0s autopkgtest [00:07:32]: starting date and time: 2026-02-10 00:07:32+0000 0s autopkgtest [00:07:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:07:32]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.49qprdzt/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-6.secgroup --name adt-resolute-arm64-r-cran-sctransform-20260210-000732-juju-7f2275-prod-proposed-migration-environment-20-1584a65f-7059-4b6c-b470-da22c0b43cee --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-r-cran-sctransform-20260210-000732-juju-7f2275-prod-proposed-migration-environment-20-1584a65f-7059-4b6c-b470-da22c0b43cee from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 113s autopkgtest [00:09:25]: testbed dpkg architecture: arm64 113s autopkgtest [00:09:25]: testbed apt version: 3.1.15 113s autopkgtest [00:09:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s autopkgtest [00:09:25]: testbed release detected to be: None 114s autopkgtest [00:09:26]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 115s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 115s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 118s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 118s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 118s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 118s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 122s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 122s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 122s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 123s Fetched 3862 kB in 8s (504 kB/s) 124s Reading package lists... 125s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 126s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Calculating upgrade... 126s The following packages will be upgraded: 126s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 126s libip6tc2 libxtables12 wget 126s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 2534 kB of archives. 126s After this operation, 18.4 kB of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 126s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 126s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 126s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 126s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 129s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 129s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 129s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 129s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 129s dpkg-preconfigure: unable to re-open stdin: No such file or directory 129s Fetched 2534 kB in 3s (951 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 130s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 130s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 130s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 130s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 130s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 130s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 130s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 130s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 130s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 130s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 130s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 130s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 130s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 130s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 131s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 131s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 131s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 131s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 131s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 131s Setting up wget (1.25.0-2ubuntu4) ... 131s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 131s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 131s Setting up dracut-install (109-11ubuntu1) ... 131s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 131s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 131s Setting up iptables (1.8.11-2ubuntu3) ... 131s Setting up iproute2 (6.18.0-1ubuntu1) ... 131s Processing triggers for man-db (2.13.1-1build1) ... 132s Processing triggers for install-info (7.2-5) ... 132s Processing triggers for libc-bin (2.42-2ubuntu4) ... 132s autopkgtest [00:09:44]: upgrading testbed (apt dist-upgrade and autopurge) 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Solving dependencies... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s autopkgtest [00:09:48]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 137s autopkgtest [00:09:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform 138s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B] 138s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB] 138s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B] 138s gpgv: Signature made Wed Nov 1 07:12:04 2023 UTC 138s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 138s gpgv: issuer "tille@debian.org" 138s gpgv: Can't check signature: No public key 138s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found 138s autopkgtest [00:09:50]: testing package r-cran-sctransform version 0.4.1-1 138s autopkgtest [00:09:50]: build not needed 140s autopkgtest [00:09:52]: test run-unit-test: preparing testbed 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Solving dependencies... 141s The following NEW packages will be installed: 141s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 141s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 141s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 141s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 141s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 141s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 141s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 141s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 141s libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core 141s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-crayon 141s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate 141s r-cran-fansi r-cran-farver r-cran-fs r-cran-future r-cran-future.apply 141s r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 141s r-cran-gtable r-cran-highr r-cran-irlba r-cran-isoband r-cran-jsonlite 141s r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-listenv 141s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 141s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 141s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 141s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 141s r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-s7 r-cran-scales 141s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 141s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 141s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 141s zip 141s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 90.5 MB of archives. 