0s autopkgtest [23:01:57]: starting date and time: 2026-02-09 23:01:57+0000 0s autopkgtest [23:01:57]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:01:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9ge5trp7/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-hexbin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-15.secgroup --name adt-resolute-arm64-r-cran-hexbin-20260209-230157-juju-7f2275-prod-proposed-migration-environment-2-8639f4da-9a3b-449e-ae63-88624fd103cb --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-cran-hexbin-20260209-230157-juju-7f2275-prod-proposed-migration-environment-2-8639f4da-9a3b-449e-ae63-88624fd103cb from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 127s autopkgtest [23:04:04]: testbed dpkg architecture: arm64 127s autopkgtest [23:04:04]: testbed apt version: 3.1.15 127s autopkgtest [23:04:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 127s autopkgtest [23:04:04]: testbed release detected to be: None 128s autopkgtest [23:04:05]: updating testbed package index (apt update) 128s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 129s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 129s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 129s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 129s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 129s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 132s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 132s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 132s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 132s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 132s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 135s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 135s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 135s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 137s Fetched 3862 kB in 7s (551 kB/s) 138s Reading package lists... 138s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 138s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 138s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 138s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 139s Reading package lists... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Calculating upgrade... 140s The following packages will be upgraded: 140s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 140s libip6tc2 libxtables12 wget 140s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 2534 kB of archives. 140s After this operation, 18.4 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 140s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 140s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 140s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 140s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 142s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 142s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 142s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 142s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 143s dpkg-preconfigure: unable to re-open stdin: No such file or directory 143s Fetched 2534 kB in 2s (1070 kB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 143s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 143s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 143s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 143s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 143s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 143s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 143s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 143s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 143s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 143s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 144s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 144s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 144s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 144s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 144s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 144s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 144s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 144s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 144s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 144s Setting up wget (1.25.0-2ubuntu4) ... 144s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 144s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 144s Setting up dracut-install (109-11ubuntu1) ... 144s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 144s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 144s Setting up iptables (1.8.11-2ubuntu3) ... 144s Setting up iproute2 (6.18.0-1ubuntu1) ... 144s Processing triggers for man-db (2.13.1-1build1) ... 145s Processing triggers for install-info (7.2-5) ... 145s Processing triggers for libc-bin (2.42-2ubuntu4) ... 145s autopkgtest [23:04:22]: upgrading testbed (apt dist-upgrade and autopurge) 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Calculating upgrade... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Solving dependencies... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s autopkgtest [23:04:27]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 150s autopkgtest [23:04:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-hexbin 153s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (dsc) [2156 B] 153s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (tar) [1195 kB] 153s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (diff) [3108 B] 154s gpgv: Signature made Tue Jan 28 00:21:54 2025 UTC 154s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 154s gpgv: issuer "plessy@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-cran-hexbin_1.28.5-1.dsc: no acceptable signature found 154s autopkgtest [23:04:31]: testing package r-cran-hexbin version 1.28.5-1 154s autopkgtest [23:04:31]: build not needed 156s autopkgtest [23:04:33]: test run-unit-test: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Solving dependencies... 157s The following NEW packages will be installed: 157s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 157s fonts-glyphicons-halflings fonts-mathjax libblas3 libc-dev-bin libc6-dev 157s libcairo2 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgfortran5 157s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 157s libjpeg8 libjs-bootstrap libjs-highlight.js libjs-jquery 157s libjs-jquery-datatables libjs-mathjax liblapack3 liblerc4 libpango-1.0-0 157s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 157s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 157s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 157s linux-libc-dev node-normalize.css r-base-core r-bioc-affy r-bioc-affyio 157s r-bioc-biobase r-bioc-biocgenerics r-bioc-limma r-bioc-preprocesscore 157s r-bioc-zlibbioc r-cran-biocmanager r-cran-evaluate r-cran-hexbin 157s r-cran-highr r-cran-knitr r-cran-lattice r-cran-statmod r-cran-xfun 157s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 157s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 64.8 MB of archives. 