0s autopkgtest [23:50:29]: starting date and time: 2026-02-09 23:50:29+0000 0s autopkgtest [23:50:29]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:50:29]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fb3csp0d/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-10.secgroup --name adt-resolute-arm64-r-cran-gstat-20260209-235029-juju-7f2275-prod-proposed-migration-environment-15-b5a933ca-9650-4732-98ca-26c55167aa97 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-r-cran-gstat-20260209-235029-juju-7f2275-prod-proposed-migration-environment-15-b5a933ca-9650-4732-98ca-26c55167aa97 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 149s autopkgtest [23:52:58]: testbed dpkg architecture: arm64 149s autopkgtest [23:52:58]: testbed apt version: 3.1.15 149s autopkgtest [23:52:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 149s autopkgtest [23:52:58]: testbed release detected to be: None 150s autopkgtest [23:52:59]: updating testbed package index (apt update) 150s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 150s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 150s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 150s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 150s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 154s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 154s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 154s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 154s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 154s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 154s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 158s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 158s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 158s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 159s Fetched 3862 kB in 8s (512 kB/s) 160s Reading package lists... 161s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 161s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 161s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 161s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 162s Reading package lists... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Calculating upgrade... 163s The following packages will be upgraded: 163s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 163s libip6tc2 libxtables12 wget 163s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s Need to get 2534 kB of archives. 163s After this operation, 18.4 kB of additional disk space will be used. 163s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 163s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 163s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 163s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 163s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 166s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 166s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 166s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 166s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 166s dpkg-preconfigure: unable to re-open stdin: No such file or directory 166s Fetched 2534 kB in 3s (939 kB/s) 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 166s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 166s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 167s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 167s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 167s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 167s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 167s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 167s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 167s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 167s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 167s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 167s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 167s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 167s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 167s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 167s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 168s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 168s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 168s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 168s Setting up wget (1.25.0-2ubuntu4) ... 168s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 168s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 168s Setting up dracut-install (109-11ubuntu1) ... 168s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 168s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 168s Setting up iptables (1.8.11-2ubuntu3) ... 168s Setting up iproute2 (6.18.0-1ubuntu1) ... 168s Processing triggers for man-db (2.13.1-1build1) ... 169s Processing triggers for install-info (7.2-5) ... 169s Processing triggers for libc-bin (2.42-2ubuntu4) ... 169s autopkgtest [23:53:18]: upgrading testbed (apt dist-upgrade and autopurge) 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Calculating upgrade... 171s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 171s Solving dependencies... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s autopkgtest [23:53:23]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 174s autopkgtest [23:53:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 180s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 180s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 180s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 180s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 180s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 180s gpgv: issuer "tille@debian.org" 180s gpgv: Can't check signature: No public key 180s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 180s autopkgtest [23:53:29]: testing package r-cran-gstat version 2.1-3-2 180s autopkgtest [23:53:29]: build not needed 183s autopkgtest [23:53:32]: test run-unit-test: preparing testbed 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Solving dependencies... 184s The following NEW packages will be installed: 184s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 184s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 184s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 184s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 184s libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 libgif7 184s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 184s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 184s libhwy1t64 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 184s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 184s libltdl7 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 184s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 184s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 184s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 184s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 184s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 184s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 184s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 184s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 184s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-farver r-cran-fields 184s r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 r-cran-globals 184s r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals r-cran-isoband 184s r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lifecycle 184s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 184s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-r6 184s r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 184s r-cran-s7 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime 184s r-cran-spam r-cran-stars r-cran-terra r-cran-units r-cran-vctrs 184s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 184s unixodbc-common unzip x11-common xdg-utils zip 184s 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 160 MB of archives. 184s After this operation, 352 MB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 184s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 186s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 186s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 186s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 186s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-data all 3.12.1+dfsg-1 [278 kB] 186s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-plugins arm64 3.12.1+dfsg-1 [26.8 kB] 186s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libabsl20260107 arm64 20260107.0-1 [563 kB] 187s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.5-1 [21.8 kB] 187s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.13.1-2 [1773 kB] 189s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 189s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 190s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 194s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarpack2t64 arm64 3.9.1-6 [94.9 kB] 194s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsuperlu7 arm64 7.0.1+dfsg1-2 [171 kB] 194s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarmadillo15 arm64 1:15.2.1+dfsg-2 [108 kB] 194s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdav1d7 arm64 1.5.3-1 [297 kB] 194s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgav1-2 arm64 0.20.0-2build1 [547 kB] 195s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 195s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 195s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libyuv0 arm64 0.0.1922.20260106-1 [160 kB] 195s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 libavif16 arm64 1.3.0-1ubuntu3 [112 kB] 195s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libsnappy1v5 arm64 1.2.2-2 [30.1 kB] 195s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libblosc1 arm64 1.21.5+ds-2 [25.9 kB] 195s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 195s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 195s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 195s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 195s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 196s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcfitsio10t64 arm64 4.6.3-1 [517 kB] 196s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 196s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1build1 [148 kB] 196s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 196s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfyba0t64 arm64 4.1.1-11build2 [119 kB] 196s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [24.4 kB] 196s Get:36 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfreexl1 arm64 2.0.0-1build3 [42.4 kB] 196s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos3.14.1 arm64 3.14.1-2 [935 kB] 198s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos-c1t64 arm64 3.14.1-2 [110 kB] 198s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.7.1-1 [7950 kB] 213s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 213s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 213s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 213s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 213s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 213s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.7.1-1 [1370 kB] 216s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeotiff5 arm64 1.7.4-1build1 [62.0 kB] 216s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu3 [35.8 kB] 216s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.5-1 [17.0 kB] 216s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf4-0 arm64 4.3.1-2 [304 kB] 216s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.6+repack-2 [1287 kB] 218s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.21.2-1 [13.9 kB] 218s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.21.2-1 [9696 B] 218s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.21.2-1 [502 kB] 218s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwy1t64 arm64 1.3.0-2 [513 kB] 218s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 218s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libjxl0.11 arm64 0.11.1-6ubuntu1 [909 kB] 220s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB] 220s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlbase1t64 arm64 1.3.0-13 [48.2 kB] 220s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmldom1t64 arm64 1.3.0-13 [143 kB] 220s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlengine1t64 arm64 1.3.0-13 [68.9 kB] 220s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 220s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmuparser2v5 arm64 2.3.4-2 [129 kB] 220s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 220s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libmysqlclient24 arm64 8.4.8-0ubuntu1 [1244 kB] 222s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.6+repack-2 [59.1 kB] 222s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 223s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 223s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbc2 arm64 2.3.14-1 [143 kB] 223s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 unixodbc-common all 2.3.14-1 [8792 B] 223s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbcinst2 arm64 2.3.14-1 [30.6 kB] 223s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 223s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libgpgmepp6t64 arm64 1.24.2-3ubuntu2 [117 kB] 223s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libpoppler147 arm64 25.03.0-11.1 [1149 kB] 225s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libpq5 arm64 18.1-2 [151 kB] 225s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 225s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 librttopo1 arm64 1.1.0-4build1 [188 kB] 225s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libspatialite8t64 arm64 5.1.0-3ubuntu1 [1816 kB] 229s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build2 [913 kB] 230s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgdal38 arm64 3.12.1+dfsg-1 [10.4 MB] 266s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 266s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 266s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 266s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 266s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 266s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 266s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 266s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 266s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 266s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 266s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 266s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 266s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 269s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 269s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 269s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 271s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-data all 2.2.28-8 [19.3 kB] 271s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-0 arm64 2.2.28-8 [53.0 kB] 271s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 271s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 271s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 271s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 271s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 333s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 333s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 335s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB] 335s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 336s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-e1071 arm64 1.7-17-1 [576 kB] 337s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-kernsmooth arm64 2.23-26-1build1 [93.6 kB] 337s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB] 337s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 339s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 339s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 340s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 340s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dotcall64 arm64 1.2-1 [35.9 kB] 340s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 343s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 343s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 