0s autopkgtest [23:39:13]: starting date and time: 2026-02-09 23:39:13+0000 0s autopkgtest [23:39:13]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:39:13]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gi4pwt71/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-11.secgroup --name adt-resolute-arm64-r-cran-gstat-20260209-230136-juju-7f2275-prod-proposed-migration-environment-20-91bd5d9d-bbdb-49eb-a517-918383563f3a --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-r-cran-gstat-20260209-230136-juju-7f2275-prod-proposed-migration-environment-20-91bd5d9d-bbdb-49eb-a517-918383563f3a from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 121s autopkgtest [23:41:14]: testbed dpkg architecture: arm64 122s autopkgtest [23:41:15]: testbed apt version: 3.1.15 122s autopkgtest [23:41:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s autopkgtest [23:41:15]: testbed release detected to be: None 123s autopkgtest [23:41:16]: updating testbed package index (apt update) 123s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 123s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 123s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 128s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 129s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 129s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 129s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 129s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 129s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 134s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 134s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 134s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 135s Fetched 3862 kB in 11s (361 kB/s) 136s Reading package lists... 137s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 137s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 138s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 138s The following packages will be upgraded: 138s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 138s libip6tc2 libxtables12 wget 139s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 2534 kB of archives. 139s After this operation, 18.4 kB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 139s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 139s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 141s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 141s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 141s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 141s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 141s dpkg-preconfigure: unable to re-open stdin: No such file or directory 141s Fetched 2534 kB in 2s (1099 kB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 141s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 141s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 142s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 142s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 142s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 142s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 142s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 142s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 142s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 142s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 142s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 142s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 142s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 142s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 142s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 142s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 142s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 142s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 142s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 142s Setting up wget (1.25.0-2ubuntu4) ... 142s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 142s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 143s Setting up dracut-install (109-11ubuntu1) ... 143s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 143s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 143s Setting up iptables (1.8.11-2ubuntu3) ... 143s Setting up iproute2 (6.18.0-1ubuntu1) ... 143s Processing triggers for man-db (2.13.1-1build1) ... 144s Processing triggers for install-info (7.2-5) ... 144s Processing triggers for libc-bin (2.42-2ubuntu4) ... 144s autopkgtest [23:41:37]: upgrading testbed (apt dist-upgrade and autopurge) 144s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Calculating upgrade... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s autopkgtest [23:41:42]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 149s autopkgtest [23:41:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (dsc) [2319 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (tar) [2283 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-gstat 2.1-3-2 (diff) [3816 B] 154s gpgv: Signature made Wed Oct 15 12:45:30 2025 UTC 154s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 154s gpgv: issuer "tille@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-2.dsc: no acceptable signature found 155s autopkgtest [23:41:48]: testing package r-cran-gstat version 2.1-3-2 155s autopkgtest [23:41:48]: build not needed 157s autopkgtest [23:41:50]: test run-unit-test: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Solving dependencies... 158s The following NEW packages will be installed: 158s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 158s gdal-plugins libabsl20260107 libaec0 libaom3 libarmadillo15 libarpack2t64 158s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 158s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 158s libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran5 libgif7 158s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 158s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 158s libhwy1t64 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjxl0.11 158s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 158s libltdl7 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 libodbc2 158s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 158s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 158s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 158s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 158s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 158s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 158s libxt6t64 libyuv0 mysql-common proj-data r-base-core r-cran-abind 158s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-dbi 158s r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi r-cran-farver 158s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-ggplot2 158s r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable r-cran-intervals 158s r-cran-isoband r-cran-kernsmooth r-cran-labeling r-cran-lattice 158s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 158s r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme 158s r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 158s r-cran-proxy r-cran-r6 r-cran-raster r-cran-rcolorbrewer r-cran-rcpp 158s r-cran-rlang r-cran-s2 r-cran-scales r-cran-sf r-cran-sftime r-cran-sp 158s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-tibble 158s r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 158s r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils 158s zip 158s 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 171 MB of archives. 158s After this operation, 367 MB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 158s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 160s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 160s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 160s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 160s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-data all 3.12.1+dfsg-1 [278 kB] 160s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-plugins arm64 3.12.1+dfsg-1 [26.8 kB] 160s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libabsl20260107 arm64 20260107.0-1 [563 kB] 161s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.5-1 [21.8 kB] 161s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.13.1-2 [1773 kB] 165s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 165s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 165s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 170s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarpack2t64 arm64 3.9.1-6 [94.9 kB] 171s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsuperlu7 arm64 7.0.1+dfsg1-2 [171 kB] 171s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarmadillo15 arm64 1:15.2.1+dfsg-2 [108 kB] 172s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdav1d7 arm64 1.5.3-1 [297 kB] 172s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgav1-2 arm64 0.20.0-2build1 [547 kB] 173s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 173s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 173s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libyuv0 arm64 0.0.1922.20260106-1 [160 kB] 173s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 libavif16 arm64 1.3.0-1ubuntu3 [112 kB] 173s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libsnappy1v5 arm64 1.2.2-2 [30.1 kB] 173s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libblosc1 arm64 1.21.5+ds-2 [25.9 kB] 173s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 173s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 173s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 173s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 173s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 174s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcfitsio10t64 arm64 4.6.3-1 [517 kB] 174s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 174s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1build1 [148 kB] 174s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 174s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfyba0t64 arm64 4.1.1-11build2 [119 kB] 174s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [24.4 kB] 174s Get:36 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfreexl1 arm64 2.0.0-1build3 [42.4 kB] 174s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos3.14.1 arm64 3.14.1-2 [935 kB] 176s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos-c1t64 arm64 3.14.1-2 [110 kB] 176s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.7.1-1 [7950 kB] 190s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 190s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 190s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 190s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 190s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 191s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.7.1-1 [1370 kB] 194s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeotiff5 arm64 1.7.4-1build1 [62.0 kB] 194s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu3 [35.8 kB] 194s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.5-1 [17.0 kB] 194s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf4-0 arm64 4.3.1-2 [304 kB] 194s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.6+repack-2 [1287 kB] 198s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.21.2-1 [13.9 kB] 198s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.21.2-1 [9696 B] 198s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.21.2-1 [502 kB] 198s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwy1t64 arm64 1.3.0-2 [513 kB] 198s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 198s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libjxl0.11 arm64 0.11.1-6ubuntu1 [909 kB] 200s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB] 200s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlbase1t64 arm64 1.3.0-13 [48.2 kB] 200s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmldom1t64 arm64 1.3.0-13 [143 kB] 200s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlengine1t64 arm64 1.3.0-13 [68.9 kB] 200s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 200s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmuparser2v5 arm64 2.3.4-2 [129 kB] 200s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 200s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libmysqlclient24 arm64 8.4.8-0ubuntu1 [1244 kB] 203s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.6+repack-2 [59.1 kB] 203s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 205s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 205s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbc2 arm64 2.3.14-1 [143 kB] 205s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 unixodbc-common all 2.3.14-1 [8792 B] 205s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbcinst2 arm64 2.3.14-1 [30.6 kB] 205s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 205s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libgpgmepp6t64 arm64 1.24.2-3ubuntu2 [117 kB] 205s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libpoppler147 arm64 25.03.0-11.1 [1149 kB] 210s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libpq5 arm64 18.1-2 [151 kB] 210s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 210s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 librttopo1 arm64 1.1.0-4build1 [188 kB] 210s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libspatialite8t64 arm64 5.1.0-3ubuntu1 [1816 kB] 214s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build2 [913 kB] 215s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgdal38 arm64 3.12.1+dfsg-1 [10.4 MB] 233s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 233s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 233s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 233s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 233s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 233s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 233s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 233s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 233s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 233s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 233s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 233s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 233s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 237s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 237s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 237s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 240s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-data all 2.2.28-8 [19.3 kB] 240s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-0 arm64 2.2.28-8 [53.0 kB] 240s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 240s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 240s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 240s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 240s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 342s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 342s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 344s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB] 344s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 344s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-e1071 arm64 1.7-17-1 [576 kB] 345s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-kernsmooth arm64 2.23-26-1build1 [93.6 kB] 345s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB] 345s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 347s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 347s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 348s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 348s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dotcall64 arm64 1.2-1 [35.9 kB] 348s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 350s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 352s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 352s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 352s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 358s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spam arm64 2.11-1-1 [2737 kB] 365s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 368s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-maps arm64 3.4.2.1-1 [2350 kB] 375s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fields arm64 16.3.1-1 [3762 kB] 386s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fnn arm64 1.1.4.1-1 [125 kB] 386s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-globals all 0.19.0-1 [160 kB] 386s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 386s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB] 387s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 389s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 389s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 389s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 392s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 392s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 392s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 395s Get:135 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 399s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 405s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 413s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-4-1 [3546 kB] 419s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 419s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 419s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 420s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 422s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 422s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 422s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 425s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 425s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 425s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 425s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 425s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 435s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 440s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-zoo arm64 1.8-15-1 [1025 kB] 442s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB] 445s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s2 arm64 1.1.9-1build1 [1766 kB] 449s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-units arm64 0.8-7+dfsg-2 [289 kB] 449s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sf arm64 1.0-19+dfsg-2build2 [3240 kB] 455s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 456s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xts arm64 0.14.1-1 [1189 kB] 458s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-intervals arm64 0.15.5-1 [602 kB] 459s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spacetime all 1.3-3-2 [2780 kB] 464s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stars all 0.7-0-1 [4415 kB] 473s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gstat arm64 2.1-3-2 [2328 kB] 478s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 541s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-terra arm64 1.8-70-1build2 [4198 kB] 561s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-raster arm64 3.6-31-2 [3148 kB] 569s Preconfiguring packages ... 