157s After this operation, 170 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 157s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 159s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 159s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 163s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 163s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 163s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 168s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 168s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 168s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 171s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 171s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 171s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 171s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 171s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 172s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 172s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 172s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 172s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 172s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 172s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 172s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 172s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 172s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 172s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 172s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 172s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 172s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 172s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 172s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 177s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 177s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 177s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 177s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 177s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 177s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 177s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 177s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 177s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 177s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 177s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 179s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 179s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 179s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 179s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 179s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 179s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 180s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 180s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 180s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 180s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 180s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 180s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 235s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 236s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 240s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 242s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 242s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-affyio arm64 1.76.0-2 [89.1 kB] 242s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 242s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-preprocesscore arm64 1.68.0+ds-2 [152 kB] 242s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-affy arm64 1.84.0-2 [2020 kB] 246s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 246s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 249s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 249s Get:68 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 251s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hexbin arm64 1.28.5-1 [1580 kB] 254s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 254s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 254s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 254s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 263s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 265s Preconfiguring packages ... 265s Fetched 64.8 MB in 1min 48s (602 kB/s) 265s Selecting previously unselected package fonts-dejavu-mono. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 265s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 265s Unpacking fonts-dejavu-mono (2.37-8build1) ... 265s Selecting previously unselected package fonts-dejavu-core. 265s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 265s Unpacking fonts-dejavu-core (2.37-8build1) ... 265s Selecting previously unselected package fontconfig-config. 265s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 265s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 265s Selecting previously unselected package libfontconfig1:arm64. 265s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 265s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 265s Selecting previously unselected package fontconfig. 265s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 265s Unpacking fontconfig (2.17.1-3ubuntu1) ... 265s Selecting previously unselected package fonts-glyphicons-halflings. 265s Preparing to unpack .../05-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 265s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 265s Selecting previously unselected package fonts-mathjax. 265s Preparing to unpack .../06-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 265s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 265s Selecting previously unselected package libblas3:arm64. 265s Preparing to unpack .../07-libblas3_3.12.1-7ubuntu1_arm64.deb ... 265s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 265s Selecting previously unselected package libc-dev-bin. 265s Preparing to unpack .../08-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 265s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 265s Selecting previously unselected package linux-libc-dev:arm64. 266s Preparing to unpack .../09-linux-libc-dev_6.19.0-3.3_arm64.deb ... 266s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 266s Selecting previously unselected package libcrypt-dev:arm64. 266s Preparing to unpack .../10-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 266s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 266s Selecting previously unselected package rpcsvc-proto. 266s Preparing to unpack .../11-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 266s Unpacking rpcsvc-proto (1.4.3-1build1) ... 266s Selecting previously unselected package libc6-dev:arm64. 266s Preparing to unpack .../12-libc6-dev_2.42-2ubuntu4_arm64.deb ... 266s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 266s Selecting previously unselected package libpixman-1-0:arm64. 266s Preparing to unpack .../13-libpixman-1-0_0.46.4-1_arm64.deb ... 266s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 266s Selecting previously unselected package libxcb-render0:arm64. 266s Preparing to unpack .../14-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 266s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 266s Selecting previously unselected package libxcb-shm0:arm64. 266s Preparing to unpack .../15-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 266s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 266s Selecting previously unselected package libxrender1:arm64. 266s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_arm64.deb ... 