Preparing to unpack .../071-libhttp-message-perl_7.01-1ubuntu1_all.deb ... 286s Unpacking libhttp-message-perl (7.01-1ubuntu1) ... 286s Selecting previously unselected package libhttp-cookies-perl. 286s Preparing to unpack .../072-libhttp-cookies-perl_6.11-1_all.deb ... 286s Unpacking libhttp-cookies-perl (6.11-1) ... 286s Selecting previously unselected package libhttp-negotiate-perl. 286s Preparing to unpack .../073-libhttp-negotiate-perl_6.01-2_all.deb ... 286s Unpacking libhttp-negotiate-perl (6.01-2) ... 286s Selecting previously unselected package perl-openssl-defaults:arm64. 286s Preparing to unpack .../074-perl-openssl-defaults_7build4_arm64.deb ... 286s Unpacking perl-openssl-defaults:arm64 (7build4) ... 286s Selecting previously unselected package libnet-ssleay-perl:arm64. 286s Preparing to unpack .../075-libnet-ssleay-perl_1.94-3_arm64.deb ... 286s Unpacking libnet-ssleay-perl:arm64 (1.94-3) ... 286s Selecting previously unselected package libio-socket-ssl-perl. 286s Preparing to unpack .../076-libio-socket-ssl-perl_2.098-1_all.deb ... 286s Unpacking libio-socket-ssl-perl (2.098-1) ... 286s Selecting previously unselected package libnet-http-perl. 286s Preparing to unpack .../077-libnet-http-perl_6.24-1build1_all.deb ... 286s Unpacking libnet-http-perl (6.24-1build1) ... 286s Selecting previously unselected package liblwp-protocol-https-perl. 286s Preparing to unpack .../078-liblwp-protocol-https-perl_6.14-1_all.deb ... 286s Unpacking liblwp-protocol-https-perl (6.14-1) ... 286s Selecting previously unselected package libwww-robotrules-perl. 286s Preparing to unpack .../079-libwww-robotrules-perl_6.02-1build1_all.deb ... 286s Unpacking libwww-robotrules-perl (6.02-1build1) ... 286s Selecting previously unselected package libwww-perl. 286s Preparing to unpack .../080-libwww-perl_6.81-1build1_all.deb ... 286s Unpacking libwww-perl (6.81-1build1) ... 286s Selecting previously unselected package libdigest-md5-file-perl. 286s Preparing to unpack .../081-libdigest-md5-file-perl_0.08-2_all.deb ... 286s Unpacking libdigest-md5-file-perl (0.08-2) ... 286s Selecting previously unselected package libdist-checkconflicts-perl. 286s Preparing to unpack .../082-libdist-checkconflicts-perl_0.11-2_all.deb ... 286s Unpacking libdist-checkconflicts-perl (0.11-2) ... 286s Selecting previously unselected package libenv-path-perl. 286s Preparing to unpack .../083-libenv-path-perl_0.19-4_all.deb ... 286s Unpacking libenv-path-perl (0.19-4) ... 286s Selecting previously unselected package libeval-closure-perl. 286s Preparing to unpack .../084-libeval-closure-perl_0.14-3_all.deb ... 286s Unpacking libeval-closure-perl (0.14-3) ... 286s Selecting previously unselected package libfile-chdir-perl. 286s Preparing to unpack .../085-libfile-chdir-perl_0.1011-1_all.deb ... 286s Unpacking libfile-chdir-perl (0.1011-1) ... 286s Selecting previously unselected package libfile-grep-perl. 286s Preparing to unpack .../086-libfile-grep-perl_0.02-3_all.deb ... 286s Unpacking libfile-grep-perl (0.02-3) ... 287s Selecting previously unselected package libfile-slurper-perl. 287s Preparing to unpack .../087-libfile-slurper-perl_0.014-1_all.deb ... 287s Unpacking libfile-slurper-perl (0.014-1) ... 287s Selecting previously unselected package libfile-which-perl. 287s Preparing to unpack .../088-libfile-which-perl_1.27-2_all.deb ... 287s Unpacking libfile-which-perl (1.27-2) ... 287s Selecting previously unselected package libfindbin-libs-perl. 287s Preparing to unpack .../089-libfindbin-libs-perl_4.0.4-1_all.deb ... 287s Unpacking libfindbin-libs-perl (4.0.4-1) ... 287s Selecting previously unselected package libgfortran5:arm64. 287s Preparing to unpack .../090-libgfortran5_16-20260208-1ubuntu1_arm64.deb ... 287s Unpacking libgfortran5:arm64 (16-20260208-1ubuntu1) ... 287s Selecting previously unselected package libheap-perl. 287s Preparing to unpack .../091-libheap-perl_0.80-5_all.deb ... 287s Unpacking libheap-perl (0.80-5) ... 287s Selecting previously unselected package libset-object-perl. 287s Preparing to unpack .../092-libset-object-perl_1.43-1_arm64.deb ... 287s Unpacking libset-object-perl (1.43-1) ... 