343s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 347s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spam arm64 2.11-1-1 [2737 kB] 351s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 354s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-maps arm64 3.4.2.1-1 [2350 kB] 358s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fields arm64 16.3.1-1 [3762 kB] 365s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fnn arm64 1.1.4.1-1 [125 kB] 365s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-globals all 0.19.0-1 [160 kB] 365s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 365s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB] 366s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 368s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 368s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 368s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 371s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 371s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 371s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 374s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 374s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 374s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 374s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 374s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 376s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 378s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 378s Get:141 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 387s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 389s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 392s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-zoo arm64 1.8-15-1 [1025 kB] 394s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 394s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB] 397s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s2 arm64 1.1.9-1build1 [1766 kB] 400s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-units arm64 0.8-7+dfsg-2 [289 kB] 400s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sf arm64 1.0-19+dfsg-2build2 [3240 kB] 406s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 406s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xts arm64 0.14.1-1 [1189 kB] 411s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-intervals arm64 0.15.5-1 [602 kB] 413s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spacetime all 1.3-3-2 [2780 kB] 421s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stars all 0.7-0-1 [4415 kB] 429s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gstat arm64 2.1-3-2 [2328 kB] 436s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 496s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-terra arm64 1.8-70-1build2 [4198 kB] 506s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-raster arm64 3.6-31-2 [3148 kB] 512s Preconfiguring packages ... 512s Fetched 160 MB in 5min 28s (489 kB/s) 512s Selecting previously unselected package fonts-dejavu-mono. 512s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 512s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 512s Unpacking fonts-dejavu-mono (2.37-8build1) ... 512s Selecting previously unselected package fonts-dejavu-core. 512s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 512s Unpacking fonts-dejavu-core (2.37-8build1) ... 512s Selecting previously unselected package fontconfig-config. 512s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 513s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 513s Selecting previously unselected package libfontconfig1:arm64. 513s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 513s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 513s Selecting previously unselected package fontconfig. 513s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 513s Unpacking fontconfig (2.17.1-3ubuntu1) ... 513s Selecting previously unselected package gdal-data. 513s Preparing to unpack .../005-gdal-data_3.12.1+dfsg-1_all.deb ... 513s Unpacking gdal-data (3.12.1+dfsg-1) ... 513s Selecting previously unselected package gdal-plugins:arm64. 513s Preparing to unpack .../006-gdal-plugins_3.12.1+dfsg-1_arm64.deb ... 513s Unpacking gdal-plugins:arm64 (3.12.1+dfsg-1) ... 513s Selecting previously unselected package libabsl20260107:arm64. 513s Preparing to unpack .../007-libabsl20260107_20260107.0-1_arm64.deb ... 513s Unpacking libabsl20260107:arm64 (20260107.0-1) ... 513s Selecting previously unselected package libaec0:arm64. 513s Preparing to unpack .../008-libaec0_1.1.5-1_arm64.deb ... 513s Unpacking libaec0:arm64 (1.1.5-1) ... 513s Selecting previously unselected package libaom3:arm64. 513s Preparing to unpack .../009-libaom3_3.13.1-2_arm64.deb ... 513s Unpacking libaom3:arm64 (3.13.1-2) ... 513s Selecting previously unselected package libblas3:arm64. 513s Preparing to unpack .../010-libblas3_3.12.1-7ubuntu1_arm64.deb ... 513s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 513s Selecting previously unselected package libgfortran5:arm64. 513s Preparing to unpack .../011-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 513s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 513s Selecting previously unselected package liblapack3:arm64. 513s Preparing to unpack .../012-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 513s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 513s Selecting previously unselected package libarpack2t64:arm64. 514s Preparing to unpack .../013-libarpack2t64_3.9.1-6_arm64.deb ... 514s Unpacking libarpack2t64:arm64 (3.9.1-6) ... 514s Selecting previously unselected package libsuperlu7:arm64. 514s Preparing to unpack .../014-libsuperlu7_7.0.1+dfsg1-2_arm64.deb ... 514s Unpacking libsuperlu7:arm64 (7.0.1+dfsg1-2) ... 514s Selecting previously unselected package libarmadillo15. 514s Preparing to unpack .../015-libarmadillo15_1%3a15.2.1+dfsg-2_arm64.deb ... 514s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 514s Selecting previously unselected package libdav1d7:arm64. 514s Preparing to unpack .../016-libdav1d7_1.5.3-1_arm64.deb ... 514s Unpacking libdav1d7:arm64 (1.5.3-1) ... 514s Selecting previously unselected package libgav1-2:arm64. 514s Preparing to unpack .../017-libgav1-2_0.20.0-2build1_arm64.deb ... 514s Unpacking libgav1-2:arm64 (0.20.0-2build1) ... 514s Selecting previously unselected package libjpeg-turbo8:arm64. 514s Preparing to unpack .../018-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 514s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 514s Selecting previously unselected package libjpeg8:arm64. 514s Preparing to unpack .../019-libjpeg8_8c-2ubuntu11_arm64.deb ... 514s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 514s Selecting previously unselected package libyuv0:arm64. 514s Preparing to unpack .../020-libyuv0_0.0.1922.20260106-1_arm64.deb ... 514s Unpacking libyuv0:arm64 (0.0.1922.20260106-1) ... 514s Selecting previously unselected package libavif16:arm64. 514s Preparing to unpack .../021-libavif16_1.3.0-1ubuntu3_arm64.deb ... 514s Unpacking libavif16:arm64 (1.3.0-1ubuntu3) ... 514s Selecting previously unselected package libsnappy1v5:arm64. 514s Preparing to unpack .../022-libsnappy1v5_1.2.2-2_arm64.deb ... 514s Unpacking libsnappy1v5:arm64 (1.2.2-2) ... 514s Selecting previously unselected package libblosc1:arm64. 514s Preparing to unpack .../023-libblosc1_1.21.5+ds-2_arm64.deb ... 514s Unpacking libblosc1:arm64 (1.21.5+ds-2) ... 514s Selecting previously unselected package libpixman-1-0:arm64. 514s Preparing to unpack .../024-libpixman-1-0_0.46.4-1_arm64.deb ... 514s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 514s Selecting previously unselected package libxcb-render0:arm64. 514s Preparing to unpack .../025-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 514s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 514s Selecting previously unselected package libxcb-shm0:arm64. 514s Preparing to unpack .../026-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 514s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 514s Selecting previously unselected package libxrender1:arm64. 514s Preparing to unpack .../027-libxrender1_1%3a0.9.12-1_arm64.deb ... 514s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 514s Selecting previously unselected package libcairo2:arm64. 514s Preparing to unpack .../028-libcairo2_1.18.4-3_arm64.deb ... 514s Unpacking libcairo2:arm64 (1.18.4-3) ... 514s Selecting previously unselected package libcfitsio10t64:arm64. 514s Preparing to unpack .../029-libcfitsio10t64_4.6.3-1_arm64.deb ... 514s Unpacking libcfitsio10t64:arm64 (4.6.3-1) ... 514s Selecting previously unselected package libdatrie1:arm64. 515s Preparing to unpack .../030-libdatrie1_0.2.14-1_arm64.deb ... 515s Unpacking libdatrie1:arm64 (0.2.14-1) ... 515s Selecting previously unselected package libde265-0:arm64. 515s Preparing to unpack .../031-libde265-0_1.0.16-1build1_arm64.deb ... 515s Unpacking libde265-0:arm64 (1.0.16-1build1) ... 515s Selecting previously unselected package libdeflate0:arm64. 515s Preparing to unpack .../032-libdeflate0_1.23-2build1_arm64.deb ... 515s Unpacking libdeflate0:arm64 (1.23-2build1) ... 515s Selecting previously unselected package libfyba0t64:arm64. 515s Preparing to unpack .../033-libfyba0t64_4.1.1-11build2_arm64.deb ... 515s Unpacking libfyba0t64:arm64 (4.1.1-11build2) ... 515s Selecting previously unselected package libminizip1t64:arm64. 515s Preparing to unpack .../034-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 515s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 515s Selecting previously unselected package libfreexl1:arm64. 515s Preparing to unpack .../035-libfreexl1_2.0.0-1build3_arm64.deb ... 515s Unpacking libfreexl1:arm64 (2.0.0-1build3) ... 515s Selecting previously unselected package libgeos3.14.1:arm64. 515s Preparing to unpack .../036-libgeos3.14.1_3.14.1-2_arm64.deb ... 515s Unpacking libgeos3.14.1:arm64 (3.14.1-2) ... 515s Selecting previously unselected package libgeos-c1t64:arm64. 515s Preparing to unpack .../037-libgeos-c1t64_3.14.1-2_arm64.deb ... 515s Unpacking libgeos-c1t64:arm64 (3.14.1-2) ... 515s Selecting previously unselected package proj-data. 515s Preparing to unpack .../038-proj-data_9.7.1-1_all.deb ... 515s Unpacking proj-data (9.7.1-1) ... 515s Selecting previously unselected package libjbig0:arm64. 515s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 515s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 515s Selecting previously unselected package liblerc4:arm64. 515s Preparing to unpack .../040-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 515s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 515s Selecting previously unselected package libsharpyuv0:arm64. 515s Preparing to unpack .../041-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 515s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 515s Selecting previously unselected package libwebp7:arm64. 515s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_arm64.deb ... 515s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 515s Selecting previously unselected package libtiff6:arm64. 515s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 515s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 515s Selecting previously unselected package libproj25:arm64. 515s Preparing to unpack .../044-libproj25_9.7.1-1_arm64.deb ... 515s Unpacking libproj25:arm64 (9.7.1-1) ... 515s Selecting previously unselected package libgeotiff5:arm64. 515s Preparing to unpack .../045-libgeotiff5_1.7.4-1build1_arm64.deb ... 515s Unpacking libgeotiff5:arm64 (1.7.4-1build1) ... 515s Selecting previously unselected package libgif7:arm64. 515s Preparing to unpack .../046-libgif7_5.2.2-1ubuntu3_arm64.deb ... 515s Unpacking libgif7:arm64 (5.2.2-1ubuntu3) ... 515s Selecting previously unselected package libsz2:arm64. 515s Preparing to unpack .../047-libsz2_1.1.5-1_arm64.deb ... 515s Unpacking libsz2:arm64 (1.1.5-1) ... 515s Selecting previously unselected package libhdf4-0:arm64. 516s Preparing to unpack .../048-libhdf4-0_4.3.1-2_arm64.deb ... 516s Unpacking libhdf4-0:arm64 (4.3.1-2) ... 516s Selecting previously unselected package libhdf5-310:arm64. 516s Preparing to unpack .../049-libhdf5-310_1.14.6+repack-2_arm64.deb ... 516s Unpacking libhdf5-310:arm64 (1.14.6+repack-2) ... 516s Selecting previously unselected package libheif-plugin-aomdec:arm64. 516s Preparing to unpack .../050-libheif-plugin-aomdec_1.21.2-1_arm64.deb ... 516s Unpacking libheif-plugin-aomdec:arm64 (1.21.2-1) ... 516s Selecting previously unselected package libheif-plugin-libde265:arm64. 516s Preparing to unpack .../051-libheif-plugin-libde265_1.21.2-1_arm64.deb ... 516s Unpacking libheif-plugin-libde265:arm64 (1.21.2-1) ... 516s Selecting previously unselected package libheif1:arm64. 516s Preparing to unpack .../052-libheif1_1.21.2-1_arm64.deb ... 516s Unpacking libheif1:arm64 (1.21.2-1) ... 516s Selecting previously unselected package libhwy1t64:arm64. 516s Preparing to unpack .../053-libhwy1t64_1.3.0-2_arm64.deb ... 516s Unpacking libhwy1t64:arm64 (1.3.0-2) ... 516s Selecting previously unselected package liblcms2-2:arm64. 516s Preparing to unpack .../054-liblcms2-2_2.17-1_arm64.deb ... 516s Unpacking liblcms2-2:arm64 (2.17-1) ... 516s Selecting previously unselected package libjxl0.11:arm64. 516s Preparing to unpack .../055-libjxl0.11_0.11.1-6ubuntu1_arm64.deb ... 516s Unpacking libjxl0.11:arm64 (0.11.1-6ubuntu1) ... 516s Selecting previously unselected package liburiparser1:arm64. 516s Preparing to unpack .../056-liburiparser1_0.9.8+dfsg-2_arm64.deb ... 516s Unpacking liburiparser1:arm64 (0.9.8+dfsg-2) ... 516s Selecting previously unselected package libkmlbase1t64:arm64. 516s Preparing to unpack .../057-libkmlbase1t64_1.3.0-13_arm64.deb ... 516s Unpacking libkmlbase1t64:arm64 (1.3.0-13) ... 516s Selecting previously unselected package libkmldom1t64:arm64. 516s Preparing to unpack .../058-libkmldom1t64_1.3.0-13_arm64.deb ... 516s Unpacking libkmldom1t64:arm64 (1.3.0-13) ... 516s Selecting previously unselected package libkmlengine1t64:arm64. 516s Preparing to unpack .../059-libkmlengine1t64_1.3.0-13_arm64.deb ... 516s Unpacking libkmlengine1t64:arm64 (1.3.0-13) ... 516s Selecting previously unselected package libgomp1:arm64. 516s Preparing to unpack .../060-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 516s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 516s Selecting previously unselected package libmuparser2v5:arm64. 516s Preparing to unpack .../061-libmuparser2v5_2.3.4-2_arm64.deb ... 516s Unpacking libmuparser2v5:arm64 (2.3.4-2) ... 516s Selecting previously unselected package mysql-common. 516s Preparing to unpack .../062-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 516s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 516s Selecting previously unselected package libmysqlclient24:arm64. 516s Preparing to unpack .../063-libmysqlclient24_8.4.8-0ubuntu1_arm64.deb ... 516s Unpacking libmysqlclient24:arm64 (8.4.8-0ubuntu1) ... 516s Selecting previously unselected package libhdf5-hl-310:arm64. 516s Preparing to unpack .../064-libhdf5-hl-310_1.14.6+repack-2_arm64.deb ... 516s Unpacking libhdf5-hl-310:arm64 (1.14.6+repack-2) ... 517s Selecting previously unselected package libnetcdf22:arm64. 517s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 517s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 517s Selecting previously unselected package libltdl7:arm64. 517s Preparing to unpack .../066-libltdl7_2.5.4-9_arm64.deb ... 517s Unpacking libltdl7:arm64 (2.5.4-9) ... 517s Selecting previously unselected package libodbc2:arm64. 517s Preparing to unpack .../067-libodbc2_2.3.14-1_arm64.deb ... 517s Unpacking libodbc2:arm64 (2.3.14-1) ... 517s Selecting previously unselected package unixodbc-common. 517s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 517s Unpacking unixodbc-common (2.3.14-1) ... 517s Selecting previously unselected package libodbcinst2:arm64. 517s Preparing to unpack .../069-libodbcinst2_2.3.14-1_arm64.deb ... 517s Unpacking libodbcinst2:arm64 (2.3.14-1) ... 517s Selecting previously unselected package libopenjp2-7:arm64. 517s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_arm64.deb ... 517s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 517s Selecting previously unselected package libgpgmepp6t64:arm64. 517s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_arm64.deb ... 517s Unpacking libgpgmepp6t64:arm64 (1.24.2-3ubuntu2) ... 