266s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 266s Selecting previously unselected package libcairo2:arm64. 266s Preparing to unpack .../17-libcairo2_1.18.4-3_arm64.deb ... 266s Unpacking libcairo2:arm64 (1.18.4-3) ... 266s Selecting previously unselected package libdatrie1:arm64. 266s Preparing to unpack .../18-libdatrie1_0.2.14-1_arm64.deb ... 266s Unpacking libdatrie1:arm64 (0.2.14-1) ... 266s Selecting previously unselected package libdeflate0:arm64. 266s Preparing to unpack .../19-libdeflate0_1.23-2build1_arm64.deb ... 266s Unpacking libdeflate0:arm64 (1.23-2build1) ... 266s Selecting previously unselected package libgfortran5:arm64. 266s Preparing to unpack .../20-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 266s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 266s Selecting previously unselected package libgomp1:arm64. 266s Preparing to unpack .../21-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 266s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 266s Selecting previously unselected package libgraphite2-3:arm64. 266s Preparing to unpack .../22-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 266s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 266s Selecting previously unselected package libharfbuzz0b:arm64. 266s Preparing to unpack .../23-libharfbuzz0b_12.3.2-1_arm64.deb ... 266s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 266s Selecting previously unselected package x11-common. 266s Preparing to unpack .../24-x11-common_1%3a7.7+24ubuntu1_all.deb ... 266s Unpacking x11-common (1:7.7+24ubuntu1) ... 266s Selecting previously unselected package libice6:arm64. 266s Preparing to unpack .../25-libice6_2%3a1.1.1-1build1_arm64.deb ... 266s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 266s Selecting previously unselected package libjpeg-turbo8:arm64. 266s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 266s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 266s Selecting previously unselected package libjpeg8:arm64. 266s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_arm64.deb ... 266s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 266s Selecting previously unselected package libjs-bootstrap. 266s Preparing to unpack .../28-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 266s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 266s Selecting previously unselected package libjs-highlight.js. 266s Preparing to unpack .../29-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 266s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 266s Selecting previously unselected package libjs-jquery. 266s Preparing to unpack .../30-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 266s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 266s Selecting previously unselected package libjs-jquery-datatables. 267s Preparing to unpack .../31-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 267s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 267s Selecting previously unselected package liblapack3:arm64. 267s Preparing to unpack .../32-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 267s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 267s Selecting previously unselected package liblerc4:arm64. 267s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 267s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 267s Selecting previously unselected package libthai-data. 267s Preparing to unpack .../34-libthai-data_0.1.30-1_all.deb ... 267s Unpacking libthai-data (0.1.30-1) ... 267s Selecting previously unselected package libthai0:arm64. 267s Preparing to unpack .../35-libthai0_0.1.30-1_arm64.deb ... 267s Unpacking libthai0:arm64 (0.1.30-1) ... 267s Selecting previously unselected package libpango-1.0-0:arm64. 267s Preparing to unpack .../36-libpango-1.0-0_1.57.0-1_arm64.deb ... 267s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 267s Selecting previously unselected package libpangoft2-1.0-0:arm64. 267s Preparing to unpack .../37-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 267s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 267s Selecting previously unselected package libpangocairo-1.0-0:arm64. 267s Preparing to unpack .../38-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 267s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 267s Selecting previously unselected package libpaper2:arm64. 267s Preparing to unpack .../39-libpaper2_2.2.5-0.3build1_arm64.deb ... 267s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 267s Selecting previously unselected package libpaper-utils. 267s Preparing to unpack .../40-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 267s Unpacking libpaper-utils (2.2.5-0.3build1) ... 267s Selecting previously unselected package libsharpyuv0:arm64. 267s Preparing to unpack .../41-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 267s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 267s Selecting previously unselected package libsm6:arm64. 267s Preparing to unpack .../42-libsm6_2%3a1.2.6-1build1_arm64.deb ... 267s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 267s Selecting previously unselected package libtcl8.6:arm64. 267s Preparing to unpack .../43-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 267s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 267s Selecting previously unselected package libjbig0:arm64. 267s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 267s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 267s Selecting previously unselected package libwebp7:arm64. 267s Preparing to unpack .../45-libwebp7_1.5.0-0.1build1_arm64.deb ... 267s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 267s Selecting previously unselected package libtiff6:arm64. 267s Preparing to unpack .../46-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 267s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 267s Selecting previously unselected package libxft2:arm64. 267s Preparing to unpack .../47-libxft2_2.3.6-1build2_arm64.deb ... 267s Unpacking libxft2:arm64 (2.3.6-1build2) ... 267s Selecting previously unselected package libxss1:arm64. 267s Preparing to unpack .../48-libxss1_1%3a1.2.3-1build4_arm64.deb ... 267s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 267s Selecting previously unselected package libtk8.6:arm64. 267s Preparing to unpack .../49-libtk8.6_8.6.17-1_arm64.deb ... 267s Unpacking libtk8.6:arm64 (8.6.17-1) ... 267s Selecting previously unselected package libxt6t64:arm64. 267s Preparing to unpack .../50-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 267s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 267s Selecting previously unselected package node-normalize.css. 267s Preparing to unpack .../51-node-normalize.css_8.0.1-5.1_all.deb ... 267s Unpacking node-normalize.css (8.0.1-5.1) ... 267s Selecting previously unselected package zip. 267s Preparing to unpack .../52-zip_3.0-15ubuntu3_arm64.deb ... 267s Unpacking zip (3.0-15ubuntu3) ... 267s Selecting previously unselected package unzip. 267s Preparing to unpack .../53-unzip_6.0-29ubuntu1_arm64.deb ... 267s Unpacking unzip (6.0-29ubuntu1) ... 267s Selecting previously unselected package xdg-utils. 267s Preparing to unpack .../54-xdg-utils_1.2.1-2ubuntu2_all.deb ... 267s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 267s Selecting previously unselected package r-base-core. 267s Preparing to unpack .../55-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 267s Unpacking r-base-core (4.5.2-1ubuntu2) ... 