287s Selecting previously unselected package libgraph-perl. 287s Preparing to unpack .../093-libgraph-perl_1%3a0.9735-1_all.deb ... 287s Unpacking libgraph-perl (1:0.9735-1) ... 287s Selecting previously unselected package libspiffy-perl. 287s Preparing to unpack .../094-libspiffy-perl_0.46-1build1_all.deb ... 287s Unpacking libspiffy-perl (0.46-1build1) ... 287s Selecting previously unselected package libio-all-perl. 287s Preparing to unpack .../095-libio-all-perl_0.87-2_all.deb ... 287s Unpacking libio-all-perl (0.87-2) ... 287s Selecting previously unselected package libparse-yapp-perl. 287s Preparing to unpack .../096-libparse-yapp-perl_1.21-4_all.deb ... 287s Unpacking libparse-yapp-perl (1.21-4) ... 287s Selecting previously unselected package libxml-parser-perl. 287s Preparing to unpack .../097-libxml-parser-perl_2.47-1build4_arm64.deb ... 287s Unpacking libxml-parser-perl (2.47-1build4) ... 287s Selecting previously unselected package libxml-writer-perl. 287s Preparing to unpack .../098-libxml-writer-perl_0.900-2_all.deb ... 287s Unpacking libxml-writer-perl (0.900-2) ... 287s Selecting previously unselected package libgraph-readwrite-perl. 287s Preparing to unpack .../099-libgraph-readwrite-perl_2.10-1_all.deb ... 287s Unpacking libgraph-readwrite-perl (2.10-1) ... 287s Selecting previously unselected package libgraphite2-3:arm64. 287s Preparing to unpack .../100-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 287s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 287s Selecting previously unselected package libharfbuzz0b:arm64. 287s Preparing to unpack .../101-libharfbuzz0b_12.3.2-1_arm64.deb ... 287s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 287s Selecting previously unselected package x11-common. 287s Preparing to unpack .../102-x11-common_1%3a7.7+24ubuntu1_all.deb ... 287s Unpacking x11-common (1:7.7+24ubuntu1) ... 287s Selecting previously unselected package libice6:arm64. 287s Preparing to unpack .../103-libice6_2%3a1.1.1-1build1_arm64.deb ... 287s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 287s Selecting previously unselected package libjpeg-turbo8:arm64. 287s Preparing to unpack .../104-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 287s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 287s Selecting previously unselected package libjpeg8:arm64. 287s Preparing to unpack .../105-libjpeg8_8c-2ubuntu12_arm64.deb ... 287s Unpacking libjpeg8:arm64 (8c-2ubuntu12) ... 287s Selecting previously unselected package liblapack3:arm64. 287s Preparing to unpack .../106-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 287s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 287s Selecting previously unselected package liblerc4:arm64. 287s Preparing to unpack .../107-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 287s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 287s Selecting previously unselected package liblog-log4perl-perl. 287s Preparing to unpack .../108-liblog-log4perl-perl_1.57-1_all.deb ... 287s Unpacking liblog-log4perl-perl (1.57-1) ... 287s Selecting previously unselected package libmbedcrypto16:arm64. 287s Preparing to unpack .../109-libmbedcrypto16_3.6.5-0.1ubuntu2_arm64.deb ... 287s Unpacking libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 287s Selecting previously unselected package libmbedx509-7:arm64. 288s Preparing to unpack .../110-libmbedx509-7_3.6.5-0.1ubuntu2_arm64.deb ... 288s Unpacking libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 288s Selecting previously unselected package libmbedtls21:arm64. 288s Preparing to unpack .../111-libmbedtls21_3.6.5-0.1ubuntu2_arm64.deb ... 288s Unpacking libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 288s Selecting previously unselected package libmodule-runtime-conflicts-perl. 288s Preparing to unpack .../112-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... 288s Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... 288s Selecting previously unselected package libpackage-deprecationmanager-perl. 288s Preparing to unpack .../113-libpackage-deprecationmanager-perl_0.18-1_all.deb ... 