570s Fetched 171 MB in 6min 51s (415 kB/s) 570s Selecting previously unselected package fonts-dejavu-mono. 570s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 570s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 570s Unpacking fonts-dejavu-mono (2.37-8build1) ... 570s Selecting previously unselected package fonts-dejavu-core. 570s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 570s Unpacking fonts-dejavu-core (2.37-8build1) ... 570s Selecting previously unselected package fontconfig-config. 570s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 570s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 570s Selecting previously unselected package libfontconfig1:arm64. 570s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 570s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 570s Selecting previously unselected package fontconfig. 570s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 570s Unpacking fontconfig (2.17.1-3ubuntu1) ... 570s Selecting previously unselected package gdal-data. 570s Preparing to unpack .../005-gdal-data_3.12.1+dfsg-1_all.deb ... 570s Unpacking gdal-data (3.12.1+dfsg-1) ... 570s Selecting previously unselected package gdal-plugins:arm64. 570s Preparing to unpack .../006-gdal-plugins_3.12.1+dfsg-1_arm64.deb ... 570s Unpacking gdal-plugins:arm64 (3.12.1+dfsg-1) ... 570s Selecting previously unselected package libabsl20260107:arm64. 570s Preparing to unpack .../007-libabsl20260107_20260107.0-1_arm64.deb ... 570s Unpacking libabsl20260107:arm64 (20260107.0-1) ... 570s Selecting previously unselected package libaec0:arm64. 570s Preparing to unpack .../008-libaec0_1.1.5-1_arm64.deb ... 570s Unpacking libaec0:arm64 (1.1.5-1) ... 570s Selecting previously unselected package libaom3:arm64. 570s Preparing to unpack .../009-libaom3_3.13.1-2_arm64.deb ... 570s Unpacking libaom3:arm64 (3.13.1-2) ... 570s Selecting previously unselected package libblas3:arm64. 570s Preparing to unpack .../010-libblas3_3.12.1-7ubuntu1_arm64.deb ... 570s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 570s Selecting previously unselected package libgfortran5:arm64. 570s Preparing to unpack .../011-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 570s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 570s Selecting previously unselected package liblapack3:arm64. 570s Preparing to unpack .../012-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 570s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 571s Selecting previously unselected package libarpack2t64:arm64. 571s Preparing to unpack .../013-libarpack2t64_3.9.1-6_arm64.deb ... 571s Unpacking libarpack2t64:arm64 (3.9.1-6) ... 571s Selecting previously unselected package libsuperlu7:arm64. 571s Preparing to unpack .../014-libsuperlu7_7.0.1+dfsg1-2_arm64.deb ... 571s Unpacking libsuperlu7:arm64 (7.0.1+dfsg1-2) ... 571s Selecting previously unselected package libarmadillo15. 571s Preparing to unpack .../015-libarmadillo15_1%3a15.2.1+dfsg-2_arm64.deb ... 571s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 571s Selecting previously unselected package libdav1d7:arm64. 571s Preparing to unpack .../016-libdav1d7_1.5.3-1_arm64.deb ... 571s Unpacking libdav1d7:arm64 (1.5.3-1) ... 571s Selecting previously unselected package libgav1-2:arm64. 571s Preparing to unpack .../017-libgav1-2_0.20.0-2build1_arm64.deb ... 571s Unpacking libgav1-2:arm64 (0.20.0-2build1) ... 571s Selecting previously unselected package libjpeg-turbo8:arm64. 571s Preparing to unpack .../018-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 571s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 571s Selecting previously unselected package libjpeg8:arm64. 571s Preparing to unpack .../019-libjpeg8_8c-2ubuntu11_arm64.deb ... 571s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 571s Selecting previously unselected package libyuv0:arm64. 571s Preparing to unpack .../020-libyuv0_0.0.1922.20260106-1_arm64.deb ... 571s Unpacking libyuv0:arm64 (0.0.1922.20260106-1) ... 571s Selecting previously unselected package libavif16:arm64. 571s Preparing to unpack .../021-libavif16_1.3.0-1ubuntu3_arm64.deb ... 571s Unpacking libavif16:arm64 (1.3.0-1ubuntu3) ... 571s Selecting previously unselected package libsnappy1v5:arm64. 571s Preparing to unpack .../022-libsnappy1v5_1.2.2-2_arm64.deb ... 571s Unpacking libsnappy1v5:arm64 (1.2.2-2) ... 571s Selecting previously unselected package libblosc1:arm64. 571s Preparing to unpack .../023-libblosc1_1.21.5+ds-2_arm64.deb ... 571s Unpacking libblosc1:arm64 (1.21.5+ds-2) ... 571s Selecting previously unselected package libpixman-1-0:arm64. 571s Preparing to unpack .../024-libpixman-1-0_0.46.4-1_arm64.deb ... 571s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 571s Selecting previously unselected package libxcb-render0:arm64. 571s Preparing to unpack .../025-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 571s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 571s Selecting previously unselected package libxcb-shm0:arm64. 571s Preparing to unpack .../026-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 571s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 571s Selecting previously unselected package libxrender1:arm64. 571s Preparing to unpack .../027-libxrender1_1%3a0.9.12-1_arm64.deb ... 571s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 571s Selecting previously unselected package libcairo2:arm64. 571s Preparing to unpack .../028-libcairo2_1.18.4-3_arm64.deb ... 571s Unpacking libcairo2:arm64 (1.18.4-3) ... 571s Selecting previously unselected package libcfitsio10t64:arm64. 571s Preparing to unpack .../029-libcfitsio10t64_4.6.3-1_arm64.deb ... 571s Unpacking libcfitsio10t64:arm64 (4.6.3-1) ... 571s Selecting previously unselected package libdatrie1:arm64. 571s Preparing to unpack .../030-libdatrie1_0.2.14-1_arm64.deb ... 571s Unpacking libdatrie1:arm64 (0.2.14-1) ... 571s Selecting previously unselected package libde265-0:arm64. 571s Preparing to unpack .../031-libde265-0_1.0.16-1build1_arm64.deb ... 571s Unpacking libde265-0:arm64 (1.0.16-1build1) ... 571s Selecting previously unselected package libdeflate0:arm64. 572s Preparing to unpack .../032-libdeflate0_1.23-2build1_arm64.deb ... 572s Unpacking libdeflate0:arm64 (1.23-2build1) ... 572s Selecting previously unselected package libfyba0t64:arm64. 572s Preparing to unpack .../033-libfyba0t64_4.1.1-11build2_arm64.deb ... 572s Unpacking libfyba0t64:arm64 (4.1.1-11build2) ... 572s Selecting previously unselected package libminizip1t64:arm64. 572s Preparing to unpack .../034-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 572s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 572s Selecting previously unselected package libfreexl1:arm64. 572s Preparing to unpack .../035-libfreexl1_2.0.0-1build3_arm64.deb ... 572s Unpacking libfreexl1:arm64 (2.0.0-1build3) ... 572s Selecting previously unselected package libgeos3.14.1:arm64. 572s Preparing to unpack .../036-libgeos3.14.1_3.14.1-2_arm64.deb ... 572s Unpacking libgeos3.14.1:arm64 (3.14.1-2) ... 572s Selecting previously unselected package libgeos-c1t64:arm64. 572s Preparing to unpack .../037-libgeos-c1t64_3.14.1-2_arm64.deb ... 572s Unpacking libgeos-c1t64:arm64 (3.14.1-2) ... 572s Selecting previously unselected package proj-data. 572s Preparing to unpack .../038-proj-data_9.7.1-1_all.deb ... 572s Unpacking proj-data (9.7.1-1) ... 572s Selecting previously unselected package libjbig0:arm64. 572s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 572s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 572s Selecting previously unselected package liblerc4:arm64. 572s Preparing to unpack .../040-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 572s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 572s Selecting previously unselected package libsharpyuv0:arm64. 572s Preparing to unpack .../041-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 572s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 572s Selecting previously unselected package libwebp7:arm64. 572s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_arm64.deb ... 572s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 572s Selecting previously unselected package libtiff6:arm64. 572s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 572s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 572s Selecting previously unselected package libproj25:arm64. 572s Preparing to unpack .../044-libproj25_9.7.1-1_arm64.deb ... 572s Unpacking libproj25:arm64 (9.7.1-1) ... 572s Selecting previously unselected package libgeotiff5:arm64. 572s Preparing to unpack .../045-libgeotiff5_1.7.4-1build1_arm64.deb ... 572s Unpacking libgeotiff5:arm64 (1.7.4-1build1) ... 572s Selecting previously unselected package libgif7:arm64. 572s Preparing to unpack .../046-libgif7_5.2.2-1ubuntu3_arm64.deb ... 572s Unpacking libgif7:arm64 (5.2.2-1ubuntu3) ... 572s Selecting previously unselected package libsz2:arm64. 572s Preparing to unpack .../047-libsz2_1.1.5-1_arm64.deb ... 572s Unpacking libsz2:arm64 (1.1.5-1) ... 572s Selecting previously unselected package libhdf4-0:arm64. 572s Preparing to unpack .../048-libhdf4-0_4.3.1-2_arm64.deb ... 572s Unpacking libhdf4-0:arm64 (4.3.1-2) ... 572s Selecting previously unselected package libhdf5-310:arm64. 572s Preparing to unpack .../049-libhdf5-310_1.14.6+repack-2_arm64.deb ... 572s Unpacking libhdf5-310:arm64 (1.14.6+repack-2) ... 572s Selecting previously unselected package libheif-plugin-aomdec:arm64. 572s Preparing to unpack .../050-libheif-plugin-aomdec_1.21.2-1_arm64.deb ... 572s Unpacking libheif-plugin-aomdec:arm64 (1.21.2-1) ... 572s Selecting previously unselected package libheif-plugin-libde265:arm64. 572s Preparing to unpack .../051-libheif-plugin-libde265_1.21.2-1_arm64.deb ... 572s Unpacking libheif-plugin-libde265:arm64 (1.21.2-1) ... 572s Selecting previously unselected package libheif1:arm64. 572s Preparing to unpack .../052-libheif1_1.21.2-1_arm64.deb ... 572s Unpacking libheif1:arm64 (1.21.2-1) ... 573s Selecting previously unselected package libhwy1t64:arm64. 573s Preparing to unpack .../053-libhwy1t64_1.3.0-2_arm64.deb ... 573s Unpacking libhwy1t64:arm64 (1.3.0-2) ... 573s Selecting previously unselected package liblcms2-2:arm64. 573s Preparing to unpack .../054-liblcms2-2_2.17-1_arm64.deb ... 573s Unpacking liblcms2-2:arm64 (2.17-1) ... 573s Selecting previously unselected package libjxl0.11:arm64. 573s Preparing to unpack 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573s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 573s Selecting previously unselected package libmuparser2v5:arm64. 573s Preparing to unpack .../061-libmuparser2v5_2.3.4-2_arm64.deb ... 573s Unpacking libmuparser2v5:arm64 (2.3.4-2) ... 573s Selecting previously unselected package mysql-common. 573s Preparing to unpack .../062-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 573s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 573s Selecting previously unselected package libmysqlclient24:arm64. 573s Preparing to unpack .../063-libmysqlclient24_8.4.8-0ubuntu1_arm64.deb ... 573s Unpacking libmysqlclient24:arm64 (8.4.8-0ubuntu1) ... 573s Selecting previously unselected package libhdf5-hl-310:arm64. 573s Preparing to unpack .../064-libhdf5-hl-310_1.14.6+repack-2_arm64.deb ... 573s Unpacking libhdf5-hl-310:arm64 (1.14.6+repack-2) ... 573s Selecting previously unselected package libnetcdf22:arm64. 573s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 573s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 573s Selecting previously unselected package libltdl7:arm64. 573s Preparing to unpack .../066-libltdl7_2.5.4-9_arm64.deb ... 573s Unpacking libltdl7:arm64 (2.5.4-9) ... 573s Selecting previously unselected package libodbc2:arm64. 573s Preparing to unpack .../067-libodbc2_2.3.14-1_arm64.deb ... 573s Unpacking libodbc2:arm64 (2.3.14-1) ... 573s Selecting previously unselected package unixodbc-common. 573s Preparing to unpack .../068-unixodbc-common_2.3.14-1_all.deb ... 573s Unpacking unixodbc-common (2.3.14-1) ... 573s Selecting previously unselected package libodbcinst2:arm64. 573s Preparing to unpack .../069-libodbcinst2_2.3.14-1_arm64.deb ... 573s Unpacking libodbcinst2:arm64 (2.3.14-1) ... 573s Selecting previously unselected package libopenjp2-7:arm64. 573s Preparing to unpack .../070-libopenjp2-7_2.5.4-1_arm64.deb ... 573s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 573s Selecting previously unselected package libgpgmepp6t64:arm64. 573s Preparing to unpack .../071-libgpgmepp6t64_1.24.2-3ubuntu2_arm64.deb ... 573s Unpacking libgpgmepp6t64:arm64 (1.24.2-3ubuntu2) ... 573s Selecting previously unselected package libpoppler147:arm64. 573s Preparing to unpack .../072-libpoppler147_25.03.0-11.1_arm64.deb ... 573s Unpacking libpoppler147:arm64 (25.03.0-11.1) ... 573s Selecting previously unselected package libpq5:arm64. 573s Preparing to unpack .../073-libpq5_18.1-2_arm64.deb ... 573s Unpacking libpq5:arm64 (18.1-2) ... 573s Selecting previously unselected package libqhull-r8.0:arm64. 573s Preparing to unpack .../074-libqhull-r8.0_2020.2-8_arm64.deb ... 573s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 573s Selecting previously unselected package librttopo1:arm64. 574s Preparing to unpack .../075-librttopo1_1.1.0-4build1_arm64.deb ... 574s Unpacking librttopo1:arm64 (1.1.0-4build1) ... 574s Selecting previously unselected package libspatialite8t64:arm64. 574s Preparing to unpack .../076-libspatialite8t64_5.1.0-3ubuntu1_arm64.deb ... 574s Unpacking libspatialite8t64:arm64 (5.1.0-3ubuntu1) ... 574s Selecting previously unselected package libxerces-c3.2t64:arm64. 574s Preparing to unpack .../077-libxerces-c3.2t64_3.2.4+debian-1.3build2_arm64.deb ... 574s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build2) ... 574s Selecting previously unselected package libgdal38:arm64. 574s Preparing to unpack .../078-libgdal38_3.12.1+dfsg-1_arm64.deb ... 574s Unpacking libgdal38:arm64 (3.12.1+dfsg-1) ... 574s Selecting previously unselected package libgraphite2-3:arm64. 574s Preparing to unpack .../079-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 574s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 574s Selecting previously unselected package libharfbuzz0b:arm64. 574s Preparing to unpack .../080-libharfbuzz0b_12.3.2-1_arm64.deb ... 574s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 574s Selecting previously unselected package x11-common. 