268s Selecting previously unselected package r-bioc-biocgenerics. 268s Preparing to unpack .../56-r-bioc-biocgenerics_0.52.0-2_all.deb ... 268s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 268s Selecting previously unselected package r-bioc-biobase. 268s Preparing to unpack .../57-r-bioc-biobase_2.66.0-2_arm64.deb ... 268s Unpacking r-bioc-biobase (2.66.0-2) ... 268s Selecting previously unselected package zlib1g-dev:arm64. 268s Preparing to unpack .../58-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 268s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 268s Selecting previously unselected package r-bioc-zlibbioc. 268s Preparing to unpack .../59-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 268s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 268s Selecting previously unselected package r-bioc-affyio. 268s Preparing to unpack .../60-r-bioc-affyio_1.76.0-2_arm64.deb ... 268s Unpacking r-bioc-affyio (1.76.0-2) ... 268s Selecting previously unselected package r-cran-biocmanager. 268s Preparing to unpack .../61-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 268s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 268s Selecting previously unselected package r-bioc-preprocesscore. 268s Preparing to unpack .../62-r-bioc-preprocesscore_1.68.0+ds-2_arm64.deb ... 268s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 268s Selecting previously unselected package r-bioc-affy. 268s Preparing to unpack .../63-r-bioc-affy_1.84.0-2_arm64.deb ... 268s Unpacking r-bioc-affy (1.84.0-2) ... 268s Selecting previously unselected package r-cran-statmod. 268s Preparing to unpack .../64-r-cran-statmod_1.5.0-1_arm64.deb ... 268s Unpacking r-cran-statmod (1.5.0-1) ... 268s Selecting previously unselected package r-bioc-limma. 268s Preparing to unpack .../65-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 268s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 268s Selecting previously unselected package r-cran-evaluate. 268s Preparing to unpack .../66-r-cran-evaluate_1.0.5-1_all.deb ... 268s Unpacking r-cran-evaluate (1.0.5-1) ... 268s Selecting previously unselected package r-cran-lattice. 268s Preparing to unpack .../67-r-cran-lattice_0.22-9-1_arm64.deb ... 268s Unpacking r-cran-lattice (0.22-9-1) ... 268s Selecting previously unselected package r-cran-hexbin. 268s Preparing to unpack .../68-r-cran-hexbin_1.28.5-1_arm64.deb ... 268s Unpacking r-cran-hexbin (1.28.5-1) ... 268s Selecting previously unselected package r-cran-xfun. 268s Preparing to unpack .../69-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 268s Unpacking r-cran-xfun (0.55+dfsg-1) ... 268s Selecting previously unselected package r-cran-highr. 268s Preparing to unpack .../70-r-cran-highr_0.11+dfsg-1_all.deb ... 268s Unpacking r-cran-highr (0.11+dfsg-1) ... 268s Selecting previously unselected package r-cran-yaml. 268s Preparing to unpack .../71-r-cran-yaml_2.3.10-1_arm64.deb ... 268s Unpacking r-cran-yaml (2.3.10-1) ... 268s Selecting previously unselected package libjs-mathjax. 268s Preparing to unpack .../72-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 268s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 269s Selecting previously unselected package r-cran-knitr. 269s Preparing to unpack .../73-r-cran-knitr_1.51+dfsg-1_all.deb ... 269s Unpacking r-cran-knitr (1.51+dfsg-1) ... 269s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 269s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 269s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 269s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ... 269s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 269s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ... 269s Setting up libxrender1:arm64 (1:0.9.12-1) ... 269s Setting up libdatrie1:arm64 (0.2.14-1) ... 269s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 269s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 269s Setting up unzip (6.0-29ubuntu1) ... 269s Setting up x11-common (1:7.7+24ubuntu1) ... 269s Setting up libdeflate0:arm64 (1.23-2build1) ... 269s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 269s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 269s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 269s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 269s Setting up zip (3.0-15ubuntu3) ... 269s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 269s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 269s Setting up rpcsvc-proto (1.4.3-1build1) ... 269s Setting up fonts-dejavu-mono (2.37-8build1) ... 269s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 269s Setting up fonts-dejavu-core (2.37-8build1) ... 269s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 269s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 269s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 269s Setting up libjs-highlight.js (10.7.3+dfsg-2) ... 269s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 269s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 269s Setting up libthai-data (0.1.30-1) ... 269s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 269s Setting up libpaper2:arm64 (2.2.5-0.3build1) ... 269s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 269s Setting up libc-dev-bin (2.42-2ubuntu4) ... 269s Setting up node-normalize.css (8.0.1-5.1) ... 269s Setting up xdg-utils (1.2.1-2ubuntu2) ... 269s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 269s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 269s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 269s Setting up libice6:arm64 (2:1.1.1-1build1) ... 269s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 269s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 269s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 270s Setting up libpaper-utils (2.2.5-0.3build1) ... 270s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 270s Setting up libthai0:arm64 (0.1.30-1) ... 270s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 270s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ... 270s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 270s Setting up libsm6:arm64 (2:1.2.6-1build1) ... 270s Setting up fontconfig (2.17.1-3ubuntu1) ... 272s Regenerating fonts cache... done. 272s Setting up libxft2:arm64 (2.3.6-1build2) ... 272s Setting up libtk8.6:arm64 (8.6.17-1) ... 272s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 272s Setting up libcairo2:arm64 (1.18.4-3) ... 272s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 272s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 272s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 272s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 272s Setting up r-base-core (4.5.2-1ubuntu2) ... 272s Creating config file /etc/R/Renviron with new version 272s Setting up r-cran-lattice (0.22-9-1) ... 272s Setting up r-cran-hexbin (1.28.5-1) ... 272s Setting up r-cran-statmod (1.5.0-1) ... 272s Setting up r-bioc-biocgenerics (0.52.0-2) ... 272s Setting up r-cran-xfun (0.55+dfsg-1) ... 272s Setting up r-cran-yaml (2.3.10-1) ... 272s Setting up r-cran-evaluate (1.0.5-1) ... 272s Setting up r-cran-highr (0.11+dfsg-1) ... 272s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 272s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 272s Setting up r-bioc-biobase (2.66.0-2) ... 