288s Unpacking libpackage-deprecationmanager-perl (0.18-1) ... 288s Selecting previously unselected package libpackage-stash-xs-perl:arm64. 288s Preparing to unpack .../114-libpackage-stash-xs-perl_0.30-1build5_arm64.deb ... 288s Unpacking libpackage-stash-xs-perl:arm64 (0.30-1build5) ... 288s Selecting previously unselected package libmoose-perl:arm64. 288s Preparing to unpack .../115-libmoose-perl_2.2207-1build3_arm64.deb ... 288s Unpacking libmoose-perl:arm64 (2.2207-1build3) ... 288s Selecting previously unselected package ncbi-vdb-data. 288s Preparing to unpack .../116-ncbi-vdb-data_3.2.1+dfsg-2build1_all.deb ... 288s Unpacking ncbi-vdb-data (3.2.1+dfsg-2build1) ... 288s Selecting previously unselected package libncbi-vdb3:arm64. 288s Preparing to unpack .../117-libncbi-vdb3_3.2.1+dfsg-2build1_arm64.deb ... 288s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2build1) ... 288s Selecting previously unselected package libpadwalker-perl. 288s Preparing to unpack .../118-libpadwalker-perl_2.5-1build7_arm64.deb ... 288s Unpacking libpadwalker-perl (2.5-1build7) ... 288s Selecting previously unselected package libthai-data. 288s Preparing to unpack .../119-libthai-data_0.1.30-1_all.deb ... 288s Unpacking libthai-data (0.1.30-1) ... 288s Selecting previously unselected package libthai0:arm64. 288s Preparing to unpack .../120-libthai0_0.1.30-1_arm64.deb ... 288s Unpacking libthai0:arm64 (0.1.30-1) ... 288s Selecting previously unselected package libpango-1.0-0:arm64. 288s Preparing to unpack .../121-libpango-1.0-0_1.57.0-1_arm64.deb ... 288s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 288s Selecting previously unselected package libpangoft2-1.0-0:arm64. 288s Preparing to unpack .../122-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 288s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 288s Selecting previously unselected package libpangocairo-1.0-0:arm64. 288s Preparing to unpack .../123-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 288s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 288s Selecting previously unselected package libpaper2:arm64. 288s Preparing to unpack .../124-libpaper2_2.2.5-0.3build1_arm64.deb ... 288s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 288s Selecting previously unselected package libpaper-utils. 288s Preparing to unpack .../125-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 288s Unpacking libpaper-utils (2.2.5-0.3build1) ... 288s Selecting previously unselected package libpath-tiny-perl. 288s Preparing to unpack .../126-libpath-tiny-perl_0.148-1_all.deb ... 288s Unpacking libpath-tiny-perl (0.148-1) ... 288s Selecting previously unselected package libperlio-utf8-strict-perl. 288s Preparing to unpack .../127-libperlio-utf8-strict-perl_0.010-1build4_arm64.deb ... 288s Unpacking libperlio-utf8-strict-perl (0.010-1build4) ... 288s Selecting previously unselected package libsharpyuv0:arm64. 288s Preparing to unpack .../128-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 288s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 288s Selecting previously unselected package libsm6:arm64. 288s Preparing to unpack .../129-libsm6_2%3a1.2.6-1build1_arm64.deb ... 288s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 288s Selecting previously unselected package libtcl8.6:arm64. 288s Preparing to unpack .../130-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 288s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 288s Selecting previously unselected package libtest-file-perl. 288s Preparing to unpack .../131-libtest-file-perl_1.995-1_all.deb ... 288s Unpacking libtest-file-perl (1.995-1) ... 288s Selecting previously unselected package libtest-files-perl. 289s Preparing to unpack .../132-libtest-files-perl_0.26-1_all.deb ... 289s Unpacking libtest-files-perl (0.26-1) ... 289s Selecting previously unselected package libtest-output-perl. 289s Preparing to unpack .../133-libtest-output-perl_1.036-1_all.deb ... 289s Unpacking libtest-output-perl (1.036-1) ... 289s Selecting previously unselected package libtext-csv-perl. 289s Preparing to unpack .../134-libtext-csv-perl_2.06-1_all.deb ... 289s Unpacking libtext-csv-perl (2.06-1) ... 