574s Preparing to unpack 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(1.57.0-1) ... 574s Selecting previously unselected package libpangocairo-1.0-0:arm64. 574s Preparing to unpack .../087-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 574s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 574s Selecting previously unselected package libpaper2:arm64. 574s Preparing to unpack .../088-libpaper2_2.2.5-0.3build1_arm64.deb ... 574s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 574s Selecting previously unselected package libpaper-utils. 574s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 574s Unpacking libpaper-utils (2.2.5-0.3build1) ... 574s Selecting previously unselected package libsm6:arm64. 574s Preparing to unpack .../090-libsm6_2%3a1.2.6-1build1_arm64.deb ... 574s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 574s Selecting previously unselected package libtcl8.6:arm64. 574s Preparing to unpack .../091-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 574s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 574s Selecting previously unselected package libxft2:arm64. 574s Preparing to unpack .../092-libxft2_2.3.6-1build2_arm64.deb ... 574s Unpacking libxft2:arm64 (2.3.6-1build2) ... 574s Selecting previously unselected package libxss1:arm64. 574s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build4_arm64.deb ... 574s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 574s Selecting previously unselected package libtk8.6:arm64. 575s Preparing to unpack .../094-libtk8.6_8.6.17-1_arm64.deb ... 575s Unpacking libtk8.6:arm64 (8.6.17-1) ... 575s Selecting previously unselected package libudunits2-data. 575s Preparing to unpack .../095-libudunits2-data_2.2.28-8_all.deb ... 575s Unpacking libudunits2-data (2.2.28-8) ... 575s Selecting previously unselected package libudunits2-0:arm64. 575s Preparing to unpack .../096-libudunits2-0_2.2.28-8_arm64.deb ... 575s Unpacking libudunits2-0:arm64 (2.2.28-8) ... 575s Selecting previously unselected package libxt6t64:arm64. 575s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 575s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 575s Selecting previously unselected package zip. 575s Preparing to unpack .../098-zip_3.0-15ubuntu3_arm64.deb ... 575s Unpacking zip (3.0-15ubuntu3) ... 575s Selecting previously unselected package unzip. 575s Preparing to unpack .../099-unzip_6.0-29ubuntu1_arm64.deb ... 575s Unpacking unzip (6.0-29ubuntu1) ... 575s Selecting previously unselected package xdg-utils. 575s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu2_all.deb ... 575s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 575s Selecting previously unselected package r-base-core. 575s Preparing to unpack .../101-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 575s Unpacking r-base-core (4.5.2-1ubuntu2) ... 575s Selecting previously unselected package r-cran-abind. 575s Preparing to unpack .../102-r-cran-abind_1.4-8-1build1_all.deb ... 575s Unpacking r-cran-abind (1.4-8-1build1) ... 575s Selecting previously unselected package r-cran-mass. 575s Preparing to unpack .../103-r-cran-mass_7.3-65-1_arm64.deb ... 575s Unpacking r-cran-mass (7.3-65-1) ... 575s Selecting previously unselected package r-cran-class. 575s Preparing to unpack .../104-r-cran-class_7.3-23-1_arm64.deb ... 575s Unpacking r-cran-class (7.3-23-1) ... 575s Selecting previously unselected package r-cran-proxy. 575s Preparing to unpack .../105-r-cran-proxy_0.4-27-1_arm64.deb ... 575s Unpacking r-cran-proxy (0.4-27-1) ... 575s Selecting previously unselected package r-cran-e1071. 575s Preparing to unpack .../106-r-cran-e1071_1.7-17-1_arm64.deb ... 575s Unpacking r-cran-e1071 (1.7-17-1) ... 575s Selecting previously unselected package r-cran-kernsmooth. 575s Preparing to unpack .../107-r-cran-kernsmooth_2.23-26-1build1_arm64.deb ... 575s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 575s Selecting previously unselected package r-cran-classint. 575s Preparing to unpack .../108-r-cran-classint_0.4-11+dfsg-1_arm64.deb ... 575s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 575s Selecting previously unselected package r-cran-cli. 575s Preparing to unpack .../109-r-cran-cli_3.6.4-1_arm64.deb ... 575s Unpacking r-cran-cli (3.6.4-1) ... 575s Selecting previously unselected package r-cran-codetools. 575s Preparing to unpack .../110-r-cran-codetools_0.2-20-1build1_all.deb ... 575s Unpacking r-cran-codetools (0.2-20-1build1) ... 575s Selecting previously unselected package r-cran-dbi. 576s Preparing to unpack .../111-r-cran-dbi_1.2.3-1build1_all.deb ... 576s Unpacking r-cran-dbi (1.2.3-1build1) ... 576s Selecting previously unselected package r-cran-digest. 576s Preparing to unpack .../112-r-cran-digest_0.6.39-1_arm64.deb ... 576s Unpacking r-cran-digest (0.6.39-1) ... 576s Selecting previously unselected package r-cran-dotcall64. 576s Preparing to unpack .../113-r-cran-dotcall64_1.2-1_arm64.deb ... 576s Unpacking r-cran-dotcall64 (1.2-1) ... 576s Selecting previously unselected package r-cran-fansi. 576s Preparing to unpack .../114-r-cran-fansi_1.0.6-2_arm64.deb ... 576s Unpacking r-cran-fansi (1.0.6-2) ... 576s Selecting previously unselected package r-cran-farver. 576s Preparing to unpack .../115-r-cran-farver_2.1.2-1_arm64.deb ... 576s Unpacking r-cran-farver (2.1.2-1) ... 576s Selecting previously unselected package r-cran-littler. 576s Preparing to unpack .../116-r-cran-littler_0.3.22-1_arm64.deb ... 576s Unpacking r-cran-littler (0.3.22-1) ... 576s Selecting previously unselected package r-cran-pkgkitten. 576s Preparing to unpack .../117-r-cran-pkgkitten_0.2.4-1_all.deb ... 576s Unpacking r-cran-pkgkitten (0.2.4-1) ... 576s Selecting previously unselected package r-cran-rcpp. 576s Preparing to unpack .../118-r-cran-rcpp_1.1.0-1_arm64.deb ... 576s Unpacking r-cran-rcpp (1.1.0-1) ... 576s Selecting previously unselected package r-cran-spam. 576s Preparing to unpack .../119-r-cran-spam_2.11-1-1_arm64.deb ... 576s Unpacking r-cran-spam (2.11-1-1) ... 576s Selecting previously unselected package r-cran-viridislite. 576s Preparing to unpack .../120-r-cran-viridislite_0.4.3-1_all.deb ... 576s Unpacking r-cran-viridislite (0.4.3-1) ... 576s Selecting previously unselected package r-cran-maps. 576s Preparing to unpack .../121-r-cran-maps_3.4.2.1-1_arm64.deb ... 576s Unpacking r-cran-maps (3.4.2.1-1) ... 576s Selecting previously unselected package r-cran-fields. 576s Preparing to unpack .../122-r-cran-fields_16.3.1-1_arm64.deb ... 576s Unpacking r-cran-fields (16.3.1-1) ... 576s Selecting previously unselected package r-cran-fnn. 576s Preparing to unpack .../123-r-cran-fnn_1.1.4.1-1_arm64.deb ... 576s Unpacking r-cran-fnn (1.1.4.1-1) ... 576s Selecting previously unselected package r-cran-globals. 576s Preparing to unpack .../124-r-cran-globals_0.19.0-1_all.deb ... 576s Unpacking r-cran-globals (0.19.0-1) ... 576s Selecting previously unselected package r-cran-listenv. 576s Preparing to unpack .../125-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 576s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 576s Selecting previously unselected package r-cran-parallelly. 576s Preparing to unpack .../126-r-cran-parallelly_1.42.0-1_arm64.deb ... 576s Unpacking r-cran-parallelly (1.42.0-1) ... 576s Selecting previously unselected package r-cran-future. 576s Preparing to unpack .../127-r-cran-future_1.34.0+dfsg-1_all.deb ... 576s Unpacking r-cran-future (1.34.0+dfsg-1) ... 576s Selecting previously unselected package r-cran-future.apply. 576s Preparing to unpack .../128-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 576s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 576s Selecting previously unselected package r-cran-glue. 576s Preparing to unpack .../129-r-cran-glue_1.8.0-1_arm64.deb ... 576s Unpacking r-cran-glue (1.8.0-1) ... 576s Selecting previously unselected package r-cran-rlang. 576s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_arm64.deb ... 576s Unpacking r-cran-rlang (1.1.5-3) ... 577s Selecting previously unselected package r-cran-lifecycle. 577s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 577s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 577s Selecting previously unselected package r-cran-gtable. 577s Preparing to unpack .../132-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 577s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 577s Selecting previously unselected package r-cran-isoband. 577s Preparing to unpack .../133-r-cran-isoband_0.2.7-1_arm64.deb ... 577s Unpacking r-cran-isoband (0.2.7-1) ... 577s Selecting previously unselected package r-cran-lattice. 577s Preparing to unpack .../134-r-cran-lattice_0.22-9-1_arm64.deb ... 577s Unpacking r-cran-lattice (0.22-9-1) ... 577s Selecting previously unselected package r-cran-nlme. 577s Preparing to unpack .../135-r-cran-nlme_3.1.168-1_arm64.deb ... 577s Unpacking r-cran-nlme (3.1.168-1) ... 577s Selecting previously unselected package r-cran-matrix. 577s Preparing to unpack .../136-r-cran-matrix_1.7-4-1_arm64.deb ... 577s Unpacking r-cran-matrix (1.7-4-1) ... 577s Selecting previously unselected package r-cran-mgcv. 577s Preparing to unpack .../137-r-cran-mgcv_1.9-4-1_arm64.deb ... 577s Unpacking r-cran-mgcv (1.9-4-1) ... 577s Selecting previously unselected package r-cran-labeling. 577s Preparing to unpack .../138-r-cran-labeling_0.4.3-1_all.deb ... 577s Unpacking r-cran-labeling (0.4.3-1) ... 577s Selecting previously unselected package r-cran-r6. 577s Preparing to unpack .../139-r-cran-r6_2.6.1-1_all.deb ... 577s Unpacking r-cran-r6 (2.6.1-1) ... 577s Selecting previously unselected package r-cran-rcolorbrewer. 577s Preparing to unpack .../140-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 577s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 577s Selecting previously unselected package r-cran-scales. 577s Preparing to unpack .../141-r-cran-scales_1.4.0-1_all.deb ... 577s Unpacking r-cran-scales (1.4.0-1) ... 577s Selecting previously unselected package r-cran-magrittr. 577s Preparing to unpack .../142-r-cran-magrittr_2.0.3-1_arm64.deb ... 577s Unpacking r-cran-magrittr (2.0.3-1) ... 577s Selecting previously unselected package r-cran-utf8. 577s Preparing to unpack .../143-r-cran-utf8_1.2.4-1_arm64.deb ... 577s Unpacking r-cran-utf8 (1.2.4-1) ... 577s Selecting previously unselected package r-cran-vctrs. 577s Preparing to unpack .../144-r-cran-vctrs_0.6.5-1_arm64.deb ... 577s Unpacking r-cran-vctrs (0.6.5-1) ... 577s Selecting previously unselected package r-cran-pillar. 577s Preparing to unpack .../145-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 577s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 577s Selecting previously unselected package r-cran-pkgconfig. 577s Preparing to unpack .../146-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 577s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 577s Selecting previously unselected package r-cran-tibble. 577s Preparing to unpack .../147-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 577s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 577s Selecting previously unselected package r-cran-withr. 577s 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autopkgtest [23:48:56]: test run-unit-test: [----------------------- 584s BEGIN TEST allier.R 584s 584s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 584s Copyright (C) 2025 The R Foundation for Statistical Computing 584s Platform: aarch64-unknown-linux-gnu 584s 584s R is free software and comes with ABSOLUTELY NO WARRANTY. 584s You are welcome to redistribute it under certain conditions. 584s Type 'license()' or 'licence()' for distribution details. 584s 584s R is a collaborative project with many contributors. 584s Type 'contributors()' for more information and 584s 'citation()' on how to cite R or R packages in publications. 584s 584s Type 'demo()' for some demos, 'help()' for on-line help, or 584s 'help.start()' for an HTML browser interface to help. 584s Type 'q()' to quit R. 584s 584s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 584s > library(sp) 584s > library(gstat) 584s > 584s > # some data 584s > x <- c(215, 330, 410, 470, 545) 584s > y <- c(230, 310, 330, 340, 365) 584s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 584s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 584s > Allier <- data.frame(x, y, fc, por) 584s > coordinates(Allier) = ~x+y 584s > 584s > # gstat object for co-kriging using linear model of co-regionalization 584s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 584s + model=vgm(0.00247, "Sph", 480, 0.00166)) 584s > g <- gstat(g, id="por", formula=por~1, data=Allier, 584s + model=vgm(0.00239, "Sph", 480, 0.00118)) 584s > g <- gstat(g, id=c("fc", "por"), 584s + model=vgm(0.00151, "Sph", 480, -0.00124)) 584s > 584s > # predict at single point 584s > g$set = list(choleski = 0) # LDL' 584s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 584s Linear Model of Coregionalization found. Good. 584s [using ordinary cokriging] 584s we're at location X: 450 Y: 350 Z: 0 584s zero block size 584s we're at point X: 450 Y: 350 Z: 0 584s 584s # X: 584s #Matrix: 10 by 2 584s rbind( 584s c( 1.000000, 0.000000), # row 1 584s c( 1.000000, 0.000000), # row 2 584s c( 1.000000, 0.000000), # row 3 584s c( 1.000000, 0.000000), # row 4 584s c( 1.000000, 0.000000), # row 5 584s c( 0.000000, 1.000000), # row 6 584s c( 0.000000, 1.000000), # row 7 584s c( 0.000000, 1.000000), # row 8 584s c( 0.000000, 1.000000), # row 9 584s c( 0.000000, 1.000000) # row 10 584s ) 584s [using generalized covariances: max_val - semivariance()] 584s # Covariances (x_i, x_j) matrix C (upper triangle): 584s #Matrix: 10 by 10 584s rbind( 584s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 584s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 584s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 584s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 584s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 584s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 584s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 584s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 584s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 584s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 584s ) 584s 584s # glm->C, LDL' decomposed:: 584s #Matrix: 10 by 10 584s rbind( 584s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 584s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 584s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 584s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 584s ) 584s 584s # X'C-1 X: 584s #Matrix: 2 by 2 584s rbind( 584s c(665.433994, -232.313340), # row 1 584s c(-232.313340, 729.440848) # row 2 584s ) 584s 584s # beta: 584s #Vector: dim: 2 584s c( 0.244216, 0.440933) 584s # Cov(beta), (X'C-1 X)-1: 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.001691, 0.000538), # row 1 584s c( 0.000538, 0.001542) # row 2 584s ) 584s 584s # Corr(beta): 584s #Matrix: 2 by 2 584s rbind( 584s c( 1.000000, 0.333447), # row 1 584s c( 0.333447, 1.000000) # row 2 584s ) 584s 584s # X0 (X values at prediction location x0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 1.000000, 0.000000), # row 1 584s c( 0.000000, 1.000000) # row 2 584s ) 584s 584s # BLUE(mu), E(y(x0)) = X0'beta: 584s #Vector: dim: 2 584s c( 0.244216, 0.440933) 584s # Covariances (x_i, x_0), C0: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.000638, 0.000390), # row 1 584s c( 0.001516, 0.000927), # row 2 584s c( 0.002126, 0.001300), # row 3 584s c( 0.002298, 0.001405), # row 4 584s c( 0.001738, 0.001062), # row 5 584s c( 0.000390, 0.000618), # row 6 584s c( 0.000927, 0.001467), # row 7 584s c( 0.001300, 0.002057), # row 8 584s c( 0.001405, 0.002223), # row 9 584s c( 0.001062, 0.001681) # row 10 584s ) 584s 584s # C-1 C0: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.008927, -0.017995), # row 1 584s c( 0.061935, -0.028550), # row 2 584s c( 0.225195, 0.078344), # row 3 584s c( 0.356735, 0.190177), # row 4 584s c( 0.094128, -0.023136), # row 5 584s c(-0.021119, 0.004935), # row 6 584s c(-0.033508, 0.055601), # row 7 584s c( 0.091947, 0.242576), # row 8 584s c( 0.223200, 0.398927), # row 9 584s c(-0.027153, 0.088995) # row 10 584s ) 584s 584s # [a] Cov_ij(B,B) or Cov_ij(0,0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.004130, 0.000270), # row 1 584s c( 0.000270, 0.003570) # row 2 584s ) 584s 584s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.000129, -0.000107), # row 1 584s c(-0.000107, 0.000089) # row 2 584s ) 584s 584s # [b] c0'C-1 c0: 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.001926, 0.001532), # row 1 584s c( 0.001532, 0.001931) # row 2 584s ) 584s 584s # Best Linear Unbiased Predictor: 584s #Vector: dim: 2 584s c( 0.253090, 0.441258) 584s # MSPE ([a]-[b]+[c]): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.002332, -0.001369), # row 1 