272s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 272s Setting up r-cran-knitr (1.51+dfsg-1) ... 272s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 272s Setting up r-bioc-affyio (1.76.0-2) ... 272s Setting up r-bioc-affy (1.84.0-2) ... 272s Processing triggers for libc-bin (2.42-2ubuntu4) ... 272s Processing triggers for man-db (2.13.1-1build1) ... 272s Processing triggers for install-info (7.2-5) ... 273s autopkgtest [23:06:30]: test run-unit-test: [----------------------- 274s BEGIN TEST hdiffplot.R 274s 274s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 274s Copyright (C) 2025 The R Foundation for Statistical Computing 274s Platform: aarch64-unknown-linux-gnu 274s 274s R is free software and comes with ABSOLUTELY NO WARRANTY. 274s You are welcome to redistribute it under certain conditions. 274s Type 'license()' or 'licence()' for distribution details. 274s 274s R is a collaborative project with many contributors. 274s Type 'contributors()' for more information and 274s 'citation()' on how to cite R or R packages in publications. 274s 274s Type 'demo()' for some demos, 'help()' for on-line help, or 274s 'help.start()' for an HTML browser interface to help. 274s Type 'q()' to quit R. 274s 274s > library(hexbin) 274s > 274s > if(R.version$major != "1" || as.numeric(R.version$minor) >= 7) 274s + RNGversion("1.6") 274s > Warning messages: 274s 1: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 274s buggy version of Kinderman-Ramage generator used 274s 2: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 274s non-uniform 'Rounding' sampler used 274s 3: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 274s RNGkind: Marsaglia-Multicarry has poor statistical properties 274s set.seed(213) 274s > x1 <- rnorm(10000) 274s > y1 <- rnorm(10000) 274s > 274s > x2 <- rnorm(10000,mean = .3) 274s > y2 <- rnorm(10000,mean = .3) 274s > 274s > rx <- range(x1,x2) 274s > ry <- range(y1,y2) 274s > 274s > str(bin1 <- hexbin(x1,y1, xbnds = rx, ybnds = ry)) 274s Formal class 'hexbin' [package "hexbin"] with 16 slots 274s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 274s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 274s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 274s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 274s ..@ xbins : num 30 274s ..@ shape : num 1 274s ..@ xbnds : num [1:2] -3.8 4.3 274s ..@ ybnds : num [1:2] -3.71 4.17 274s ..@ dimen : num [1:2] 36 31 274s ..@ n : int 10000 274s ..@ ncells: int 535 274s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 274s ..@ xlab : chr "x1" 274s ..@ ylab : chr "y1" 274s ..@ cID : NULL 274s ..@ cAtt : int(0) 274s > str(bin2 <- hexbin(x2,y2, xbnds = rx, ybnds = ry)) 274s Formal class 'hexbin' [package "hexbin"] with 16 slots 274s ..@ cell : int [1:545] 41 51 75 76 104 107 110 114 136 138 ... 274s ..@ count : int [1:545] 1 1 1 1 1 2 1 1 2 1 ... 274s ..@ xcm : num [1:545] -1.141 1.445 -0.493 -0.324 -0.995 ... 274s ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ... 274s ..@ xbins : num 30 274s ..@ shape : num 1 274s ..@ xbnds : num [1:2] -3.8 4.3 274s ..@ ybnds : num [1:2] -3.71 4.17 274s ..@ dimen : num [1:2] 36 31 274s ..@ n : int 10000 274s ..@ ncells: int 545 274s ..@ call : language hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 274s ..@ xlab : chr "x2" 274s ..@ ylab : chr "y2" 274s ..@ cID : NULL 274s ..@ cAtt : int(0) 274s > 274s > str(erode(bin1)) 274s Formal class 'erodebin' [package "hexbin"] with 19 slots 274s ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ... 274s ..@ cdfcut: num 0.5 274s ..@ erode : int [1:71] 12 35 34 57 52 4 30 101 138 150 ... 274s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 274s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 274s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 274s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 274s ..@ xbins : num 30 274s ..@ shape : num 1 274s ..@ xbnds : num [1:2] -3.8 4.3 274s ..@ ybnds : num [1:2] -3.71 4.17 274s ..@ dimen : num [1:2] 36 31 274s ..@ n : int 10000 274s ..@ ncells: int 535 274s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 274s ..@ xlab : chr "x1" 274s ..@ ylab : chr "y1" 274s ..@ cID : NULL 274s ..@ cAtt : int(0) 274s > 274s > str(smbin1 <- smooth.hexbin(bin1)) 274s Formal class 'smoothbin' [package "hexbin"] with 17 slots 274s ..@ wts : num [1:3] 48 4 1 274s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 274s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 274s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 274s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 274s ..@ xbins : num 34 274s ..@ shape : num 1 274s ..@ xbnds : num [1:2] -4.34 4.84 274s ..@ ybnds : num [1:2] -4.23 4.7 274s ..@ dimen : num [1:2] 40 35 274s ..@ n : int 10000 274s ..@ ncells: int 535 274s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 274s ..@ xlab : chr "x1" 274s ..@ ylab : chr "y1" 274s ..@ cID : NULL 274s ..@ cAtt : int(0) 274s > (smbin2 <- smooth.hexbin(bin2)) 274s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 274s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 274s > 274s > str(erodebin1 <- erode.hexbin(smbin1)) 274s Formal class 'erodebin' [package "hexbin"] with 19 slots 274s ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ... 274s ..@ cdfcut: num 0.5 274s ..@ erode : int [1:73] 11 35 95 100 117 88 6 39 167 232 ... 274s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 274s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 274s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 274s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 274s ..@ xbins : num 34 274s ..@ shape : num 1 274s ..@ xbnds : num [1:2] -4.34 4.84 274s ..@ ybnds : num [1:2] -4.23 4.7 274s ..@ dimen : num [1:2] 40 35 274s ..@ n : int 10000 274s ..@ ncells: int 535 274s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 274s ..@ xlab : chr "x1" 274s ..@ ylab : chr "y1" 274s ..@ cID : NULL 274s ..@ cAtt : int(0) 274s > (erodebin2 <- erode.hexbin(smbin2)) 274s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 274s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 274s > 274s > if(FALSE)## does not work -- what funny stuff is hdiffplot() doing??? 274s + par(mfrow = c(2,1)) 274s > 274s > if(exists("hdiffplot", mode="function")) { ## not yet in new hexbin 274s + hdiffplot(bin1,bin2, main = "Original N(0,*) Random bins") 274s + 274s + hdiffplot(smbin1,smbin2, main = "smooth.hexbin() smoothed bins") 274s + 274s + plot.new() 274s + hdiffplot(erodebin1,erodebin2, main = "erode.hexbin()d smoothed bins") 274s + }# not yet 274s > 274s BEGIN TEST hray.R 274s 274s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 274s Copyright (C) 2025 The R Foundation for Statistical Computing 274s Platform: aarch64-unknown-linux-gnu 274s 274s R is free software and comes with ABSOLUTELY NO WARRANTY. 274s You are welcome to redistribute it under certain conditions. 274s Type 'license()' or 'licence()' for distribution details. 274s 274s R is a collaborative project with many contributors. 274s Type 'contributors()' for more information and 274s 'citation()' on how to cite R or R packages in publications. 