141s After this operation, 217 MB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 141s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 143s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 143s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 143s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 143s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 143s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 146s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 146s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 146s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 146s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 146s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 146s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 147s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 147s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 147s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 147s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 147s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 147s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 147s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 147s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 147s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 147s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 147s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 147s Get:25 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 147s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 147s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 147s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 151s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 151s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 151s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 151s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 151s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 151s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 151s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 151s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 151s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 151s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 151s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 153s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 153s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 153s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 153s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 153s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 153s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 154s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 154s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 154s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 154s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 154s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 154s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 200s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 200s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 200s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 200s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 200s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 200s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 203s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 203s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 203s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 203s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 205s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 205s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB] 205s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 205s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 208s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 208s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 208s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 208s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 211s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 211s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 213s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 213s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 213s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 213s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 213s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 216s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 216s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 218s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 218s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-globals all 0.19.0-1 [160 kB] 218s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 218s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB] 219s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 220s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 220s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 220s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 222s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 222s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 222s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 222s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 224s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 225s Get:92 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 233s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridextra all 2.3-3build2 [1032 kB] 234s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 235s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 235s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 238s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 244s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-irlba arm64 2.3.5.1-4 [295 kB] 244s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 245s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 245s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 256s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 257s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 257s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 259s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 259s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 259s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 259s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 259s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 259s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 262s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 264s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 264s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpparmadillo arm64 15.2.3-1-1 [916 kB] 265s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 267s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 267s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB] 267s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sctransform arm64 0.4.1-1 [496 kB] 267s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 267s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 270s Preconfiguring packages ... 270s Fetched 90.5 MB in 2min 8s (705 kB/s) 270s Selecting previously unselected package fonts-dejavu-mono. 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 270s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 270s Unpacking fonts-dejavu-mono (2.37-8build1) ... 270s Selecting previously unselected package fonts-dejavu-core. 270s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 270s Unpacking fonts-dejavu-core (2.37-8build1) ... 270s Selecting previously unselected package fontconfig-config. 270s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 270s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 270s Selecting previously unselected package libfontconfig1:arm64. 270s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 270s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 270s Selecting previously unselected package fontconfig. 270s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 270s Unpacking fontconfig (2.17.1-3ubuntu1) ... 270s Selecting previously unselected package fonts-glyphicons-halflings. 270s Preparing to unpack .../005-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 270s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 270s Selecting previously unselected package fonts-mathjax. 270s Preparing to unpack .../006-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 270s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 270s Selecting previously unselected package libblas3:arm64. 270s Preparing to unpack .../007-libblas3_3.12.1-7ubuntu1_arm64.deb ... 270s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 270s Selecting previously unselected package libpixman-1-0:arm64. 270s Preparing to unpack .../008-libpixman-1-0_0.46.4-1_arm64.deb ... 270s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 270s Selecting previously unselected package libxcb-render0:arm64. 270s Preparing to unpack .../009-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 270s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 270s Selecting previously unselected package libxcb-shm0:arm64. 270s Preparing to unpack .../010-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 270s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 270s Selecting previously unselected package libxrender1:arm64. 270s Preparing to unpack .../011-libxrender1_1%3a0.9.12-1_arm64.deb ... 270s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 270s Selecting previously unselected package libcairo2:arm64. 270s Preparing to unpack .../012-libcairo2_1.18.4-3_arm64.deb ... 270s Unpacking libcairo2:arm64 (1.18.4-3) ... 271s Selecting previously unselected package libdatrie1:arm64. 271s Preparing to unpack .../013-libdatrie1_0.2.14-1_arm64.deb ... 271s Unpacking libdatrie1:arm64 (0.2.14-1) ... 271s Selecting previously unselected package libdeflate0:arm64. 271s Preparing to unpack .../014-libdeflate0_1.23-2build1_arm64.deb ... 271s Unpacking libdeflate0:arm64 (1.23-2build1) ... 271s Selecting previously unselected package libgfortran5:arm64. 271s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 271s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 271s Selecting previously unselected package libgomp1:arm64. 271s Preparing to unpack .../016-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 271s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 271s Selecting previously unselected package libgraphite2-3:arm64. 271s Preparing to unpack .../017-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 271s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 271s Selecting previously unselected package libharfbuzz0b:arm64. 271s Preparing to unpack .../018-libharfbuzz0b_12.3.2-1_arm64.deb ... 271s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 271s Selecting previously unselected package x11-common. 271s Preparing to unpack .../019-x11-common_1%3a7.7+24ubuntu1_all.deb ... 271s Unpacking x11-common (1:7.7+24ubuntu1) ... 271s Selecting previously unselected package libice6:arm64. 271s Preparing to unpack .../020-libice6_2%3a1.1.1-1build1_arm64.deb ... 271s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 271s Selecting previously unselected package libjpeg-turbo8:arm64. 271s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 271s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 271s Selecting previously unselected package libjpeg8:arm64. 271s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_arm64.deb ... 271s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 271s Selecting previously unselected package libjs-bootstrap. 271s Preparing to unpack .../023-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 271s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 271s Selecting previously unselected package libjs-highlight.js. 271s Preparing to unpack .../024-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 271s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 271s Selecting previously unselected package libjs-jquery. 271s Preparing to unpack .../025-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 271s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 271s Selecting previously unselected package libjs-jquery-datatables. 