584s c(-0.001369, 0.001729) # row 2 584s ) 584s 584s # kriging weights: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.071177, -0.064988), # row 1 584s c( 0.108451, -0.066123), # row 2 584s c( 0.268160, 0.043141), # row 3 584s c( 0.401959, 0.153312), # row 4 584s c( 0.150253, -0.065342), # row 5 584s c(-0.076273, 0.056759), # row 6 584s c(-0.077605, 0.093781), # row 7 584s c( 0.050632, 0.277731), # row 8 584s c( 0.179933, 0.435972), # row 9 584s c(-0.076688, 0.135756) # row 10 584s ) 584s 584s 584s > g$set = list(choleski = 1) # Choleski 584s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 584s Linear Model of Coregionalization found. Good. 584s [using ordinary cokriging] 584s we're at location X: 450 Y: 350 Z: 0 584s zero block size 584s we're at point X: 450 Y: 350 Z: 0 584s 584s # X: 584s #Matrix: 10 by 2 584s rbind( 584s c( 1.000000, 0.000000), # row 1 584s c( 1.000000, 0.000000), # row 2 584s c( 1.000000, 0.000000), # row 3 584s c( 1.000000, 0.000000), # row 4 584s c( 1.000000, 0.000000), # row 5 584s c( 0.000000, 1.000000), # row 6 584s c( 0.000000, 1.000000), # row 7 584s c( 0.000000, 1.000000), # row 8 584s c( 0.000000, 1.000000), # row 9 584s c( 0.000000, 1.000000) # row 10 584s ) 584s [using generalized covariances: max_val - semivariance()] 584s # Covariances (x_i, x_j) matrix C (upper triangle): 584s #Matrix: 10 by 10 584s rbind( 584s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 584s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 584s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 584s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 584s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 584s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 584s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 584s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 584s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 584s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 584s ) 584s 584s # glm->C, Choleski decomposed:: 584s #Matrix: 10 by 10 584s rbind( 584s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 584s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 584s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 584s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 584s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 584s ) 584s 584s # X'C-1 X: 584s #Matrix: 2 by 2 584s rbind( 584s c(665.433994, -232.313340), # row 1 584s c(-232.313340, 729.440848) # row 2 584s ) 584s 584s # beta: 584s #Vector: dim: 2 584s c( 0.244216, 0.440933) 584s # Cov(beta), (X'C-1 X)-1: 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.001691, 0.000538), # row 1 584s c( 0.000538, 0.001542) # row 2 584s ) 584s 584s # Corr(beta): 584s #Matrix: 2 by 2 584s rbind( 584s c( 1.000000, 0.333447), # row 1 584s c( 0.333447, 1.000000) # row 2 584s ) 584s 584s # X0 (X values at prediction location x0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 1.000000, 0.000000), # row 1 584s c( 0.000000, 1.000000) # row 2 584s ) 584s 584s # BLUE(mu), E(y(x0)) = X0'beta: 584s #Vector: dim: 2 584s c( 0.244216, 0.440933) 584s # Covariances (x_i, x_0), C0: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.000638, 0.000390), # row 1 584s c( 0.001516, 0.000927), # row 2 584s c( 0.002126, 0.001300), # row 3 584s c( 0.002298, 0.001405), # row 4 584s c( 0.001738, 0.001062), # row 5 584s c( 0.000390, 0.000618), # row 6 584s c( 0.000927, 0.001467), # row 7 584s c( 0.001300, 0.002057), # row 8 584s c( 0.001405, 0.002223), # row 9 584s c( 0.001062, 0.001681) # row 10 584s ) 584s 584s # C-1 C0: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.008927, -0.017995), # row 1 584s c( 0.061935, -0.028550), # row 2 584s c( 0.225195, 0.078344), # row 3 584s c( 0.356735, 0.190177), # row 4 584s c( 0.094128, -0.023136), # row 5 584s c(-0.021119, 0.004935), # row 6 584s c(-0.033508, 0.055601), # row 7 584s c( 0.091947, 0.242576), # row 8 584s c( 0.223200, 0.398927), # row 9 584s c(-0.027153, 0.088995) # row 10 584s ) 584s 584s # [a] Cov_ij(B,B) or Cov_ij(0,0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.004130, 0.000270), # row 1 584s c( 0.000270, 0.003570) # row 2 584s ) 584s 584s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.000129, -0.000107), # row 1 584s c(-0.000107, 0.000089) # row 2 584s ) 584s 584s # [b] c0'C-1 c0: 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.001926, 0.001532), # row 1 584s c( 0.001532, 0.001931) # row 2 584s ) 584s 584s # Best Linear Unbiased Predictor: 584s #Vector: dim: 2 584s c( 0.253090, 0.441258) 584s # MSPE ([a]-[b]+[c]): 584s #Matrix: 2 by 2 584s rbind( 584s c( 0.002332, -0.001369), # row 1 584s c(-0.001369, 0.001729) # row 2 584s ) 584s 584s # kriging weights: 584s #Matrix: 10 by 2 584s rbind( 584s c( 0.071177, -0.064988), # row 1 584s c( 0.108451, -0.066123), # row 2 584s c( 0.268160, 0.043141), # row 3 584s c( 0.401959, 0.153312), # row 4 584s c( 0.150253, -0.065342), # row 5 584s c(-0.076273, 0.056759), # row 6 584s c(-0.077605, 0.093781), # row 7 584s c( 0.050632, 0.277731), # row 8 584s c( 0.179933, 0.435972), # row 9 584s c(-0.076688, 0.135756) # row 10 584s ) 584s 584s 584s > all.equal(A,B) 584s [1] TRUE 584s > 584s > # TRUE 584s > 584s BEGIN TEST blockkr.R 584s 584s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 584s Copyright (C) 2025 The R Foundation for Statistical Computing 584s Platform: aarch64-unknown-linux-gnu 584s 584s R is free software and comes with ABSOLUTELY NO WARRANTY. 584s You are welcome to redistribute it under certain conditions. 584s Type 'license()' or 'licence()' for distribution details. 584s 584s R is a collaborative project with many contributors. 584s Type 'contributors()' for more information and 584s 'citation()' on how to cite R or R packages in publications. 584s 584s Type 'demo()' for some demos, 'help()' for on-line help, or 584s 'help.start()' for an HTML browser interface to help. 584s Type 'q()' to quit R. 584s 585s > library(sp) 585s > data(meuse) 585s > coordinates(meuse) = c("x", "y") 585s > new.locs <- SpatialPoints(data.frame( 585s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 585s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 585s > library(gstat) 585s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 585s + block = c(40,40), nmax = 40) 585s [using ordinary kriging] 585s coordinates var1.pred var1.var 585s 1 (181170, 333250) 268.7576 19447.67 585s 2 (180310, 332189) 663.4915 16991.33 585s 3 (180205, 331707) 251.4606 21579.71 585s 4 (178673, 330066) 532.5776 73807.91 585s 5 (178770, 330675) 664.4039 23589.17 585s 6 (178270, 331075) 565.5436 155113.23 585s > 585s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 585s > 585s > disc = c(-15,-5,5,15) 585s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 585s > block.irreg 585s x y 585s 1 -15 -15 585s 2 -5 -15 585s 3 5 -15 585s 4 15 -15 585s 5 -15 -5 585s 6 -5 -5 585s 7 5 -5 585s 8 15 -5 585s 9 -15 5 585s 10 -5 5 585s 11 5 5 585s 12 15 5 585s 13 -15 15 585s 14 -5 15 585s 15 5 15 585s 16 15 15 585s > 585s > # first disable default Gaussian quadrature used for block integration, by 585s > # setting nblockdiscr explicitly: 585s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 585s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 585s [using ordinary kriging] 585s coordinates var1.pred var1.var 585s 1 (181170, 333250) 268.7324 19568.76 585s > # now pass the same block discretization as block.irreg: 585s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 585s + block = block.irreg, nmax = 40) 585s [using ordinary kriging] 585s coordinates var1.pred var1.var 585s 1 (181170, 333250) 268.7324 19568.76 585s > # check weights argument: 585s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 585s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 585s + block = block.irreg, nmax = 40) 585s [using ordinary kriging] 585s coordinates var1.pred var1.var 585s 1 (181170, 333250) 268.7324 19568.76 585s > 585s BEGIN TEST covtable.R 585s 585s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 585s Copyright (C) 2025 The R Foundation for Statistical Computing 585s Platform: aarch64-unknown-linux-gnu 585s 585s R is free software and comes with ABSOLUTELY NO WARRANTY. 585s You are welcome to redistribute it under certain conditions. 585s Type 'license()' or 'licence()' for distribution details. 585s 585s R is a collaborative project with many contributors. 585s Type 'contributors()' for more information and 585s 'citation()' on how to cite R or R packages in publications. 585s 585s Type 'demo()' for some demos, 'help()' for on-line help, or 585s 'help.start()' for an HTML browser interface to help. 585s Type 'q()' to quit R. 585s 585s > library(gstat) 586s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 586s > d$z=1:4 586s > vv=vgm(model = "Tab", covtable = 586s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 586s > vv 586s model psill maxdist 586s 1 Tab NA 1 586s covariance table: 586s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 586s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 586s [using ordinary kriging] 586s x y var1.pred var1.var 586s 1 0 0 2.5 1.017767 586s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 586s [using ordinary kriging] 586s x y var1.pred var1.var 586s 1 0 0 2.5 1.017863 586s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 586s [using ordinary kriging] 586s x y var1.pred var1.var 586s 1 0 0 1.5 1.267767 586s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 586s [using ordinary kriging] 586s x y var1.pred var1.var 586s 1 0 0 1.5 1.267863 586s > 586s BEGIN TEST cv.R 586s 586s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 586s Copyright (C) 2025 The R Foundation for Statistical Computing 586s Platform: aarch64-unknown-linux-gnu 586s 586s R is free software and comes with ABSOLUTELY NO WARRANTY. 586s You are welcome to redistribute it under certain conditions. 586s Type 'license()' or 'licence()' for distribution details. 586s 586s R is a collaborative project with many contributors. 586s Type 'contributors()' for more information and 586s 'citation()' on how to cite R or R packages in publications. 586s 586s Type 'demo()' for some demos, 'help()' for on-line help, or 586s 'help.start()' for an HTML browser interface to help. 586s Type 'q()' to quit R. 586s 586s > # try bivariate cokriging; cross validate first variable 586s > library(sp) 586s > data(meuse) 586s > library(gstat) 587s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 587s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 587s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 587s > v=variogram(g) 587s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 587s > g=fit.lmc(v, g) 587s > g 587s data: 587s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 587s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 587s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 587s variograms: 587s model psill range 587s log-zinc Sph 0.7132435 1000 587s log-lead Sph 0.6133020 1000 587s log-copper Sph 0.3634211 1000 587s log-zinc.log-lead Sph 0.6367012 1000 587s log-zinc.log-copper Sph 0.4570044 1000 587s log-lead.log-copper Sph 0.3934910 1000 587s ~x + y 587s > set.seed(13131) 587s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s log.zinc.pred log.zinc.var observed residual 587s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 587s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 587s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 587s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 587s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 587s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 587s zscore fold x y 587s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 587s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 587s Median :-0.10755 Median :3.000 Median :179991 Median :331633 587s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 587s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 587s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 587s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 587s Warning message: 587s In checkNames(value) : 587s attempt to set invalid names: this may lead to problems later on. See ?make.names 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Intrinsic Correlation found. Good. 587s [using ordinary cokriging] 587s Warning message: 587s In checkNames(value) : 587s attempt to set invalid names: this may lead to problems later on. See ?make.names 587s log.zinc.pred log.zinc.var observed residual 587s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190976 587s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 587s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 587s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 587s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 587s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 587s zscore fold x y 587s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 587s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 587s Median : 0.007242 Median :3.000 Median :179991 Median :331633 587s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 587s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 587s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 587s > 587s BEGIN TEST cv3d.R 587s 587s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 587s Copyright (C) 2025 The R Foundation for Statistical Computing 587s Platform: aarch64-unknown-linux-gnu 587s 587s R is free software and comes with ABSOLUTELY NO WARRANTY. 587s You are welcome to redistribute it under certain conditions. 587s Type 'license()' or 'licence()' for distribution details. 587s 587s R is a collaborative project with many contributors. 587s Type 'contributors()' for more information and 587s 'citation()' on how to cite R or R packages in publications. 587s 587s Type 'demo()' for some demos, 'help()' for on-line help, or 587s 'help.start()' for an HTML browser interface to help. 587s Type 'q()' to quit R. 587s 587s > options(digits = 4) 587s > set.seed(1131) 587s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 587s > library(gstat) 588s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 588s > summary(xx) 588s var1.pred var1.var observed residual 588s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 588s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 588s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 588s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 588s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.501 3rd Qu.: 0.8508 588s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 588s zscore fold x y 588s Min. :-5.1678 Min. : 1.0 Min. :0.00678 Min. :0.0034 588s 1st Qu.:-1.8749 1st Qu.:13.2 1st Qu.:0.23966 1st Qu.:0.2466 588s Median : 0.2453 Median :25.5 Median :0.48668 Median :0.4525 588s Mean : 0.0167 Mean :25.5 Mean :0.49966 Mean :0.4969 588s 3rd Qu.: 2.0201 3rd Qu.:37.8 3rd Qu.:0.74730 3rd Qu.:0.7394 588s Max. : 7.3541 Max. :50.0 Max. :0.98754 Max. :0.9872 588s z 588s Min. :0.00164 588s 1st Qu.:0.18646 588s Median :0.44850 588s Mean :0.47142 588s 3rd Qu.:0.72403 588s Max. :0.99420 588s > 588s BEGIN TEST fit.R 588s 588s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 588s Copyright (C) 2025 The R Foundation for Statistical Computing 588s Platform: aarch64-unknown-linux-gnu 588s 588s R is free software and comes with ABSOLUTELY NO WARRANTY. 588s You are welcome to redistribute it under certain conditions. 588s Type 'license()' or 'licence()' for distribution details. 588s 588s R is a collaborative project with many contributors. 588s Type 'contributors()' for more information and 588s 'citation()' on how to cite R or R packages in publications. 588s 588s Type 'demo()' for some demos, 'help()' for on-line help, or 588s 'help.start()' for an HTML browser interface to help. 588s Type 'q()' to quit R. 588s 588s > library(sp) 588s > data(meuse) 588s > library(gstat) 589s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 589s > v$gamma=c(0.5,1,2,3,3) 589s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 589s model psill range 589s 1 Nug 0.000000 0.00 589s 2 Sph 7.878195 1567.77 589s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 589s Warning message: 589s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 589s partial sill or nugget fixed at zero value 589s model psill range 589s 1 Nug 0.000000 0.00 589s 2 Sph 7.878195 1567.77 589s > 589s BEGIN TEST krige0.R 589s 589s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 589s Copyright (C) 2025 The R Foundation for Statistical Computing 589s Platform: aarch64-unknown-linux-gnu 589s 589s R is free software and comes with ABSOLUTELY NO WARRANTY. 589s You are welcome to redistribute it under certain conditions. 589s Type 'license()' or 'licence()' for distribution details. 589s 589s R is a collaborative project with many contributors. 