274s 274s Type 'demo()' for some demos, 'help()' for on-line help, or 274s 'help.start()' for an HTML browser interface to help. 274s Type 'q()' to quit R. 274s 274s > library(hexbin) 274s > 274s > set.seed(572) 274s > 274s > x <- rnorm(100) 274s > y <- rnorm(100) 274s > val <- rnorm(100) 274s > inc <- abs(rnorm(100,sd = .3)) 274s > loB <- val-inc 274s > hiB <- val+inc 274s > 274s > if(exists("hray", mode="function")) { # 'real soon now' 274s + 274s + ## no confidence bounds 274s + plot(x,y,type = 'n') 274s + hray(x,y,val) 274s + 274s + ## confidence bounds 274s + plot(x,y,type = 'n') 274s + hray(x,y,val, lo = loB, hi = hiB) 274s + 274s + ## clockwise orientation 274s + plot(x,y,type = 'n') 274s + hray(x,y,val, loB, hiB, clockwise = TRUE) 274s + 274s + ## no tics and small filled dots 274s + plot(x,y,type = 'n') 274s + hray(x,y,val, loB, hiB, ticlength = FALSE, 274s + dotside = 20, dotlength = .025, dotden = -1) 274s + 274s + } 274s > 274s BEGIN TEST large.R 275s 275s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 275s Copyright (C) 2025 The R Foundation for Statistical Computing 275s Platform: aarch64-unknown-linux-gnu 275s 275s R is free software and comes with ABSOLUTELY NO WARRANTY. 275s You are welcome to redistribute it under certain conditions. 275s Type 'license()' or 'licence()' for distribution details. 275s 275s R is a collaborative project with many contributors. 275s Type 'contributors()' for more information and 275s 'citation()' on how to cite R or R packages in publications. 275s 275s Type 'demo()' for some demos, 'help()' for on-line help, or 275s 'help.start()' for an HTML browser interface to help. 275s Type 'q()' to quit R. 275s 275s > library(hexbin) 275s > 275s > if(FALSE) { ## the following is still quite a bit from working/useful : 275s + 275s + ## what should that do? set a palette? 275s + rgb <- matrix(c( 275s + 15,15,15, 275s + 275s + 0, 0, 0, 275s + 1, 9,15, 275s + 9,15, 9, 275s + 15, 9, 9, 275s + 275s + 0, 0, 0, 275s + 0, 0, 0, 275s + 0, 0, 0, 275s + 0, 0, 0, 275s + 0, 0, 0, 275s + 0, 0, 0, 275s + 275s + 9, 9, 9, 275s + 0, 2, 7, 275s + 0, 7, 1, 275s + 8, 1, 1, 275s + 275s + 15, 2, 2, 275s + 11, 1, 1, 275s + 8, 1, 1, 275s + 5, 1, 1, 275s + 5, 1, 1, 275s + 15,15,15), ncol = 3, byrow = TRUE) 275s + 275s + ##ps.options(rasters=600,color=rgb/15,background=2) 275s + ##ps.options(color=rgb/15,background=2) 275s + postscript("large.ps",width = 10,height = 7.5) 275s + 275s + plot.hexbin(ans.25mil, style = "nest", lcex = .9) 275s + 275s + }## FALSE, i.e. nothing done 275s > 275s BEGIN TEST viewp-ex.R 275s 275s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 275s Copyright (C) 2025 The R Foundation for Statistical Computing 275s Platform: aarch64-unknown-linux-gnu 275s 275s R is free software and comes with ABSOLUTELY NO WARRANTY. 275s You are welcome to redistribute it under certain conditions. 275s Type 'license()' or 'licence()' for distribution details. 275s 275s R is a collaborative project with many contributors. 275s Type 'contributors()' for more information and 275s 'citation()' on how to cite R or R packages in publications. 275s 275s Type 'demo()' for some demos, 'help()' for on-line help, or 275s 'help.start()' for an HTML browser interface to help. 275s Type 'q()' to quit R. 275s 275s > library(hexbin) 275s > 275s > ## a variation on Nicholas' post to bioconductor & example(hexViewport) 275s > set.seed(545) 275s > x <- rnorm(2^15) 275s > y <- 3*x - .2*x^2 + rnorm(2^15) 275s > hbin <- hexbin(x,y) 275s > 275s > ## 275s > hp <- hexViewport(hbin, newpage = TRUE) 275s > pushHexport(hp) 275s > library("grid") 275s > grid.rect() 275s > grid.xaxis() 275s > grid.yaxis() 275s > grid.hexagons(hbin, style = "centroid") 275s > hloess <- loess(y ~ x, data = hcell2xy(hbin), weights = hbin @ count) 275s > xx <- seq(hbin@xbnds[1], hbin@xbnds[2], length = 500) 275s > grid.lines(xx, predict(hloess, xx), 275s + gp = gpar(col = 'red', lwd = 2), default.units = "native") 275s > popViewport() 275s > 275s autopkgtest [23:06:32]: test run-unit-test: -----------------------] 276s run-unit-test PASS 276s autopkgtest [23:06:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 276s autopkgtest [23:06:33]: test pkg-r-autopkgtest: preparing testbed 276s Reading package lists... 276s Building dependency tree... 276s Reading state information... 277s Solving dependencies... 277s The following NEW packages will be installed: 277s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 277s dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 277s gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 277s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 277s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-15-dev 277s libgfortran-15-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 277s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 277s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 277s libpkgconf3 libpng-dev libreadline-dev libstdc++-15-dev libtirpc-dev 277s libtsan2 libubsan1 libzstd-dev pkg-r-autopkgtest pkgconf pkgconf-bin 277s r-base-dev 277s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 277s Need to get 98.0 MB of archives. 277s After this operation, 356 MB of additional disk space will be used. 277s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 278s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 278s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 298s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 298s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 298s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 298s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 298s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 298s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 302s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 304s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 308s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 310s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 312s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 316s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 351s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 351s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 351s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 351s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 357s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 378s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 378s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 378s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 378s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 378s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 378s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 378s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 395s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 395s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 395s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 395s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 395s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 395s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 395s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 395s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 415s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 415s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 415s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 415s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 422s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 422s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 422s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 422s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 422s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 423s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 423s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 423s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 423s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 423s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 423s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 423s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 423s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 423s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 423s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 423s Fetched 98.0 MB in 2min 26s (671 kB/s) 423s Selecting previously unselected package libisl23:arm64. 