271s Preparing to unpack .../026-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 271s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 271s Selecting previously unselected package liblapack3:arm64. 271s Preparing to unpack .../027-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 271s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 271s Selecting previously unselected package liblerc4:arm64. 271s Preparing to unpack .../028-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 271s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 271s Selecting previously unselected package libthai-data. 271s Preparing to unpack .../029-libthai-data_0.1.30-1_all.deb ... 271s Unpacking libthai-data (0.1.30-1) ... 271s Selecting previously unselected package libthai0:arm64. 271s Preparing to unpack .../030-libthai0_0.1.30-1_arm64.deb ... 271s Unpacking libthai0:arm64 (0.1.30-1) ... 271s Selecting previously unselected package libpango-1.0-0:arm64. 271s Preparing to unpack .../031-libpango-1.0-0_1.57.0-1_arm64.deb ... 271s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 271s Selecting previously unselected package libpangoft2-1.0-0:arm64. 271s Preparing to unpack .../032-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 271s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 271s Selecting previously unselected package libpangocairo-1.0-0:arm64. 271s Preparing to unpack .../033-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 271s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 271s Selecting previously unselected package libpaper2:arm64. 271s Preparing to unpack .../034-libpaper2_2.2.5-0.3build1_arm64.deb ... 271s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 271s Selecting previously unselected package libpaper-utils. 271s Preparing to unpack .../035-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 271s Unpacking libpaper-utils (2.2.5-0.3build1) ... 272s Selecting previously unselected package libsharpyuv0:arm64. 272s Preparing to unpack .../036-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 272s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 272s Selecting previously unselected package libsm6:arm64. 272s Preparing to unpack .../037-libsm6_2%3a1.2.6-1build1_arm64.deb ... 272s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 272s Selecting previously unselected package libtcl8.6:arm64. 272s Preparing to unpack .../038-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 272s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 272s Selecting previously unselected package libjbig0:arm64. 272s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 272s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 272s Selecting previously unselected package libwebp7:arm64. 272s Preparing to unpack .../040-libwebp7_1.5.0-0.1build1_arm64.deb ... 272s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 272s Selecting previously unselected package libtiff6:arm64. 272s Preparing to unpack .../041-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 272s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 272s Selecting previously unselected package libxft2:arm64. 272s Preparing to unpack .../042-libxft2_2.3.6-1build2_arm64.deb ... 272s Unpacking libxft2:arm64 (2.3.6-1build2) ... 272s Selecting previously unselected package libxss1:arm64. 272s Preparing to unpack .../043-libxss1_1%3a1.2.3-1build4_arm64.deb ... 272s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 272s Selecting previously unselected package libtk8.6:arm64. 272s Preparing to unpack .../044-libtk8.6_8.6.17-1_arm64.deb ... 272s Unpacking libtk8.6:arm64 (8.6.17-1) ... 272s Selecting previously unselected package libxt6t64:arm64. 272s Preparing to unpack .../045-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 272s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 272s Selecting previously unselected package node-normalize.css. 272s Preparing to unpack .../046-node-normalize.css_8.0.1-5.1_all.deb ... 272s Unpacking node-normalize.css (8.0.1-5.1) ... 272s Selecting previously unselected package zip. 272s Preparing to unpack .../047-zip_3.0-15ubuntu3_arm64.deb ... 272s Unpacking zip (3.0-15ubuntu3) ... 272s Selecting previously unselected package unzip. 272s Preparing to unpack .../048-unzip_6.0-29ubuntu1_arm64.deb ... 272s Unpacking unzip (6.0-29ubuntu1) ... 272s Selecting previously unselected package xdg-utils. 272s Preparing to unpack .../049-xdg-utils_1.2.1-2ubuntu2_all.deb ... 272s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 272s Selecting previously unselected package r-base-core. 272s Preparing to unpack .../050-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 272s Unpacking r-base-core (4.5.2-1ubuntu2) ... 272s Selecting previously unselected package r-cran-brio. 272s Preparing to unpack .../051-r-cran-brio_1.1.5-1_arm64.deb ... 272s Unpacking r-cran-brio (1.1.5-1) ... 272s Selecting previously unselected package r-cran-ps. 272s Preparing to unpack .../052-r-cran-ps_1.9.0-1_arm64.deb ... 272s Unpacking r-cran-ps (1.9.0-1) ... 272s Selecting previously unselected package r-cran-r6. 272s Preparing to unpack .../053-r-cran-r6_2.6.1-1_all.deb ... 272s Unpacking r-cran-r6 (2.6.1-1) ... 272s Selecting previously unselected package r-cran-processx. 273s Preparing to unpack .../054-r-cran-processx_3.8.6-1_arm64.deb ... 273s Unpacking r-cran-processx (3.8.6-1) ... 273s Selecting previously unselected package r-cran-callr. 273s Preparing to unpack .../055-r-cran-callr_3.7.6-1_all.deb ... 273s Unpacking r-cran-callr (3.7.6-1) ... 273s Selecting previously unselected package r-cran-cli. 273s Preparing to unpack .../056-r-cran-cli_3.6.4-1_arm64.deb ... 273s Unpacking r-cran-cli (3.6.4-1) ... 273s Selecting previously unselected package r-cran-codetools. 273s Preparing to unpack .../057-r-cran-codetools_0.2-20-1build1_all.deb ... 273s Unpacking r-cran-codetools (0.2-20-1build1) ... 273s Selecting previously unselected package r-cran-crayon. 273s Preparing to unpack .../058-r-cran-crayon_1.5.3-1_all.deb ... 273s Unpacking r-cran-crayon (1.5.3-1) ... 273s Selecting previously unselected package r-cran-desc. 273s Preparing to unpack .../059-r-cran-desc_1.4.3-1_all.deb ... 273s Unpacking r-cran-desc (1.4.3-1) ... 273s Selecting previously unselected package r-cran-diffobj. 273s Preparing to unpack .../060-r-cran-diffobj_0.3.5-1build1_arm64.deb ... 