517s Selecting previously unselected package libpoppler147:arm64. 517s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_arm64.deb ... 517s Unpacking libpoppler147:arm64 (25.03.0-11.1) ... 517s Selecting previously unselected package libpq5:arm64. 517s Preparing to unpack .../073-libpq5_18.1-2_arm64.deb ... 517s Unpacking libpq5:arm64 (18.1-2) ... 517s Selecting previously unselected package libqhull-r8.0:arm64. 517s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_arm64.deb ... 517s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 517s Selecting previously unselected package librttopo1:arm64. 517s Preparing to unpack .../075-librttopo1_1.1.0-4build1_arm64.deb ... 517s Unpacking librttopo1:arm64 (1.1.0-4build1) ... 517s Selecting previously unselected package libspatialite8t64:arm64. 517s Preparing to unpack .../076-libspatialite8t64_5.1.0-3ubuntu1_arm64.deb ... 517s Unpacking libspatialite8t64:arm64 (5.1.0-3ubuntu1) ... 517s Selecting previously unselected package libxerces-c3.2t64:arm64. 517s Preparing to unpack .../077-libxerces-c3.2t64_3.2.4+debian-1.3build2_arm64.deb ... 517s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build2) ... 517s Selecting previously unselected package libgdal38:arm64. 517s Preparing to unpack .../078-libgdal38_3.12.1+dfsg-1_arm64.deb ... 517s Unpacking libgdal38:arm64 (3.12.1+dfsg-1) ... 518s Selecting previously unselected package libgraphite2-3:arm64. 518s Preparing to unpack .../079-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 518s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 518s Selecting previously unselected package libharfbuzz0b:arm64. 518s Preparing to unpack .../080-libharfbuzz0b_12.3.2-1_arm64.deb ... 518s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 518s Selecting previously unselected package x11-common. 518s Preparing to unpack .../081-x11-common_1%3a7.7+24ubuntu1_all.deb ... 518s Unpacking x11-common (1:7.7+24ubuntu1) ... 518s Selecting previously unselected package libice6:arm64. 518s Preparing to unpack .../082-libice6_2%3a1.1.1-1build1_arm64.deb ... 518s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 518s Selecting previously unselected package libthai-data. 518s Preparing to unpack .../083-libthai-data_0.1.30-1_all.deb ... 518s Unpacking libthai-data (0.1.30-1) ... 518s Selecting previously unselected package libthai0:arm64. 518s Preparing to unpack .../084-libthai0_0.1.30-1_arm64.deb ... 518s Unpacking libthai0:arm64 (0.1.30-1) ... 518s Selecting previously unselected package libpango-1.0-0:arm64. 518s Preparing to unpack .../085-libpango-1.0-0_1.57.0-1_arm64.deb ... 518s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 518s Selecting previously unselected package libpangoft2-1.0-0:arm64. 518s Preparing to unpack .../086-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 518s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 518s Selecting previously unselected package libpangocairo-1.0-0:arm64. 518s Preparing to unpack .../087-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 518s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 518s Selecting previously unselected package libpaper2:arm64. 518s Preparing to unpack .../088-libpaper2_2.2.5-0.3build1_arm64.deb ... 518s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 518s Selecting previously unselected package libpaper-utils. 518s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 518s Unpacking libpaper-utils (2.2.5-0.3build1) ... 518s Selecting previously unselected package libsm6:arm64. 518s Preparing to unpack .../090-libsm6_2%3a1.2.6-1build1_arm64.deb ... 518s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 518s Selecting previously unselected package libtcl8.6:arm64. 518s Preparing to unpack .../091-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 518s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 518s Selecting previously unselected package libxft2:arm64. 518s Preparing to unpack .../092-libxft2_2.3.6-1build2_arm64.deb ... 518s Unpacking libxft2:arm64 (2.3.6-1build2) ... 518s Selecting previously unselected package libxss1:arm64. 518s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_arm64.deb ... 518s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 518s Selecting previously unselected package libtk8.6:arm64. 518s Preparing to unpack .../094-libtk8.6_8.6.17-1_arm64.deb ... 518s Unpacking libtk8.6:arm64 (8.6.17-1) ... 519s Selecting previously unselected package libudunits2-data. 519s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 519s Unpacking libudunits2-data (2.2.28-8) ... 519s Selecting previously unselected package libudunits2-0:arm64. 519s Preparing to unpack .../096-libudunits2-0_2.2.28-8_arm64.deb ... 519s Unpacking libudunits2-0:arm64 (2.2.28-8) ... 519s Selecting previously unselected package libxt6t64:arm64. 519s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 519s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 519s Selecting previously unselected package zip. 519s Preparing to unpack .../098-zip_3.0-15ubuntu3_arm64.deb ... 519s Unpacking zip (3.0-15ubuntu3) ... 519s Selecting previously unselected package unzip. 519s Preparing to unpack .../099-unzip_6.0-29ubuntu1_arm64.deb ... 519s Unpacking unzip (6.0-29ubuntu1) ... 519s Selecting previously unselected package xdg-utils. 519s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu2_all.deb ... 519s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 519s Selecting previously unselected package r-base-core. 519s Preparing to unpack .../101-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 519s Unpacking r-base-core (4.5.2-1ubuntu2) ... 519s Selecting previously unselected package r-cran-abind. 519s Preparing to unpack .../102-r-cran-abind_1.4-8-1build1_all.deb ... 519s Unpacking r-cran-abind (1.4-8-1build1) ... 519s Selecting previously unselected package r-cran-mass. 519s Preparing to unpack .../103-r-cran-mass_7.3-65-1_arm64.deb ... 519s Unpacking r-cran-mass (7.3-65-1) ... 519s Selecting previously unselected package r-cran-class. 519s Preparing to unpack .../104-r-cran-class_7.3-23-1_arm64.deb ... 519s Unpacking r-cran-class (7.3-23-1) ... 519s Selecting previously unselected package r-cran-proxy. 519s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_arm64.deb ... 519s Unpacking r-cran-proxy (0.4-27-1) ... 519s Selecting previously unselected package r-cran-e1071. 519s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_arm64.deb ... 519s Unpacking r-cran-e1071 (1.7-17-1) ... 519s Selecting previously unselected package r-cran-kernsmooth. 520s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_arm64.deb ... 520s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 520s Selecting previously unselected package r-cran-classint. 520s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_arm64.deb ... 520s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 520s Selecting previously unselected package r-cran-cli. 520s Preparing to unpack .../109-r-cran-cli_3.6.4-1_arm64.deb ... 520s Unpacking r-cran-cli (3.6.4-1) ... 520s Selecting previously unselected package r-cran-codetools. 520s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 520s Unpacking r-cran-codetools (0.2-20-1build1) ... 520s Selecting previously unselected package r-cran-dbi. 520s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 520s Unpacking r-cran-dbi (1.2.3-1build1) ... 520s Selecting previously unselected package r-cran-digest. 520s Preparing to unpack .../112-r-cran-digest_0.6.39-1_arm64.deb ... 520s Unpacking r-cran-digest (0.6.39-1) ... 520s Selecting previously unselected package r-cran-dotcall64. 520s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_arm64.deb ... 520s Unpacking r-cran-dotcall64 (1.2-1) ... 520s Selecting previously unselected package r-cran-farver. 520s Preparing to unpack .../114-r-cran-farver_2.1.2-1_arm64.deb ... 520s Unpacking r-cran-farver (2.1.2-1) ... 520s Selecting previously unselected package r-cran-littler. 520s Preparing to unpack .../115-r-cran-littler_0.3.22-1_arm64.deb ... 520s Unpacking r-cran-littler (0.3.22-1) ... 520s Selecting previously unselected package r-cran-pkgkitten. 520s Preparing to unpack .../116-r-cran-pkgkitten_0.2.4-1_all.deb ... 520s Unpacking r-cran-pkgkitten (0.2.4-1) ... 520s Selecting previously unselected package r-cran-rcpp. 520s Preparing to unpack .../117-r-cran-rcpp_1.1.0-1_arm64.deb ... 520s Unpacking r-cran-rcpp (1.1.0-1) ... 520s Selecting previously unselected package r-cran-spam. 520s Preparing to unpack .../118-r-cran-spam_2.11-1-1_arm64.deb ... 520s Unpacking r-cran-spam (2.11-1-1) ... 520s Selecting previously unselected package r-cran-viridislite. 520s Preparing to unpack .../119-r-cran-viridislite_0.4.3-1_all.deb ... 520s Unpacking r-cran-viridislite (0.4.3-1) ... 520s Selecting previously unselected package r-cran-maps. 520s Preparing to unpack .../120-r-cran-maps_3.4.2.1-1_arm64.deb ... 520s Unpacking r-cran-maps (3.4.2.1-1) ... 520s Selecting previously unselected package r-cran-fields. 521s Preparing to unpack .../121-r-cran-fields_16.3.1-1_arm64.deb ... 521s Unpacking r-cran-fields (16.3.1-1) ... 521s Selecting previously unselected package r-cran-fnn. 521s Preparing to unpack .../122-r-cran-fnn_1.1.4.1-1_arm64.deb ... 521s Unpacking r-cran-fnn (1.1.4.1-1) ... 521s Selecting previously unselected package r-cran-globals. 521s Preparing to unpack .../123-r-cran-globals_0.19.0-1_all.deb ... 521s Unpacking r-cran-globals (0.19.0-1) ... 521s Selecting previously unselected package r-cran-listenv. 521s Preparing to unpack .../124-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 521s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 521s Selecting previously unselected package r-cran-parallelly. 521s Preparing to unpack .../125-r-cran-parallelly_1.42.0-1_arm64.deb ... 521s Unpacking r-cran-parallelly (1.42.0-1) ... 521s Selecting previously unselected package r-cran-future. 521s Preparing to unpack .../126-r-cran-future_1.34.0+dfsg-1_all.deb ... 521s Unpacking r-cran-future (1.34.0+dfsg-1) ... 521s Selecting previously unselected package r-cran-future.apply. 521s Preparing to unpack .../127-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 521s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 521s Selecting previously unselected package r-cran-glue. 521s Preparing to unpack .../128-r-cran-glue_1.8.0-1_arm64.deb ... 521s Unpacking r-cran-glue (1.8.0-1) ... 521s Selecting previously unselected package r-cran-rlang. 521s Preparing to unpack .../129-r-cran-rlang_1.1.5-3_arm64.deb ... 521s Unpacking r-cran-rlang (1.1.5-3) ... 521s Selecting previously unselected package r-cran-lifecycle. 521s Preparing to unpack .../130-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 521s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 521s Selecting previously unselected package r-cran-gtable. 521s Preparing to unpack .../131-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 521s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 521s Selecting previously unselected package r-cran-isoband. 521s Preparing to unpack .../132-r-cran-isoband_0.2.7-1_arm64.deb ... 521s Unpacking r-cran-isoband (0.2.7-1) ... 521s Selecting previously unselected package r-cran-s7. 521s Preparing to unpack .../133-r-cran-s7_0.2.0-1_arm64.deb ... 521s Unpacking r-cran-s7 (0.2.0-1) ... 521s Selecting previously unselected package r-cran-labeling. 521s Preparing to unpack .../134-r-cran-labeling_0.4.3-1_all.deb ... 521s Unpacking r-cran-labeling (0.4.3-1) ... 521s Selecting previously unselected package r-cran-r6. 521s Preparing to unpack .../135-r-cran-r6_2.6.1-1_all.deb ... 521s Unpacking r-cran-r6 (2.6.1-1) ... 521s Selecting previously unselected package r-cran-rcolorbrewer. 522s Preparing to unpack .../136-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 522s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 522s Selecting previously unselected package r-cran-scales. 522s Preparing to unpack .../137-r-cran-scales_1.4.0-1_all.deb ... 522s Unpacking r-cran-scales (1.4.0-1) ... 522s Selecting previously unselected package r-cran-vctrs. 522s Preparing to unpack .../138-r-cran-vctrs_0.6.5-1_arm64.deb ... 522s Unpacking r-cran-vctrs (0.6.5-1) ... 522s Selecting previously unselected package r-cran-withr. 522s Preparing to unpack .../139-r-cran-withr_3.0.2+dfsg-1_all.deb ... 522s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 522s Selecting previously unselected package r-cran-ggplot2. 522s Preparing to unpack .../140-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 522s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 522s Selecting previously unselected package r-cran-lattice. 522s Preparing to unpack .../141-r-cran-lattice_0.22-7-1_arm64.deb ... 522s Unpacking r-cran-lattice (0.22-7-1) ... 522s Selecting previously unselected package r-cran-sp. 522s Preparing to unpack .../142-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ... 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(1.8-70-1build2) ... 527s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 527s Setting up r-cran-stars (0.7-0-1) ... 527s Setting up r-cran-sftime (0.2-0-6) ... 527s Setting up r-cran-gstat (2.1-3-2) ... 527s Setting up r-cran-raster (3.6-31-2) ... 527s Processing triggers for install-info (7.2-5) ... 527s Processing triggers for libc-bin (2.42-2ubuntu4) ... 527s Processing triggers for man-db (2.13.1-1build1) ... 529s autopkgtest [23:59:18]: test run-unit-test: [----------------------- 529s BEGIN TEST allier.R 529s 529s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 529s Copyright (C) 2025 The R Foundation for Statistical Computing 529s Platform: aarch64-unknown-linux-gnu 529s 529s R is free software and comes with ABSOLUTELY NO WARRANTY. 529s You are welcome to redistribute it under certain conditions. 529s Type 'license()' or 'licence()' for distribution details. 529s 529s R is a collaborative project with many contributors. 529s Type 'contributors()' for more information and 529s 'citation()' on how to cite R or R packages in publications. 