589s Type 'contributors()' for more information and 589s 'citation()' on how to cite R or R packages in publications. 589s 589s Type 'demo()' for some demos, 'help()' for on-line help, or 589s 'help.start()' for an HTML browser interface to help. 589s Type 'q()' to quit R. 589s 589s > # test -- load data: 589s > library(sp) 589s > data(meuse) 589s > coordinates(meuse) = ~x+y 589s > data(meuse.grid) 589s > gridded(meuse.grid) = ~x+y 589s > 589s > library(gstat) 590s > # test -- idw 590s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 590s > x <- idw(zinc~1, meuse, meuse.grid) 590s [inverse distance weighted interpolation] 590s > all.equal(x$var1.pred, meuse.grid$idw) 590s [1] TRUE 590s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 590s > v = vgm(1, "Exp", 500) 590s > # test sk: 590s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 590s > rownames(x0$pred)=NULL 590s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 590s [using simple kriging] 590s > all.equal(x$var1.pred, x0$pred[,1]) 590s [1] TRUE 590s > all.equal(x$var1.var, x0$var) 590s [1] TRUE 590s > # test ok: 590s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 590s > rownames(x0$pred)=NULL 590s > names(x0$var)=NULL 590s > x <- krige(zinc~1, meuse, meuse.grid, v) 590s [using ordinary kriging] 590s > all.equal(x$var1.pred, x0$pred[,1]) 590s [1] TRUE 590s > all.equal(x$var1.var, x0$var) 590s [1] TRUE 590s > # test uk: 590s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 591s > rownames(x0$pred)=NULL 591s > names(x0$var)=NULL 591s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 591s [using universal kriging] 591s > all.equal(x$var1.pred, x0$pred[,1]) 591s [1] TRUE 591s > all.equal(x$var1.var, x0$var) 591s [1] TRUE 591s > 591s BEGIN TEST line.R 591s 591s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 591s Copyright (C) 2025 The R Foundation for Statistical Computing 591s Platform: aarch64-unknown-linux-gnu 591s 591s R is free software and comes with ABSOLUTELY NO WARRANTY. 591s You are welcome to redistribute it under certain conditions. 591s Type 'license()' or 'licence()' for distribution details. 591s 591s R is a collaborative project with many contributors. 591s Type 'contributors()' for more information and 591s 'citation()' on how to cite R or R packages in publications. 591s 591s Type 'demo()' for some demos, 'help()' for on-line help, or 591s 'help.start()' for an HTML browser interface to help. 591s Type 'q()' to quit R. 591s 591s > options(digits=5) 591s > library(sp) 591s > data(meuse.grid) 591s > gridded(meuse.grid) = ~x+y 591s > data(meuse) 591s > coordinates(meuse) = ~x+y 591s > 591s > # choose arbitrary line over the grid: 591s > image(meuse.grid["dist"],axes=T) 591s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 591s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 591s > plot(Sl,add=T,col='green') 591s > 591s > # use the default spsample arguments of predict.gstat: 591s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 591s > plot(pts, pch=3, cex=.2, add=T) 591s > 591s > library(gstat) 592s > v = vgm(.6, "Sph", 900, .06) 592s > out1 = krige(log(zinc)~1, meuse, Sl, v) 592s [using ordinary kriging] 592s > out1 592s An object of class "SpatialLinesDataFrame" 592s Slot "data": 592s x y var1.pred var1.var 592s a 180333 332167 6.1618 0.008025 592s 592s Slot "lines": 592s [[1]] 592s An object of class "Lines" 592s Slot "Lines": 592s [[1]] 592s An object of class "Line" 592s Slot "coords": 592s [,1] [,2] 592s [1,] 180000 331000 592s [2,] 180000 332000 592s [3,] 181000 333500 592s 592s 592s 592s Slot "ID": 592s [1] "a" 592s 592s 592s 592s Slot "bbox": 592s min max 592s x 180000 181000 592s y 331000 333500 592s 592s Slot "proj4string": 592s Coordinate Reference System: 592s Deprecated Proj.4 representation: NA 592s 592s > 592s > points(180333,332167,pch=3,cex=2) 592s > 592s > # use the same line as block discretization, and predict for (0,0) 592s > # (because the block discretizing points are not centered) 592s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 592s [using ordinary kriging] 592s > out2 592s coordinates var1.pred var1.var 592s 1 (0, 0) 6.1618 0.008025 592s > 592s > compare.krigingLines = function(formula, data, newdata, model) { 592s + out1 = krige(formula, data, newdata, model) 592s + pts = spsample(newdata, n=500, 'regular', offset=.5) 592s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 592s + print("difference:") 592s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 592s + } 592s > 592s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 592s [using ordinary kriging] 592s [using ordinary kriging] 592s [1] "difference:" 592s var1.pred var1.var 592s a 0 0 592s > 592s > # one line, consisting of two line segments: 592s > pp2 = rbind(c(181000,333500),c(181000,332500)) 592s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 592s > krige(log(zinc)~1, meuse, Sl2, v) 592s [using ordinary kriging] 592s An object of class "SpatialLinesDataFrame" 592s Slot "data": 592s x y var1.pred var1.var 592s a 180667 332583 6.0424 0.0053191 592s 592s Slot "lines": 592s [[1]] 592s An object of class "Lines" 592s Slot "Lines": 592s [[1]] 592s An object of class "Line" 592s Slot "coords": 592s [,1] [,2] 592s [1,] 180000 331000 592s [2,] 180000 332000 592s [3,] 181000 333500 592s 592s 592s [[2]] 592s An object of class "Line" 592s Slot "coords": 592s [,1] [,2] 592s [1,] 181000 333500 592s [2,] 181000 332500 592s 592s 592s 592s Slot "ID": 592s [1] "a" 592s 592s 592s 592s Slot "bbox": 592s min max 592s x 180000 181000 592s y 331000 333500 592s 592s Slot "proj4string": 592s Coordinate Reference System: 592s Deprecated Proj.4 representation: NA 592s 592s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 592s [using ordinary kriging] 592s [using ordinary kriging] 592s [1] "difference:" 592s var1.pred var1.var 592s a 0 0 592s > 592s > # two seperate line segments: 592s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 592s > krige(log(zinc)~1, meuse, Sl3, v) 592s [using ordinary kriging] 592s An object of class "SpatialLinesDataFrame" 592s Slot "data": 592s x y var1.pred var1.var 592s a 180333 332167 6.1618 0.008025 592s b 181000 333000 5.7060 0.011043 592s 592s Slot "lines": 592s [[1]] 592s An object of class "Lines" 592s Slot "Lines": 592s [[1]] 592s An object of class "Line" 592s Slot "coords": 592s [,1] [,2] 592s [1,] 180000 331000 592s [2,] 180000 332000 592s [3,] 181000 333500 592s 592s 592s 592s Slot "ID": 592s [1] "a" 592s 592s 592s [[2]] 592s An object of class "Lines" 592s Slot "Lines": 592s [[1]] 592s An object of class "Line" 592s Slot "coords": 592s [,1] [,2] 592s [1,] 181000 333500 592s [2,] 181000 332500 592s 592s 592s 592s Slot "ID": 592s [1] "b" 592s 592s 592s 592s Slot "bbox": 592s min max 592s x 180000 181000 592s y 331000 333500 592s 592s Slot "proj4string": 592s Coordinate Reference System: 592s Deprecated Proj.4 representation: NA 592s 592s > 592s BEGIN TEST merge.R 592s 592s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 592s Copyright (C) 2025 The R Foundation for Statistical Computing 592s Platform: aarch64-unknown-linux-gnu 592s 592s R is free software and comes with ABSOLUTELY NO WARRANTY. 592s You are welcome to redistribute it under certain conditions. 592s Type 'license()' or 'licence()' for distribution details. 592s 592s R is a collaborative project with many contributors. 592s Type 'contributors()' for more information and 592s 'citation()' on how to cite R or R packages in publications. 592s 592s Type 'demo()' for some demos, 'help()' for on-line help, or 592s 'help.start()' for an HTML browser interface to help. 592s Type 'q()' to quit R. 592s 592s > options(digits=6) 592s > # illustrates the use of merge, for merging parameters accross variables: 592s > # Z1=m+e1(s) 592s > # Z2=m+e2(s) 592s > # Z1 and Z2 each have a different variogram, but share the parameter m 592s > # see documentation of gstat() function 592s > library(gstat) 592s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 592s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 592s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 592s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 593s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 593s > predict(g, data.frame(x=1,y=1), debug = 32) 593s Intrinsic Correlation found. Good. 593s [using ordinary cokriging] 593s we're at location X: 1 Y: 1 Z: 0 593s zero block size 593s we're at point X: 1 Y: 1 Z: 0 593s 593s # X: 593s #Matrix: 4 by 1 593s rbind( 593s c( 1.000000), # row 1 593s c( 1.000000), # row 2 593s c( 1.000000), # row 3 593s c( 1.000000) # row 4 593s ) 593s [using generalized covariances: max_val - semivariance()] 593s # Covariances (x_i, x_j) matrix C (upper triangle): 593s #Matrix: 4 by 4 593s rbind( 593s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 593s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 593s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 593s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 593s ) 593s 593s # glm->C, Choleski decomposed:: 593s #Matrix: 4 by 4 593s rbind( 593s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 593s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 593s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 593s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 593s ) 593s 593s # X'C-1 X: 593s #Matrix: 1 by 1 593s rbind( 593s c( 3.245289) # row 1 593s ) 593s 593s # beta: 593s #Vector: dim: 1 593s c( 2.500000) 593s # Cov(beta), (X'C-1 X)-1: 593s #Matrix: 1 by 1 593s rbind( 593s c( 0.308139) # row 1 593s ) 593s 593s # Corr(beta): 593s #Matrix: 1 by 1 593s rbind( 593s c( 1.000000) # row 1 593s ) 593s 593s # X0 (X values at prediction location x0): 593s #Matrix: 1 by 2 593s rbind( 593s c( 1.000000, 1.000000) # row 1 593s ) 593s 593s # BLUE(mu), E(y(x0)) = X0'beta: 593s #Vector: dim: 2 593s c( 2.500000, 2.500000) 593s # Covariances (x_i, x_0), C0: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.243117, 0.121558), # row 1 593s c( 0.243117, 0.121558), # row 2 593s c( 0.121558, 0.243117), # row 3 593s c( 0.121558, 0.243117) # row 4 593s ) 593s 593s # C-1 C0: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.206482, 0.089387), # row 1 593s c( 0.206482, 0.089387), # row 2 593s c( 0.089387, 0.206482), # row 3 593s c( 0.089387, 0.206482) # row 4 593s ) 593s 593s # [a] Cov_ij(B,B) or Cov_ij(0,0): 593s #Matrix: 2 by 2 593s rbind( 593s c( 1.000000, 0.500000), # row 1 593s c( 0.500000, 1.000000) # row 2 593s ) 593s 593s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 593s #Matrix: 2 by 2 593s rbind( 593s c( 0.051360, 0.051360), # row 1 593s c( 0.051360, 0.051360) # row 2 593s ) 593s 593s # [b] c0'C-1 c0: 593s #Matrix: 2 by 2 593s rbind( 593s c( 0.122130, 0.093662), # row 1 593s c( 0.093662, 0.122130) # row 2 593s ) 593s 593s # Best Linear Unbiased Predictor: 593s #Vector: dim: 2 593s c( 2.031619, 2.968381) 593s # MSPE ([a]-[b]+[c]): 593s #Matrix: 2 by 2 593s rbind( 593s c( 0.929230, 0.457698), # row 1 593s c( 0.457698, 0.929230) # row 2 593s ) 593s 593s # kriging weights: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.308548, 0.191452), # row 1 593s c( 0.308548, 0.191452), # row 2 593s c( 0.191452, 0.308548), # row 3 593s c( 0.191452, 0.308548) # row 4 593s ) 593s 593s 593s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 593s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 593s > 593s > # Z1 and Z2 share a regression slope: 593s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 593s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 593s + merge=list(c("d1",2,"d2",2))) 593s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 593s > predict(g, data.frame(x=1,y=1), debug = 32) 593s Intrinsic Correlation found. Good. 593s [using universal cokriging] 593s we're at location X: 1 Y: 1 Z: 0 593s zero block size 593s we're at point X: 1 Y: 1 Z: 0 593s 593s # X: 593s #Matrix: 4 by 3 593s rbind( 593s c( 1.000000, 0.000000, 0.000000), # row 1 593s c( 1.000000, 2.000000, 0.000000), # row 2 593s c( 0.000000, 0.000000, 1.000000), # row 3 593s c( 0.000000, 2.000000, 1.000000) # row 4 593s ) 593s [using generalized covariances: max_val - semivariance()] 593s # Covariances (x_i, x_j) matrix C (upper triangle): 593s #Matrix: 4 by 4 593s rbind( 593s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 593s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 593s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 593s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 593s ) 593s 593s # glm->C, Choleski decomposed:: 593s #Matrix: 4 by 4 593s rbind( 593s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 593s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 593s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 593s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 593s ) 593s 593s # X'C-1 X: 593s #Matrix: 3 by 3 593s rbind( 593s c( 1.774607, 1.622645, -0.151962), # row 1 593s c( 1.622645, 7.676050, 1.622645), # row 2 593s c(-0.151962, 1.622645, 1.774607) # row 3 593s ) 593s 593s # beta: 593s #Vector: dim: 3 593s c( 0.000000, 0.500000, 4.000000) 593s # Cov(beta), (X'C-1 X)-1: 593s #Matrix: 3 by 3 593s rbind( 593s c( 0.793363, -0.225695, 0.274305), # row 1 593s c(-0.225695, 0.225695, -0.225695), # row 2 593s c( 0.274305, -0.225695, 0.793363) # row 3 593s ) 593s 593s # Corr(beta): 593s #Matrix: 3 by 3 593s rbind( 593s c( 1.000000, -0.533366, 0.345750), # row 1 593s c(-0.533366, 1.000000, -0.533366), # row 2 593s c( 0.345750, -0.533366, 1.000000) # row 3 593s ) 593s 593s # X0 (X values at prediction location x0): 593s #Matrix: 3 by 2 593s rbind( 593s c( 1.000000, 0.000000), # row 1 593s c( 1.000000, 1.000000), # row 2 593s c( 0.000000, 1.000000) # row 3 593s ) 593s 593s # BLUE(mu), E(y(x0)) = X0'beta: 593s #Vector: dim: 2 593s c( 0.500000, 4.500000) 593s # Covariances (x_i, x_0), C0: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.243117, 0.121558), # row 1 593s c( 0.243117, 0.121558), # row 2 593s c( 0.121558, 0.243117), # row 3 593s c( 0.121558, 0.243117) # row 4 593s ) 593s 593s # C-1 C0: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.206482, 0.089387), # row 1 593s c( 0.206482, 0.089387), # row 2 593s c( 0.089387, 0.206482), # row 3 593s c( 0.089387, 0.206482) # row 4 593s ) 593s 593s # [a] Cov_ij(B,B) or Cov_ij(0,0): 593s #Matrix: 2 by 2 593s rbind( 593s c( 1.000000, 0.500000), # row 1 593s c( 0.500000, 1.000000) # row 2 593s ) 593s 593s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 593s #Matrix: 2 by 2 593s rbind( 593s c( 0.203564, -0.100844), # row 1 593s c(-0.100844, 0.203564) # row 2 593s ) 593s 593s # [b] c0'C-1 c0: 593s #Matrix: 2 by 2 593s rbind( 593s c( 0.122130, 0.093662), # row 1 593s c( 0.093662, 0.122130) # row 2 593s ) 593s 593s # Best Linear Unbiased Predictor: 593s #Vector: dim: 2 593s c( 0.500000, 4.500000) 593s # MSPE ([a]-[b]+[c]): 593s #Matrix: 2 by 2 593s rbind( 593s c( 1.081434, 0.305494), # row 1 593s c( 0.305494, 1.081434) # row 2 593s ) 593s 593s # kriging weights: 593s #Matrix: 4 by 2 593s rbind( 593s c( 0.500000, 0.000000), # row 1 593s c( 0.500000, 0.000000), # row 2 593s c( 0.000000, 0.500000), # row 3 593s c( 0.000000, 0.500000) # row 4 593s ) 593s 593s 593s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 593s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 593s > 593s BEGIN TEST na.action.R 593s 593s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 593s Copyright (C) 2025 The R Foundation for Statistical Computing 593s Platform: aarch64-unknown-linux-gnu 593s 593s R is free software and comes with ABSOLUTELY NO WARRANTY. 593s You are welcome to redistribute it under certain conditions. 593s Type 'license()' or 'licence()' for distribution details. 593s 593s R is a collaborative project with many contributors. 593s Type 'contributors()' for more information and 593s 'citation()' on how to cite R or R packages in publications. 