273s Unpacking r-cran-diffobj (0.3.5-1build1) ... 273s Selecting previously unselected package r-cran-digest. 273s Preparing to unpack .../061-r-cran-digest_0.6.39-1_arm64.deb ... 273s Unpacking r-cran-digest (0.6.39-1) ... 273s Selecting previously unselected package r-cran-generics. 273s Preparing to unpack .../062-r-cran-generics_0.1.4-1_all.deb ... 273s Unpacking r-cran-generics (0.1.4-1) ... 273s Selecting previously unselected package r-cran-glue. 273s Preparing to unpack .../063-r-cran-glue_1.8.0-1_arm64.deb ... 273s Unpacking r-cran-glue (1.8.0-1) ... 273s Selecting previously unselected package r-cran-rlang. 273s Preparing to unpack .../064-r-cran-rlang_1.1.5-3_arm64.deb ... 273s Unpacking r-cran-rlang (1.1.5-3) ... 273s Selecting previously unselected package r-cran-lifecycle. 273s Preparing to unpack .../065-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 273s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 273s Selecting previously unselected package r-cran-magrittr. 273s Preparing to unpack .../066-r-cran-magrittr_2.0.3-1_arm64.deb ... 273s Unpacking r-cran-magrittr (2.0.3-1) ... 273s Selecting previously unselected package r-cran-utf8. 273s Preparing to unpack .../067-r-cran-utf8_1.2.4-1_arm64.deb ... 273s Unpacking r-cran-utf8 (1.2.4-1) ... 273s Selecting previously unselected package r-cran-vctrs. 273s Preparing to unpack .../068-r-cran-vctrs_0.6.5-1_arm64.deb ... 273s Unpacking r-cran-vctrs (0.6.5-1) ... 273s Selecting previously unselected package r-cran-pillar. 273s Preparing to unpack .../069-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 273s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 273s Selecting previously unselected package r-cran-fansi. 273s Preparing to unpack .../070-r-cran-fansi_1.0.6-2_arm64.deb ... 273s Unpacking r-cran-fansi (1.0.6-2) ... 273s Selecting previously unselected package r-cran-pkgconfig. 273s Preparing to unpack .../071-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 273s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 273s Selecting previously unselected package r-cran-tibble. 273s Preparing to unpack .../072-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 273s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 273s Selecting previously unselected package r-cran-withr. 273s Preparing to unpack .../073-r-cran-withr_3.0.2+dfsg-1_all.deb ... 273s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 273s Selecting previously unselected package r-cran-tidyselect. 273s Preparing to unpack .../074-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 273s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 273s Selecting previously unselected package r-cran-dplyr. 274s Preparing to unpack .../075-r-cran-dplyr_1.1.4-4_arm64.deb ... 274s Unpacking r-cran-dplyr (1.1.4-4) ... 274s Selecting previously unselected package r-cran-evaluate. 274s Preparing to unpack .../076-r-cran-evaluate_1.0.5-1_all.deb ... 274s Unpacking r-cran-evaluate (1.0.5-1) ... 274s Selecting previously unselected package r-cran-farver. 274s Preparing to unpack .../077-r-cran-farver_2.1.2-1_arm64.deb ... 274s Unpacking r-cran-farver (2.1.2-1) ... 274s Selecting previously unselected package r-cran-fs. 274s Preparing to unpack .../078-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 274s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 274s Selecting previously unselected package r-cran-globals. 274s Preparing to unpack .../079-r-cran-globals_0.19.0-1_all.deb ... 274s Unpacking r-cran-globals (0.19.0-1) ... 274s Selecting previously unselected package r-cran-listenv. 274s Preparing to unpack .../080-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 274s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 274s Selecting previously unselected package r-cran-parallelly. 274s Preparing to unpack .../081-r-cran-parallelly_1.42.0-1_arm64.deb ... 274s Unpacking r-cran-parallelly (1.42.0-1) ... 274s Selecting previously unselected package r-cran-future. 274s Preparing to unpack .../082-r-cran-future_1.34.0+dfsg-1_all.deb ... 274s Unpacking r-cran-future (1.34.0+dfsg-1) ... 274s Selecting previously unselected package r-cran-future.apply. 274s Preparing to unpack .../083-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 274s Unpacking 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run-unit-test: [----------------------- 281s BEGIN TEST testthat.R 281s 281s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 281s Copyright (C) 2025 The R Foundation for Statistical Computing 281s Platform: aarch64-unknown-linux-gnu 281s 281s R is free software and comes with ABSOLUTELY NO WARRANTY. 281s You are welcome to redistribute it under certain conditions. 281s Type 'license()' or 'licence()' for distribution details. 281s 281s R is a collaborative project with many contributors. 281s Type 'contributors()' for more information and 281s 'citation()' on how to cite R or R packages in publications. 281s 281s Type 'demo()' for some demos, 'help()' for on-line help, or 281s 'help.start()' for an HTML browser interface to help. 281s Type 'q()' to quit R. 281s 281s > library(testthat) 281s > library(sctransform) 283s > 283s > test_check("sctransform") 283s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 283s 283s ══ Skipped tests (10) ══════════════════════════════════════════════════════════ 283s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3', 283s 'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3', 283s 'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3', 283s 'test_vst.R:46:3' 283s 283s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 283s > 284s autopkgtest [00:12:16]: test run-unit-test: -----------------------] 284s autopkgtest [00:12:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 284s run-unit-test PASS 284s autopkgtest [00:12:16]: test pkg-r-autopkgtest: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Solving dependencies... 285s The following NEW packages will be installed: 285s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 285s dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 285s gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 285s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 285s libasan8 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 285s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 285s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 285s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 285s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 285s libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev linux-libc-dev 285s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 285s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 285s Need to get 103 MB of archives. 