289s Selecting previously unselected package libjbig0:arm64. 289s Preparing to unpack .../135-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 289s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 289s Selecting previously unselected package libwebp7:arm64. 289s Preparing to unpack .../136-libwebp7_1.5.0-0.1build1_arm64.deb ... 289s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 289s Selecting previously unselected package libtiff6:arm64. 289s Preparing to unpack .../137-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 289s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 289s Selecting previously unselected package libtingea0:arm64. 289s Preparing to unpack .../138-libtingea0_21-361-2build2_arm64.deb ... 289s Unpacking libtingea0:arm64 (21-361-2build2) ... 289s Selecting previously unselected package libxft2:arm64. 289s Preparing to unpack .../139-libxft2_2.3.6-1build2_arm64.deb ... 289s Unpacking libxft2:arm64 (2.3.6-1build2) ... 289s Selecting previously unselected package libxss1:arm64. 289s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build4_arm64.deb ... 289s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 289s Selecting previously unselected package libtk8.6:arm64. 289s Preparing to unpack .../141-libtk8.6_8.6.17-1_arm64.deb ... 289s Unpacking libtk8.6:arm64 (8.6.17-1) ... 289s Selecting previously unselected package libxt6t64:arm64. 289s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 289s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 289s Selecting previously unselected package mafft. 289s Preparing to unpack .../143-mafft_7.525-1_arm64.deb ... 289s Unpacking mafft (7.525-1) ... 289s Selecting previously unselected package ncbi-data. 289s Preparing to unpack .../144-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 289s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 289s Selecting previously unselected package ncbi-blast+. 289s Preparing to unpack .../145-ncbi-blast+_2.16.0+ds-7_arm64.deb ... 289s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 289s Selecting previously unselected package prank. 289s Preparing to unpack .../146-prank_250331-1_arm64.deb ... 289s Unpacking prank (250331-1) ... 290s Selecting previously unselected package zip. 290s Preparing to unpack .../147-zip_3.0-15ubuntu3_arm64.deb ... 290s Unpacking zip (3.0-15ubuntu3) ... 290s Selecting previously unselected package unzip. 290s Preparing to unpack .../148-unzip_6.0-29ubuntu1_arm64.deb ... 290s Unpacking unzip (6.0-29ubuntu1) ... 290s Selecting previously unselected package xdg-utils. 290s Preparing to unpack .../149-xdg-utils_1.2.1-2ubuntu2_all.deb ... 290s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 290s Selecting previously unselected package r-base-core. 290s Preparing to unpack .../150-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 290s Unpacking r-base-core (4.5.2-1ubuntu2) ... 290s Selecting previously unselected package r-cran-cli. 290s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 290s Unpacking r-cran-cli (3.6.4-1) ... 290s Selecting previously unselected package r-cran-farver. 290s Preparing to unpack .../152-r-cran-farver_2.1.2-1_arm64.deb ... 290s Unpacking r-cran-farver (2.1.2-1) ... 290s Selecting previously unselected package r-cran-glue. 290s Preparing to unpack .../153-r-cran-glue_1.8.0-1_arm64.deb ... 290s Unpacking r-cran-glue (1.8.0-1) ... 290s Selecting previously unselected package r-cran-rlang. 290s Preparing to unpack .../154-r-cran-rlang_1.1.5-3_arm64.deb ... 290s Unpacking r-cran-rlang (1.1.5-3) ... 290s Selecting previously unselected package r-cran-lifecycle. 290s Preparing to unpack .../155-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 290s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 290s Selecting previously unselected package r-cran-gtable. 290s Preparing to unpack .../156-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 290s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 290s Selecting previously unselected package r-cran-isoband. 290s Preparing to unpack .../157-r-cran-isoband_0.2.7-1_arm64.deb ... 290s Unpacking r-cran-isoband (0.2.7-1) ... 