423s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 146138 files and directories currently installed.) 423s Preparing to unpack .../00-libisl23_0.27-1build1_arm64.deb ... 423s Unpacking libisl23:arm64 (0.27-1build1) ... 423s Selecting previously unselected package libmpc3:arm64. 423s Preparing to unpack .../01-libmpc3_1.3.1-2_arm64.deb ... 423s Unpacking libmpc3:arm64 (1.3.1-2) ... 423s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 423s Preparing to unpack .../02-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 423s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package cpp-15. 424s Preparing to unpack .../03-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package cpp-aarch64-linux-gnu. 424s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 424s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 424s Selecting previously unselected package cpp. 424s Preparing to unpack .../05-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 424s Unpacking cpp (4:15.2.0-4ubuntu1) ... 424s Selecting previously unselected package libcc1-0:arm64. 424s Preparing to unpack .../06-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libitm1:arm64. 424s Preparing to unpack .../07-libitm1_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libasan8:arm64. 424s Preparing to unpack .../08-libasan8_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package liblsan0:arm64. 424s Preparing to unpack .../09-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libtsan2:arm64. 424s Preparing to unpack .../10-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libubsan1:arm64. 424s Preparing to unpack .../11-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libhwasan0:arm64. 424s Preparing to unpack .../12-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package libgcc-15-dev:arm64. 424s Preparing to unpack .../13-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 424s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 424s Preparing to unpack .../14-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 424s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 425s Selecting previously unselected package gcc-15. 425s Preparing to unpack .../15-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 425s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 425s Selecting previously unselected package gcc-aarch64-linux-gnu. 425s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 425s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 425s Selecting previously unselected package gcc. 425s Preparing to unpack .../17-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 425s Unpacking gcc (4:15.2.0-4ubuntu1) ... 425s Selecting previously unselected package libstdc++-15-dev:arm64. 425s Preparing to unpack .../18-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 425s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 425s Selecting previously unselected package g++-15-aarch64-linux-gnu. 425s Preparing to unpack .../19-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 425s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 425s Selecting previously unselected package g++-15. 425s Preparing to unpack .../20-g++-15_15.2.0-12ubuntu1_arm64.deb ... 425s Unpacking g++-15 (15.2.0-12ubuntu1) ... 425s Selecting previously unselected package g++-aarch64-linux-gnu. 425s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 425s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 425s Selecting previously unselected package g++. 425s Preparing to unpack .../22-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 425s Unpacking g++ (4:15.2.0-4ubuntu1) ... 425s Selecting previously unselected package build-essential. 425s Preparing to unpack .../23-build-essential_12.12ubuntu2_arm64.deb ... 425s Unpacking build-essential (12.12ubuntu2) ... 425s Selecting previously unselected package dctrl-tools. 425s Preparing to unpack .../24-dctrl-tools_2.24-3build4_arm64.deb ... 425s Unpacking dctrl-tools (2.24-3build4) ... 425s Selecting previously unselected package libgfortran-15-dev:arm64. 425s Preparing to unpack .../25-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 425s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 426s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 426s Preparing to unpack .../26-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 426s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 426s Selecting previously unselected package gfortran-15. 426s Preparing to unpack .../27-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 426s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 426s Selecting previously unselected package gfortran-aarch64-linux-gnu. 426s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 426s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 426s Selecting previously unselected package gfortran. 426s Preparing to unpack .../29-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 426s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 426s Selecting previously unselected package icu-devtools. 426s Preparing to unpack .../30-icu-devtools_78.2-1ubuntu1_arm64.deb ... 426s Unpacking icu-devtools (78.2-1ubuntu1) ... 426s Selecting previously unselected package libblas-dev:arm64. 426s Preparing to unpack .../31-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 426s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 426s Selecting previously unselected package libbz2-dev:arm64. 426s Preparing to unpack .../32-libbz2-dev_1.0.8-6build2_arm64.deb ... 426s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 426s Selecting previously unselected package libdeflate-dev:arm64. 426s Preparing to unpack .../33-libdeflate-dev_1.23-2build1_arm64.deb ... 426s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 426s Selecting previously unselected package libicu-dev:arm64. 426s Preparing to unpack .../34-libicu-dev_78.2-1ubuntu1_arm64.deb ... 426s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 426s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 426s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 426s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 426s Selecting previously unselected package libjpeg8-dev:arm64. 426s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 426s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 426s Selecting previously unselected package libjpeg-dev:arm64. 426s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 426s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 426s Selecting previously unselected package liblapack-dev:arm64. 