529s 529s Type 'demo()' for some demos, 'help()' for on-line help, or 529s 'help.start()' for an HTML browser interface to help. 529s Type 'q()' to quit R. 529s 529s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 529s > library(sp) 529s > library(gstat) 530s > 530s > # some data 530s > x <- c(215, 330, 410, 470, 545) 530s > y <- c(230, 310, 330, 340, 365) 530s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 530s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 530s > Allier <- data.frame(x, y, fc, por) 530s > coordinates(Allier) = ~x+y 530s > 530s > # gstat object for co-kriging using linear model of co-regionalization 530s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 530s + model=vgm(0.00247, "Sph", 480, 0.00166)) 530s > g <- gstat(g, id="por", formula=por~1, data=Allier, 530s + model=vgm(0.00239, "Sph", 480, 0.00118)) 530s > g <- gstat(g, id=c("fc", "por"), 530s + model=vgm(0.00151, "Sph", 480, -0.00124)) 530s > 530s > # predict at single point 530s > g$set = list(choleski = 0) # LDL' 530s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 530s Linear Model of Coregionalization found. Good. 530s [using ordinary cokriging] 530s we're at location X: 450 Y: 350 Z: 0 530s zero block size 530s we're at point X: 450 Y: 350 Z: 0 530s 530s # X: 530s #Matrix: 10 by 2 530s rbind( 530s c( 1.000000, 0.000000), # row 1 530s c( 1.000000, 0.000000), # row 2 530s c( 1.000000, 0.000000), # row 3 530s c( 1.000000, 0.000000), # row 4 530s c( 1.000000, 0.000000), # row 5 530s c( 0.000000, 1.000000), # row 6 530s c( 0.000000, 1.000000), # row 7 530s c( 0.000000, 1.000000), # row 8 530s c( 0.000000, 1.000000), # row 9 530s c( 0.000000, 1.000000) # row 10 530s ) 530s [using generalized covariances: max_val - semivariance()] 530s # Covariances (x_i, x_j) matrix C (upper triangle): 530s #Matrix: 10 by 10 530s rbind( 530s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 530s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 530s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 530s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 530s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 530s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 530s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 530s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 530s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 530s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 530s ) 530s 530s # glm->C, LDL' decomposed:: 530s #Matrix: 10 by 10 530s rbind( 530s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 530s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 530s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 530s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 530s ) 530s 530s # X'C-1 X: 530s #Matrix: 2 by 2 530s rbind( 530s c(665.433994, -232.313340), # row 1 530s c(-232.313340, 729.440848) # row 2 530s ) 530s 530s # beta: 530s #Vector: dim: 2 530s c( 0.244216, 0.440933) 530s # Cov(beta), (X'C-1 X)-1: 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.001691, 0.000538), # row 1 530s c( 0.000538, 0.001542) # row 2 530s ) 530s 530s # Corr(beta): 530s #Matrix: 2 by 2 530s rbind( 530s c( 1.000000, 0.333447), # row 1 530s c( 0.333447, 1.000000) # row 2 530s ) 530s 530s # X0 (X values at prediction location x0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 1.000000, 0.000000), # row 1 530s c( 0.000000, 1.000000) # row 2 530s ) 530s 530s # BLUE(mu), E(y(x0)) = X0'beta: 530s #Vector: dim: 2 530s c( 0.244216, 0.440933) 530s # Covariances (x_i, x_0), C0: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.000638, 0.000390), # row 1 530s c( 0.001516, 0.000927), # row 2 530s c( 0.002126, 0.001300), # row 3 530s c( 0.002298, 0.001405), # row 4 530s c( 0.001738, 0.001062), # row 5 530s c( 0.000390, 0.000618), # row 6 530s c( 0.000927, 0.001467), # row 7 530s c( 0.001300, 0.002057), # row 8 530s c( 0.001405, 0.002223), # row 9 530s c( 0.001062, 0.001681) # row 10 530s ) 530s 530s # C-1 C0: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.008927, -0.017995), # row 1 530s c( 0.061935, -0.028550), # row 2 530s c( 0.225195, 0.078344), # row 3 530s c( 0.356735, 0.190177), # row 4 530s c( 0.094128, -0.023136), # row 5 530s c(-0.021119, 0.004935), # row 6 530s c(-0.033508, 0.055601), # row 7 530s c( 0.091947, 0.242576), # row 8 530s c( 0.223200, 0.398927), # row 9 530s c(-0.027153, 0.088995) # row 10 530s ) 530s 530s # [a] Cov_ij(B,B) or Cov_ij(0,0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.004130, 0.000270), # row 1 530s c( 0.000270, 0.003570) # row 2 530s ) 530s 530s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.000129, -0.000107), # row 1 530s c(-0.000107, 0.000089) # row 2 530s ) 530s 530s # [b] c0'C-1 c0: 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.001926, 0.001532), # row 1 530s c( 0.001532, 0.001931) # row 2 530s ) 530s 530s # Best Linear Unbiased Predictor: 530s #Vector: dim: 2 530s c( 0.253090, 0.441258) 530s # MSPE ([a]-[b]+[c]): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.002332, -0.001369), # row 1 530s c(-0.001369, 0.001729) # row 2 530s ) 530s 530s # kriging weights: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.071177, -0.064988), # row 1 530s c( 0.108451, -0.066123), # row 2 530s c( 0.268160, 0.043141), # row 3 530s c( 0.401959, 0.153312), # row 4 530s c( 0.150253, -0.065342), # row 5 530s c(-0.076273, 0.056759), # row 6 530s c(-0.077605, 0.093781), # row 7 530s c( 0.050632, 0.277731), # row 8 530s c( 0.179933, 0.435972), # row 9 530s c(-0.076688, 0.135756) # row 10 530s ) 530s 530s 530s > g$set = list(choleski = 1) # Choleski 530s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 530s Linear Model of Coregionalization found. Good. 530s [using ordinary cokriging] 530s we're at location X: 450 Y: 350 Z: 0 530s zero block size 530s we're at point X: 450 Y: 350 Z: 0 530s 530s # X: 530s #Matrix: 10 by 2 530s rbind( 530s c( 1.000000, 0.000000), # row 1 530s c( 1.000000, 0.000000), # row 2 530s c( 1.000000, 0.000000), # row 3 530s c( 1.000000, 0.000000), # row 4 530s c( 1.000000, 0.000000), # row 5 530s c( 0.000000, 1.000000), # row 6 530s c( 0.000000, 1.000000), # row 7 530s c( 0.000000, 1.000000), # row 8 530s c( 0.000000, 1.000000), # row 9 530s c( 0.000000, 1.000000) # row 10 530s ) 530s [using generalized covariances: max_val - semivariance()] 530s # Covariances (x_i, x_j) matrix C (upper triangle): 530s #Matrix: 10 by 10 530s rbind( 530s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 530s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 530s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 530s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 530s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 530s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 530s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 530s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 530s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 530s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 530s ) 530s 530s # glm->C, Choleski decomposed:: 530s #Matrix: 10 by 10 530s rbind( 530s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 530s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 530s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 530s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 530s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 530s ) 530s 530s # X'C-1 X: 530s #Matrix: 2 by 2 530s rbind( 530s c(665.433994, -232.313340), # row 1 530s c(-232.313340, 729.440848) # row 2 530s ) 530s 530s # beta: 530s #Vector: dim: 2 530s c( 0.244216, 0.440933) 530s # Cov(beta), (X'C-1 X)-1: 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.001691, 0.000538), # row 1 530s c( 0.000538, 0.001542) # row 2 530s ) 530s 530s # Corr(beta): 530s #Matrix: 2 by 2 530s rbind( 530s c( 1.000000, 0.333447), # row 1 530s c( 0.333447, 1.000000) # row 2 530s ) 530s 530s # X0 (X values at prediction location x0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 1.000000, 0.000000), # row 1 530s c( 0.000000, 1.000000) # row 2 530s ) 530s 530s # BLUE(mu), E(y(x0)) = X0'beta: 530s #Vector: dim: 2 530s c( 0.244216, 0.440933) 530s # Covariances (x_i, x_0), C0: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.000638, 0.000390), # row 1 530s c( 0.001516, 0.000927), # row 2 530s c( 0.002126, 0.001300), # row 3 530s c( 0.002298, 0.001405), # row 4 530s c( 0.001738, 0.001062), # row 5 530s c( 0.000390, 0.000618), # row 6 530s c( 0.000927, 0.001467), # row 7 530s c( 0.001300, 0.002057), # row 8 530s c( 0.001405, 0.002223), # row 9 530s c( 0.001062, 0.001681) # row 10 530s ) 530s 530s # C-1 C0: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.008927, -0.017995), # row 1 530s c( 0.061935, -0.028550), # row 2 530s c( 0.225195, 0.078344), # row 3 530s c( 0.356735, 0.190177), # row 4 530s c( 0.094128, -0.023136), # row 5 530s c(-0.021119, 0.004935), # row 6 530s c(-0.033508, 0.055601), # row 7 530s c( 0.091947, 0.242576), # row 8 530s c( 0.223200, 0.398927), # row 9 530s c(-0.027153, 0.088995) # row 10 530s ) 530s 530s # [a] Cov_ij(B,B) or Cov_ij(0,0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.004130, 0.000270), # row 1 530s c( 0.000270, 0.003570) # row 2 530s ) 530s 530s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.000129, -0.000107), # row 1 530s c(-0.000107, 0.000089) # row 2 530s ) 530s 530s # [b] c0'C-1 c0: 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.001926, 0.001532), # row 1 530s c( 0.001532, 0.001931) # row 2 530s ) 530s 530s # Best Linear Unbiased Predictor: 530s #Vector: dim: 2 530s c( 0.253090, 0.441258) 530s # MSPE ([a]-[b]+[c]): 530s #Matrix: 2 by 2 530s rbind( 530s c( 0.002332, -0.001369), # row 1 530s c(-0.001369, 0.001729) # row 2 530s ) 530s 530s # kriging weights: 530s #Matrix: 10 by 2 530s rbind( 530s c( 0.071177, -0.064988), # row 1 530s c( 0.108451, -0.066123), # row 2 530s c( 0.268160, 0.043141), # row 3 530s c( 0.401959, 0.153312), # row 4 530s c( 0.150253, -0.065342), # row 5 530s c(-0.076273, 0.056759), # row 6 530s c(-0.077605, 0.093781), # row 7 530s c( 0.050632, 0.277731), # row 8 530s c( 0.179933, 0.435972), # row 9 530s c(-0.076688, 0.135756) # row 10 530s ) 530s 530s 530s > all.equal(A,B) 530s [1] TRUE 530s > 530s > # TRUE 530s > 530s BEGIN TEST blockkr.R 530s 530s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 530s Copyright (C) 2025 The R Foundation for Statistical Computing 530s Platform: aarch64-unknown-linux-gnu 530s 530s R is free software and comes with ABSOLUTELY NO WARRANTY. 530s You are welcome to redistribute it under certain conditions. 530s Type 'license()' or 'licence()' for distribution details. 530s 530s R is a collaborative project with many contributors. 530s Type 'contributors()' for more information and 530s 'citation()' on how to cite R or R packages in publications. 530s 530s Type 'demo()' for some demos, 'help()' for on-line help, or 530s 'help.start()' for an HTML browser interface to help. 530s Type 'q()' to quit R. 530s 530s > library(sp) 530s > data(meuse) 530s > coordinates(meuse) = c("x", "y") 530s > new.locs <- SpatialPoints(data.frame( 530s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 530s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 530s > library(gstat) 531s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 531s + block = c(40,40), nmax = 40) 531s [using ordinary kriging] 531s coordinates var1.pred var1.var 531s 1 (181170, 333250) 268.7576 19447.67 531s 2 (180310, 332189) 663.4915 16991.33 531s 3 (180205, 331707) 251.4606 21579.71 531s 4 (178673, 330066) 532.5776 73807.91 531s 5 (178770, 330675) 664.4039 23589.17 531s 6 (178270, 331075) 565.5436 155113.23 531s > 531s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 531s > 531s > disc = c(-15,-5,5,15) 531s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 531s > block.irreg 531s x y 531s 1 -15 -15 531s 2 -5 -15 531s 3 5 -15 531s 4 15 -15 531s 5 -15 -5 531s 6 -5 -5 531s 7 5 -5 531s 8 15 -5 531s 9 -15 5 531s 10 -5 5 531s 11 5 5 531s 12 15 5 531s 13 -15 15 531s 14 -5 15 531s 15 5 15 531s 16 15 15 531s > 531s > # first disable default Gaussian quadrature used for block integration, by 531s > # setting nblockdiscr explicitly: 531s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 531s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 531s [using ordinary kriging] 531s coordinates var1.pred var1.var 531s 1 (181170, 333250) 268.7324 19568.76 531s > # now pass the same block discretization as block.irreg: 531s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 531s + block = block.irreg, nmax = 40) 531s [using ordinary kriging] 531s coordinates var1.pred var1.var 531s 1 (181170, 333250) 268.7324 19568.76 531s > # check weights argument: 531s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 531s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 531s + block = block.irreg, nmax = 40) 531s [using ordinary kriging] 531s coordinates var1.pred var1.var 531s 1 (181170, 333250) 268.7324 19568.76 531s > 531s BEGIN TEST covtable.R 531s 531s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 531s Copyright (C) 2025 The R Foundation for Statistical Computing 531s Platform: aarch64-unknown-linux-gnu 531s 531s R is free software and comes with ABSOLUTELY NO WARRANTY. 531s You are welcome to redistribute it under certain conditions. 531s Type 'license()' or 'licence()' for distribution details. 531s 531s R is a collaborative project with many contributors. 531s Type 'contributors()' for more information and 531s 'citation()' on how to cite R or R packages in publications. 531s 531s Type 'demo()' for some demos, 'help()' for on-line help, or 531s 'help.start()' for an HTML browser interface to help. 531s Type 'q()' to quit R. 531s 531s > library(gstat) 532s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 532s > d$z=1:4 532s > vv=vgm(model = "Tab", covtable = 532s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 532s > vv 532s model psill maxdist 532s 1 Tab NA 1 532s covariance table: 532s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 532s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 532s [using ordinary kriging] 532s x y var1.pred var1.var 532s 1 0 0 2.5 1.017767 532s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 532s [using ordinary kriging] 532s x y var1.pred var1.var 532s 1 0 0 2.5 1.017863 532s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 532s [using ordinary kriging] 532s x y var1.pred var1.var 532s 1 0 0 1.5 1.267767 532s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 532s [using ordinary kriging] 532s x y var1.pred var1.var 532s 1 0 0 1.5 1.267863 532s > 532s BEGIN TEST cv.R 532s 532s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 532s Copyright (C) 2025 The R Foundation for Statistical Computing 532s Platform: aarch64-unknown-linux-gnu 532s 532s R is free software and comes with ABSOLUTELY NO WARRANTY. 532s You are welcome to redistribute it under certain conditions. 532s Type 'license()' or 'licence()' for distribution details. 532s 532s R is a collaborative project with many contributors. 532s Type 'contributors()' for more information and 532s 'citation()' on how to cite R or R packages in publications. 532s 532s Type 'demo()' for some demos, 'help()' for on-line help, or 532s 'help.start()' for an HTML browser interface to help. 532s Type 'q()' to quit R. 532s 532s > # try bivariate cokriging; cross validate first variable 532s > library(sp) 532s > data(meuse) 532s > library(gstat) 532s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 533s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 533s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 533s > v=variogram(g) 533s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 533s > g=fit.lmc(v, g) 533s > g 533s data: 533s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 533s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 533s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 533s variograms: 533s model psill range 533s log-zinc Sph 0.7132435 1000 533s log-lead Sph 0.6133020 1000 533s log-copper Sph 0.3634211 1000 533s log-zinc.log-lead Sph 0.6367012 1000 533s log-zinc.log-copper Sph 0.4570044 1000 533s log-lead.log-copper Sph 0.3934910 1000 533s ~x + y 533s > set.seed(13131) 533s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Warning message: 533s In checkNames(value) : 533s attempt to set invalid names: this may lead to problems later on. See ?make.names 533s log.zinc.pred log.zinc.var observed residual 533s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 533s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 533s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 533s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 533s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 533s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 533s zscore fold x y 533s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 533s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 533s Median :-0.10755 Median :3.000 Median :179991 Median :331633 533s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 533s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 533s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 533s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Intrinsic Correlation found. Good. 533s [using ordinary cokriging] 533s Warning message: 533s In checkNames(value) : 533s attempt to set invalid names: this may lead to problems later on. See ?make.names 533s log.zinc.pred log.zinc.var observed residual 533s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 533s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 533s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 533s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 533s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 533s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 533s zscore fold x y 533s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 533s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 533s Median : 0.007242 Median :3.000 Median :179991 Median :331633 533s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 533s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 533s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 533s > 533s BEGIN TEST cv3d.R 533s 533s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 533s Copyright (C) 2025 The R Foundation for Statistical Computing 533s Platform: aarch64-unknown-linux-gnu 533s 533s R is free software and comes with ABSOLUTELY NO WARRANTY. 533s You are welcome to redistribute it under certain conditions. 533s Type 'license()' or 'licence()' for distribution details. 533s 533s R is a collaborative project with many contributors. 533s Type 'contributors()' for more information and 533s 'citation()' on how to cite R or R packages in publications. 