593s 593s Type 'demo()' for some demos, 'help()' for on-line help, or 593s 'help.start()' for an HTML browser interface to help. 593s Type 'q()' to quit R. 593s 593s > library(sp) 593s > 593s > data(meuse) 593s > data(meuse.grid) 593s > 593s > set.seed(13131) # reproduce results 593s > 593s > # select 10 random rows; 593s > # create two missing values in the coordinates: 593s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 593s > m[c(2,8), "x"] = NA 593s > 593s > library(gstat) 593s > ## this is not allowed anymore: 593s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 593s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 593s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 593s missing values in object 593s > Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 593s missing values in object 593s try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 593s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 593s missing values in object 593s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 593s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 593s missing values in object 593s > 593s > # select 10 random rows; 593s > # create two missing values in the regressor variable: 593s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 593s > m[c(3,7), "dist"] = NA 593s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 593s [ordinary or weighted least squares prediction] 593s x y var1.pred var1.var 593s 1 178860 330860 6.530134 0.2415196 593s 2 180260 331860 5.389567 0.2406041 593s 3 180100 331860 NA NA 593s 4 180460 331820 5.213370 0.2417197 593s 5 179660 330580 5.550859 0.2398778 593s 6 179740 330300 6.108648 0.2395392 593s 7 180220 330660 NA NA 593s 8 178580 329820 6.533801 0.2415453 593s 9 180100 331900 5.580264 0.2397758 593s 10 180780 331900 5.095967 0.2426499 593s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 593s [ordinary or weighted least squares prediction] 593s x y var1.pred var1.var 593s 1877 178860 330860 6.530134 0.2415196 593s 1015 180260 331860 5.389567 0.2406041 593s 1056 180460 331820 5.213370 0.2417197 593s 2199 179660 330580 5.550859 0.2398778 593s 2556 179740 330300 6.108648 0.2395392 593s 2985 178580 329820 6.533801 0.2415453 593s 975 180100 331900 5.580264 0.2397758 593s 992 180780 331900 5.095967 0.2426499 593s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 593s [ordinary or weighted least squares prediction] 593s x y var1.pred var1.var 593s 1877 178860 330860 6.530134 0.2415196 593s 1015 180260 331860 5.389567 0.2406041 593s 1056 180460 331820 5.213370 0.2417197 593s 2199 179660 330580 5.550859 0.2398778 593s 2556 179740 330300 6.108648 0.2395392 593s 2985 178580 329820 6.533801 0.2415453 593s 975 180100 331900 5.580264 0.2397758 593s 992 180780 331900 5.095967 0.2426499 593s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 593s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 593s missing values in object 593s > 593s BEGIN TEST rings.R 593s 593s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 593s Copyright (C) 2025 The R Foundation for Statistical Computing 593s Platform: aarch64-unknown-linux-gnu 593s 593s R is free software and comes with ABSOLUTELY NO WARRANTY. 593s You are welcome to redistribute it under certain conditions. 593s Type 'license()' or 'licence()' for distribution details. 593s 593s R is a collaborative project with many contributors. 593s Type 'contributors()' for more information and 593s 'citation()' on how to cite R or R packages in publications. 593s 593s Type 'demo()' for some demos, 'help()' for on-line help, or 593s 'help.start()' for an HTML browser interface to help. 593s Type 'q()' to quit R. 593s 594s > library(sp) 594s > library(gstat) 594s > set.seed(13331) 594s > 594s > x = runif(10) 594s > y = runif(10) 594s > z = rnorm(10) 594s > d = data.frame(x=x,y=y,z=z) 594s > bl = c(1,1) 594s > 594s > nd = data.frame(x=.5, y=.5) 594s > 594s > # single block: 594s > library(sp) 594s > coordinates(d) = ~x+y 594s > nd = SpatialPoints(nd) 594s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 594s + set = list(nb=4)) 594s [using ordinary kriging] 594s > 594s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 594s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 594s > a = data.frame(a = 1, b = 2) 594s > rownames(a) = "xx" 594s > r1df = SpatialPolygonsDataFrame(r1, a) 594s > 594s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 594s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 594s > yy = predict(g, r1df, block = bl, sps.args = args) 594s [using ordinary kriging] 594s > 594s > xx = as.data.frame(xx) 594s > yy = as.data.frame(yy) 594s > row.names(xx) = row.names(yy) 594s > print(all.equal(xx,yy)) 594s [1] TRUE 594s > 594s > ## multiple blocks of equal size: 594s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 594s > nd = SpatialPoints(nd) 594s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 594s + set = list(nb=4)) 594s [using ordinary kriging] 594s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 594s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 594s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 594s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 594s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 594s > r1 = SpatialPolygons(list( 594s + Polygons(list(Polygon(ring0)), ID = "x0"), 594s + Polygons(list(Polygon(ring1)), ID = "x1"), 594s + Polygons(list(Polygon(ring2)), ID = "x2"), 594s + Polygons(list(Polygon(ring3)), ID = "x3"), 594s + Polygons(list(Polygon(ring4)), ID = "x4") 594s + )) 594s > df = data.frame(a=rep(1,5), b= rep(1,5)) 594s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 594s > r1df = SpatialPolygonsDataFrame(r1, df) 594s > 594s > yy = predict(g, r1, block = bl, sps.args = args) 594s [using ordinary kriging] 594s > xx = as.data.frame(xx) 594s > yy = as.data.frame(yy) 594s > row.names(xx) = row.names(yy) 594s > all.equal(xx, yy) 594s [1] TRUE 594s > 594s > ## multiple blocks of equal size: 594s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 594s > yy = predict(g, r1, block = bl, sps.args = args) 594s [using ordinary kriging] 594s > xx = as.data.frame(xx) 594s > yy = as.data.frame(yy) 594s > row.names(xx) = row.names(yy) 594s > print(all.equal(xx, yy)) 594s [1] TRUE 594s > 594s > ## multiple blocks of varying size: 594s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 594s > nd = SpatialPoints(nd) 594s > bl = c(1,1) 594s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 594s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 594s + set = list(nb=4)) 594s [using ordinary kriging] 594s > bl = c(2,2) 594s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 594s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 594s + set = list(nb=4)) 594s [using ordinary kriging] 594s > bl = c(3,3) 594s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 594s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 594s + set = list(nb=4)) 594s [using ordinary kriging] 594s > r1 = SpatialPolygons(list( 594s + Polygons(list(Polygon(ring0)), ID = "x0"), 594s + Polygons(list(Polygon(ring1)), ID = "x1"), 594s + Polygons(list(Polygon(ring2)), ID = "x2") 594s + )) 594s > df = data.frame(a = rep(1,3), b = rep(1,3)) 594s > rownames(df) = c("x0", "x1", "x2") 594s > r1df = SpatialPolygonsDataFrame(r1, df) 594s > 594s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 594s > yy = predict(g, r1df, block = bl, sps.args = args) 594s [using ordinary kriging] 594s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 594s > row.names(xx) = 1:3 594s > xx = as.data.frame(xx) 594s > yy = as.data.frame(yy) 594s > row.names(xx) = row.names(yy) 594s > print(all.equal(xx, yy)) 594s [1] TRUE 594s > 594s BEGIN TEST sim.R 594s 594s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 594s Copyright (C) 2025 The R Foundation for Statistical Computing 594s Platform: aarch64-unknown-linux-gnu 594s 594s R is free software and comes with ABSOLUTELY NO WARRANTY. 594s You are welcome to redistribute it under certain conditions. 594s Type 'license()' or 'licence()' for distribution details. 594s 594s R is a collaborative project with many contributors. 594s Type 'contributors()' for more information and 594s 'citation()' on how to cite R or R packages in publications. 594s 594s Type 'demo()' for some demos, 'help()' for on-line help, or 594s 'help.start()' for an HTML browser interface to help. 594s Type 'q()' to quit R. 594s 594s > options(digits=6) 594s > library(sp) 595s > data(meuse) 595s > set.seed(158229572) 595s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 595s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 595s > library(gstat) 595s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 595s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 595s + block = c(40,40), nmax = 40, nsim = 10) 595s drawing 10 GLS realisations of beta... 595s [using conditional Gaussian simulation] 595s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 595s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 595s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 595s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 595s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 595s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 595s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 595s sim8 sim9 sim10 595s 1 294.107 113.347 279.991 595s 2 776.498 724.160 901.692 595s 3 338.021 630.244 140.272 595s 4 127.301 957.242 444.007 595s 5 533.773 748.144 623.960 595s 6 1084.170 537.604 -214.972 595s > 595s BEGIN TEST stars.R 595s 595s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 595s Copyright (C) 2025 The R Foundation for Statistical Computing 595s Platform: aarch64-unknown-linux-gnu 595s 595s R is free software and comes with ABSOLUTELY NO WARRANTY. 595s You are welcome to redistribute it under certain conditions. 595s Type 'license()' or 'licence()' for distribution details. 595s 595s R is a collaborative project with many contributors. 595s Type 'contributors()' for more information and 595s 'citation()' on how to cite R or R packages in publications. 595s 595s Type 'demo()' for some demos, 'help()' for on-line help, or 595s 'help.start()' for an HTML browser interface to help. 595s Type 'q()' to quit R. 595s 595s > Sys.setenv(TZ = "UTC") 595s > 595s > # 0. using sp: 595s > 595s > suppressPackageStartupMessages(library(sp)) 595s > demo(meuse, ask = FALSE) 595s 595s 595s demo(meuse) 595s ---- ~~~~~ 595s 595s > require(sp) 595s 595s > crs = CRS("EPSG:28992") 596s 596s > data("meuse") 596s 596s > coordinates(meuse) <- ~x+y 596s 596s > proj4string(meuse) <- crs 596s 596s > data("meuse.grid") 596s 596s > coordinates(meuse.grid) <- ~x+y 596s 596s > gridded(meuse.grid) <- TRUE 596s 596s > proj4string(meuse.grid) <- crs 596s 596s > data("meuse.riv") 596s 596s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 596s 596s > proj4string(meuse.riv) <- crs 596s 596s > data("meuse.area") 596s 596s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 596s 596s > proj4string(meuse.area) <- crs 596s > suppressPackageStartupMessages(library(gstat)) 596s > v = variogram(log(zinc)~1, meuse) 596s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 596s model psill range 596s 1 Nug 0.05066243 0.0000 596s 2 Sph 0.59060780 897.0209 596s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 596s [using ordinary kriging] 596s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 597s [using ordinary kriging] 597s > 597s > # 1. using sf: 597s > suppressPackageStartupMessages(library(sf)) 597s > demo(meuse_sf, ask = FALSE, echo = FALSE) 597s > # reloads meuse as data.frame, so 597s > demo(meuse, ask = FALSE) 597s 597s 597s demo(meuse) 597s ---- ~~~~~ 597s 597s > require(sp) 597s 597s > crs = CRS("EPSG:28992") 597s 597s > data("meuse") 597s 597s > coordinates(meuse) <- ~x+y 597s 597s > proj4string(meuse) <- crs 597s 597s > data("meuse.grid") 597s 597s > coordinates(meuse.grid) <- ~x+y 597s 597s > gridded(meuse.grid) <- TRUE 597s 597s > proj4string(meuse.grid) <- crs 597s 597s > data("meuse.riv") 597s 597s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 597s 597s > proj4string(meuse.riv) <- crs 597s 597s > data("meuse.area") 597s 597s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 597s 597s > proj4string(meuse.area) <- crs 597s > 597s > v = variogram(log(zinc)~1, meuse_sf) 597s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 597s model psill range 597s 1 Nug 0.05066243 0.0000 597s 2 Sph 0.59060780 897.0209 597s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 597s [using ordinary kriging] 597s > 597s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 597s [1] TRUE 597s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 597s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 597s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 597s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 597s > 597s > # 2. using stars for grid: 597s > 597s > suppressPackageStartupMessages(library(stars)) 597s > st = st_as_stars(meuse.grid) 597s > st_crs(st) 597s Coordinate Reference System: 597s User input: Amersfoort / RD New 597s wkt: 597s PROJCRS["Amersfoort / RD New", 597s BASEGEOGCRS["Amersfoort", 597s DATUM["Amersfoort", 597s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 597s LENGTHUNIT["metre",1]]], 597s PRIMEM["Greenwich",0, 597s ANGLEUNIT["degree",0.0174532925199433]], 597s ID["EPSG",4289]], 597s CONVERSION["RD New", 597s METHOD["Oblique Stereographic", 597s ID["EPSG",9809]], 597s PARAMETER["Latitude of natural origin",52.1561605555556, 597s ANGLEUNIT["degree",0.0174532925199433], 597s ID["EPSG",8801]], 597s PARAMETER["Longitude of natural origin",5.38763888888889, 597s ANGLEUNIT["degree",0.0174532925199433], 597s ID["EPSG",8802]], 597s PARAMETER["Scale factor at natural origin",0.9999079, 597s SCALEUNIT["unity",1], 597s ID["EPSG",8805]], 597s PARAMETER["False easting",155000, 597s LENGTHUNIT["metre",1], 597s ID["EPSG",8806]], 597s PARAMETER["False northing",463000, 597s LENGTHUNIT["metre",1], 597s ID["EPSG",8807]]], 597s CS[Cartesian,2], 597s AXIS["easting (X)",east, 597s ORDER[1], 597s LENGTHUNIT["metre",1]], 597s AXIS["northing (Y)",north, 597s ORDER[2], 597s LENGTHUNIT["metre",1]], 597s USAGE[ 597s SCOPE["Engineering survey, topographic mapping."], 597s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 597s BBOX[50.75,3.2,53.7,7.22]], 597s ID["EPSG",28992]] 597s > 597s > # compare inputs: 597s > sp = as(st, "Spatial") 597s > fullgrid(meuse.grid) = TRUE 597s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 597s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 597s [2] "Names: 1 string mismatch" 597s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 597s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 597s [2] "Names: 1 string mismatch" 597s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 597s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 597s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 597s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 597s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 597s > 597s > # kriging: 597s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 597s > k_st = if (Sys.getenv("USER") == "travis") { 597s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 597s + } else { 597s + krige(log(zinc)~1, meuse_sf, st, v.fit) 597s + } 597s [using ordinary kriging] 597s > k_st 597s stars object with 2 dimensions and 2 attributes 597s attribute(s): 597s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 597s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 597s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 597s dimension(s): 597s from to offset delta x/y 597s x 1 78 178440 40 [x] 597s y 1 104 333760 -40 [y] 597s > 597s > # handle factors, when going to stars? 