285s After this operation, 377 MB of additional disk space will be used. 285s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 286s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 289s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 289s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 289s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 292s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 293s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 293s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 311s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 311s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 311s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 311s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 311s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 311s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 315s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 317s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 321s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 322s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 325s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 329s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 364s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 364s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 364s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 364s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 368s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 389s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 389s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 389s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 389s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 389s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 389s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 389s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 408s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 408s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 408s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 408s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 408s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 408s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 408s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 408s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 435s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 435s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 435s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 435s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 441s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 441s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 441s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 441s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 441s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 443s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 443s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 444s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 444s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 444s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 444s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 444s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 444s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 444s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 444s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 444s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 445s Fetched 103 MB in 2min 39s (647 kB/s) 445s Selecting previously unselected package libc-dev-bin. 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 152402 files and directories currently installed.) 445s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 445s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 445s Selecting previously unselected package linux-libc-dev:arm64. 445s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_arm64.deb ... 445s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 445s Selecting previously unselected package libcrypt-dev:arm64. 445s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 445s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 445s Selecting previously unselected package rpcsvc-proto. 445s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 445s Unpacking rpcsvc-proto (1.4.3-1build1) ... 445s Selecting previously unselected package libc6-dev:arm64. 445s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_arm64.deb ... 445s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 445s Selecting previously unselected package libisl23:arm64. 445s Preparing to unpack .../05-libisl23_0.27-1build1_arm64.deb ... 445s Unpacking libisl23:arm64 (0.27-1build1) ... 445s Selecting previously unselected package libmpc3:arm64. 445s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ... 445s Unpacking libmpc3:arm64 (1.3.1-2) ... 445s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 445s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 445s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 445s Selecting previously unselected package cpp-15. 445s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 445s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 445s Selecting previously unselected package cpp-aarch64-linux-gnu. 445s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 445s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 446s Selecting previously unselected package cpp. 446s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 446s Unpacking cpp (4:15.2.0-4ubuntu1) ... 446s Selecting previously unselected package libcc1-0:arm64. 446s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libitm1:arm64. 446s Preparing to unpack .../12-libitm1_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libasan8:arm64. 446s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package liblsan0:arm64. 446s Preparing to unpack .../14-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libtsan2:arm64. 