533s 533s Type 'demo()' for some demos, 'help()' for on-line help, or 533s 'help.start()' for an HTML browser interface to help. 533s Type 'q()' to quit R. 533s 533s > options(digits = 4) 533s > set.seed(1131) 533s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 533s > library(gstat) 534s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 534s > summary(xx) 534s var1.pred var1.var observed residual 534s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 534s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 534s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 534s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 534s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 534s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 534s zscore fold x y 534s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 534s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 534s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 534s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 534s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 534s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 534s z 534s Min. :0.00164 534s 1st Qu.:0.18646 534s Median :0.44850 534s Mean :0.47142 534s 3rd Qu.:0.72403 534s Max. :0.99420 534s > 534s BEGIN TEST fit.R 534s 534s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 534s Copyright (C) 2025 The R Foundation for Statistical Computing 534s Platform: aarch64-unknown-linux-gnu 534s 534s R is free software and comes with ABSOLUTELY NO WARRANTY. 534s You are welcome to redistribute it under certain conditions. 534s Type 'license()' or 'licence()' for distribution details. 534s 534s R is a collaborative project with many contributors. 534s Type 'contributors()' for more information and 534s 'citation()' on how to cite R or R packages in publications. 534s 534s Type 'demo()' for some demos, 'help()' for on-line help, or 534s 'help.start()' for an HTML browser interface to help. 534s Type 'q()' to quit R. 534s 534s > library(sp) 534s > data(meuse) 534s > library(gstat) 535s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 535s > v$gamma=c(0.5,1,2,3,3) 535s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 535s Warning message: 535s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 535s partial sill or nugget fixed at zero value 535s model psill range 535s 1 Nug 0.000000 0.00 535s 2 Sph 7.878195 1567.77 535s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 535s model psill range 535s 1 Nug 0.000000 0.00 535s 2 Sph 7.878195 1567.77 535s > 535s BEGIN TEST krige0.R 535s 535s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 535s Copyright (C) 2025 The R Foundation for Statistical Computing 535s Platform: aarch64-unknown-linux-gnu 535s 535s R is free software and comes with ABSOLUTELY NO WARRANTY. 535s You are welcome to redistribute it under certain conditions. 535s Type 'license()' or 'licence()' for distribution details. 535s 535s R is a collaborative project with many contributors. 535s Type 'contributors()' for more information and 535s 'citation()' on how to cite R or R packages in publications. 535s 535s Type 'demo()' for some demos, 'help()' for on-line help, or 535s 'help.start()' for an HTML browser interface to help. 535s Type 'q()' to quit R. 535s 535s > # test -- load data: 535s > library(sp) 535s > data(meuse) 535s > coordinates(meuse) = ~x+y 535s > data(meuse.grid) 535s > gridded(meuse.grid) = ~x+y 535s > 535s > library(gstat) 536s > # test -- idw 536s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 536s > x <- idw(zinc~1, meuse, meuse.grid) 536s [inverse distance weighted interpolation] 536s > all.equal(x$var1.pred, meuse.grid$idw) 536s [1] TRUE 536s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 536s > v = vgm(1, "Exp", 500) 536s > # test sk: 536s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 536s > rownames(x0$pred)=NULL 536s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 536s [using simple kriging] 536s > all.equal(x$var1.pred, x0$pred[,1]) 536s [1] TRUE 536s > all.equal(x$var1.var, x0$var) 536s [1] TRUE 536s > # test ok: 536s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 537s > rownames(x0$pred)=NULL 537s > names(x0$var)=NULL 537s > x <- krige(zinc~1, meuse, meuse.grid, v) 537s [using ordinary kriging] 537s > all.equal(x$var1.pred, x0$pred[,1]) 537s [1] TRUE 537s > all.equal(x$var1.var, x0$var) 537s [1] TRUE 537s > # test uk: 537s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 537s > rownames(x0$pred)=NULL 537s > names(x0$var)=NULL 537s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 537s [using universal kriging] 537s > all.equal(x$var1.pred, x0$pred[,1]) 537s [1] TRUE 537s > all.equal(x$var1.var, x0$var) 537s [1] TRUE 537s > 537s BEGIN TEST line.R 537s 537s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 537s Copyright (C) 2025 The R Foundation for Statistical Computing 537s Platform: aarch64-unknown-linux-gnu 537s 537s R is free software and comes with ABSOLUTELY NO WARRANTY. 537s You are welcome to redistribute it under certain conditions. 537s Type 'license()' or 'licence()' for distribution details. 537s 537s R is a collaborative project with many contributors. 537s Type 'contributors()' for more information and 537s 'citation()' on how to cite R or R packages in publications. 537s 537s Type 'demo()' for some demos, 'help()' for on-line help, or 537s 'help.start()' for an HTML browser interface to help. 537s Type 'q()' to quit R. 537s 537s > options(digits=5) 537s > library(sp) 537s > data(meuse.grid) 537s > gridded(meuse.grid) = ~x+y 537s > data(meuse) 537s > coordinates(meuse) = ~x+y 537s > 537s > # choose arbitrary line over the grid: 537s > image(meuse.grid["dist"],axes=T) 537s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 537s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 537s > plot(Sl,add=T,col='green') 537s > 537s > # use the default spsample arguments of predict.gstat: 537s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 537s > plot(pts, pch=3, cex=.2, add=T) 537s > 537s > library(gstat) 538s > v = vgm(.6, "Sph", 900, .06) 538s > out1 = krige(log(zinc)~1, meuse, Sl, v) 538s [using ordinary kriging] 538s > out1 538s An object of class "SpatialLinesDataFrame" 538s Slot "data": 538s x y var1.pred var1.var 538s a 180333 332167 6.1618 0.008025 538s 538s Slot "lines": 538s [[1]] 538s An object of class "Lines" 538s Slot "Lines": 538s [[1]] 538s An object of class "Line" 538s Slot "coords": 538s [,1] [,2] 538s [1,] 180000 331000 538s [2,] 180000 332000 538s [3,] 181000 333500 538s 538s 538s 538s Slot "ID": 538s [1] "a" 538s 538s 538s 538s Slot "bbox": 538s min max 538s x 180000 181000 538s y 331000 333500 538s 538s Slot "proj4string": 538s Coordinate Reference System: 538s Deprecated Proj.4 representation: NA 538s 538s > 538s > points(180333,332167,pch=3,cex=2) 538s > 538s > # use the same line as block discretization, and predict for (0,0) 538s > # (because the block discretizing points are not centered) 538s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 538s [using ordinary kriging] 538s > out2 538s coordinates var1.pred var1.var 538s 1 (0, 0) 6.1618 0.008025 538s > 538s > compare.krigingLines = function(formula, data, newdata, model) { 538s + out1 = krige(formula, data, newdata, model) 538s + pts = spsample(newdata, n=500, 'regular', offset=.5) 538s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 538s + print("difference:") 538s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 538s + } 538s > 538s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 538s [using ordinary kriging] 538s [using ordinary kriging] 538s [1] "difference:" 538s var1.pred var1.var 538s a 0 0 538s > 538s > # one line, consisting of two line segments: 538s > pp2 = rbind(c(181000,333500),c(181000,332500)) 538s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 538s > krige(log(zinc)~1, meuse, Sl2, v) 538s [using ordinary kriging] 538s An object of class "SpatialLinesDataFrame" 538s Slot "data": 538s x y var1.pred var1.var 538s a 180667 332583 6.0424 0.0053191 538s 538s Slot "lines": 538s [[1]] 538s An object of class "Lines" 538s Slot "Lines": 538s [[1]] 538s An object of class "Line" 538s Slot "coords": 538s [,1] [,2] 538s [1,] 180000 331000 538s [2,] 180000 332000 538s [3,] 181000 333500 538s 538s 538s [[2]] 538s An object of class "Line" 538s Slot "coords": 538s [,1] [,2] 538s [1,] 181000 333500 538s [2,] 181000 332500 538s 538s 538s 538s Slot "ID": 538s [1] "a" 538s 538s 538s 538s Slot "bbox": 538s min max 538s x 180000 181000 538s y 331000 333500 538s 538s Slot "proj4string": 538s Coordinate Reference System: 538s Deprecated Proj.4 representation: NA 538s 538s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 538s [using ordinary kriging] 538s [using ordinary kriging] 538s [1] "difference:" 538s var1.pred var1.var 538s a 0 0 538s > 538s > # two seperate line segments: 538s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 538s > krige(log(zinc)~1, meuse, Sl3, v) 538s [using ordinary kriging] 538s An object of class "SpatialLinesDataFrame" 538s Slot "data": 538s x y var1.pred var1.var 538s a 180333 332167 6.1618 0.008025 538s b 181000 333000 5.7060 0.011043 538s 538s Slot "lines": 538s [[1]] 538s An object of class "Lines" 538s Slot "Lines": 538s [[1]] 538s An object of class "Line" 538s Slot "coords": 538s [,1] [,2] 538s [1,] 180000 331000 538s [2,] 180000 332000 538s [3,] 181000 333500 538s 538s 538s 538s Slot "ID": 538s [1] "a" 538s 538s 538s [[2]] 538s An object of class "Lines" 538s Slot "Lines": 538s [[1]] 538s An object of class "Line" 538s Slot "coords": 538s [,1] [,2] 538s [1,] 181000 333500 538s [2,] 181000 332500 538s 538s 538s 538s Slot "ID": 538s [1] "b" 538s 538s 538s 538s Slot "bbox": 538s min max 538s x 180000 181000 538s y 331000 333500 538s 538s Slot "proj4string": 538s Coordinate Reference System: 538s Deprecated Proj.4 representation: NA 538s 538s > 538s BEGIN TEST merge.R 538s 538s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 538s Copyright (C) 2025 The R Foundation for Statistical Computing 538s Platform: aarch64-unknown-linux-gnu 538s 538s R is free software and comes with ABSOLUTELY NO WARRANTY. 538s You are welcome to redistribute it under certain conditions. 538s Type 'license()' or 'licence()' for distribution details. 538s 538s R is a collaborative project with many contributors. 538s Type 'contributors()' for more information and 538s 'citation()' on how to cite R or R packages in publications. 538s 538s Type 'demo()' for some demos, 'help()' for on-line help, or 538s 'help.start()' for an HTML browser interface to help. 538s Type 'q()' to quit R. 538s 538s > options(digits=6) 538s > # illustrates the use of merge, for merging parameters accross variables: 538s > # Z1=m+e1(s) 538s > # Z2=m+e2(s) 538s > # Z1 and Z2 each have a different variogram, but share the parameter m 538s > # see documentation of gstat() function 538s > library(gstat) 539s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 539s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 539s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 539s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 539s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 539s > predict(g, data.frame(x=1,y=1), debug = 32) 539s Intrinsic Correlation found. Good. 539s [using ordinary cokriging] 539s we're at location X: 1 Y: 1 Z: 0 539s zero block size 539s we're at point X: 1 Y: 1 Z: 0 539s 539s # X: 539s #Matrix: 4 by 1 539s rbind( 539s c( 1.000000), # row 1 539s c( 1.000000), # row 2 539s c( 1.000000), # row 3 539s c( 1.000000) # row 4 539s ) 539s [using generalized covariances: max_val - semivariance()] 539s # Covariances (x_i, x_j) matrix C (upper triangle): 539s #Matrix: 4 by 4 539s rbind( 539s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 539s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 539s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 539s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 539s ) 539s 539s # glm->C, Choleski decomposed:: 539s #Matrix: 4 by 4 539s rbind( 539s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 539s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 539s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 539s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 539s ) 539s 539s # X'C-1 X: 539s #Matrix: 1 by 1 539s rbind( 539s c( 3.245289) # row 1 539s ) 539s 539s # beta: 539s #Vector: dim: 1 539s c( 2.500000) 539s # Cov(beta), (X'C-1 X)-1: 539s #Matrix: 1 by 1 539s rbind( 539s c( 0.308139) # row 1 539s ) 539s 539s # Corr(beta): 539s #Matrix: 1 by 1 539s rbind( 539s c( 1.000000) # row 1 539s ) 539s 539s # X0 (X values at prediction location x0): 539s #Matrix: 1 by 2 539s rbind( 539s c( 1.000000, 1.000000) # row 1 539s ) 539s 539s # BLUE(mu), E(y(x0)) = X0'beta: 539s #Vector: dim: 2 539s c( 2.500000, 2.500000) 539s # Covariances (x_i, x_0), C0: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.243117, 0.121558), # row 1 539s c( 0.243117, 0.121558), # row 2 539s c( 0.121558, 0.243117), # row 3 539s c( 0.121558, 0.243117) # row 4 539s ) 539s 539s # C-1 C0: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.206482, 0.089387), # row 1 539s c( 0.206482, 0.089387), # row 2 539s c( 0.089387, 0.206482), # row 3 539s c( 0.089387, 0.206482) # row 4 539s ) 539s 539s # [a] Cov_ij(B,B) or Cov_ij(0,0): 539s #Matrix: 2 by 2 539s rbind( 539s c( 1.000000, 0.500000), # row 1 539s c( 0.500000, 1.000000) # row 2 539s ) 539s 539s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 539s #Matrix: 2 by 2 539s rbind( 539s c( 0.051360, 0.051360), # row 1 539s c( 0.051360, 0.051360) # row 2 539s ) 539s 539s # [b] c0'C-1 c0: 539s #Matrix: 2 by 2 539s rbind( 539s c( 0.122130, 0.093662), # row 1 539s c( 0.093662, 0.122130) # row 2 539s ) 539s 539s # Best Linear Unbiased Predictor: 539s #Vector: dim: 2 539s c( 2.031619, 2.968381) 539s # MSPE ([a]-[b]+[c]): 539s #Matrix: 2 by 2 539s rbind( 539s c( 0.929230, 0.457698), # row 1 539s c( 0.457698, 0.929230) # row 2 539s ) 539s 539s # kriging weights: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.308548, 0.191452), # row 1 539s c( 0.308548, 0.191452), # row 2 539s c( 0.191452, 0.308548), # row 3 539s c( 0.191452, 0.308548) # row 4 539s ) 539s 539s 539s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 539s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 539s > 539s > # Z1 and Z2 share a regression slope: 539s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 539s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 539s + merge=list(c("d1",2,"d2",2))) 539s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 539s > predict(g, data.frame(x=1,y=1), debug = 32) 539s Intrinsic Correlation found. Good. 539s [using universal cokriging] 539s we're at location X: 1 Y: 1 Z: 0 539s zero block size 539s we're at point X: 1 Y: 1 Z: 0 539s 539s # X: 539s #Matrix: 4 by 3 539s rbind( 539s c( 1.000000, 0.000000, 0.000000), # row 1 539s c( 1.000000, 2.000000, 0.000000), # row 2 539s c( 0.000000, 0.000000, 1.000000), # row 3 539s c( 0.000000, 2.000000, 1.000000) # row 4 539s ) 539s [using generalized covariances: max_val - semivariance()] 539s # Covariances (x_i, x_j) matrix C (upper triangle): 539s #Matrix: 4 by 4 539s rbind( 539s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 539s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 539s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 539s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 539s ) 539s 539s # glm->C, Choleski decomposed:: 539s #Matrix: 4 by 4 539s rbind( 539s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 539s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 539s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 539s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 539s ) 539s 539s # X'C-1 X: 539s #Matrix: 3 by 3 539s rbind( 539s c( 1.774607, 1.622645, -0.151962), # row 1 539s c( 1.622645, 7.676050, 1.622645), # row 2 539s c(-0.151962, 1.622645, 1.774607) # row 3 539s ) 539s 539s # beta: 539s #Vector: dim: 3 539s c( 0.000000, 0.500000, 4.000000) 539s # Cov(beta), (X'C-1 X)-1: 539s #Matrix: 3 by 3 539s rbind( 539s c( 0.793363, -0.225695, 0.274305), # row 1 539s c(-0.225695, 0.225695, -0.225695), # row 2 539s c( 0.274305, -0.225695, 0.793363) # row 3 539s ) 539s 539s # Corr(beta): 539s #Matrix: 3 by 3 539s rbind( 539s c( 1.000000, -0.533366, 0.345750), # row 1 539s c(-0.533366, 1.000000, -0.533366), # row 2 539s c( 0.345750, -0.533366, 1.000000) # row 3 539s ) 539s 539s # X0 (X values at prediction location x0): 539s #Matrix: 3 by 2 539s rbind( 539s c( 1.000000, 0.000000), # row 1 539s c( 1.000000, 1.000000), # row 2 539s c( 0.000000, 1.000000) # row 3 539s ) 539s 539s # BLUE(mu), E(y(x0)) = X0'beta: 539s #Vector: dim: 2 539s c( 0.500000, 4.500000) 539s # Covariances (x_i, x_0), C0: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.243117, 0.121558), # row 1 539s c( 0.243117, 0.121558), # row 2 539s c( 0.121558, 0.243117), # row 3 539s c( 0.121558, 0.243117) # row 4 539s ) 539s 539s # C-1 C0: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.206482, 0.089387), # row 1 539s c( 0.206482, 0.089387), # row 2 539s c( 0.089387, 0.206482), # row 3 539s c( 0.089387, 0.206482) # row 4 539s ) 539s 539s # [a] Cov_ij(B,B) or Cov_ij(0,0): 539s #Matrix: 2 by 2 539s rbind( 539s c( 1.000000, 0.500000), # row 1 539s c( 0.500000, 1.000000) # row 2 539s ) 539s 539s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 539s #Matrix: 2 by 2 539s rbind( 539s c( 0.203564, -0.100844), # row 1 539s c(-0.100844, 0.203564) # row 2 539s ) 539s 539s # [b] c0'C-1 c0: 539s #Matrix: 2 by 2 539s rbind( 539s c( 0.122130, 0.093662), # row 1 539s c( 0.093662, 0.122130) # row 2 539s ) 539s 539s # Best Linear Unbiased Predictor: 539s #Vector: dim: 2 539s c( 0.500000, 4.500000) 539s # MSPE ([a]-[b]+[c]): 539s #Matrix: 2 by 2 539s rbind( 539s c( 1.081434, 0.305494), # row 1 539s c( 0.305494, 1.081434) # row 2 539s ) 539s 539s # kriging weights: 539s #Matrix: 4 by 2 539s rbind( 539s c( 0.500000, 0.000000), # row 1 539s c( 0.500000, 0.000000), # row 2 539s c( 0.000000, 0.500000), # row 3 539s c( 0.000000, 0.500000) # row 4 539s ) 539s 539s 539s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 539s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 539s > 539s BEGIN TEST na.action.R 539s 539s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 539s Copyright (C) 2025 The R Foundation for Statistical Computing 539s Platform: aarch64-unknown-linux-gnu 539s 539s R is free software and comes with ABSOLUTELY NO WARRANTY. 