597s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 597s > st_as_stars(k_sp_grd) 597s stars object with 2 dimensions and 3 attributes 597s attribute(s): 597s var1.pred var1.var cls 597s Min. :4.777 Min. :0.0855 (0,5]: 316 597s 1st Qu.:5.238 1st Qu.:0.1373 (5,6]:1778 597s Median :5.573 Median :0.1622 (6,7]: 962 597s Mean :5.707 Mean :0.1853 (7,8]: 47 597s 3rd Qu.:6.172 3rd Qu.:0.2116 (8,9]: 0 597s Max. :7.440 Max. :0.5003 NA's :5009 597s NA's :5009 NA's :5009 597s dimension(s): 597s from to offset delta refsys x/y 597s x 1 78 178440 40 Amersfoort / RD New [x] 597s y 1 104 333760 -40 Amersfoort / RD New [y] 597s > if (require(raster, quietly = TRUE)) { 597s + print(st_as_stars(raster::stack(k_sp_grd))) # check 597s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 597s + } 602s stars object with 3 dimensions and 1 attribute 602s attribute(s): 602s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 602s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 602s dimension(s): 602s from to offset delta refsys values 602s x 1 78 178440 40 Amersfoort / RD New NULL 602s y 1 104 333760 -40 Amersfoort / RD New NULL 602s band 1 3 NA NA NA var1.pred, var1.var , cls 602s x/y 602s x [x] 602s y [y] 602s band 603s [1] TRUE 603s > 603s > suppressPackageStartupMessages(library(spacetime)) 603s > 603s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 603s > n = 4 603s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 603s + stars:::create_dimensions(list( 603s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 603s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 603s + time = stars:::create_dimension(values = tm + 1:n)), 603s + raster = stars:::get_raster(dimensions = c("x", "y"))) 603s + ) 603s > s 603s stars object with 3 dimensions and 1 attribute 603s attribute(s): 603s Min. 1st Qu. Median Mean 3rd Qu. Max. 603s foo 1 16.75 32.5 32.5 48.25 64 603s dimension(s): 603s from to offset delta refsys x/y 603s x 1 4 10 0.5 NA [x] 603s y 1 4 0 -0.7 NA [y] 603s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 603s > 603s > as.data.frame(s) 603s x y time foo 603s 1 10.25 -0.35 2019-02-25 15:37:25 1 603s 2 10.75 -0.35 2019-02-25 15:37:25 2 603s 3 11.25 -0.35 2019-02-25 15:37:25 3 603s 4 11.75 -0.35 2019-02-25 15:37:25 4 603s 5 10.25 -1.05 2019-02-25 15:37:25 5 603s 6 10.75 -1.05 2019-02-25 15:37:25 6 603s 7 11.25 -1.05 2019-02-25 15:37:25 7 603s 8 11.75 -1.05 2019-02-25 15:37:25 8 603s 9 10.25 -1.75 2019-02-25 15:37:25 9 603s 10 10.75 -1.75 2019-02-25 15:37:25 10 603s 11 11.25 -1.75 2019-02-25 15:37:25 11 603s 12 11.75 -1.75 2019-02-25 15:37:25 12 603s 13 10.25 -2.45 2019-02-25 15:37:25 13 603s 14 10.75 -2.45 2019-02-25 15:37:25 14 603s 15 11.25 -2.45 2019-02-25 15:37:25 15 603s 16 11.75 -2.45 2019-02-25 15:37:25 16 603s 17 10.25 -0.35 2019-02-25 15:37:26 17 603s 18 10.75 -0.35 2019-02-25 15:37:26 18 603s 19 11.25 -0.35 2019-02-25 15:37:26 19 603s 20 11.75 -0.35 2019-02-25 15:37:26 20 603s 21 10.25 -1.05 2019-02-25 15:37:26 21 603s 22 10.75 -1.05 2019-02-25 15:37:26 22 603s 23 11.25 -1.05 2019-02-25 15:37:26 23 603s 24 11.75 -1.05 2019-02-25 15:37:26 24 603s 25 10.25 -1.75 2019-02-25 15:37:26 25 603s 26 10.75 -1.75 2019-02-25 15:37:26 26 603s 27 11.25 -1.75 2019-02-25 15:37:26 27 603s 28 11.75 -1.75 2019-02-25 15:37:26 28 603s 29 10.25 -2.45 2019-02-25 15:37:26 29 603s 30 10.75 -2.45 2019-02-25 15:37:26 30 603s 31 11.25 -2.45 2019-02-25 15:37:26 31 603s 32 11.75 -2.45 2019-02-25 15:37:26 32 603s 33 10.25 -0.35 2019-02-25 15:37:27 33 603s 34 10.75 -0.35 2019-02-25 15:37:27 34 603s 35 11.25 -0.35 2019-02-25 15:37:27 35 603s 36 11.75 -0.35 2019-02-25 15:37:27 36 603s 37 10.25 -1.05 2019-02-25 15:37:27 37 603s 38 10.75 -1.05 2019-02-25 15:37:27 38 603s 39 11.25 -1.05 2019-02-25 15:37:27 39 603s 40 11.75 -1.05 2019-02-25 15:37:27 40 603s 41 10.25 -1.75 2019-02-25 15:37:27 41 603s 42 10.75 -1.75 2019-02-25 15:37:27 42 603s 43 11.25 -1.75 2019-02-25 15:37:27 43 603s 44 11.75 -1.75 2019-02-25 15:37:27 44 603s 45 10.25 -2.45 2019-02-25 15:37:27 45 603s 46 10.75 -2.45 2019-02-25 15:37:27 46 603s 47 11.25 -2.45 2019-02-25 15:37:27 47 603s 48 11.75 -2.45 2019-02-25 15:37:27 48 603s 49 10.25 -0.35 2019-02-25 15:37:28 49 603s 50 10.75 -0.35 2019-02-25 15:37:28 50 603s 51 11.25 -0.35 2019-02-25 15:37:28 51 603s 52 11.75 -0.35 2019-02-25 15:37:28 52 603s 53 10.25 -1.05 2019-02-25 15:37:28 53 603s 54 10.75 -1.05 2019-02-25 15:37:28 54 603s 55 11.25 -1.05 2019-02-25 15:37:28 55 603s 56 11.75 -1.05 2019-02-25 15:37:28 56 603s 57 10.25 -1.75 2019-02-25 15:37:28 57 603s 58 10.75 -1.75 2019-02-25 15:37:28 58 603s 59 11.25 -1.75 2019-02-25 15:37:28 59 603s 60 11.75 -1.75 2019-02-25 15:37:28 60 603s 61 10.25 -2.45 2019-02-25 15:37:28 61 603s 62 10.75 -2.45 2019-02-25 15:37:28 62 603s 63 11.25 -2.45 2019-02-25 15:37:28 63 603s 64 11.75 -2.45 2019-02-25 15:37:28 64 603s > plot(s, col = sf.colors(), axes = TRUE) 603s > (s.stfdf = as(s, "STFDF")) 603s An object of class "STFDF" 603s Slot "data": 603s foo 603s 1 1 603s 2 2 603s 3 3 603s 4 4 603s 5 5 603s 6 6 603s 7 7 603s 8 8 603s 9 9 603s 10 10 603s 11 11 603s 12 12 603s 13 13 603s 14 14 603s 15 15 603s 16 16 603s 17 17 603s 18 18 603s 19 19 603s 20 20 603s 21 21 603s 22 22 603s 23 23 603s 24 24 603s 25 25 603s 26 26 603s 27 27 603s 28 28 603s 29 29 603s 30 30 603s 31 31 603s 32 32 603s 33 33 603s 34 34 603s 35 35 603s 36 36 603s 37 37 603s 38 38 603s 39 39 603s 40 40 603s 41 41 603s 42 42 603s 43 43 603s 44 44 603s 45 45 603s 46 46 603s 47 47 603s 48 48 603s 49 49 603s 50 50 603s 51 51 603s 52 52 603s 53 53 603s 54 54 603s 55 55 603s 56 56 603s 57 57 603s 58 58 603s 59 59 603s 60 60 603s 61 61 603s 62 62 603s 63 63 603s 64 64 603s 603s Slot "sp": 603s Object of class SpatialPixels 603s Grid topology: 603s cellcentre.offset cellsize cells.dim 603s x 10.25 0.5 4 603s y -2.45 0.7 4 603s SpatialPoints: 603s x y 603s [1,] 10.25 -0.35 603s [2,] 10.75 -0.35 603s [3,] 11.25 -0.35 603s [4,] 11.75 -0.35 603s [5,] 10.25 -1.05 603s [6,] 10.75 -1.05 603s [7,] 11.25 -1.05 603s [8,] 11.75 -1.05 603s [9,] 10.25 -1.75 603s [10,] 10.75 -1.75 603s [11,] 11.25 -1.75 603s [12,] 11.75 -1.75 603s [13,] 10.25 -2.45 603s [14,] 10.75 -2.45 603s [15,] 11.25 -2.45 603s [16,] 11.75 -2.45 603s Coordinate Reference System (CRS) arguments: NA 603s 603s Slot "time": 603s timeIndex 603s 2019-02-25 15:37:25 1 603s 2019-02-25 15:37:26 2 603s 2019-02-25 15:37:27 3 603s 2019-02-25 15:37:28 4 603s 603s Slot "endTime": 603s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 603s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 603s 603s > stplot(s.stfdf, scales = list(draw = TRUE)) 603s > 603s > (s2 = st_as_stars(s.stfdf)) 603s stars object with 3 dimensions and 1 attribute 603s attribute(s): 603s Min. 1st Qu. Median Mean 3rd Qu. Max. 603s foo 1 16.75 32.5 32.5 48.25 64 603s dimension(s): 603s from to offset delta refsys x/y 603s x 1 4 10 0.5 NA [x] 603s y 1 4 -1.11e-16 -0.7 NA [y] 603s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 603s > plot(s2, col = sf.colors(), axes = TRUE) 603s > all.equal(s, s2, check.attributes = FALSE) 603s [1] TRUE 603s > 603s > # multiple simulations: 603s > data(meuse, package = "sp") 603s > data(meuse.grid, package = "sp") 603s > coordinates(meuse.grid) <- ~x+y 603s > gridded(meuse.grid) <- TRUE 603s > meuse.grid = st_as_stars(meuse.grid) 603s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 603s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 603s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 603s > set.seed(123) 603s > ## IGNORE_RDIFF_BEGIN 603s > (p = predict(g, meuse.grid, nsim = 5)) 603s drawing 5 multivariate GLS realisations of beta... 603s [using conditional Gaussian simulation] 603s stars object with 3 dimensions and 2 attributes 603s attribute(s): 603s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 603s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 603s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 603s dimension(s): 603s from to offset delta values x/y 603s x 1 78 178440 40 NULL [x] 603s y 1 104 333760 -40 NULL [y] 603s sample 1 5 NA NA sim1,...,sim5 603s > ## IGNORE_RDIFF_END 603s > 603s BEGIN TEST unproj.R 603s 603s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 603s Copyright (C) 2025 The R Foundation for Statistical Computing 603s Platform: aarch64-unknown-linux-gnu 603s 603s R is free software and comes with ABSOLUTELY NO WARRANTY. 603s You are welcome to redistribute it under certain conditions. 603s Type 'license()' or 'licence()' for distribution details. 603s 603s R is a collaborative project with many contributors. 603s Type 'contributors()' for more information and 603s 'citation()' on how to cite R or R packages in publications. 603s 603s Type 'demo()' for some demos, 'help()' for on-line help, or 603s 'help.start()' for an HTML browser interface to help. 603s Type 'q()' to quit R. 603s 603s > # DOI 10.1007/s11004-011-9344-7 603s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 603s > 603s > suppressPackageStartupMessages(library(sp)) 603s > library(gstat) 604s > 604s > if (require(sp, quietly = TRUE) && 604s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 604s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 604s + data(meuse) 604s + coordinates(meuse) = ~x+y 604s + proj4string(meuse) = CRS("+init=epsg:28992") 604s + ll = "+proj=longlat +ellps=WGS84" 604s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 604s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 604s + meuse.ll[1:10,] 604s + variogram(log(zinc)~1, meuse.ll) 604s + 604s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 604s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 604s + 604s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 604s + abline(0,1) 604s + 604s + data(ozone2) 604s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 604s + data.frame(t(ozone2$y)), 604s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 604s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 604s + utm16 = "+proj=utm +zone=16" 604s + # oz.utm = spTransform(oz, utm16) 604s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 604s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 604s + 604s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 604s + 604s + foo <- 604s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 604s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 604s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 604s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 604s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 604s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 604s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 604s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 604s + -11L), class = "data.frame") 604s + 604s + coordinates(foo) <- ~lon+lat 604s + 604s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 604s + 604s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 604s + 604s + cat('==========\nvariogram:\n') 604s + print(head(vg.foo)) 604s + 604s + cat('==========\nspDistsN1 Distances:\n') 604s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 604s + } 605s ========== 605s variogram: 605s dist gamma dir.hor dir.ver id left right 605s 1 3115.1190 8.971063e-04 0 0 var1 2 1 605s 2 1908.0468 1.909846e+01 0 0 var1 3 1 605s 3 1405.6211 1.883757e+01 0 0 var1 3 2 605s 4 1837.5667 1.347749e+01 0 0 var1 4 1 605s 5 1522.8765 1.325847e+01 0 0 var1 4 2 605s 6 119.9386 4.886139e-01 0 0 var1 4 3 605s ========== 605s spDistsN1 Distances: 605s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 605s [8] 3081.7541 4090.4022 665.9348 2683.1516 605s > 605s Warning message: 605s In CPL_crs_from_input(x) : 605s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Further messages of this type will be suppressed. 605s BEGIN TEST variogram.R 605s 605s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 605s Copyright (C) 2025 The R Foundation for Statistical Computing 605s Platform: aarch64-unknown-linux-gnu 605s 605s R is free software and comes with ABSOLUTELY NO WARRANTY. 605s You are welcome to redistribute it under certain conditions. 605s Type 'license()' or 'licence()' for distribution details. 605s 605s R is a collaborative project with many contributors. 605s Type 'contributors()' for more information and 605s 'citation()' on how to cite R or R packages in publications. 605s 605s Type 'demo()' for some demos, 'help()' for on-line help, or 605s 'help.start()' for an HTML browser interface to help. 605s Type 'q()' to quit R. 605s 605s > library(sp) 606s > library(gstat) 606s > data(meuse) 606s > variogram(log(zinc)~1, ~x+y, meuse) 606s np dist gamma dir.hor dir.ver id 606s 1 57 79.29244 0.1234479 0 0 var1 606s 2 299 163.97367 0.2162185 0 0 var1 606s 3 419 267.36483 0.3027859 0 0 var1 606s 4 457 372.73542 0.4121448 0 0 var1 606s 5 547 478.47670 0.4634128 0 0 var1 606s 6 533 585.34058 0.5646933 0 0 var1 606s 7 574 693.14526 0.5689683 0 0 var1 606s 8 564 796.18365 0.6186769 0 0 var1 606s 9 589 903.14650 0.6471479 0 0 var1 606s 10 543 1011.29177 0.6915705 0 0 var1 606s 11 500 1117.86235 0.7033984 0 0 var1 606s 12 477 1221.32810 0.6038770 0 0 var1 606s 13 452 1329.16407 0.6517158 0 0 var1 606s 14 457 1437.25620 0.5665318 0 0 var1 606s 15 415 1543.20248 0.5748227 0 0 var1 606s > 606s > coordinates(meuse) <- ~ x + y 606s > variogram(log(zinc)~1, meuse) 606s np dist gamma dir.hor dir.ver id 606s 1 57 79.29244 0.1234479 0 0 var1 606s 2 299 163.97367 0.2162185 0 0 var1 606s 3 419 267.36483 0.3027859 0 0 var1 606s 4 457 372.73542 0.4121448 0 0 var1 606s 5 547 478.47670 0.4634128 0 0 var1 606s 6 533 585.34058 0.5646933 0 0 var1 606s 7 574 693.14526 0.5689683 0 0 var1 606s 8 564 796.18365 0.6186769 0 0 var1 606s 9 589 903.14650 0.6471479 0 0 var1 606s 10 543 1011.29177 0.6915705 0 0 var1 606s 11 500 1117.86235 0.7033984 0 0 var1 606s 12 477 1221.32810 0.6038770 0 0 var1 606s 13 452 1329.16407 0.6517158 0 0 var1 606s 14 457 1437.25620 0.5665318 0 0 var1 606s 15 415 1543.20248 0.5748227 0 0 var1 606s > 606s > ind=seq(1,155,2) 606s > var1= meuse[ind,] 606s > var2= meuse[-ind,] 606s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 606s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 606s > v.cross <- variogram(g) 606s > plot(v.cross) 606s > 606s > 606s BEGIN TEST vdist.R 606s 606s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 606s Copyright (C) 2025 The R Foundation for Statistical Computing 606s Platform: aarch64-unknown-linux-gnu 606s 606s R is free software and comes with ABSOLUTELY NO WARRANTY. 606s You are welcome to redistribute it under certain conditions. 606s Type 'license()' or 'licence()' for distribution details. 606s 606s R is a collaborative project with many contributors. 606s Type 'contributors()' for more information and 606s 'citation()' on how to cite R or R packages in publications. 606s 606s Type 'demo()' for some demos, 'help()' for on-line help, or 606s 'help.start()' for an HTML browser interface to help. 606s Type 'q()' to quit R. 606s 606s > library(sp) 606s > library(gstat) 607s > 607s > data(meuse) 607s > coordinates(meuse) = ~x+y 607s > data(meuse.grid) 607s > gridded(meuse.grid) = ~x+y 607s > 607s > mg = meuse.grid 607s > gridded(mg) = FALSE 607s > mg= mg[1500,] 607s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 607s + vdist=FALSE, maxdist=1000, nmax = 9) 607s [using ordinary kriging] 607s coordinates var1.pred var1.var 607s 1500 (180260, 331300) 5.024413 1.114475 607s > 607s > ## IGNORE_RDIFF_BEGIN 607s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 607s + vdist=TRUE, maxdist=1000, nmax = 9) 607s [using ordinary kriging] 607s coordinates var1.pred var1.var 607s 1500 (180260, 331300) 5.568531 1.112945 607s > ## IGNORE_RDIFF_END 607s > 607s autopkgtest [23:49:20]: test run-unit-test: -----------------------] 608s autopkgtest [23:49:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 608s run-unit-test PASS 608s autopkgtest [23:49:21]: test pkg-r-autopkgtest: preparing testbed 608s Reading package lists... 609s Building dependency tree... 609s Reading state information... 609s Solving dependencies... 609s The following NEW packages will be installed: 609s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 609s dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 609s gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 609s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 609s libasan8 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 609s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 609s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 609s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 609s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 609s libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev linux-libc-dev 609s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 609s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 609s Need to get 103 MB of archives. 609s After this operation, 377 MB of additional disk space will be used. 609s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 609s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 613s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 613s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 613s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 617s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 618s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 618s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 642s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 642s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 642s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 642s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 642s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 642s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 654s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 660s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 666s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 670s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 675s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 682s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 735s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 735s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 735s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 735s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 743s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 808s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 808s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 808s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 808s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 808s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 808s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 808s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 831s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 831s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 831s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 831s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 831s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 831s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 831s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 831s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 857s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 857s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 857s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 857s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 864s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 864s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 864s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 864s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 865s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 866s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 866s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 868s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 868s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 868s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 868s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 868s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 868s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 868s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 868s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 868s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 868s Fetched 103 MB in 4min 19s (397 kB/s) 868s Selecting previously unselected package libc-dev-bin. 868s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 145862 files and directories currently installed.) 