427s Preparing to unpack .../38-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 427s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 427s Selecting previously unselected package libncurses-dev:arm64. 427s Preparing to unpack .../39-libncurses-dev_6.6+20251231-1_arm64.deb ... 427s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 427s Selecting previously unselected package libpcre2-16-0:arm64. 427s Preparing to unpack .../40-libpcre2-16-0_10.46-1_arm64.deb ... 427s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 427s Selecting previously unselected package libpcre2-32-0:arm64. 427s Preparing to unpack .../41-libpcre2-32-0_10.46-1_arm64.deb ... 427s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 427s Selecting previously unselected package libpcre2-posix3:arm64. 427s Preparing to unpack .../42-libpcre2-posix3_10.46-1_arm64.deb ... 427s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 427s Selecting previously unselected package libpcre2-dev:arm64. 427s Preparing to unpack .../43-libpcre2-dev_10.46-1_arm64.deb ... 427s Unpacking libpcre2-dev:arm64 (10.46-1) ... 427s Selecting previously unselected package libpkgconf3:arm64. 427s Preparing to unpack .../44-libpkgconf3_1.8.1-4build1_arm64.deb ... 427s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 427s Selecting previously unselected package libpng-dev:arm64. 427s Preparing to unpack .../45-libpng-dev_1.6.54-1_arm64.deb ... 427s Unpacking libpng-dev:arm64 (1.6.54-1) ... 427s Selecting previously unselected package libreadline-dev:arm64. 427s Preparing to unpack .../46-libreadline-dev_8.3-3_arm64.deb ... 427s Unpacking libreadline-dev:arm64 (8.3-3) ... 427s Selecting previously unselected package libzstd-dev:arm64. 427s Preparing to unpack .../47-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 427s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 427s Selecting previously unselected package liblzma-dev:arm64. 427s Preparing to unpack .../48-liblzma-dev_5.8.2-2_arm64.deb ... 427s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 427s Selecting previously unselected package pkgconf-bin. 427s Preparing to unpack .../49-pkgconf-bin_1.8.1-4build1_arm64.deb ... 427s Unpacking pkgconf-bin (1.8.1-4build1) ... 427s Selecting previously unselected package pkgconf:arm64. 427s Preparing to unpack .../50-pkgconf_1.8.1-4build1_arm64.deb ... 427s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 427s Selecting previously unselected package libtirpc-dev:arm64. 427s Preparing to unpack .../51-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 427s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 427s Selecting previously unselected package r-base-dev. 427s Preparing to unpack .../52-r-base-dev_4.5.2-1ubuntu2_all.deb ... 427s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 427s Selecting previously unselected package pkg-r-autopkgtest. 427s Preparing to unpack .../53-pkg-r-autopkgtest_20250812_all.deb ... 427s Unpacking pkg-r-autopkgtest (20250812) ... 427s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 427s Setting up libncurses-dev:arm64 (6.6+20251231-1) ... 427s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 427s Setting up libpng-dev:arm64 (1.6.54-1) ... 427s Setting up libreadline-dev:arm64 (8.3-3) ... 427s Setting up libpcre2-16-0:arm64 (10.46-1) ... 427s Setting up libpcre2-32-0:arm64 (10.46-1) ... 427s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 427s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 427s Setting up libmpc3:arm64 (1.3.1-2) ... 427s Setting up icu-devtools (78.2-1ubuntu1) ... 427s Setting up pkgconf-bin (1.8.1-4build1) ... 427s Setting up liblzma-dev:arm64 (5.8.2-2) ... 427s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libpcre2-posix3:arm64 (10.46-1) ... 427s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 427s Setting up libisl23:arm64 (0.27-1build1) ... 427s Setting up libdeflate-dev:arm64 (1.23-2build1) ... 427s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ... 427s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 427s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ... 427s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 427s Setting up dctrl-tools (2.24-3build4) ... 427s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 427s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 427s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 427s Setting up libpcre2-dev:arm64 (10.46-1) ... 427s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 427s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 427s Setting up pkgconf:arm64 (1.8.1-4build1) ... 427s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 427s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 427s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 427s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 427s Setting up cpp-15 (15.2.0-12ubuntu1) ... 427s Setting up cpp (4:15.2.0-4ubuntu1) ... 427s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 427s Setting up gcc-15 (15.2.0-12ubuntu1) ... 427s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 427s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 427s Setting up g++-15 (15.2.0-12ubuntu1) ... 427s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 427s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 427s Setting up gcc (4:15.2.0-4ubuntu1) ... 427s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 427s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 427s Setting up gfortran (4:15.2.0-4ubuntu1) ... 427s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 427s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 427s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 427s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 427s Setting up g++ (4:15.2.0-4ubuntu1) ... 427s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 427s Setting up build-essential (12.12ubuntu2) ... 427s Setting up r-base-dev (4.5.2-1ubuntu2) ... 427s Setting up pkg-r-autopkgtest (20250812) ... 427s Processing triggers for libc-bin (2.42-2ubuntu4) ... 427s Processing triggers for man-db (2.13.1-1build1) ... 428s Processing triggers for install-info (7.2-5) ... 429s autopkgtest [23:09:06]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 429s autopkgtest [23:09:06]: test pkg-r-autopkgtest: [----------------------- 429s Test: Try to load the R library hexbin 430s 430s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 430s Copyright (C) 2025 The R Foundation for Statistical Computing 430s Platform: aarch64-unknown-linux-gnu 430s 430s R is free software and comes with ABSOLUTELY NO WARRANTY. 430s You are welcome to redistribute it under certain conditions. 430s Type 'license()' or 'licence()' for distribution details. 430s 430s R is a collaborative project with many contributors. 430s Type 'contributors()' for more information and 430s 'citation()' on how to cite R or R packages in publications. 430s 430s Type 'demo()' for some demos, 'help()' for on-line help, or 430s 'help.start()' for an HTML browser interface to help. 430s Type 'q()' to quit R. 430s 430s > library('hexbin') 430s > 430s autopkgtest [23:09:07]: test pkg-r-autopkgtest: -----------------------] 431s autopkgtest [23:09:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 431s pkg-r-autopkgtest PASS 431s autopkgtest [23:09:08]: @@@@@@@@@@@@@@@@@@@@ summary 431s run-unit-test PASS 431s pkg-r-autopkgtest PASS