446s Preparing to unpack .../15-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libubsan1:arm64. 446s Preparing to unpack .../16-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libhwasan0:arm64. 446s Preparing to unpack .../17-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package libgcc-15-dev:arm64. 446s Preparing to unpack .../18-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 446s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 446s Preparing to unpack .../19-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 446s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package gcc-15. 447s Preparing to unpack .../20-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package gcc-aarch64-linux-gnu. 447s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 447s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 447s Selecting previously unselected package gcc. 447s Preparing to unpack .../22-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 447s Unpacking gcc (4:15.2.0-4ubuntu1) ... 447s Selecting previously unselected package libstdc++-15-dev:arm64. 447s Preparing to unpack .../23-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package g++-15-aarch64-linux-gnu. 447s Preparing to unpack .../24-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package g++-15. 447s Preparing to unpack .../25-g++-15_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking g++-15 (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package g++-aarch64-linux-gnu. 447s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 447s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 447s Selecting previously unselected package g++. 447s Preparing to unpack .../27-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 447s Unpacking g++ (4:15.2.0-4ubuntu1) ... 447s Selecting previously unselected package build-essential. 447s Preparing to unpack .../28-build-essential_12.12ubuntu2_arm64.deb ... 447s Unpacking build-essential (12.12ubuntu2) ... 447s Selecting previously unselected package dctrl-tools. 447s Preparing to unpack .../29-dctrl-tools_2.24-3build4_arm64.deb ... 447s Unpacking dctrl-tools (2.24-3build4) ... 447s Selecting previously unselected package libgfortran-15-dev:arm64. 447s Preparing to unpack .../30-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 447s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 447s Preparing to unpack .../31-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 447s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 448s Selecting previously unselected package gfortran-15. 448s Preparing to unpack .../32-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 448s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 448s Selecting previously unselected package gfortran-aarch64-linux-gnu. 448s Preparing to unpack .../33-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 448s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 448s Selecting previously unselected package gfortran. 448s Preparing to unpack .../34-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 448s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 448s Selecting previously unselected package icu-devtools. 448s Preparing to unpack .../35-icu-devtools_78.2-1ubuntu1_arm64.deb ... 448s Unpacking icu-devtools (78.2-1ubuntu1) ... 448s Selecting previously unselected package libblas-dev:arm64. 448s Preparing to unpack .../36-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 448s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 448s Selecting previously unselected package libbz2-dev:arm64. 448s Preparing to unpack .../37-libbz2-dev_1.0.8-6build2_arm64.deb ... 448s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 448s Selecting previously unselected package libdeflate-dev:arm64. 448s Preparing to unpack .../38-libdeflate-dev_1.23-2build1_arm64.deb ... 448s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 448s Selecting previously unselected package libicu-dev:arm64. 448s Preparing to unpack .../39-libicu-dev_78.2-1ubuntu1_arm64.deb ... 448s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 448s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 448s Preparing to unpack .../40-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 448s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 448s Selecting previously unselected package libjpeg8-dev:arm64. 448s Preparing to unpack .../41-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 448s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 448s Selecting previously unselected package libjpeg-dev:arm64. 448s Preparing to unpack .../42-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 448s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 448s Selecting previously unselected package liblapack-dev:arm64. 449s Preparing to unpack .../43-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 449s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 449s Selecting previously unselected package libncurses-dev:arm64. 449s Preparing to unpack .../44-libncurses-dev_6.6+20251231-1_arm64.deb ... 449s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 449s Selecting previously unselected package libpcre2-16-0:arm64. 449s Preparing to unpack .../45-libpcre2-16-0_10.46-1_arm64.deb ... 449s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 449s Selecting previously unselected package libpcre2-32-0:arm64. 449s Preparing to unpack .../46-libpcre2-32-0_10.46-1_arm64.deb ... 449s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 449s Selecting previously unselected package libpcre2-posix3:arm64. 449s Preparing to unpack .../47-libpcre2-posix3_10.46-1_arm64.deb ... 449s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 449s Selecting previously unselected package libpcre2-dev:arm64. 449s Preparing to unpack .../48-libpcre2-dev_10.46-1_arm64.deb ... 449s Unpacking libpcre2-dev:arm64 (10.46-1) ... 449s Selecting previously unselected package libpkgconf3:arm64. 449s Preparing to unpack .../49-libpkgconf3_1.8.1-4build1_arm64.deb ... 449s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 449s Selecting previously unselected package zlib1g-dev:arm64. 449s Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 449s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 449s Selecting previously unselected package libpng-dev:arm64. 449s Preparing to unpack .../51-libpng-dev_1.6.54-1_arm64.deb ... 