868s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 868s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 869s Selecting previously unselected package linux-libc-dev:arm64. 869s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_arm64.deb ... 869s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 869s Selecting previously unselected package libcrypt-dev:arm64. 869s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 869s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 869s Selecting previously unselected package rpcsvc-proto. 869s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 869s Unpacking rpcsvc-proto (1.4.3-1build1) ... 869s Selecting previously unselected package libc6-dev:arm64. 869s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_arm64.deb ... 869s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 869s Selecting previously unselected package libisl23:arm64. 869s Preparing to unpack .../05-libisl23_0.27-1build1_arm64.deb ... 869s Unpacking libisl23:arm64 (0.27-1build1) ... 869s Selecting previously unselected package libmpc3:arm64. 869s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ... 869s Unpacking libmpc3:arm64 (1.3.1-2) ... 869s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 869s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 869s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package cpp-15. 870s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package cpp-aarch64-linux-gnu. 870s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 870s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 870s Selecting previously unselected package cpp. 870s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 870s Unpacking cpp (4:15.2.0-4ubuntu1) ... 870s Selecting previously unselected package libcc1-0:arm64. 870s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package libitm1:arm64. 870s Preparing to unpack .../12-libitm1_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package libasan8:arm64. 870s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package liblsan0:arm64. 871s Preparing to unpack .../14-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package libtsan2:arm64. 871s Preparing to unpack .../15-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package libubsan1:arm64. 871s Preparing to unpack .../16-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package libhwasan0:arm64. 871s Preparing to unpack .../17-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package libgcc-15-dev:arm64. 871s Preparing to unpack .../18-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 871s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 871s Preparing to unpack .../19-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 871s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 872s Selecting previously unselected package gcc-15. 872s Preparing to unpack .../20-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 872s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 872s Selecting previously unselected package gcc-aarch64-linux-gnu. 872s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 872s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 872s Selecting previously unselected package gcc. 872s Preparing to unpack .../22-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 872s Unpacking gcc (4:15.2.0-4ubuntu1) ... 872s Selecting previously unselected package libstdc++-15-dev:arm64. 872s Preparing to unpack .../23-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 872s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 872s Selecting previously unselected package g++-15-aarch64-linux-gnu. 872s Preparing to unpack .../24-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 872s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 873s Selecting previously unselected package g++-15. 873s Preparing to unpack .../25-g++-15_15.2.0-12ubuntu1_arm64.deb ... 873s Unpacking g++-15 (15.2.0-12ubuntu1) ... 873s Selecting previously unselected package g++-aarch64-linux-gnu. 873s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 873s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 873s Selecting previously unselected package g++. 873s Preparing to unpack .../27-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 873s Unpacking g++ (4:15.2.0-4ubuntu1) ... 873s Selecting previously unselected package build-essential. 873s Preparing to unpack .../28-build-essential_12.12ubuntu2_arm64.deb ... 873s Unpacking build-essential (12.12ubuntu2) ... 873s Selecting previously unselected package dctrl-tools. 873s Preparing to unpack .../29-dctrl-tools_2.24-3build4_arm64.deb ... 873s Unpacking dctrl-tools (2.24-3build4) ... 873s Selecting previously unselected package libgfortran-15-dev:arm64. 873s Preparing to unpack .../30-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 873s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 873s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 873s Preparing to unpack .../31-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 873s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 874s Selecting previously unselected package gfortran-15. 874s Preparing to unpack .../32-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 874s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 874s Selecting previously unselected package gfortran-aarch64-linux-gnu. 874s Preparing to unpack .../33-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 874s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 874s Selecting previously unselected package gfortran. 874s Preparing to unpack .../34-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 874s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 874s Selecting previously unselected package icu-devtools. 874s Preparing to unpack .../35-icu-devtools_78.2-1ubuntu1_arm64.deb ... 874s Unpacking icu-devtools (78.2-1ubuntu1) ... 874s Selecting previously unselected package libblas-dev:arm64. 874s Preparing to unpack .../36-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 874s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 874s Selecting previously unselected package libbz2-dev:arm64. 874s Preparing to unpack .../37-libbz2-dev_1.0.8-6build2_arm64.deb ... 874s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 874s Selecting previously unselected package libdeflate-dev:arm64. 874s Preparing to unpack .../38-libdeflate-dev_1.23-2build1_arm64.deb ... 874s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 874s Selecting previously unselected package libicu-dev:arm64. 874s Preparing to unpack .../39-libicu-dev_78.2-1ubuntu1_arm64.deb ... 874s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 875s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 875s Preparing to unpack .../40-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 875s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 875s Selecting previously unselected package libjpeg8-dev:arm64. 875s Preparing to unpack .../41-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 875s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 875s Selecting previously unselected package libjpeg-dev:arm64. 875s Preparing to unpack .../42-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 875s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 875s Selecting previously unselected package liblapack-dev:arm64. 875s Preparing to unpack .../43-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 875s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 875s Selecting previously unselected package libncurses-dev:arm64. 875s Preparing to unpack .../44-libncurses-dev_6.6+20251231-1_arm64.deb ... 875s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 875s Selecting previously unselected package libpcre2-16-0:arm64. 875s Preparing to unpack .../45-libpcre2-16-0_10.46-1_arm64.deb ... 875s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 875s Selecting previously unselected package libpcre2-32-0:arm64. 875s Preparing to unpack .../46-libpcre2-32-0_10.46-1_arm64.deb ... 875s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 875s Selecting previously unselected package libpcre2-posix3:arm64. 875s Preparing to unpack .../47-libpcre2-posix3_10.46-1_arm64.deb ... 875s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 875s Selecting previously unselected package libpcre2-dev:arm64. 875s Preparing to unpack .../48-libpcre2-dev_10.46-1_arm64.deb ... 875s Unpacking libpcre2-dev:arm64 (10.46-1) ... 876s Selecting previously unselected package libpkgconf3:arm64. 876s Preparing to unpack .../49-libpkgconf3_1.8.1-4build1_arm64.deb ... 876s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 876s Selecting previously unselected package zlib1g-dev:arm64. 876s Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 876s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 876s Selecting previously unselected package libpng-dev:arm64. 876s Preparing to unpack .../51-libpng-dev_1.6.54-1_arm64.deb ... 876s Unpacking libpng-dev:arm64 (1.6.54-1) ... 876s Selecting previously unselected package libreadline-dev:arm64. 876s Preparing to unpack .../52-libreadline-dev_8.3-3_arm64.deb ... 876s Unpacking libreadline-dev:arm64 (8.3-3) ... 876s Selecting previously unselected package libzstd-dev:arm64. 876s Preparing to unpack .../53-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 876s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 876s Selecting previously unselected package liblzma-dev:arm64. 876s Preparing to unpack .../54-liblzma-dev_5.8.2-2_arm64.deb ... 876s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 876s Selecting previously unselected package pkgconf-bin. 876s Preparing to unpack .../55-pkgconf-bin_1.8.1-4build1_arm64.deb ... 876s Unpacking pkgconf-bin (1.8.1-4build1) ... 876s Selecting previously unselected package pkgconf:arm64. 876s Preparing to unpack .../56-pkgconf_1.8.1-4build1_arm64.deb ... 876s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 876s Selecting previously unselected package libtirpc-dev:arm64. 876s Preparing to unpack .../57-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 876s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 876s Selecting previously unselected package r-base-dev. 876s Preparing to unpack .../58-r-base-dev_4.5.2-1ubuntu2_all.deb ... 876s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 876s Selecting previously unselected package pkg-r-autopkgtest. 876s Preparing to unpack .../59-pkg-r-autopkgtest_20250812_all.deb ... 876s Unpacking pkg-r-autopkgtest (20250812) ... 877s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 877s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 877s Setting up libpcre2-16-0:arm64 (10.46-1) ... 877s Setting up libpcre2-32-0:arm64 (10.46-1) ... 877s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 877s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 877s Setting up rpcsvc-proto (1.4.3-1build1) ... 877s Setting up libmpc3:arm64 (1.3.1-2) ... 877s Setting up icu-devtools (78.2-1ubuntu1) ... 877s Setting up pkgconf-bin (1.8.1-4build1) ... 877s Setting up liblzma-dev:arm64 (5.8.2-2) ... 877s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libpcre2-posix3:arm64 (10.46-1) ... 877s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 877s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libisl23:arm64 (0.27-1build1) ... 877s Setting up libc-dev-bin (2.42-2ubuntu4) ... 877s Setting up libdeflate-dev:arm64 (1.23-2build1) ... 877s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 877s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ... 877s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 877s Setting up dctrl-tools (2.24-3build4) ... 877s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 877s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 877s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 877s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 877s Setting up pkgconf:arm64 (1.8.1-4build1) ... 877s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 877s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 877s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 877s Setting up cpp-15 (15.2.0-12ubuntu1) ... 877s Setting up cpp (4:15.2.0-4ubuntu1) ... 877s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ... 877s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ... 877s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 877s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 877s Setting up libncurses-dev:arm64 (6.6+20251231-1) ... 877s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 877s Setting up libpcre2-dev:arm64 (10.46-1) ... 877s Setting up libreadline-dev:arm64 (8.3-3) ... 877s Setting up gcc-15 (15.2.0-12ubuntu1) ... 877s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 877s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 877s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 877s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 877s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 877s Setting up g++-15 (15.2.0-12ubuntu1) ... 877s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 877s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 877s Setting up libpng-dev:arm64 (1.6.54-1) ... 877s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 877s Setting up gcc (4:15.2.0-4ubuntu1) ... 877s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 877s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 877s Setting up gfortran (4:15.2.0-4ubuntu1) ... 877s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 877s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 877s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 877s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 877s Setting up g++ (4:15.2.0-4ubuntu1) ... 877s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 877s Setting up build-essential (12.12ubuntu2) ... 877s Setting up r-base-dev (4.5.2-1ubuntu2) ... 877s Setting up pkg-r-autopkgtest (20250812) ... 877s Processing triggers for libc-bin (2.42-2ubuntu4) ... 877s Processing triggers for man-db (2.13.1-1build1) ... 878s Processing triggers for install-info (7.2-5) ... 879s autopkgtest [23:53:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 879s autopkgtest [23:53:52]: test pkg-r-autopkgtest: [----------------------- 879s Test: Try to load the R library gstat 879s 879s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 879s Copyright (C) 2025 The R Foundation for Statistical Computing 879s Platform: aarch64-unknown-linux-gnu 879s 879s R is free software and comes with ABSOLUTELY NO WARRANTY. 879s You are welcome to redistribute it under certain conditions. 879s Type 'license()' or 'licence()' for distribution details. 879s 879s R is a collaborative project with many contributors. 879s Type 'contributors()' for more information and 879s 'citation()' on how to cite R or R packages in publications. 879s 879s Type 'demo()' for some demos, 'help()' for on-line help, or 879s 'help.start()' for an HTML browser interface to help. 879s Type 'q()' to quit R. 879s 880s > library('gstat') 880s > 881s autopkgtest [23:53:54]: test pkg-r-autopkgtest: -----------------------] 881s pkg-r-autopkgtest PASS 881s autopkgtest [23:53:54]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 882s autopkgtest [23:53:55]: @@@@@@@@@@@@@@@@@@@@ summary 882s run-unit-test PASS 882s pkg-r-autopkgtest PASS