539s You are welcome to redistribute it under certain conditions. 539s Type 'license()' or 'licence()' for distribution details. 539s 539s R is a collaborative project with many contributors. 539s Type 'contributors()' for more information and 539s 'citation()' on how to cite R or R packages in publications. 539s 539s Type 'demo()' for some demos, 'help()' for on-line help, or 539s 'help.start()' for an HTML browser interface to help. 539s Type 'q()' to quit R. 539s 539s > library(sp) 539s > 539s > data(meuse) 539s > data(meuse.grid) 539s > 539s > set.seed(13131) # reproduce results 539s > 539s > # select 10 random rows; 539s > # create two missing values in the coordinates: 539s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 539s > m[c(2,8), "x"] = NA 539s > 539s > library(gstat) 540s > ## this is not allowed anymore: 540s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 540s > Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 540s missing values in object 540s try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 540s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 540s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 540s missing values in object 540s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 540s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 540s missing values in object 540s > 540s > # select 10 random rows; 540s > # create two missing values in the regressor variable: 540s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 540s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 540s missing values in object 540s > m[c(3,7), "dist"] = NA 540s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 540s [ordinary or weighted least squares prediction] 540s x y var1.pred var1.var 540s 1 178860 330860 6.530134 0.2415196 540s 2 180260 331860 5.389567 0.2406041 540s 3 180100 331860 NA NA 540s 4 180460 331820 5.213370 0.2417197 540s 5 179660 330580 5.550859 0.2398778 540s 6 179740 330300 6.108648 0.2395392 540s 7 180220 330660 NA NA 540s 8 178580 329820 6.533801 0.2415453 540s 9 180100 331900 5.580264 0.2397758 540s 10 180780 331900 5.095967 0.2426499 540s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 540s [ordinary or weighted least squares prediction] 540s x y var1.pred var1.var 540s 1877 178860 330860 6.530134 0.2415196 540s 1015 180260 331860 5.389567 0.2406041 540s 1056 180460 331820 5.213370 0.2417197 540s 2199 179660 330580 5.550859 0.2398778 540s 2556 179740 330300 6.108648 0.2395392 540s 2985 178580 329820 6.533801 0.2415453 540s 975 180100 331900 5.580264 0.2397758 540s 992 180780 331900 5.095967 0.2426499 540s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 540s [ordinary or weighted least squares prediction] 540s x y var1.pred var1.var 540s 1877 178860 330860 6.530134 0.2415196 540s 1015 180260 331860 5.389567 0.2406041 540s 1056 180460 331820 5.213370 0.2417197 540s 2199 179660 330580 5.550859 0.2398778 540s 2556 179740 330300 6.108648 0.2395392 540s 2985 178580 329820 6.533801 0.2415453 540s 975 180100 331900 5.580264 0.2397758 540s 992 180780 331900 5.095967 0.2426499 540s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 540s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 540s missing values in object 540s > 540s BEGIN TEST rings.R 540s 540s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 540s Copyright (C) 2025 The R Foundation for Statistical Computing 540s Platform: aarch64-unknown-linux-gnu 540s 540s R is free software and comes with ABSOLUTELY NO WARRANTY. 540s You are welcome to redistribute it under certain conditions. 540s Type 'license()' or 'licence()' for distribution details. 540s 540s R is a collaborative project with many contributors. 540s Type 'contributors()' for more information and 540s 'citation()' on how to cite R or R packages in publications. 540s 540s Type 'demo()' for some demos, 'help()' for on-line help, or 540s 'help.start()' for an HTML browser interface to help. 540s Type 'q()' to quit R. 540s 540s > library(sp) 540s > library(gstat) 541s > set.seed(13331) 541s > 541s > x = runif(10) 541s > y = runif(10) 541s > z = rnorm(10) 541s > d = data.frame(x=x,y=y,z=z) 541s > bl = c(1,1) 541s > 541s > nd = data.frame(x=.5, y=.5) 541s > 541s > # single block: 541s > library(sp) 541s > coordinates(d) = ~x+y 541s > nd = SpatialPoints(nd) 541s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 541s + set = list(nb=4)) 541s [using ordinary kriging] 541s > 541s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 541s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 541s > a = data.frame(a = 1, b = 2) 541s > rownames(a) = "xx" 541s > r1df = SpatialPolygonsDataFrame(r1, a) 541s > 541s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 541s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 541s > yy = predict(g, r1df, block = bl, sps.args = args) 541s [using ordinary kriging] 541s > 541s > xx = as.data.frame(xx) 541s > yy = as.data.frame(yy) 541s > row.names(xx) = row.names(yy) 541s > print(all.equal(xx,yy)) 541s [1] TRUE 541s > 541s > ## multiple blocks of equal size: 541s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 541s > nd = SpatialPoints(nd) 541s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 541s + set = list(nb=4)) 541s [using ordinary kriging] 541s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 541s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 541s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 541s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 541s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 541s > r1 = SpatialPolygons(list( 541s + Polygons(list(Polygon(ring0)), ID = "x0"), 541s + Polygons(list(Polygon(ring1)), ID = "x1"), 541s + Polygons(list(Polygon(ring2)), ID = "x2"), 541s + Polygons(list(Polygon(ring3)), ID = "x3"), 541s + Polygons(list(Polygon(ring4)), ID = "x4") 541s + )) 541s > df = data.frame(a=rep(1,5), b= rep(1,5)) 541s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 541s > r1df = SpatialPolygonsDataFrame(r1, df) 541s > 541s > yy = predict(g, r1, block = bl, sps.args = args) 541s [using ordinary kriging] 541s > xx = as.data.frame(xx) 541s > yy = as.data.frame(yy) 541s > row.names(xx) = row.names(yy) 541s > all.equal(xx, yy) 541s [1] TRUE 541s > 541s > ## multiple blocks of equal size: 541s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 541s > yy = predict(g, r1, block = bl, sps.args = args) 541s [using ordinary kriging] 541s > xx = as.data.frame(xx) 541s > yy = as.data.frame(yy) 541s > row.names(xx) = row.names(yy) 541s > print(all.equal(xx, yy)) 541s [1] TRUE 541s > 541s > ## multiple blocks of varying size: 541s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 541s > nd = SpatialPoints(nd) 541s > bl = c(1,1) 541s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 541s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 541s + set = list(nb=4)) 541s [using ordinary kriging] 541s > bl = c(2,2) 541s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 541s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 541s + set = list(nb=4)) 541s [using ordinary kriging] 541s > bl = c(3,3) 541s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 541s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 541s + set = list(nb=4)) 541s [using ordinary kriging] 541s > r1 = SpatialPolygons(list( 541s + Polygons(list(Polygon(ring0)), ID = "x0"), 541s + Polygons(list(Polygon(ring1)), ID = "x1"), 541s + Polygons(list(Polygon(ring2)), ID = "x2") 541s + )) 541s > df = data.frame(a = rep(1,3), b = rep(1,3)) 541s > rownames(df) = c("x0", "x1", "x2") 541s > r1df = SpatialPolygonsDataFrame(r1, df) 541s > 541s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 541s > yy = predict(g, r1df, block = bl, sps.args = args) 541s [using ordinary kriging] 541s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 541s > row.names(xx) = 1:3 541s > xx = as.data.frame(xx) 541s > yy = as.data.frame(yy) 541s > row.names(xx) = row.names(yy) 541s > print(all.equal(xx, yy)) 541s [1] TRUE 541s > 541s BEGIN TEST sim.R 541s 541s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 541s Copyright (C) 2025 The R Foundation for Statistical Computing 541s Platform: aarch64-unknown-linux-gnu 541s 541s R is free software and comes with ABSOLUTELY NO WARRANTY. 541s You are welcome to redistribute it under certain conditions. 541s Type 'license()' or 'licence()' for distribution details. 541s 541s R is a collaborative project with many contributors. 541s Type 'contributors()' for more information and 541s 'citation()' on how to cite R or R packages in publications. 541s 541s Type 'demo()' for some demos, 'help()' for on-line help, or 541s 'help.start()' for an HTML browser interface to help. 541s Type 'q()' to quit R. 541s 541s > options(digits=6) 541s > library(sp) 541s > data(meuse) 541s > set.seed(158229572) 541s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 541s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 541s > library(gstat) 542s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 542s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 542s + block = c(40,40), nmax = 40, nsim = 10) 542s drawing 10 GLS realisations of beta... 542s [using conditional Gaussian simulation] 542s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 542s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 542s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 542s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 542s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 542s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 542s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 542s sim8 sim9 sim10 542s 1 294.107 113.347 279.991 542s 2 776.498 724.160 901.692 542s 3 338.021 630.244 140.272 542s 4 127.301 957.242 444.007 542s 5 533.773 748.144 623.960 542s 6 1084.170 537.604 -214.972 542s > 542s BEGIN TEST stars.R 542s 542s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 542s Copyright (C) 2025 The R Foundation for Statistical Computing 542s Platform: aarch64-unknown-linux-gnu 542s 542s R is free software and comes with ABSOLUTELY NO WARRANTY. 542s You are welcome to redistribute it under certain conditions. 542s Type 'license()' or 'licence()' for distribution details. 542s 542s R is a collaborative project with many contributors. 542s Type 'contributors()' for more information and 542s 'citation()' on how to cite R or R packages in publications. 542s 542s Type 'demo()' for some demos, 'help()' for on-line help, or 542s 'help.start()' for an HTML browser interface to help. 542s Type 'q()' to quit R. 542s 542s > Sys.setenv(TZ = "UTC") 542s > 542s > # 0. using sp: 542s > 542s > suppressPackageStartupMessages(library(sp)) 542s > demo(meuse, ask = FALSE) 542s 542s 542s demo(meuse) 542s ---- ~~~~~ 542s 542s > require(sp) 542s 542s > crs = CRS("EPSG:28992") 543s 543s > data("meuse") 543s 543s > coordinates(meuse) <- ~x+y 543s 543s > proj4string(meuse) <- crs 543s 543s > data("meuse.grid") 543s 543s > coordinates(meuse.grid) <- ~x+y 543s 543s > gridded(meuse.grid) <- TRUE 543s 543s > proj4string(meuse.grid) <- crs 543s 543s > data("meuse.riv") 543s 543s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 543s 543s > proj4string(meuse.riv) <- crs 543s 543s > data("meuse.area") 543s 543s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 543s 543s > proj4string(meuse.area) <- crs 543s > suppressPackageStartupMessages(library(gstat)) 543s > v = variogram(log(zinc)~1, meuse) 543s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 543s model psill range 543s 1 Nug 0.05066243 0.0000 543s 2 Sph 0.59060780 897.0209 543s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 543s [using ordinary kriging] 543s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 544s [using ordinary kriging] 544s > 544s > # 1. using sf: 544s > suppressPackageStartupMessages(library(sf)) 544s > demo(meuse_sf, ask = FALSE, echo = FALSE) 544s > # reloads meuse as data.frame, so 544s > demo(meuse, ask = FALSE) 544s 544s 544s demo(meuse) 544s ---- ~~~~~ 544s 544s > require(sp) 544s 544s > crs = CRS("EPSG:28992") 544s 544s > data("meuse") 544s 544s > coordinates(meuse) <- ~x+y 544s 544s > proj4string(meuse) <- crs 544s 544s > data("meuse.grid") 544s 544s > coordinates(meuse.grid) <- ~x+y 544s 544s > gridded(meuse.grid) <- TRUE 544s 544s > proj4string(meuse.grid) <- crs 544s 544s > data("meuse.riv") 544s 544s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 544s 544s > proj4string(meuse.riv) <- crs 544s 544s > data("meuse.area") 544s 544s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 544s 544s > proj4string(meuse.area) <- crs 544s > 544s > v = variogram(log(zinc)~1, meuse_sf) 544s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 544s model psill range 544s 1 Nug 0.05066243 0.0000 544s 2 Sph 0.59060780 897.0209 544s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 544s [using ordinary kriging] 544s > 544s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 544s [1] TRUE 544s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 544s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 544s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 544s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 544s > 544s > # 2. using stars for grid: 544s > 544s > suppressPackageStartupMessages(library(stars)) 544s > st = st_as_stars(meuse.grid) 544s > st_crs(st) 544s Coordinate Reference System: 544s User input: Amersfoort / RD New 544s wkt: 544s PROJCRS["Amersfoort / RD New", 544s BASEGEOGCRS["Amersfoort", 544s DATUM["Amersfoort", 544s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 544s LENGTHUNIT["metre",1]]], 544s PRIMEM["Greenwich",0, 544s ANGLEUNIT["degree",0.0174532925199433]], 544s ID["EPSG",4289]], 544s CONVERSION["RD New", 544s METHOD["Oblique Stereographic", 544s ID["EPSG",9809]], 544s PARAMETER["Latitude of natural origin",52.1561605555556, 544s ANGLEUNIT["degree",0.0174532925199433], 544s ID["EPSG",8801]], 544s PARAMETER["Longitude of natural origin",5.38763888888889, 544s ANGLEUNIT["degree",0.0174532925199433], 544s ID["EPSG",8802]], 544s PARAMETER["Scale factor at natural origin",0.9999079, 544s SCALEUNIT["unity",1], 544s ID["EPSG",8805]], 544s PARAMETER["False easting",155000, 544s LENGTHUNIT["metre",1], 544s ID["EPSG",8806]], 544s PARAMETER["False northing",463000, 544s LENGTHUNIT["metre",1], 544s ID["EPSG",8807]]], 544s CS[Cartesian,2], 544s AXIS["easting (X)",east, 544s ORDER[1], 544s LENGTHUNIT["metre",1]], 544s AXIS["northing (Y)",north, 544s ORDER[2], 544s LENGTHUNIT["metre",1]], 544s USAGE[ 544s SCOPE["Engineering survey, topographic mapping."], 544s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 544s BBOX[50.75,3.2,53.7,7.22]], 544s ID["EPSG",28992]] 544s > 544s > # compare inputs: 544s > sp = as(st, "Spatial") 544s > fullgrid(meuse.grid) = TRUE 544s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 544s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 544s [2] "Names: 1 string mismatch" 544s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 544s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 544s [2] "Names: 1 string mismatch" 544s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 544s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 544s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 544s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 544s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 544s > 544s > # kriging: 544s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 544s > k_st = if (Sys.getenv("USER") == "travis") { 544s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 544s + } else { 544s + krige(log(zinc)~1, meuse_sf, st, v.fit) 544s + } 544s [using ordinary kriging] 544s > k_st 544s stars object with 2 dimensions and 2 attributes 544s attribute(s): 544s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 544s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 544s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 544s dimension(s): 544s from to offset delta x/y 544s x 1 78 178440 40 [x] 544s y 1 104 333760 -40 [y] 544s > 544s > # handle factors, when going to stars? 