449s Unpacking libpng-dev:arm64 (1.6.54-1) ... 449s Selecting previously unselected package libreadline-dev:arm64. 449s Preparing to unpack .../52-libreadline-dev_8.3-3_arm64.deb ... 449s Unpacking libreadline-dev:arm64 (8.3-3) ... 449s Selecting previously unselected package libzstd-dev:arm64. 449s Preparing to unpack .../53-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 449s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 449s Selecting previously unselected package liblzma-dev:arm64. 449s Preparing to unpack .../54-liblzma-dev_5.8.2-2_arm64.deb ... 449s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 449s Selecting previously unselected package pkgconf-bin. 449s Preparing to unpack .../55-pkgconf-bin_1.8.1-4build1_arm64.deb ... 449s Unpacking pkgconf-bin (1.8.1-4build1) ... 449s Selecting previously unselected package pkgconf:arm64. 449s Preparing to unpack .../56-pkgconf_1.8.1-4build1_arm64.deb ... 449s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 449s Selecting previously unselected package libtirpc-dev:arm64. 449s Preparing to unpack .../57-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 449s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 449s Selecting previously unselected package r-base-dev. 450s Preparing to unpack .../58-r-base-dev_4.5.2-1ubuntu2_all.deb ... 450s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 450s Selecting previously unselected package pkg-r-autopkgtest. 450s Preparing to unpack .../59-pkg-r-autopkgtest_20250812_all.deb ... 450s Unpacking pkg-r-autopkgtest (20250812) ... 450s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 450s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 450s Setting up libpcre2-16-0:arm64 (10.46-1) ... 450s Setting up libpcre2-32-0:arm64 (10.46-1) ... 450s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 450s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 450s Setting up rpcsvc-proto (1.4.3-1build1) ... 450s Setting up libmpc3:arm64 (1.3.1-2) ... 450s Setting up icu-devtools (78.2-1ubuntu1) ... 450s Setting up pkgconf-bin (1.8.1-4build1) ... 450s Setting up liblzma-dev:arm64 (5.8.2-2) ... 450s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libpcre2-posix3:arm64 (10.46-1) ... 450s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 450s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libisl23:arm64 (0.27-1build1) ... 450s Setting up libc-dev-bin (2.42-2ubuntu4) ... 450s Setting up libdeflate-dev:arm64 (1.23-2build1) ... 450s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 450s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ... 450s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 450s Setting up dctrl-tools (2.24-3build4) ... 450s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 450s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 450s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 450s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 450s Setting up pkgconf:arm64 (1.8.1-4build1) ... 450s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 450s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 450s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 450s Setting up cpp-15 (15.2.0-12ubuntu1) ... 450s Setting up cpp (4:15.2.0-4ubuntu1) ... 450s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ... 450s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ... 450s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 450s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 450s Setting up libncurses-dev:arm64 (6.6+20251231-1) ... 450s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 450s Setting up libpcre2-dev:arm64 (10.46-1) ... 450s Setting up libreadline-dev:arm64 (8.3-3) ... 450s Setting up gcc-15 (15.2.0-12ubuntu1) ... 450s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 450s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 450s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 450s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 450s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 450s Setting up g++-15 (15.2.0-12ubuntu1) ... 450s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 450s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 450s Setting up libpng-dev:arm64 (1.6.54-1) ... 450s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 450s Setting up gcc (4:15.2.0-4ubuntu1) ... 450s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 450s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 450s Setting up gfortran (4:15.2.0-4ubuntu1) ... 450s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 450s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 450s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 450s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 450s Setting up g++ (4:15.2.0-4ubuntu1) ... 450s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 450s Setting up build-essential (12.12ubuntu2) ... 450s Setting up r-base-dev (4.5.2-1ubuntu2) ... 450s Setting up pkg-r-autopkgtest (20250812) ... 450s Processing triggers for libc-bin (2.42-2ubuntu4) ... 450s Processing triggers for man-db (2.13.1-1build1) ... 451s Processing triggers for install-info (7.2-5) ... 451s autopkgtest [00:15:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 451s autopkgtest [00:15:03]: test pkg-r-autopkgtest: [----------------------- 452s Test: Try to load the R library sctransform 452s 452s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 452s Copyright (C) 2025 The R Foundation for Statistical Computing 452s Platform: aarch64-unknown-linux-gnu 452s 452s R is free software and comes with ABSOLUTELY NO WARRANTY. 452s You are welcome to redistribute it under certain conditions. 452s Type 'license()' or 'licence()' for distribution details. 452s 452s R is a collaborative project with many contributors. 452s Type 'contributors()' for more information and 452s 'citation()' on how to cite R or R packages in publications. 452s 452s Type 'demo()' for some demos, 'help()' for on-line help, or 452s 'help.start()' for an HTML browser interface to help. 452s Type 'q()' to quit R. 452s 452s > library('sctransform') 454s > 454s autopkgtest [00:15:06]: test pkg-r-autopkgtest: -----------------------] 454s autopkgtest [00:15:06]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 454s pkg-r-autopkgtest PASS 455s autopkgtest [00:15:07]: @@@@@@@@@@@@@@@@@@@@ summary 455s run-unit-test PASS 455s pkg-r-autopkgtest PASS