290s Selecting previously unselected package r-cran-s7. 290s Preparing to unpack .../158-r-cran-s7_0.2.0-1_arm64.deb ... 290s Unpacking r-cran-s7 (0.2.0-1) ... 290s Selecting previously unselected package r-cran-labeling. 290s Preparing to unpack .../159-r-cran-labeling_0.4.3-1_all.deb ... 290s Unpacking r-cran-labeling (0.4.3-1) ... 290s Selecting previously unselected package r-cran-r6. 290s Preparing to unpack .../160-r-cran-r6_2.6.1-1_all.deb ... 290s Unpacking r-cran-r6 (2.6.1-1) ... 290s Selecting previously unselected package r-cran-rcolorbrewer. 290s Preparing to unpack .../161-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 290s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 290s Selecting previously unselected package r-cran-viridislite. 290s Preparing to unpack .../162-r-cran-viridislite_0.4.3-1_all.deb ... 290s Unpacking r-cran-viridislite (0.4.3-1) ... 291s Selecting previously unselected package r-cran-scales. 291s Preparing to unpack .../163-r-cran-scales_1.4.0-1_all.deb ... 291s Unpacking r-cran-scales (1.4.0-1) ... 291s Selecting previously unselected package r-cran-vctrs. 291s Preparing to unpack .../164-r-cran-vctrs_0.6.5-1_arm64.deb ... 291s Unpacking r-cran-vctrs (0.6.5-1) ... 291s Selecting previously unselected package r-cran-withr. 291s Preparing to unpack .../165-r-cran-withr_3.0.2+dfsg-1_all.deb ... 291s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 291s Selecting previously unselected package r-cran-ggplot2. 291s Preparing to unpack .../166-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 291s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 291s Selecting previously unselected package fasttree. 291s Preparing to unpack .../167-fasttree_2.1.11-2build1_arm64.deb ... 291s Unpacking fasttree (2.1.11-2build1) ... 291s Selecting previously unselected package mcl. 291s Preparing to unpack .../168-mcl_1%3a22-282+ds-4build1_arm64.deb ... 291s Unpacking mcl (1:22-282+ds-4build1) ... 291s Selecting previously unselected package parallel. 291s Preparing to unpack .../169-parallel_20240222+ds-2build1_all.deb ... 291s Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' 291s Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' 291s Unpacking parallel (20240222+ds-2build1) ... 291s Selecting previously unselected package roary. 291s Preparing to unpack .../170-roary_3.13.0+dfsg-2build1_all.deb ... 291s Unpacking roary (3.13.0+dfsg-2build1) ... 291s Setting up libarray-utils-perl (0.5-3) ... 291s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 291s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 291s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 291s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 291s Setting up libfile-slurper-perl (0.014-1) ... 291s Setting up libfile-which-perl (1.27-2) ... 291s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 291s Setting up libparse-yapp-perl (1.21-4) ... 291s Setting up libxrender1:arm64 (1:0.9.12-1) ... 291s Setting up libdynaloader-functions-perl (0.004-2) ... 291s Setting up libdatrie1:arm64 (0.2.14-1) ... 291s Setting up libtext-glob-perl (0.11-3) ... 291s Setting up libtest-deep-perl (1.205-1) ... 291s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 291s Setting up mafft (7.525-1) ... 291s Setting up libclone-perl:arm64 (0.47-1) ... 291s Setting up libalgorithm-diff-perl (1.201-1) ... 291s Setting up libhtml-tagset-perl (3.24-1) ... 291s Setting up libtest-file-perl (1.995-1) ... 291s Setting up unzip (6.0-29ubuntu1) ... 291s Setting up libheap-perl (0.80-5) ... 291s Setting up liblwp-mediatypes-perl (6.04-2) ... 291s Setting up x11-common (1:7.7+24ubuntu1) ... 291s Setting up libtry-tiny-perl (0.32-1) ... 291s Setting up libdeflate0:arm64 (1.23-2build1) ... 291s Setting up perl-openssl-defaults:arm64 (7build4) ... 291s Setting up libpadwalker-perl (2.5-1build7) ... 291s Setting up libencode-locale-perl (1.05-3) ... 291s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 291s Setting up libfindbin-libs-perl (4.0.4-1) ... 291s Setting up libgomp1:arm64 (16-20260208-1ubuntu1) ... 291s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 291s Setting up libsub-install-perl (0.929-1) ... 