544s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 544s > st_as_stars(k_sp_grd) 544s stars object with 2 dimensions and 3 attributes 544s attribute(s): 544s var1.pred var1.var cls 544s Min. :4.777 Min. :0.0855 (0,5]: 316 544s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 544s Median :5.573 Median :0.1622 (6,7]: 962 544s Mean :5.707 Mean :0.1853 (7,8]: 47 544s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 544s Max. :7.440 Max. :0.5003 NA's :5009 544s NA's :5009 NA's :5009 544s dimension(s): 544s from to offset delta refsys x/y 544s x 1 78 178440 40 Amersfoort / RD New [x] 544s y 1 104 333760 -40 Amersfoort / RD New [y] 544s > if (require(raster, quietly = TRUE)) { 544s + print(st_as_stars(raster::stack(k_sp_grd))) # check 544s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 544s + } 550s stars object with 3 dimensions and 1 attribute 550s attribute(s): 550s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 550s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 550s dimension(s): 550s from to offset delta refsys values 550s x 1 78 178440 40 Amersfoort / RD New NULL 550s y 1 104 333760 -40 Amersfoort / RD New NULL 550s band 1 3 NA NA NA var1.pred, var1.var , cls 550s x/y 550s x [x] 550s y [y] 550s band 551s [1] TRUE 551s > 551s > suppressPackageStartupMessages(library(spacetime)) 551s > 551s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 551s > n = 4 551s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 551s + stars:::create_dimensions(list( 551s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 551s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 551s + time = stars:::create_dimension(values = tm + 1:n)), 551s + raster = stars:::get_raster(dimensions = c("x", "y"))) 551s + ) 551s > s 551s stars object with 3 dimensions and 1 attribute 551s attribute(s): 551s Min. 1st Qu. Median Mean 3rd Qu. Max. 551s foo 1 16.75 32.5 32.5 48.25 64 551s dimension(s): 551s from to offset delta refsys x/y 551s x 1 4 10 0.5 NA [x] 551s y 1 4 0 -0.7 NA [y] 551s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 551s > 551s > as.data.frame(s) 551s x y time foo 551s 1 10.25 -0.35 2019-02-25 15:37:25 1 551s 2 10.75 -0.35 2019-02-25 15:37:25 2 551s 3 11.25 -0.35 2019-02-25 15:37:25 3 551s 4 11.75 -0.35 2019-02-25 15:37:25 4 551s 5 10.25 -1.05 2019-02-25 15:37:25 5 551s 6 10.75 -1.05 2019-02-25 15:37:25 6 551s 7 11.25 -1.05 2019-02-25 15:37:25 7 551s 8 11.75 -1.05 2019-02-25 15:37:25 8 551s 9 10.25 -1.75 2019-02-25 15:37:25 9 551s 10 10.75 -1.75 2019-02-25 15:37:25 10 551s 11 11.25 -1.75 2019-02-25 15:37:25 11 551s 12 11.75 -1.75 2019-02-25 15:37:25 12 551s 13 10.25 -2.45 2019-02-25 15:37:25 13 551s 14 10.75 -2.45 2019-02-25 15:37:25 14 551s 15 11.25 -2.45 2019-02-25 15:37:25 15 551s 16 11.75 -2.45 2019-02-25 15:37:25 16 551s 17 10.25 -0.35 2019-02-25 15:37:26 17 551s 18 10.75 -0.35 2019-02-25 15:37:26 18 551s 19 11.25 -0.35 2019-02-25 15:37:26 19 551s 20 11.75 -0.35 2019-02-25 15:37:26 20 551s 21 10.25 -1.05 2019-02-25 15:37:26 21 551s 22 10.75 -1.05 2019-02-25 15:37:26 22 551s 23 11.25 -1.05 2019-02-25 15:37:26 23 551s 24 11.75 -1.05 2019-02-25 15:37:26 24 551s 25 10.25 -1.75 2019-02-25 15:37:26 25 551s 26 10.75 -1.75 2019-02-25 15:37:26 26 551s 27 11.25 -1.75 2019-02-25 15:37:26 27 551s 28 11.75 -1.75 2019-02-25 15:37:26 28 551s 29 10.25 -2.45 2019-02-25 15:37:26 29 551s 30 10.75 -2.45 2019-02-25 15:37:26 30 551s 31 11.25 -2.45 2019-02-25 15:37:26 31 551s 32 11.75 -2.45 2019-02-25 15:37:26 32 551s 33 10.25 -0.35 2019-02-25 15:37:27 33 551s 34 10.75 -0.35 2019-02-25 15:37:27 34 551s 35 11.25 -0.35 2019-02-25 15:37:27 35 551s 36 11.75 -0.35 2019-02-25 15:37:27 36 551s 37 10.25 -1.05 2019-02-25 15:37:27 37 551s 38 10.75 -1.05 2019-02-25 15:37:27 38 551s 39 11.25 -1.05 2019-02-25 15:37:27 39 551s 40 11.75 -1.05 2019-02-25 15:37:27 40 551s 41 10.25 -1.75 2019-02-25 15:37:27 41 551s 42 10.75 -1.75 2019-02-25 15:37:27 42 551s 43 11.25 -1.75 2019-02-25 15:37:27 43 551s 44 11.75 -1.75 2019-02-25 15:37:27 44 551s 45 10.25 -2.45 2019-02-25 15:37:27 45 551s 46 10.75 -2.45 2019-02-25 15:37:27 46 551s 47 11.25 -2.45 2019-02-25 15:37:27 47 551s 48 11.75 -2.45 2019-02-25 15:37:27 48 551s 49 10.25 -0.35 2019-02-25 15:37:28 49 551s 50 10.75 -0.35 2019-02-25 15:37:28 50 551s 51 11.25 -0.35 2019-02-25 15:37:28 51 551s 52 11.75 -0.35 2019-02-25 15:37:28 52 551s 53 10.25 -1.05 2019-02-25 15:37:28 53 551s 54 10.75 -1.05 2019-02-25 15:37:28 54 551s 55 11.25 -1.05 2019-02-25 15:37:28 55 551s 56 11.75 -1.05 2019-02-25 15:37:28 56 551s 57 10.25 -1.75 2019-02-25 15:37:28 57 551s 58 10.75 -1.75 2019-02-25 15:37:28 58 551s 59 11.25 -1.75 2019-02-25 15:37:28 59 551s 60 11.75 -1.75 2019-02-25 15:37:28 60 551s 61 10.25 -2.45 2019-02-25 15:37:28 61 551s 62 10.75 -2.45 2019-02-25 15:37:28 62 551s 63 11.25 -2.45 2019-02-25 15:37:28 63 551s 64 11.75 -2.45 2019-02-25 15:37:28 64 551s > plot(s, col = sf.colors(), axes = TRUE) 551s > (s.stfdf = as(s, "STFDF")) 551s An object of class "STFDF" 551s Slot "data": 551s foo 551s 1 1 551s 2 2 551s 3 3 551s 4 4 551s 5 5 551s 6 6 551s 7 7 551s 8 8 551s 9 9 551s 10 10 551s 11 11 551s 12 12 551s 13 13 551s 14 14 551s 15 15 551s 16 16 551s 17 17 551s 18 18 551s 19 19 551s 20 20 551s 21 21 551s 22 22 551s 23 23 551s 24 24 551s 25 25 551s 26 26 551s 27 27 551s 28 28 551s 29 29 551s 30 30 551s 31 31 551s 32 32 551s 33 33 551s 34 34 551s 35 35 551s 36 36 551s 37 37 551s 38 38 551s 39 39 551s 40 40 551s 41 41 551s 42 42 551s 43 43 551s 44 44 551s 45 45 551s 46 46 551s 47 47 551s 48 48 551s 49 49 551s 50 50 551s 51 51 551s 52 52 551s 53 53 551s 54 54 551s 55 55 551s 56 56 551s 57 57 551s 58 58 551s 59 59 551s 60 60 551s 61 61 551s 62 62 551s 63 63 551s 64 64 551s 551s Slot "sp": 551s Object of class SpatialPixels 551s Grid topology: 551s cellcentre.offset cellsize cells.dim 551s x 10.25 0.5 4 551s y -2.45 0.7 4 551s SpatialPoints: 551s x y 551s [1,] 10.25 -0.35 551s [2,] 10.75 -0.35 551s [3,] 11.25 -0.35 551s [4,] 11.75 -0.35 551s [5,] 10.25 -1.05 551s [6,] 10.75 -1.05 551s [7,] 11.25 -1.05 551s [8,] 11.75 -1.05 551s [9,] 10.25 -1.75 551s [10,] 10.75 -1.75 551s [11,] 11.25 -1.75 551s [12,] 11.75 -1.75 551s [13,] 10.25 -2.45 551s [14,] 10.75 -2.45 551s [15,] 11.25 -2.45 551s [16,] 11.75 -2.45 551s Coordinate Reference System (CRS) arguments: NA 551s 551s Slot "time": 551s timeIndex 551s 2019-02-25 15:37:25 1 551s 2019-02-25 15:37:26 2 551s 2019-02-25 15:37:27 3 551s 2019-02-25 15:37:28 4 551s 551s Slot "endTime": 551s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 551s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 551s 551s > stplot(s.stfdf, scales = list(draw = TRUE)) 551s > 551s > (s2 = st_as_stars(s.stfdf)) 551s stars object with 3 dimensions and 1 attribute 551s attribute(s): 551s Min. 1st Qu. Median Mean 3rd Qu. Max. 551s foo 1 16.75 32.5 32.5 48.25 64 551s dimension(s): 551s from to offset delta refsys x/y 551s x 1 4 10 0.5 NA [x] 551s y 1 4 -1.11e-16 -0.7 NA [y] 551s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 551s > plot(s2, col = sf.colors(), axes = TRUE) 551s > all.equal(s, s2, check.attributes = FALSE) 551s [1] TRUE 551s > 551s > # multiple simulations: 551s > data(meuse, package = "sp") 551s > data(meuse.grid, package = "sp") 551s > coordinates(meuse.grid) <- ~x+y 551s > gridded(meuse.grid) <- TRUE 551s > meuse.grid = st_as_stars(meuse.grid) 551s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 551s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 551s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 551s > set.seed(123) 551s > ## IGNORE_RDIFF_BEGIN 551s > (p = predict(g, meuse.grid, nsim = 5)) 551s drawing 5 multivariate GLS realisations of beta... 551s [using conditional Gaussian simulation] 551s stars object with 3 dimensions and 2 attributes 551s attribute(s): 551s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 551s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 551s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 551s dimension(s): 551s from to offset delta values x/y 551s x 1 78 178440 40 NULL [x] 551s y 1 104 333760 -40 NULL [y] 551s sample 1 5 NA NA sim1,...,sim5 551s > ## IGNORE_RDIFF_END 551s > 551s BEGIN TEST unproj.R 551s 551s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 551s Copyright (C) 2025 The R Foundation for Statistical Computing 551s Platform: aarch64-unknown-linux-gnu 551s 551s R is free software and comes with ABSOLUTELY NO WARRANTY. 551s You are welcome to redistribute it under certain conditions. 551s Type 'license()' or 'licence()' for distribution details. 551s 551s R is a collaborative project with many contributors. 551s Type 'contributors()' for more information and 551s 'citation()' on how to cite R or R packages in publications. 551s 551s Type 'demo()' for some demos, 'help()' for on-line help, or 551s 'help.start()' for an HTML browser interface to help. 551s Type 'q()' to quit R. 551s 551s > # DOI 10.1007/s11004-011-9344-7 551s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 551s > 551s > suppressPackageStartupMessages(library(sp)) 552s > library(gstat) 552s > 552s > if (require(sp, quietly = TRUE) && 552s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 552s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 552s + data(meuse) 552s + coordinates(meuse) = ~x+y 552s + proj4string(meuse) = CRS("+init=epsg:28992") 552s + ll = "+proj=longlat +ellps=WGS84" 552s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 552s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 552s + meuse.ll[1:10,] 552s + variogram(log(zinc)~1, meuse.ll) 552s + 552s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 552s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 552s + 552s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 552s + abline(0,1) 552s + 552s + data(ozone2) 552s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 552s + data.frame(t(ozone2$y)), 552s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 552s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 552s + utm16 = "+proj=utm +zone=16" 552s + # oz.utm = spTransform(oz, utm16) 552s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 552s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 552s + 552s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 552s + 552s + foo <- 552s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 552s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 552s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 552s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 552s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 552s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 552s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 552s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 552s + -11L), class = "data.frame") 552s + 552s + coordinates(foo) <- ~lon+lat 552s + 552s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 552s + 552s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 552s + 552s + cat('==========\nvariogram:\n') 552s + print(head(vg.foo)) 552s + 552s + cat('==========\nspDistsN1 Distances:\n') 552s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 552s + } 553s ========== 553s variogram: 553s dist gamma dir.hor dir.ver id left right 553s 1 3115.1190 8.971063e-04 0 0 var1 2 1 553s 2 1908.0468 1.909846e+01 0 0 var1 3 1 553s 3 1405.6211 1.883757e+01 0 0 var1 3 2 553s 4 1837.5667 1.347749e+01 0 0 var1 4 1Warning message: 553s In CPL_crs_from_input(x) : 553s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 553s 553s 5 1522.8765 1.325847e+01 0 0 var1 4 2 553s 6 119.9386 4.886139e-01 0 0 var1 4 3 553s ========== 553s spDistsN1 Distances: 553s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 553s [8] 3081.7541 4090.4022 665.9348 2683.1516 553s > 554s BEGIN TEST variogram.R 554s 554s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 554s Copyright (C) 2025 The R Foundation for Statistical Computing 554s Platform: aarch64-unknown-linux-gnu 554s 554s R is free software and comes with ABSOLUTELY NO WARRANTY. 554s You are welcome to redistribute it under certain conditions. 554s Type 'license()' or 'licence()' for distribution details. 554s 554s R is a collaborative project with many contributors. 554s Type 'contributors()' for more information and 554s 'citation()' on how to cite R or R packages in publications. 554s 554s Type 'demo()' for some demos, 'help()' for on-line help, or 554s 'help.start()' for an HTML browser interface to help. 554s Type 'q()' to quit R. 554s 554s > library(sp) 554s > library(gstat) 554s > data(meuse) 554s > variogram(log(zinc)~1, ~x+y, meuse) 554s np dist gamma dir.hor dir.ver id 554s 1 57 79.29244 0.1234479 0 0 var1 554s 2 299 163.97367 0.2162185 0 0 var1 554s 3 419 267.36483 0.3027859 0 0 var1 554s 4 457 372.73542 0.4121448 0 0 var1 554s 5 547 478.47670 0.4634128 0 0 var1 554s 6 533 585.34058 0.5646933 0 0 var1 554s 7 574 693.14526 0.5689683 0 0 var1 554s 8 564 796.18365 0.6186769 0 0 var1 554s 9 589 903.14650 0.6471479 0 0 var1 554s 10 543 1011.29177 0.6915705 0 0 var1 554s 11 500 1117.86235 0.7033984 0 0 var1 554s 12 477 1221.32810 0.6038770 0 0 var1 554s 13 452 1329.16407 0.6517158 0 0 var1 554s 14 457 1437.25620 0.5665318 0 0 var1 554s 15 415 1543.20248 0.5748227 0 0 var1 554s > 554s > coordinates(meuse) <- ~ x + y 554s > variogram(log(zinc)~1, meuse) 555s np dist gamma dir.hor dir.ver id 555s 1 57 79.29244 0.1234479 0 0 var1 555s 2 299 163.97367 0.2162185 0 0 var1 555s 3 419 267.36483 0.3027859 0 0 var1 555s 4 457 372.73542 0.4121448 0 0 var1 555s 5 547 478.47670 0.4634128 0 0 var1 555s 6 533 585.34058 0.5646933 0 0 var1 555s 7 574 693.14526 0.5689683 0 0 var1 555s 8 564 796.18365 0.6186769 0 0 var1 555s 9 589 903.14650 0.6471479 0 0 var1 555s 10 543 1011.29177 0.6915705 0 0 var1 555s 11 500 1117.86235 0.7033984 0 0 var1 555s 12 477 1221.32810 0.6038770 0 0 var1 555s 13 452 1329.16407 0.6517158 0 0 var1 555s 14 457 1437.25620 0.5665318 0 0 var1 555s 15 415 1543.20248 0.5748227 0 0 var1 555s > 555s > ind=seq(1,155,2) 555s > var1= meuse[ind,] 555s > var2= meuse[-ind,] 555s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 555s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 555s > v.cross <- variogram(g) 555s > plot(v.cross) 555s > 555s > 555s BEGIN TEST vdist.R 555s 555s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 555s Copyright (C) 2025 The R Foundation for Statistical Computing 555s Platform: aarch64-unknown-linux-gnu 555s 555s R is free software and comes with ABSOLUTELY NO WARRANTY. 555s You are welcome to redistribute it under certain conditions. 555s Type 'license()' or 'licence()' for distribution details. 555s 555s R is a collaborative project with many contributors. 555s Type 'contributors()' for more information and 555s 'citation()' on how to cite R or R packages in publications. 