291s Setting up libnumber-compare-perl (0.03-3) ... 291s Setting up libio-string-perl (1.08-4) ... 291s Setting up zip (3.0-15ubuntu3) ... 291s Setting up libpackage-stash-xs-perl:arm64 (0.30-1build5) ... 291s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 291s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 291s Setting up libclass-data-inheritable-perl (0.10-1) ... 291s Setting up libalgorithm-c3-perl (0.11-2) ... 291s Setting up libset-object-perl (1.43-1) ... 291s Setting up liblog-log4perl-perl (1.57-1) ... 291s Setting up libtext-diff-perl (1.45-2) ... 291s Setting up libfile-find-rule-perl (0.35-1build1) ... 291s Setting up libperlio-utf8-strict-perl (0.010-1build4) ... 291s Setting up libxml-writer-perl (0.900-2) ... 291s Setting up libenv-path-perl (0.19-4) ... 291s Setting up fonts-dejavu-mono (2.37-8build1) ... 291s Setting up libio-html-perl (1.004-3) ... 291s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 291s Setting up libb-hooks-op-check-perl:arm64 (0.22-3build2) ... 291s Setting up libfile-grep-perl (0.02-3) ... 291s Setting up fonts-dejavu-core (2.37-8build1) ... 291s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 291s Setting up libparams-util-perl (1.102-3build1) ... 291s Setting up parallel (20240222+ds-2build1) ... 291s Setting up libspiffy-perl (0.46-1build1) ... 291s Setting up libgfortran5:arm64 (16-20260208-1ubuntu1) ... 291s Setting up libsub-exporter-progressive-perl (0.001013-3) ... 291s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 291s Setting up libcapture-tiny-perl (0.50-1) ... 291s Setting up libtimedate-perl (2.3300-2) ... 291s Setting up libdata-stag-perl (0.14-4) ... 291s Setting up libfile-chdir-perl (0.1011-1) ... 291s Setting up libpath-tiny-perl (0.148-1) ... 291s Setting up libtingea0:arm64 (21-361-2build2) ... 291s Setting up libsub-uplevel-perl (0.2800-3) ... 291s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 291s Setting up ncbi-vdb-data (3.2.1+dfsg-2build1) ... 292s Setting up libthai-data (0.1.30-1) ... 292s Setting up libdevel-globaldestruction-perl (0.14-4) ... 292s Setting up fasttree (2.1.11-2build1) ... 292s Setting up libdevel-stacktrace-perl (2.0500-1) ... 292s Setting up libclass-xsaccessor-perl (1.19-4build6) ... 292s Setting up libbio-perl-perl (1.7.8-3) ... 292s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 292s Setting up libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 292s Setting up libpaper2:arm64 (2.2.5-0.3build1) ... 292s Setting up xdg-utils (1.2.1-2ubuntu2) ... 292s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 292s Setting up bedtools (2.31.1+dfsg-3) ... 292s Setting up liburi-perl (5.34-2build1) ... 292s Setting up libtest-simple-perl (1.302219-1) ... 292s Setting up prank (250331-1) ... 292s Setting up libtext-csv-perl (2.06-1) ... 292s Setting up libnet-ssleay-perl:arm64 (1.94-3) ... 292s Setting up cd-hit (4.8.1-4build1) ... 292s Setting up libjpeg8:arm64 (8c-2ubuntu12) ... 292s Setting up libice6:arm64 (2:1.1.1-1build1) ... 292s Setting up libhttp-date-perl (6.06-1) ... 292s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 292s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 292s Setting up libfile-listing-perl (6.16-1) ... 292s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 292s Setting up libtest-warn-perl (0.37-2) ... 292s Setting up libtest-differences-perl (0.72-1) ... 292s Setting up libnet-http-perl (6.24-1build1) ... 292s Setting up libexception-class-perl (1.45-1) ... 292s Setting up libpaper-utils (2.2.5-0.3build1) ... 292s Setting up libio-all-perl (0.87-2) ... 292s Setting up libclass-c3-perl (0.35-2) ... 292s Setting up libgraph-perl (1:0.9735-1) ... 292s Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... 292s Setting up libdata-compare-perl (1.29-1) ... 292s Setting up libthai0:arm64 (0.1.30-1) ... 292s Setting up libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 292s Setting up libtest-exception-perl (0.43-3) ... 292s Setting up mcl (1:22-282+ds-4build1) ... 292s Setting up libdata-optlist-perl (0.114-1) ... 292s Setting up libtest-output-perl (1.036-1) ... 