555s 555s Type 'demo()' for some demos, 'help()' for on-line help, or 555s 'help.start()' for an HTML browser interface to help. 555s Type 'q()' to quit R. 555s 555s > library(sp) 555s > library(gstat) 555s > 555s > data(meuse) 556s > coordinates(meuse) = ~x+y 556s > data(meuse.grid) 556s > gridded(meuse.grid) = ~x+y 556s > 556s > mg = meuse.grid 556s > gridded(mg) = FALSE 556s > mg= mg[1500,] 556s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 556s + vdist=FALSE, maxdist=1000, nmax = 9) 556s [using ordinary kriging] 556s coordinates var1.pred var1.var 556s 1500 (180260, 331300) 5.024413 1.114475 556s > 556s > ## IGNORE_RDIFF_BEGIN 556s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 556s + vdist=TRUE, maxdist=1000, nmax = 9) 556s [using ordinary kriging] 556s coordinates var1.pred var1.var 556s 1500 (180260, 331300) 5.568531 1.112945 556s > ## IGNORE_RDIFF_END 556s > 556s autopkgtest [23:59:45]: test run-unit-test: -----------------------] 556s autopkgtest [23:59:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 556s run-unit-test PASS 557s autopkgtest [23:59:46]: test pkg-r-autopkgtest: preparing testbed 557s Reading package lists... 557s Building dependency tree... 557s Reading state information... 557s Solving dependencies... 558s The following NEW packages will be installed: 558s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 558s dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 558s gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 558s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 558s libasan8 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 558s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 558s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 558s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 558s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 558s libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev linux-libc-dev 558s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 558s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 558s Need to get 103 MB of archives. 558s After this operation, 377 MB of additional disk space will be used. 558s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 558s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 564s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 564s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 564s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 568s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 569s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 569s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 619s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 619s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 619s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 619s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 619s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 619s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 627s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 634s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 642s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 645s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 648s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 653s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 699s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 699s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 699s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 699s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 705s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 756s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 756s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 756s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 756s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 756s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 756s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 756s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 779s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 779s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 779s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 779s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 779s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 779s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 779s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 779s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 805s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 805s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 805s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 805s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 813s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 813s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 813s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 813s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 814s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 815s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 815s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 817s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 817s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 817s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 817s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 817s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 817s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 817s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 817s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 817s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 817s Fetched 103 MB in 4min 19s (397 kB/s) 817s Selecting previously unselected package libc-dev-bin. 817s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 145278 files and directories currently installed.) 817s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 817s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 817s Selecting previously unselected package linux-libc-dev:arm64. 817s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_arm64.deb ... 817s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 817s Selecting previously unselected package libcrypt-dev:arm64. 817s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 817s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 817s Selecting previously unselected package rpcsvc-proto. 817s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 817s Unpacking rpcsvc-proto (1.4.3-1build1) ... 817s Selecting previously unselected package libc6-dev:arm64. 817s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_arm64.deb ... 817s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 817s Selecting previously unselected package libisl23:arm64. 817s Preparing to unpack .../05-libisl23_0.27-1build1_arm64.deb ... 817s Unpacking libisl23:arm64 (0.27-1build1) ... 818s Selecting previously unselected package libmpc3:arm64. 818s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ... 818s Unpacking libmpc3:arm64 (1.3.1-2) ... 818s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 818s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package cpp-15. 818s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package cpp-aarch64-linux-gnu. 818s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 818s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 818s Selecting previously unselected package cpp. 818s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 818s Unpacking cpp (4:15.2.0-4ubuntu1) ... 818s Selecting previously unselected package libcc1-0:arm64. 818s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libitm1:arm64. 818s Preparing to unpack .../12-libitm1_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libasan8:arm64. 818s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package liblsan0:arm64. 818s Preparing to unpack .../14-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libtsan2:arm64. 818s Preparing to unpack .../15-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libubsan1:arm64. 818s Preparing to unpack .../16-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libhwasan0:arm64. 818s Preparing to unpack .../17-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libgcc-15-dev:arm64. 818s Preparing to unpack .../18-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 818s Preparing to unpack .../19-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package gcc-15. 819s Preparing to unpack .../20-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 819s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package gcc-aarch64-linux-gnu. 819s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package gcc. 819s Preparing to unpack .../22-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking gcc (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package libstdc++-15-dev:arm64. 819s Preparing to unpack .../23-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 819s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package g++-15-aarch64-linux-gnu. 819s Preparing to unpack .../24-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 819s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package g++-15. 819s Preparing to unpack .../25-g++-15_15.2.0-12ubuntu1_arm64.deb ... 819s Unpacking g++-15 (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package g++-aarch64-linux-gnu. 819s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package g++. 819s Preparing to unpack .../27-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking g++ (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package build-essential. 820s Preparing to unpack .../28-build-essential_12.12ubuntu2_arm64.deb ... 820s Unpacking build-essential (12.12ubuntu2) ... 820s Selecting previously unselected package dctrl-tools. 820s Preparing to unpack .../29-dctrl-tools_2.24-3build4_arm64.deb ... 820s Unpacking dctrl-tools (2.24-3build4) ... 820s Selecting previously unselected package libgfortran-15-dev:arm64. 820s Preparing to unpack .../30-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 820s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 820s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 820s Preparing to unpack .../31-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 820s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 820s Selecting previously unselected package gfortran-15. 820s Preparing to unpack .../32-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 820s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 820s Selecting previously unselected package gfortran-aarch64-linux-gnu. 820s Preparing to unpack .../33-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 820s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 820s Selecting previously unselected package gfortran. 820s Preparing to unpack .../34-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 820s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 820s Selecting previously unselected package icu-devtools. 820s Preparing to unpack .../35-icu-devtools_78.2-1ubuntu1_arm64.deb ... 820s Unpacking icu-devtools (78.2-1ubuntu1) ... 820s Selecting previously unselected package libblas-dev:arm64. 820s Preparing to unpack .../36-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 820s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 820s Selecting previously unselected package libbz2-dev:arm64. 820s Preparing to unpack .../37-libbz2-dev_1.0.8-6build2_arm64.deb ... 820s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 820s Selecting previously unselected package libdeflate-dev:arm64. 820s Preparing to unpack .../38-libdeflate-dev_1.23-2build1_arm64.deb ... 820s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 820s Selecting previously unselected package libicu-dev:arm64. 820s Preparing to unpack .../39-libicu-dev_78.2-1ubuntu1_arm64.deb ... 820s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 820s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 820s Preparing to unpack .../40-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 820s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 820s Selecting previously unselected package libjpeg8-dev:arm64. 820s Preparing to unpack .../41-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 820s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 821s Selecting previously unselected package libjpeg-dev:arm64. 821s Preparing to unpack .../42-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 821s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 821s Selecting previously unselected package liblapack-dev:arm64. 821s Preparing to unpack .../43-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 821s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 821s Selecting previously unselected package libncurses-dev:arm64. 821s Preparing to unpack .../44-libncurses-dev_6.6+20251231-1_arm64.deb ... 821s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 821s Selecting previously unselected package libpcre2-16-0:arm64. 821s Preparing to unpack .../45-libpcre2-16-0_10.46-1_arm64.deb ... 821s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 821s Selecting previously unselected package libpcre2-32-0:arm64. 821s Preparing to unpack .../46-libpcre2-32-0_10.46-1_arm64.deb ... 821s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 821s Selecting previously unselected package libpcre2-posix3:arm64. 821s Preparing to unpack .../47-libpcre2-posix3_10.46-1_arm64.deb ... 821s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 821s Selecting previously unselected package libpcre2-dev:arm64. 821s Preparing to unpack .../48-libpcre2-dev_10.46-1_arm64.deb ... 821s 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.../59-pkg-r-autopkgtest_20250812_all.deb ... 821s Unpacking pkg-r-autopkgtest (20250812) ... 821s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 821s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 821s Setting up libpcre2-16-0:arm64 (10.46-1) ... 821s Setting up libpcre2-32-0:arm64 (10.46-1) ... 821s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 821s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 821s Setting up rpcsvc-proto (1.4.3-1build1) ... 821s Setting up libmpc3:arm64 (1.3.1-2) ... 821s Setting up icu-devtools (78.2-1ubuntu1) ... 821s Setting up pkgconf-bin (1.8.1-4build1) ... 821s Setting up liblzma-dev:arm64 (5.8.2-2) ... 821s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 821s Setting up libpcre2-posix3:arm64 (10.46-1) ... 821s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 821s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 821s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 821s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 822s Setting up libisl23:arm64 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doesn't exist 822s Setting up g++ (4:15.2.0-4ubuntu1) ... 822s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 822s Setting up build-essential (12.12ubuntu2) ... 822s Setting up r-base-dev (4.5.2-1ubuntu2) ... 822s Setting up pkg-r-autopkgtest (20250812) ... 822s Processing triggers for libc-bin (2.42-2ubuntu4) ... 822s Processing triggers for man-db (2.13.1-1build1) ... 822s Processing triggers for install-info (7.2-5) ... 823s autopkgtest [00:04:12]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 823s autopkgtest [00:04:12]: test pkg-r-autopkgtest: [----------------------- 824s Test: Try to load the R library gstat 824s 824s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 824s Copyright (C) 2025 The R Foundation for Statistical Computing 824s Platform: aarch64-unknown-linux-gnu 824s 824s R is free software and comes with ABSOLUTELY NO WARRANTY. 824s You are welcome to redistribute it under certain conditions. 824s Type 'license()' or 'licence()' for distribution details. 824s 824s R is a collaborative project with many contributors. 824s Type 'contributors()' for more information and 824s 'citation()' on how to cite R or R packages in publications. 824s 824s Type 'demo()' for some demos, 'help()' for on-line help, or 824s 'help.start()' for an HTML browser interface to help. 824s Type 'q()' to quit R. 824s 824s > library('gstat') 824s > 825s autopkgtest [00:04:14]: test pkg-r-autopkgtest: -----------------------] 825s pkg-r-autopkgtest PASSautopkgtest [00:04:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 825s 825s autopkgtest [00:04:14]: @@@@@@@@@@@@@@@@@@@@ summary 825s run-unit-test PASS 825s pkg-r-autopkgtest PASS