292s Setting up libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 292s Setting up libwww-robotrules-perl (6.02-1build1) ... 292s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 292s Setting up libhtml-parser-perl:arm64 (3.83-1build1) ... 292s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 292s Setting up libmro-compat-perl (0.15-2) ... 292s Setting up libsm6:arm64 (2:1.2.6-1build1) ... 292s Setting up libio-socket-ssl-perl (2.098-1) ... 292s Setting up libsub-exporter-perl (0.990-1) ... 292s Setting up libhttp-message-perl (7.01-1ubuntu1) ... 292s Setting up libeval-closure-perl (0.14-3) ... 292s Setting up libhttp-negotiate-perl (6.01-2) ... 292s Setting up fontconfig (2.17.1-3ubuntu1) ... 294s Regenerating fonts cache... done. 294s Setting up libxft2:arm64 (2.3.6-1build2) ... 294s Setting up libhttp-cookies-perl (6.11-1) ... 294s Setting up libtest-most-perl (0.38-1) ... 294s Setting up libhtml-tree-perl (5.07-3) ... 294s Setting up libtk8.6:arm64 (8.6.17-1) ... 294s Setting up libparams-classify-perl:arm64 (0.015-2build6) ... 294s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 294s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2build1) ... 294s Setting up libcairo2:arm64 (1.18.4-3) ... 294s Setting up ncbi-blast+ (2.16.0+ds-7) ... 294s Setting up libmodule-runtime-perl (0.018-1) ... 294s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 294s Setting up libdist-checkconflicts-perl (0.11-2) ... 294s Setting up libconst-fast-perl (0.014-2) ... 294s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 294s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 294s Setting up bioperl (1.7.8-3) ... 294s Setting up libmodule-implementation-perl (0.09-2) ... 294s Setting up libpackage-stash-perl (0.40-1) ... 294s Setting up libmodule-runtime-conflicts-perl (0.003-2) ... 294s Setting up libtest-files-perl (0.26-1) ... 294s Setting up libclass-load-perl (0.25-2) ... 294s Setting up r-base-core (4.5.2-1ubuntu2) ... 294s Creating config file /etc/R/Renviron with new version 294s Setting up r-cran-labeling (0.4.3-1) ... 294s Setting up r-cran-farver (2.1.2-1) ... 294s Setting up libpackage-deprecationmanager-perl (0.18-1) ... 294s Setting up r-cran-viridislite (0.4.3-1) ... 294s Setting up libdevel-overloadinfo-perl (0.008-1) ... 294s Setting up libclass-load-xs-perl (0.10-2build5) ... 294s Setting up r-cran-r6 (2.6.1-1) ... 294s Setting up r-cran-rlang (1.1.5-3) ... 294s Setting up r-cran-withr (3.0.2+dfsg-1) ... 294s Setting up libmoose-perl:arm64 (2.2207-1build3) ... 294s Setting up r-cran-glue (1.8.0-1) ... 294s Setting up r-cran-cli (3.6.4-1) ... 294s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 294s Setting up r-cran-s7 (0.2.0-1) ... 294s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 294s Setting up r-cran-isoband (0.2.7-1) ... 294s Setting up r-cran-scales (1.4.0-1) ... 294s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 294s Setting up r-cran-vctrs (0.6.5-1) ... 294s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... 294s Setting up liblwp-protocol-https-perl (6.14-1) ... 294s Setting up libwww-perl (6.81-1build1) ... 294s Setting up libdigest-md5-file-perl (0.08-2) ... 294s Setting up libxml-parser-perl (2.47-1build4) ... 294s Setting up libgraph-readwrite-perl (2.10-1) ... 294s Setting up roary (3.13.0+dfsg-2build1) ... 294s Processing triggers for install-info (7.2-5) ... 294s Processing triggers for libc-bin (2.42-2ubuntu4) ... 294s Processing triggers for man-db (2.13.1-1build1) ... 296s autopkgtest [00:23:44]: test run-unit-test: [----------------------- 297s 297s Please cite Roary if you use any of the results it produces: 297s Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill, 297s "Roary: Rapid large-scale prokaryote pan genome analysis", Bioinformatics, 2015 Nov 15;31(22):3691-3693 297s doi: http://doi.org/10.1093/bioinformatics/btv421 297s Pubmed: 26198102 297s 300s autopkgtest [00:23:48]: test run-unit-test: -----------------------] 301s autopkgtest [00:23:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 301s run-unit-test PASS 301s autopkgtest [00:23:49]: @@@@@@@@@@@@@@@@@@@@ summary 301s run-unit-test PASS